@jbrowse/plugin-data-management 2.0.0 → 2.1.2

package/dist/AddTrackWidget/components/ConfirmTrack.js

@@ -22,38 +22,22 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var configuration_1 = require("@jbrowse/core/configuration");
-var util_1 = require("@jbrowse/core/util");
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
+const react_1 = __importStar(require("react"));
+const configuration_1 = require("@jbrowse/core/configuration");
+const util_1 = require("@jbrowse/core/util");
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
 // icons
-var Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
-var Add_1 = __importDefault(require("@mui/icons-material//Add"));
-var mobx_react_1 = require("mobx-react");
-var mobx_state_tree_1 = require("mobx-state-tree");
-var tracks_1 = require("@jbrowse/core/util/tracks");
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
+const Add_1 = __importDefault(require("@mui/icons-material//Add"));
+const mobx_react_1 = require("mobx-react");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const tracks_1 = require("@jbrowse/core/util/tracks");
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     spacing: {
         marginBottom: theme.spacing(3),
     },
@@ -68,11 +52,10 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     card: {
         marginTop: theme.spacing(1),
     },
-}); });
-function StatusMessage(_a) {
-    var _b;
-    var trackAdapter = _a.trackAdapter, trackType = _a.trackType;
-    var classes = useStyles().classes;
+}));
+function StatusMessage({ trackAdapter, trackType, }) {
+    var _a;
+    const { classes } = useStyles();
     return trackAdapter.type === 'SNPCoverageAdapter' ? (react_1.default.createElement(material_1.Typography, { className: classes.spacing },
         "Selected ",
         react_1.default.createElement("code", null, trackType),
@@ -81,7 +64,7 @@ function StatusMessage(_a) {
         react_1.default.createElement("code", null, trackAdapter.type),
         " with subadapter",
         ' ',
-        react_1.default.createElement("code", null, (_b = trackAdapter.subadapter) === null || _b === void 0 ? void 0 : _b.type),
+        react_1.default.createElement("code", null, (_a = trackAdapter.subadapter) === null || _a === void 0 ? void 0 : _a.type),
         ". Please enter a track name and, if necessary, update the track type.")) : (react_1.default.createElement(material_1.Typography, { className: classes.spacing },
         "Using adapter ",
         react_1.default.createElement("code", null, trackAdapter.type),
@@ -99,10 +82,10 @@ function StatusMessage(_a) {
  *   found under that subheader
  */
 function categorizeAdapters(adaptersList) {
-    var currentCategory = '';
+    let currentCategory = '';
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    var items = [];
-    adaptersList.forEach(function (adapter) {
+    const items = [];
+    adaptersList.forEach(adapter => {
         var _a, _b, _c, _d, _e, _f, _g, _h;
         if ((_a = adapter.adapterMetadata) === null || _a === void 0 ? void 0 : _a.category) {
             if (currentCategory !== ((_b = adapter.adapterMetadata) === null || _b === void 0 ? void 0 : _b.category)) {
@@ -122,14 +105,13 @@ function getAdapterTypes(pluginManager) {
 function getTrackTypes(pluginManager) {
     return pluginManager.getElementTypesInGroup('track');
 }
-var TextIndexingConfig = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
-    var _b = __read((0, react_1.useState)(''), 2), value1 = _b[0], setValue1 = _b[1];
-    var _c = __read((0, react_1.useState)(''), 2), value2 = _c[0], setValue2 = _c[1];
-    var _d = __read((0, react_1.useState)(['Name', 'ID']), 2), attributes = _d[0], setAttributes = _d[1];
-    var _e = __read((0, react_1.useState)(['CDS', 'exon']), 2), exclude = _e[0], setExclude = _e[1];
-    var sections = [
+const TextIndexingConfig = (0, mobx_react_1.observer)(({ model }) => {
+    const { classes } = useStyles();
+    const [value1, setValue1] = (0, react_1.useState)('');
+    const [value2, setValue2] = (0, react_1.useState)('');
+    const [attributes, setAttributes] = (0, react_1.useState)(['Name', 'ID']);
+    const [exclude, setExclude] = (0, react_1.useState)(['CDS', 'exon']);
+    const sections = [
         {
             label: 'Indexing attributes',
             values: attributes,
@@ -139,20 +121,20 @@ var TextIndexingConfig = (0, mobx_react_1.observer)(function (_a) {
             values: exclude,
         },
     ];
-    (0, react_1.useEffect)(function () {
-        model.setTextIndexingConf({ attributes: attributes, exclude: exclude });
+    (0, react_1.useEffect)(() => {
+        model.setTextIndexingConf({ attributes, exclude });
     }, [model, attributes, exclude]);
     return (react_1.default.createElement(material_1.Paper, { className: classes.paper },
         react_1.default.createElement(material_1.InputLabel, null, "Indexing configuration"),
-        sections.map(function (section, index) { return (react_1.default.createElement(material_1.Card, { raised: true, key: section.label, className: classes.card },
+        sections.map((section, index) => (react_1.default.createElement(material_1.Card, { raised: true, key: section.label, className: classes.card },
             react_1.default.createElement(material_1.CardContent, null,
                 react_1.default.createElement(material_1.InputLabel, null, section.label),
                 react_1.default.createElement(material_1.List, { disablePadding: true },
-                    section.values.map(function (val, idx) { return (react_1.default.createElement(material_1.ListItem, { key: idx, disableGutters: true },
+                    section.values.map((val, idx) => (react_1.default.createElement(material_1.ListItem, { key: idx, disableGutters: true },
                         react_1.default.createElement(material_1.TextField, { value: val, InputProps: {
                                 endAdornment: (react_1.default.createElement(material_1.InputAdornment, { position: "end" },
-                                    react_1.default.createElement(material_1.IconButton, { color: "secondary", onClick: function () {
-                                            var newAttr = section.values.filter(function (a, i) {
+                                    react_1.default.createElement(material_1.IconButton, { color: "secondary", onClick: () => {
+                                            const newAttr = section.values.filter((a, i) => {
                                                 return i !== idx;
                                             });
                                             index === 0
@@ -160,62 +142,59 @@ var TextIndexingConfig = (0, mobx_react_1.observer)(function (_a) {
                                                 : setExclude(newAttr);
                                         } },
                                         react_1.default.createElement(Delete_1.default, null)))),
-                            } }))); }),
+                            } })))),
                     react_1.default.createElement(material_1.ListItem, { disableGutters: true },
-                        react_1.default.createElement(material_1.TextField, { value: index === 0 ? value1 : value2, placeholder: "add new", onChange: function (event) {
+                        react_1.default.createElement(material_1.TextField, { value: index === 0 ? value1 : value2, placeholder: "add new", onChange: event => {
                                 index === 0
                                     ? setValue1(event.target.value)
                                     : setValue2(event.target.value);
                             }, InputProps: {
                                 endAdornment: (react_1.default.createElement(material_1.InputAdornment, { position: "end" },
-                                    react_1.default.createElement(material_1.IconButton, { onClick: function () {
+                                    react_1.default.createElement(material_1.IconButton, { onClick: () => {
                                             if (index === 0) {
-                                                var newAttr = attributes;
+                                                const newAttr = attributes;
                                                 newAttr.push(value1);
                                                 setAttributes(newAttr);
                                                 setValue1('');
                                             }
                                             else {
-                                                var newFeat = exclude;
+                                                const newFeat = exclude;
                                                 newFeat.push(value2);
                                                 setExclude(newFeat);
                                                 setValue2('');
                                             }
-                                        }, disabled: index === 0 ? value1 === '' : value2 === '', color: "secondary", "data-testid": "stringArrayAdd-Feat" },
+                                        }, disabled: index === 0 ? value1 === '' : value2 === '', color: "secondary", "data-testid": `stringArrayAdd-Feat` },
                                         react_1.default.createElement(Add_1.default, null)))),
-                            } })))))); })));
+                            } })))))))));
 });
-var TrackAdapterSelector = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
-    var session = (0, util_1.getSession)(model);
-    var trackAdapter = model.trackAdapter;
-    // prettier-ignore
-    var adapters = getAdapterTypes((0, mobx_state_tree_1.getEnv)(session).pluginManager);
-    return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "adapterType", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: function (event) {
-            model.setAdapterHint(event.target.value);
-        }, SelectProps: {
+const TrackAdapterSelector = (0, mobx_react_1.observer)(({ model }) => {
+    const { classes } = useStyles();
+    const { trackAdapter } = model;
+    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
+    const adapters = getAdapterTypes(pluginManager);
+    return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "adapterType", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: event => model.setAdapterHint(event.target.value), SelectProps: {
             // @ts-ignore
             SelectDisplayProps: { 'data-testid': 'adapterTypeSelect' },
         } },
         adapters
             // Excludes any adapter with the 'adapterMetadata.hiddenFromGUI' property, and anything with the 'adapterMetadata.category' property
-            .filter(function (elt) {
+            .filter(elt => {
             var _a, _b;
             return !((_a = elt.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI) &&
                 !((_b = elt.adapterMetadata) === null || _b === void 0 ? void 0 : _b.category);
         })
-            .map(function (elt) {
+            .map(elt => {
             var _a, _b;
             return (react_1.default.createElement(material_1.MenuItem, { key: elt.name, value: elt.name }, ((_a = elt.adapterMetadata) === null || _a === void 0 ? void 0 : _a.displayName)
                 ? (_b = elt.adapterMetadata) === null || _b === void 0 ? void 0 : _b.displayName
                 : elt.name));
         }),
-        categorizeAdapters(adapters.filter(function (elt) { var _a; return !((_a = elt.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI); }))));
+        // adapters with the 'adapterMetadata.category' property are categorized
+        // by the value of the property here
+        categorizeAdapters(adapters.filter(elt => { var _a; return !((_a = elt.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI); }))));
 });
-function UnknownAdapterPrompt(_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
+function UnknownAdapterPrompt({ model }) {
+    const { classes } = useStyles();
     return (react_1.default.createElement(react_1.default.Fragment, null,
         react_1.default.createElement(material_1.Typography, { className: classes.spacing },
             "JBrowse was not able to guess the adapter type for this data, but it may be in the list below. If not, you can",
@@ -229,38 +208,32 @@ function UnknownAdapterPrompt(_a) {
             "and add a feature request for this data type."),
         react_1.default.createElement(TrackAdapterSelector, { model: model })));
 }
-var TrackTypeSelector = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
-    var session = (0, util_1.getSession)(model);
-    var trackType = model.trackType;
-    var trackTypes = getTrackTypes((0, mobx_state_tree_1.getEnv)(session).pluginManager);
-    return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: trackType, label: "trackType", helperText: "Select a track type", select: true, fullWidth: true, onChange: function (event) {
+const TrackTypeSelector = (0, mobx_react_1.observer)(({ model }) => {
+    const { classes } = useStyles();
+    const session = (0, util_1.getSession)(model);
+    const { trackType } = model;
+    const trackTypes = getTrackTypes((0, mobx_state_tree_1.getEnv)(session).pluginManager);
+    return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: trackType, label: "trackType", helperText: "Select a track type", select: true, fullWidth: true, onChange: event => {
             model.setTrackType(event.target.value);
         }, SelectProps: {
             // @ts-ignore
             SelectDisplayProps: { 'data-testid': 'trackTypeSelect' },
-        } }, trackTypes.map(function (_a) {
-        var name = _a.name;
-        return (react_1.default.createElement(material_1.MenuItem, { key: name, value: name }, name));
-    })));
+        } }, trackTypes.map(({ name }) => (react_1.default.createElement(material_1.MenuItem, { key: name, value: name }, name)))));
 });
-var TrackAssemblySelector = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
-    var session = (0, util_1.getSession)(model);
-    var assembly = model.assembly;
-    return (react_1.default.createElement(material_1.TextField, { value: assembly, label: "assemblyName", helperText: "Assembly to which the track will be added", select: true, fullWidth: true, onChange: function (event) { return model.setAssembly(event.target.value); }, SelectProps: {
+const TrackAssemblySelector = (0, mobx_react_1.observer)(({ model }) => {
+    const session = (0, util_1.getSession)(model);
+    const { assembly } = model;
+    return (react_1.default.createElement(material_1.TextField, { value: assembly, label: "assemblyName", helperText: "Assembly to which the track will be added", select: true, fullWidth: true, onChange: event => model.setAssembly(event.target.value), SelectProps: {
             // @ts-ignore
             SelectDisplayProps: { 'data-testid': 'assemblyNameSelect' },
         } }, session.assemblies
-        .map(function (conf) { return (0, configuration_1.readConfObject)(conf, 'name'); })
-        .map(function (name) { return (react_1.default.createElement(material_1.MenuItem, { key: name, value: name }, name)); })));
+        .map(conf => (0, configuration_1.readConfObject)(conf, 'name'))
+        .map(name => (react_1.default.createElement(material_1.MenuItem, { key: name, value: name }, name)))));
 });
-function ConfirmTrack(_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
-    var _b = __read((0, react_1.useState)(true), 2), check = _b[0], setCheck = _b[1];
-    var trackName = model.trackName, trackAdapter = model.trackAdapter, trackType = model.trackType, warningMessage = model.warningMessage, adapterHint = model.adapterHint;
+function ConfirmTrack({ model }) {
+    const { classes } = useStyles();
+    const [check, setCheck] = (0, react_1.useState)(true);
+    const { trackName, trackAdapter, trackType, warningMessage, adapterHint } = model;
     if (model.unsupported) {
         return (react_1.default.createElement(material_1.Typography, { className: classes.spacing },
             "This version of JBrowse cannot display data of this type. It is possible, however, that there is a newer version that can display them. You can",
@@ -282,16 +255,16 @@ function ConfirmTrack(_a) {
     if (!(trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type)) {
         return react_1.default.createElement(material_1.Typography, null, "Could not recognize this data type.");
     }
-    var supportedForIndexing = (0, util_1.supportedIndexingAdapters)(trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type);
+    const supportedForIndexing = (0, util_1.supportedIndexingAdapters)(trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type);
     return (react_1.default.createElement("div", null,
         trackAdapter ? (react_1.default.createElement(StatusMessage, { trackAdapter: trackAdapter, trackType: trackType })) : null,
         warningMessage ? (react_1.default.createElement(material_1.Typography, { style: { color: 'orange' } }, warningMessage)) : null,
-        react_1.default.createElement(material_1.TextField, { className: classes.spacing, label: "trackName", helperText: "A name for this track", fullWidth: true, value: trackName, onChange: function (event) { return model.setTrackName(event.target.value); }, inputProps: { 'data-testid': 'trackNameInput' } }),
+        react_1.default.createElement(material_1.TextField, { className: classes.spacing, label: "trackName", helperText: "A name for this track", fullWidth: true, value: trackName, onChange: event => model.setTrackName(event.target.value), inputProps: { 'data-testid': 'trackNameInput' } }),
         react_1.default.createElement(TrackAdapterSelector, { model: model }),
         react_1.default.createElement(TrackTypeSelector, { model: model }),
         react_1.default.createElement(TrackAssemblySelector, { model: model }),
         util_1.isElectron && supportedForIndexing && (react_1.default.createElement(material_1.FormControl, null,
-            react_1.default.createElement(material_1.FormControlLabel, { label: 'Index track for text searching?', control: react_1.default.createElement(material_1.Checkbox, { checked: check, onChange: function (e) {
+            react_1.default.createElement(material_1.FormControlLabel, { label: 'Index track for text searching?', control: react_1.default.createElement(material_1.Checkbox, { checked: check, onChange: e => {
                         setCheck(e.target.checked);
                         model.setTextIndexTrack(e.target.checked);
                     } }) }))),

package/dist/AddTrackWidget/components/ConfirmTrack.js.map

@@ -1 +1 @@
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package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts

@@ -0,0 +1,7 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare function AddTrackWorkflow({ model }: {
+    model: AddTrackModel;
+}): JSX.Element;
+declare const _default: typeof AddTrackWorkflow;
+export default _default;

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js

@@ -0,0 +1,162 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const util_1 = require("@jbrowse/core/util");
+const configuration_1 = require("@jbrowse/core/configuration");
+const mobx_react_1 = require("mobx-react");
+const mobx_state_tree_1 = require("mobx-state-tree");
+// locals
+const ConfirmTrack_1 = __importDefault(require("./ConfirmTrack"));
+const TrackSourceSelect_1 = __importDefault(require("./TrackSourceSelect"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    root: {
+        marginTop: theme.spacing(1),
+    },
+    stepper: {
+        backgroundColor: theme.palette.background.default,
+    },
+    button: {
+        marginTop: theme.spacing(1),
+        marginRight: theme.spacing(1),
+    },
+    actionsContainer: {
+        marginBottom: theme.spacing(2),
+    },
+    stepContent: {
+        margin: theme.spacing(1),
+    },
+    alertContainer: {
+        padding: `${theme.spacing(2)}px 0px ${theme.spacing(2)}px 0px`,
+    },
+}));
+const steps = ['Enter track data', 'Confirm track type'];
+function AddTrackWorkflow({ model }) {
+    const [activeStep, setActiveStep] = (0, react_1.useState)(0);
+    const { classes } = useStyles();
+    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
+    const { rootModel } = pluginManager;
+    const { jobsManager } = rootModel;
+    const session = (0, util_1.getSession)(model);
+    const { assembly, trackAdapter, trackData, trackName, trackType, textIndexTrack, textIndexingConf, } = model;
+    const [trackErrorMessage, setTrackErrorMessage] = (0, react_1.useState)();
+    function getStepContent(step) {
+        switch (step) {
+            case 0:
+                return react_1.default.createElement(TrackSourceSelect_1.default, { model: model });
+            case 1:
+                return react_1.default.createElement(ConfirmTrack_1.default, { model: model });
+            default:
+                return react_1.default.createElement(material_1.Typography, null, "Unknown step");
+        }
+    }
+    async function handleNext() {
+        if (activeStep !== steps.length - 1) {
+            setActiveStep(activeStep + 1);
+            return;
+        }
+        const trackId = [
+            `${trackName.toLowerCase().replace(/ /g, '_')}-${Date.now()}`,
+            `${session.adminMode ? '' : '-sessionTrack'}`,
+        ].join('');
+        const assemblyInstance = session.assemblyManager.get(assembly);
+        if (trackAdapter && trackAdapter.type !== 'UNKNOWN') {
+            session.addTrackConf({
+                trackId,
+                type: trackType,
+                name: trackName,
+                assemblyNames: [assembly],
+                adapter: {
+                    ...trackAdapter,
+                    sequenceAdapter: (0, configuration_1.getConf)(assemblyInstance, ['sequence', 'adapter']),
+                },
+            });
+            if (model.view) {
+                model.view.showTrack(trackId);
+                if (util_1.isElectron &&
+                    textIndexTrack &&
+                    (0, util_1.supportedIndexingAdapters)(trackAdapter.type)) {
+                    const attr = textIndexingConf || {
+                        attributes: ['Name', 'ID'],
+                        exclude: ['CDS', 'exon'],
+                    };
+                    const indexName = trackName + '-index';
+                    const newEntry = {
+                        indexingParams: {
+                            ...attr,
+                            assemblies: [assembly],
+                            tracks: [trackId],
+                            indexType: 'perTrack',
+                            name: indexName,
+                            timestamp: new Date().toISOString(),
+                        },
+                        name: indexName,
+                        cancelCallback: () => jobsManager.abortJob(),
+                    };
+                    jobsManager.queueJob(newEntry);
+                }
+            }
+            else {
+                session.notify('Open a new view, or use the track selector in an existing view, to view this track', 'info');
+            }
+            model.clearData();
+            session.hideWidget(model);
+        }
+        else {
+            setTrackErrorMessage('Failed to add track.\nThe configuration of this file is not currently supported.');
+        }
+    }
+    function handleBack() {
+        setTrackErrorMessage(undefined);
+        setActiveStep(activeStep - 1);
+    }
+    function isNextDisabled() {
+        switch (activeStep) {
+            case 0:
+                return !trackData;
+            case 1:
+                return !(trackName && trackType && (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) && assembly);
+            default:
+                return true;
+        }
+    }
+    return (react_1.default.createElement("div", { className: classes.root },
+        react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map((label, idx) => (react_1.default.createElement(material_1.Step, { key: label },
+            react_1.default.createElement(material_1.StepLabel, null, label),
+            react_1.default.createElement(material_1.StepContent, null,
+                getStepContent(idx),
+                react_1.default.createElement("div", { className: classes.actionsContainer },
+                    react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
+                    react_1.default.createElement(material_1.Button, { disabled: isNextDisabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addTrackNextButton" }, activeStep === steps.length - 1 ? 'Add' : 'Next')),
+                trackErrorMessage ? (react_1.default.createElement("div", { className: classes.alertContainer },
+                    react_1.default.createElement(material_1.Alert, { severity: "error" }, trackErrorMessage))) : null)))))));
+}
+exports.default = (0, mobx_react_1.observer)(AddTrackWorkflow);
+//# sourceMappingURL=DefaultAddTrackWorkflow.js.map

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map

@@ -0,0 +1 @@
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package/dist/AddTrackWidget/components/TrackSourceSelect.js

@@ -3,13 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var ui_1 = require("@jbrowse/core/ui");
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var mobx_state_tree_1 = require("mobx-state-tree");
-var mobx_react_1 = require("mobx-react");
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const react_1 = __importDefault(require("react"));
+const ui_1 = require("@jbrowse/core/ui");
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const mobx_react_1 = require("mobx-react");
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     paper: {
         display: 'flex',
         flexDirection: 'column',
@@ -18,12 +18,11 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     spacer: {
         height: theme.spacing(8),
     },
-}); });
-function TrackSourceSelect(_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
+}));
+function TrackSourceSelect({ model }) {
+    const { classes } = useStyles();
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    var rootModel = (0, mobx_state_tree_1.getRoot)(model);
+    const rootModel = (0, mobx_state_tree_1.getRoot)(model);
     return (react_1.default.createElement(material_1.Paper, { className: classes.paper },
         react_1.default.createElement(ui_1.FileSelector, { name: "Main file", description: "", location: model.trackData, setLocation: model.setTrackData, setName: model.setTrackName, rootModel: rootModel }),
         react_1.default.createElement("div", { className: classes.spacer }),

package/dist/AddTrackWidget/components/TrackSourceSelect.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TrackSourceSelect.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/TrackSourceSelect.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,yCAA+C;AAC/C,4CAAqC;AACrC,uCAA0C;AAC1C,qDAAyC;AACzC,2CAAqC;AAKrC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,KAAK,EAAE;QACL,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,iBAAiB,CAAC,EAAE,KAAK,EAA4B;IAC5D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,8DAA8D;IAC9D,MAAM,SAAS,GAAG,IAAA,yBAAO,EAAM,KAAK,CAAC,CAAA;IAErC,OAAO,CACL,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,8BAAC,iBAAY,IACX,IAAI,EAAC,WAAW,EAChB,WAAW,EAAC,EAAE,EACd,QAAQ,EAAE,KAAK,CAAC,SAAS,EACzB,WAAW,EAAE,KAAK,CAAC,YAAY,EAC/B,OAAO,EAAE,KAAK,CAAC,YAAY,EAC3B,SAAS,EAAE,SAAS,GACpB;QACF,uCAAK,SAAS,EAAE,OAAO,CAAC,MAAM,GAAI;QAClC,8BAAC,iBAAY,IACX,IAAI,EAAC,YAAY,EACjB,WAAW,EAAC,qHAAqH,EACjI,QAAQ,EAAE,KAAK,CAAC,cAAc,EAC9B,WAAW,EAAE,KAAK,CAAC,iBAAiB,EACpC,OAAO,EAAE,KAAK,CAAC,YAAY,EAC3B,SAAS,EAAE,SAAS,GACpB,CACI,CACT,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,iBAAiB,CAAC,CAAA"}

package/dist/AddTrackWidget/index.js

@@ -4,7 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.configSchema = exports.stateModelFactory = void 0;
-var configuration_1 = require("@jbrowse/core/configuration");
+const configuration_1 = require("@jbrowse/core/configuration");
 var model_1 = require("./model");
 Object.defineProperty(exports, "stateModelFactory", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
 exports.configSchema = (0, configuration_1.ConfigurationSchema)('AddTrackWidget', {});

package/dist/AddTrackWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.js"],"names":[],"mappings":";;;;;;AAAA,6DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.js"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA"}