@jbrowse/plugin-data-management 2.0.0 → 2.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js +23 -40
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map +1 -1
- package/dist/AddConnectionWidget/components/ConfigureConnection.js +6 -6
- package/dist/AddConnectionWidget/components/ConfigureConnection.js.map +1 -1
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +7 -9
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js.map +1 -1
- package/dist/AddConnectionWidget/index.js +1 -1
- package/dist/AddConnectionWidget/index.js.map +1 -1
- package/dist/AddConnectionWidget/model.js +2 -2
- package/dist/AddConnectionWidget/model.js.map +1 -1
- package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +2 -2
- package/dist/AddTrackWidget/components/AddTrackWidget.js +24 -220
- package/dist/AddTrackWidget/components/AddTrackWidget.js.map +1 -1
- package/dist/AddTrackWidget/components/ConfirmTrack.js +72 -99
- package/dist/AddTrackWidget/components/ConfirmTrack.js.map +1 -1
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +7 -0
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +162 -0
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +1 -0
- package/dist/AddTrackWidget/components/TrackSourceSelect.js +11 -12
- package/dist/AddTrackWidget/components/TrackSourceSelect.js.map +1 -1
- package/dist/AddTrackWidget/index.js +1 -1
- package/dist/AddTrackWidget/index.js.map +1 -1
- package/dist/AddTrackWidget/model.js +34 -30
- package/dist/AddTrackWidget/model.js.map +1 -1
- package/dist/AssemblyManager/AssemblyAddForm.js +42 -61
- package/dist/AssemblyManager/AssemblyAddForm.js.map +1 -1
- package/dist/AssemblyManager/AssemblyEditor.js +4 -5
- package/dist/AssemblyManager/AssemblyEditor.js.map +1 -1
- package/dist/AssemblyManager/AssemblyManager.js +24 -41
- package/dist/AssemblyManager/AssemblyManager.js.map +1 -1
- package/dist/AssemblyManager/AssemblyTable.js +17 -18
- package/dist/AssemblyManager/AssemblyTable.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js +9 -29
- package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js +7 -8
- package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/Header.d.ts +10 -0
- package/dist/HierarchicalTrackSelectorWidget/components/Header.js +177 -0
- package/dist/HierarchicalTrackSelectorWidget/components/Header.js.map +1 -0
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +79 -365
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +17 -18
- package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/Node.d.ts +29 -0
- package/dist/HierarchicalTrackSelectorWidget/components/Node.js +173 -0
- package/dist/HierarchicalTrackSelectorWidget/components/Node.js.map +1 -0
- package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +19 -20
- package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +3 -0
- package/dist/HierarchicalTrackSelectorWidget/components/util.js +9 -0
- package/dist/HierarchicalTrackSelectorWidget/components/util.js.map +1 -0
- package/dist/HierarchicalTrackSelectorWidget/configSchema.d.ts +2 -0
- package/dist/HierarchicalTrackSelectorWidget/configSchema.js +6 -0
- package/dist/HierarchicalTrackSelectorWidget/configSchema.js.map +1 -0
- package/dist/HierarchicalTrackSelectorWidget/index.d.ts +4 -2
- package/dist/HierarchicalTrackSelectorWidget/index.js +4 -4
- package/dist/HierarchicalTrackSelectorWidget/index.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/model.d.ts +10 -2
- package/dist/HierarchicalTrackSelectorWidget/model.js +102 -153
- package/dist/HierarchicalTrackSelectorWidget/model.js.map +1 -1
- package/dist/PluginStoreWidget/components/CustomPluginForm.js +25 -43
- package/dist/PluginStoreWidget/components/CustomPluginForm.js.map +1 -1
- package/dist/PluginStoreWidget/components/InstalledPlugin.js +29 -47
- package/dist/PluginStoreWidget/components/InstalledPlugin.js.map +1 -1
- package/dist/PluginStoreWidget/components/InstalledPluginsList.js +12 -15
- package/dist/PluginStoreWidget/components/InstalledPluginsList.js.map +1 -1
- package/dist/PluginStoreWidget/components/PluginCard.js +23 -40
- package/dist/PluginStoreWidget/components/PluginCard.js.map +1 -1
- package/dist/PluginStoreWidget/components/PluginStoreWidget.js +49 -117
- package/dist/PluginStoreWidget/components/PluginStoreWidget.js.map +1 -1
- package/dist/PluginStoreWidget/index.js +1 -1
- package/dist/PluginStoreWidget/index.js.map +1 -1
- package/dist/PluginStoreWidget/model.js +6 -6
- package/dist/PluginStoreWidget/model.js.map +1 -1
- package/dist/SetDefaultSession/SetDefaultSession.js +9 -10
- package/dist/SetDefaultSession/SetDefaultSession.js.map +1 -1
- package/dist/index.d.ts +4 -1
- package/dist/index.js +38 -60
- package/dist/index.js.map +1 -1
- package/dist/ucsc-trackhub/configSchema.js +2 -2
- package/dist/ucsc-trackhub/configSchema.js.map +1 -1
- package/dist/ucsc-trackhub/model.js +33 -97
- package/dist/ucsc-trackhub/model.js.map +1 -1
- package/dist/ucsc-trackhub/ucscAssemblies.js +197 -1
- package/dist/ucsc-trackhub/ucscAssemblies.js.map +1 -1
- package/dist/ucsc-trackhub/ucscTrackHub.js +43 -132
- package/dist/ucsc-trackhub/ucscTrackHub.js.map +1 -1
- package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +2 -2
- package/esm/AddTrackWidget/components/AddTrackWidget.js +22 -135
- package/esm/AddTrackWidget/components/AddTrackWidget.js.map +1 -1
- package/esm/AddTrackWidget/components/ConfirmTrack.js +5 -6
- package/esm/AddTrackWidget/components/ConfirmTrack.js.map +1 -1
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +7 -0
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +134 -0
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +1 -0
- package/esm/HierarchicalTrackSelectorWidget/components/Header.d.ts +10 -0
- package/esm/HierarchicalTrackSelectorWidget/components/Header.js +149 -0
- package/esm/HierarchicalTrackSelectorWidget/components/Header.js.map +1 -0
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +24 -223
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/Node.d.ts +29 -0
- package/esm/HierarchicalTrackSelectorWidget/components/Node.js +144 -0
- package/esm/HierarchicalTrackSelectorWidget/components/Node.js.map +1 -0
- package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +3 -0
- package/esm/HierarchicalTrackSelectorWidget/components/util.js +5 -0
- package/esm/HierarchicalTrackSelectorWidget/components/util.js.map +1 -0
- package/esm/HierarchicalTrackSelectorWidget/configSchema.d.ts +2 -0
- package/esm/HierarchicalTrackSelectorWidget/configSchema.js +4 -0
- package/esm/HierarchicalTrackSelectorWidget/configSchema.js.map +1 -0
- package/esm/HierarchicalTrackSelectorWidget/index.d.ts +4 -2
- package/esm/HierarchicalTrackSelectorWidget/index.js +3 -3
- package/esm/HierarchicalTrackSelectorWidget/index.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/model.d.ts +10 -2
- package/esm/HierarchicalTrackSelectorWidget/model.js +36 -32
- package/esm/HierarchicalTrackSelectorWidget/model.js.map +1 -1
- package/esm/PluginStoreWidget/components/PluginStoreWidget.js +1 -2
- package/esm/PluginStoreWidget/components/PluginStoreWidget.js.map +1 -1
- package/esm/index.d.ts +4 -1
- package/esm/index.js +1 -1
- package/esm/index.js.map +1 -1
- package/package.json +4 -5
- package/src/AddConnectionWidget/components/__snapshots__/AddConnectionWidget.test.js.snap +7 -7
- package/src/AddTrackWidget/components/{AddTrackWidget.test.js → AddTrackWidget.test.tsx} +17 -32
- package/src/AddTrackWidget/components/AddTrackWidget.tsx +36 -200
- package/src/AddTrackWidget/components/ConfirmTrack.tsx +10 -10
- package/src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx +205 -0
- package/src/HierarchicalTrackSelectorWidget/components/Header.tsx +287 -0
- package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +5 -4
- package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.tsx +19 -438
- package/src/HierarchicalTrackSelectorWidget/components/Node.tsx +282 -0
- package/src/HierarchicalTrackSelectorWidget/components/__snapshots__/HierarchicalTrackSelector.test.js.snap +24 -48
- package/src/HierarchicalTrackSelectorWidget/components/util.ts +11 -0
- package/src/HierarchicalTrackSelectorWidget/configSchema.ts +3 -0
- package/src/HierarchicalTrackSelectorWidget/index.ts +4 -6
- package/src/HierarchicalTrackSelectorWidget/model.ts +45 -41
- package/src/PluginStoreWidget/components/PluginStoreWidget.test.js +16 -4
- package/src/PluginStoreWidget/components/PluginStoreWidget.tsx +1 -2
- package/src/PluginStoreWidget/components/__snapshots__/PluginStoreWidget.test.js.snap +111 -123
- package/src/index.ts +4 -1
- package/src/AddTrackWidget/components/__snapshots__/AddTrackWidget.test.js.snap +0 -331
|
@@ -22,36 +22,20 @@ var __importStar = (this && this.__importStar) || function (mod) {
|
|
|
22
22
|
__setModuleDefault(result, mod);
|
|
23
23
|
return result;
|
|
24
24
|
};
|
|
25
|
-
var __read = (this && this.__read) || function (o, n) {
|
|
26
|
-
var m = typeof Symbol === "function" && o[Symbol.iterator];
|
|
27
|
-
if (!m) return o;
|
|
28
|
-
var i = m.call(o), r, ar = [], e;
|
|
29
|
-
try {
|
|
30
|
-
while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
|
|
31
|
-
}
|
|
32
|
-
catch (error) { e = { error: error }; }
|
|
33
|
-
finally {
|
|
34
|
-
try {
|
|
35
|
-
if (r && !r.done && (m = i["return"])) m.call(i);
|
|
36
|
-
}
|
|
37
|
-
finally { if (e) throw e.error; }
|
|
38
|
-
}
|
|
39
|
-
return ar;
|
|
40
|
-
};
|
|
41
25
|
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
42
26
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
43
27
|
};
|
|
44
28
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
29
|
+
const react_1 = __importStar(require("react"));
|
|
30
|
+
const util_1 = require("@jbrowse/core/util");
|
|
31
|
+
const material_1 = require("@mui/material");
|
|
32
|
+
const mui_1 = require("tss-react/mui");
|
|
33
|
+
const mobx_react_1 = require("mobx-react");
|
|
34
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
51
35
|
// locals
|
|
52
|
-
|
|
53
|
-
|
|
54
|
-
|
|
36
|
+
const ConfigureConnection_1 = __importDefault(require("./ConfigureConnection"));
|
|
37
|
+
const ConnectionTypeSelect_1 = __importDefault(require("./ConnectionTypeSelect"));
|
|
38
|
+
const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
55
39
|
root: {
|
|
56
40
|
marginTop: theme.spacing(1),
|
|
57
41
|
},
|
|
@@ -65,21 +49,20 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
|
|
|
65
49
|
actionsContainer: {
|
|
66
50
|
marginBottom: theme.spacing(2),
|
|
67
51
|
},
|
|
68
|
-
})
|
|
69
|
-
|
|
70
|
-
function AddConnectionWidget(
|
|
71
|
-
|
|
72
|
-
|
|
73
|
-
|
|
74
|
-
|
|
75
|
-
|
|
76
|
-
|
|
77
|
-
|
|
78
|
-
var pluginManager = (0, mobx_state_tree_1.getEnv)(session).pluginManager;
|
|
52
|
+
}));
|
|
53
|
+
const steps = ['Select a Connection Type', 'Configure Connection'];
|
|
54
|
+
function AddConnectionWidget({ model }) {
|
|
55
|
+
const [connectionType, setConnectionType] = (0, react_1.useState)({});
|
|
56
|
+
const [configModel, setConfigModel] = (0, react_1.useState)({});
|
|
57
|
+
const [configModelReady, setConfigModelReady] = (0, react_1.useState)(true);
|
|
58
|
+
const [activeStep, setActiveStep] = (0, react_1.useState)(0);
|
|
59
|
+
const { classes } = useStyles();
|
|
60
|
+
const session = (0, util_1.getSession)(model);
|
|
61
|
+
const { pluginManager } = (0, mobx_state_tree_1.getEnv)(session);
|
|
79
62
|
function handleSetConnectionType(newConnectionType) {
|
|
80
63
|
setConnectionType(newConnectionType);
|
|
81
64
|
setConfigModel(newConnectionType.configSchema.create({
|
|
82
|
-
connectionId:
|
|
65
|
+
connectionId: `${newConnectionType.name}-${Date.now()}`,
|
|
83
66
|
}, (0, mobx_state_tree_1.getEnv)(model)));
|
|
84
67
|
}
|
|
85
68
|
function stepContent() {
|
|
@@ -104,7 +87,7 @@ function AddConnectionWidget(_a) {
|
|
|
104
87
|
setActiveStep(activeStep - 1);
|
|
105
88
|
}
|
|
106
89
|
function handleFinish() {
|
|
107
|
-
|
|
90
|
+
const connectionConf = session.addConnectionConf(configModel);
|
|
108
91
|
session.makeConnection(connectionConf);
|
|
109
92
|
session.hideWidget(model);
|
|
110
93
|
}
|
|
@@ -116,13 +99,13 @@ function AddConnectionWidget(_a) {
|
|
|
116
99
|
return false;
|
|
117
100
|
}
|
|
118
101
|
return (react_1.default.createElement("div", { className: classes.root },
|
|
119
|
-
react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(
|
|
102
|
+
react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(label => (react_1.default.createElement(material_1.Step, { key: label },
|
|
120
103
|
react_1.default.createElement(material_1.StepLabel, null, label),
|
|
121
104
|
react_1.default.createElement(material_1.StepContent, null,
|
|
122
105
|
stepContent(),
|
|
123
106
|
react_1.default.createElement("div", { className: classes.actionsContainer },
|
|
124
107
|
react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
|
|
125
|
-
react_1.default.createElement(material_1.Button, { disabled: !checkNextEnabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next')))))
|
|
108
|
+
react_1.default.createElement(material_1.Button, { disabled: !checkNextEnabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next')))))))));
|
|
126
109
|
}
|
|
127
110
|
AddConnectionWidget.propTypes = {
|
|
128
111
|
model: mobx_react_1.PropTypes.observableObject.isRequired,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"AddConnectionWidget.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/AddConnectionWidget.js"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"AddConnectionWidget.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/AddConnectionWidget.js"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,6CAA+C;AAC/C,4CAOsB;AACtB,uCAA0C;AAC1C,2CAAiE;AACjE,qDAAwC;AAExC,SAAS;AACT,gFAAuD;AACvD,kFAAyD;AAEzD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;IACD,OAAO,EAAE;QACP,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;KAClD;IACD,MAAM,EAAE;QACN,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC3B,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC9B;IACD,gBAAgB,EAAE;QAChB,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,KAAK,GAAG,CAAC,0BAA0B,EAAE,sBAAsB,CAAC,CAAA;AAElE,SAAS,mBAAmB,CAAC,EAAE,KAAK,EAAE;IACpC,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACxD,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IAClD,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IAC9D,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,CAAC,CAAA;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,wBAAM,EAAC,OAAO,CAAC,CAAA;IAEzC,SAAS,uBAAuB,CAAC,iBAAiB;QAChD,iBAAiB,CAAC,iBAAiB,CAAC,CAAA;QACpC,cAAc,CACZ,iBAAiB,CAAC,YAAY,CAAC,MAAM,CACnC;YACE,YAAY,EAAE,GAAG,iBAAiB,CAAC,IAAI,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;SACxD,EACD,IAAA,wBAAM,EAAC,KAAK,CAAC,CACd,CACF,CAAA;IACH,CAAC;IAED,SAAS,WAAW;QAClB,QAAQ,UAAU,EAAE;YAClB,KAAK,CAAC;gBACJ,OAAO,CACL,8BAAC,8BAAoB,IACnB,qBAAqB,EAAE,aAAa,CAAC,sBAAsB,CACzD,YAAY,CACb,EACD,cAAc,EAAE,cAAc,EAC9B,iBAAiB,EAAE,uBAAuB,GAC1C,CACH,CAAA;YACH,KAAK,CAAC;gBACJ,OAAO,CACL,8BAAC,6BAAmB,IAClB,cAAc,EAAE,cAAc,EAC9B,KAAK,EAAE,WAAW,EAClB,aAAa,EAAE,mBAAmB,GAClC,CACH,CAAA;YAEH;gBACE,OAAO,8BAAC,qBAAU,uBAA0B,CAAA;SAC/C;IACH,CAAC;IAED,SAAS,UAAU;QACjB,IAAI,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE;YACnC,YAAY,EAAE,CAAA;SACf;aAAM;YACL,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;SAC9B;IACH,CAAC;IAED,SAAS,UAAU;QACjB,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;IAC/B,CAAC;IAED,SAAS,YAAY;QACnB,MAAM,cAAc,GAAG,OAAO,CAAC,iBAAiB,CAAC,WAAW,CAAC,CAAA;QAC7D,OAAO,CAAC,cAAc,CAAC,cAAc,CAAC,CAAA;QACtC,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;IAC3B,CAAC;IAED,SAAS,gBAAgB;QACvB,IACE,CAAC,UAAU,KAAK,CAAC,IAAI,cAAc,CAAC,IAAI,CAAC;YACzC,CAAC,UAAU,KAAK,CAAC,IAAI,WAAW,IAAI,gBAAgB,CAAC,EACrD;YACA,OAAO,IAAI,CAAA;SACZ;QACD,OAAO,KAAK,CAAA;IACd,CAAC;IAED,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,UAAU,EAAE,UAAU,EACtB,WAAW,EAAC,UAAU,IAErB,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,8BAAC,eAAI,IAAC,GAAG,EAAE,KAAK;YACd,8BAAC,oBAAS,QAAE,KAAK,CAAa;YAC9B,8BAAC,sBAAW;gBACT,WAAW,EAAE;gBACd,uCAAK,SAAS,EAAE,OAAO,CAAC,gBAAgB;oBACtC,8BAAC,iBAAM,IACL,QAAQ,EAAE,UAAU,KAAK,CAAC,EAC1B,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,WAGlB;oBACT,8BAAC,iBAAM,IACL,QAAQ,EAAE,CAAC,gBAAgB,EAAE,EAC7B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,iBACb,mBAAmB,IAE9B,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAC9C,CACL,CACM,CACT,CACR,CAAC,CACM,CACN,CACP,CAAA;AACH,CAAC;AAED,mBAAmB,CAAC,SAAS,GAAG;IAC9B,KAAK,EAAE,sBAAa,CAAC,gBAAgB,CAAC,UAAU;CACjD,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,mBAAmB,CAAC,CAAA"}
|
|
@@ -23,12 +23,12 @@ var __importStar = (this && this.__importStar) || function (mod) {
|
|
|
23
23
|
return result;
|
|
24
24
|
};
|
|
25
25
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
|
|
26
|
+
const react_1 = __importStar(require("react"));
|
|
27
|
+
const plugin_config_1 = require("@jbrowse/plugin-config");
|
|
28
|
+
const mobx_react_1 = require("mobx-react");
|
|
29
|
+
const ConfigureConnection = (0, mobx_react_1.observer)(props => {
|
|
30
|
+
const { connectionType, model, setModelReady } = props;
|
|
31
|
+
const ConfigEditorComponent = connectionType.configEditorComponent || plugin_config_1.ConfigurationEditor;
|
|
32
32
|
return (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null, "Loading...") },
|
|
33
33
|
react_1.default.createElement(ConfigEditorComponent, { model: { target: model }, setModelReady: setModelReady })));
|
|
34
34
|
});
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ConfigureConnection.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConfigureConnection.js"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA
|
|
1
|
+
{"version":3,"file":"ConfigureConnection.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConfigureConnection.js"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,0DAA4D;AAC5D,2CAAqC;AAErC,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,KAAK,CAAC,EAAE;IAC3C,MAAM,EAAE,cAAc,EAAE,KAAK,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IACtD,MAAM,qBAAqB,GACzB,cAAc,CAAC,qBAAqB,IAAI,mCAAmB,CAAA;IAE7D,OAAO,CACL,8BAAC,gBAAQ,IAAC,QAAQ,EAAE,wDAAqB;QACvC,8BAAC,qBAAqB,IACpB,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,EACxB,aAAa,EAAE,aAAa,GAC5B,CACO,CACZ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}
|
|
@@ -26,20 +26,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
26
26
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
27
27
|
};
|
|
28
28
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
|
|
29
|
+
const react_1 = __importStar(require("react"));
|
|
30
|
+
const material_1 = require("@mui/material");
|
|
31
|
+
const OpenInNew_1 = __importDefault(require("@mui/icons-material/OpenInNew"));
|
|
32
32
|
function ConnectionTypeSelect(props) {
|
|
33
|
-
|
|
34
|
-
(0, react_1.useEffect)(
|
|
33
|
+
const { connectionTypeChoices, connectionType, setConnectionType } = props;
|
|
34
|
+
(0, react_1.useEffect)(() => {
|
|
35
35
|
if (!connectionType.name) {
|
|
36
36
|
setConnectionType(connectionTypeChoices[0]);
|
|
37
37
|
}
|
|
38
38
|
});
|
|
39
39
|
function handleChange(event) {
|
|
40
|
-
setConnectionType(connectionTypeChoices.find(
|
|
41
|
-
return connectionTypeChoice.name === event.target.value;
|
|
42
|
-
}));
|
|
40
|
+
setConnectionType(connectionTypeChoices.find((connectionTypeChoice) => connectionTypeChoice.name === event.target.value));
|
|
43
41
|
}
|
|
44
42
|
if (!connectionType.name) {
|
|
45
43
|
return null;
|
|
@@ -48,7 +46,7 @@ function ConnectionTypeSelect(props) {
|
|
|
48
46
|
react_1.default.createElement(material_1.TextField, { value: connectionType.name, label: "connectionType", helperText: connectionType.description ? (react_1.default.createElement(react_1.default.Fragment, null,
|
|
49
47
|
connectionType.description,
|
|
50
48
|
connectionType.url ? (react_1.default.createElement(material_1.IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank", color: "secondary" },
|
|
51
|
-
react_1.default.createElement(OpenInNew_1.default, null))) : null)) : null, select: true, fullWidth: true, onChange: handleChange, variant: "outlined" }, connectionTypeChoices.map(
|
|
49
|
+
react_1.default.createElement(OpenInNew_1.default, null))) : null)) : null, select: true, fullWidth: true, onChange: handleChange, variant: "outlined" }, connectionTypeChoices.map((connectionTypeChoice) => (react_1.default.createElement(material_1.MenuItem, { key: connectionTypeChoice.name, value: connectionTypeChoice.name }, connectionTypeChoice.displayName || connectionTypeChoice.name))))));
|
|
52
50
|
}
|
|
53
51
|
exports.default = ConnectionTypeSelect;
|
|
54
52
|
//# sourceMappingURL=ConnectionTypeSelect.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ConnectionTypeSelect.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConnectionTypeSelect.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA
|
|
1
|
+
{"version":3,"file":"ConnectionTypeSelect.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConnectionTypeSelect.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAwC;AACxC,4CAA+D;AAC/D,8EAAyD;AAIzD,SAAS,oBAAoB,CAAC,KAI7B;IACC,MAAM,EAAE,qBAAqB,EAAE,cAAc,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAE1E,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,CAAC,cAAc,CAAC,IAAI,EAAE;YACxB,iBAAiB,CAAC,qBAAqB,CAAC,CAAC,CAAC,CAAC,CAAA;SAC5C;IACH,CAAC,CAAC,CAAA;IAEF,SAAS,YAAY,CACnB,KAA2D;QAE3D,iBAAiB,CACf,qBAAqB,CAAC,IAAI,CACxB,CAAC,oBAAoC,EAAE,EAAE,CACvC,oBAAoB,CAAC,IAAI,KAAK,KAAK,CAAC,MAAM,CAAC,KAAK,CACnD,CACF,CAAA;IACH,CAAC;IACD,IAAI,CAAC,cAAc,CAAC,IAAI,EAAE;QACxB,OAAO,IAAI,CAAA;KACZ;IACD,OAAO,CACL,wCAAM,YAAY,EAAC,KAAK;QACtB,8BAAC,oBAAS,IACR,KAAK,EAAE,cAAc,CAAC,IAAI,EAC1B,KAAK,EAAC,gBAAgB,EACtB,UAAU,EACR,cAAc,CAAC,WAAW,CAAC,CAAC,CAAC,CAC3B;gBACG,cAAc,CAAC,WAAW;gBAC1B,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,CACpB,8BAAC,qBAAU,IACT,IAAI,EAAE,cAAc,CAAC,GAAG,EACxB,GAAG,EAAC,qBAAqB,EACzB,MAAM,EAAC,QAAQ,EACf,KAAK,EAAC,WAAW;oBAEjB,8BAAC,mBAAa,OAAG,CACN,CACd,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,EAEV,MAAM,QACN,SAAS,QACT,QAAQ,EAAE,YAAY,EACtB,OAAO,EAAC,UAAU,IAEjB,qBAAqB,CAAC,GAAG,CAAC,CAAC,oBAAoC,EAAE,EAAE,CAAC,CACnE,8BAAC,mBAAQ,IACP,GAAG,EAAE,oBAAoB,CAAC,IAAI,EAC9B,KAAK,EAAE,oBAAoB,CAAC,IAAI,IAE/B,oBAAoB,CAAC,WAAW,IAAI,oBAAoB,CAAC,IAAI,CACrD,CACZ,CAAC,CACQ,CACP,CACR,CAAA;AACH,CAAC;AAED,kBAAe,oBAAoB,CAAA"}
|
|
@@ -4,7 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
6
|
exports.configSchema = exports.stateModel = void 0;
|
|
7
|
-
|
|
7
|
+
const configuration_1 = require("@jbrowse/core/configuration");
|
|
8
8
|
var model_1 = require("./model");
|
|
9
9
|
Object.defineProperty(exports, "stateModel", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
|
|
10
10
|
exports.configSchema = (0, configuration_1.ConfigurationSchema)('AddConnectionWidget', {});
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.js"],"names":[],"mappings":";;;;;;AAAA
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.js"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAA+C;AAAtC,oHAAA,OAAO,OAAc;AACjB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA"}
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
|
|
4
|
-
|
|
3
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
4
|
+
const mst_1 = require("@jbrowse/core/util/types/mst");
|
|
5
5
|
exports.default = mobx_state_tree_1.types.model('AddConnectionModel', {
|
|
6
6
|
id: mst_1.ElementId,
|
|
7
7
|
type: mobx_state_tree_1.types.literal('AddConnectionWidget'),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.js"],"names":[],"mappings":";;AAAA,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.js"],"names":[],"mappings":";;AAAA,qDAAuC;AACvC,sDAAwD;AAExD,kBAAe,uBAAK,CAAC,KAAK,CAAC,oBAAoB,EAAE;IAC/C,EAAE,EAAE,eAAS;IACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;CAC3C,CAAC,CAAA"}
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
/// <reference types="react" />
|
|
2
2
|
import { AddTrackModel } from '../model';
|
|
3
|
-
declare function
|
|
3
|
+
declare function AddTrackSelector({ model }: {
|
|
4
4
|
model: AddTrackModel;
|
|
5
5
|
}): JSX.Element;
|
|
6
|
-
declare const _default: typeof
|
|
6
|
+
declare const _default: typeof AddTrackSelector;
|
|
7
7
|
export default _default;
|
|
@@ -1,227 +1,31 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
-
var __assign = (this && this.__assign) || function () {
|
|
3
|
-
__assign = Object.assign || function(t) {
|
|
4
|
-
for (var s, i = 1, n = arguments.length; i < n; i++) {
|
|
5
|
-
s = arguments[i];
|
|
6
|
-
for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
|
|
7
|
-
t[p] = s[p];
|
|
8
|
-
}
|
|
9
|
-
return t;
|
|
10
|
-
};
|
|
11
|
-
return __assign.apply(this, arguments);
|
|
12
|
-
};
|
|
13
|
-
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
14
|
-
if (k2 === undefined) k2 = k;
|
|
15
|
-
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
16
|
-
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
17
|
-
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
18
|
-
}
|
|
19
|
-
Object.defineProperty(o, k2, desc);
|
|
20
|
-
}) : (function(o, m, k, k2) {
|
|
21
|
-
if (k2 === undefined) k2 = k;
|
|
22
|
-
o[k2] = m[k];
|
|
23
|
-
}));
|
|
24
|
-
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
|
|
25
|
-
Object.defineProperty(o, "default", { enumerable: true, value: v });
|
|
26
|
-
}) : function(o, v) {
|
|
27
|
-
o["default"] = v;
|
|
28
|
-
});
|
|
29
|
-
var __importStar = (this && this.__importStar) || function (mod) {
|
|
30
|
-
if (mod && mod.__esModule) return mod;
|
|
31
|
-
var result = {};
|
|
32
|
-
if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
|
|
33
|
-
__setModuleDefault(result, mod);
|
|
34
|
-
return result;
|
|
35
|
-
};
|
|
36
|
-
var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
|
|
37
|
-
function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
|
|
38
|
-
return new (P || (P = Promise))(function (resolve, reject) {
|
|
39
|
-
function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
|
|
40
|
-
function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
|
|
41
|
-
function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
|
|
42
|
-
step((generator = generator.apply(thisArg, _arguments || [])).next());
|
|
43
|
-
});
|
|
44
|
-
};
|
|
45
|
-
var __generator = (this && this.__generator) || function (thisArg, body) {
|
|
46
|
-
var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
|
|
47
|
-
return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
|
|
48
|
-
function verb(n) { return function (v) { return step([n, v]); }; }
|
|
49
|
-
function step(op) {
|
|
50
|
-
if (f) throw new TypeError("Generator is already executing.");
|
|
51
|
-
while (_) try {
|
|
52
|
-
if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
|
|
53
|
-
if (y = 0, t) op = [op[0] & 2, t.value];
|
|
54
|
-
switch (op[0]) {
|
|
55
|
-
case 0: case 1: t = op; break;
|
|
56
|
-
case 4: _.label++; return { value: op[1], done: false };
|
|
57
|
-
case 5: _.label++; y = op[1]; op = [0]; continue;
|
|
58
|
-
case 7: op = _.ops.pop(); _.trys.pop(); continue;
|
|
59
|
-
default:
|
|
60
|
-
if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
|
|
61
|
-
if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
|
|
62
|
-
if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
|
|
63
|
-
if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
|
|
64
|
-
if (t[2]) _.ops.pop();
|
|
65
|
-
_.trys.pop(); continue;
|
|
66
|
-
}
|
|
67
|
-
op = body.call(thisArg, _);
|
|
68
|
-
} catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
|
|
69
|
-
if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
|
|
70
|
-
}
|
|
71
|
-
};
|
|
72
|
-
var __read = (this && this.__read) || function (o, n) {
|
|
73
|
-
var m = typeof Symbol === "function" && o[Symbol.iterator];
|
|
74
|
-
if (!m) return o;
|
|
75
|
-
var i = m.call(o), r, ar = [], e;
|
|
76
|
-
try {
|
|
77
|
-
while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
|
|
78
|
-
}
|
|
79
|
-
catch (error) { e = { error: error }; }
|
|
80
|
-
finally {
|
|
81
|
-
try {
|
|
82
|
-
if (r && !r.done && (m = i["return"])) m.call(i);
|
|
83
|
-
}
|
|
84
|
-
finally { if (e) throw e.error; }
|
|
85
|
-
}
|
|
86
|
-
return ar;
|
|
87
|
-
};
|
|
88
2
|
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
89
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
90
4
|
};
|
|
91
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
92
|
-
|
|
93
|
-
|
|
94
|
-
|
|
95
|
-
|
|
96
|
-
|
|
97
|
-
|
|
98
|
-
|
|
99
|
-
|
|
100
|
-
|
|
101
|
-
|
|
102
|
-
|
|
103
|
-
|
|
104
|
-
|
|
105
|
-
}
|
|
106
|
-
|
|
107
|
-
|
|
108
|
-
|
|
109
|
-
|
|
110
|
-
|
|
111
|
-
|
|
112
|
-
|
|
113
|
-
|
|
114
|
-
|
|
115
|
-
},
|
|
116
|
-
stepContent: {
|
|
117
|
-
margin: theme.spacing(1),
|
|
118
|
-
},
|
|
119
|
-
alertContainer: {
|
|
120
|
-
padding: "".concat(theme.spacing(2), "px 0px ").concat(theme.spacing(2), "px 0px"),
|
|
121
|
-
},
|
|
122
|
-
}); });
|
|
123
|
-
var steps = ['Enter track data', 'Confirm track type'];
|
|
124
|
-
function AddTrackWidget(_a) {
|
|
125
|
-
var model = _a.model;
|
|
126
|
-
var _b = __read((0, react_1.useState)(0), 2), activeStep = _b[0], setActiveStep = _b[1];
|
|
127
|
-
var classes = useStyles().classes;
|
|
128
|
-
var session = (0, util_1.getSession)(model);
|
|
129
|
-
var pluginManager = (0, mobx_state_tree_1.getEnv)(session).pluginManager;
|
|
130
|
-
var rootModel = pluginManager.rootModel;
|
|
131
|
-
var jobsManager = rootModel.jobsManager;
|
|
132
|
-
var assembly = model.assembly, trackAdapter = model.trackAdapter, trackData = model.trackData, trackName = model.trackName, trackType = model.trackType, textIndexTrack = model.textIndexTrack, textIndexingConf = model.textIndexingConf;
|
|
133
|
-
var _c = __read((0, react_1.useState)(), 2), trackErrorMessage = _c[0], setTrackErrorMessage = _c[1];
|
|
134
|
-
function getStepContent(step) {
|
|
135
|
-
switch (step) {
|
|
136
|
-
case 0:
|
|
137
|
-
return react_1.default.createElement(TrackSourceSelect_1.default, { model: model });
|
|
138
|
-
case 1:
|
|
139
|
-
return react_1.default.createElement(ConfirmTrack_1.default, { model: model });
|
|
140
|
-
default:
|
|
141
|
-
return react_1.default.createElement(material_1.Typography, null, "Unknown step");
|
|
142
|
-
}
|
|
143
|
-
}
|
|
144
|
-
function handleNext() {
|
|
145
|
-
return __awaiter(this, void 0, void 0, function () {
|
|
146
|
-
var trackId, assemblyInstance, textSearchingDefault, attr, indexName, indexingParams, newEntry;
|
|
147
|
-
return __generator(this, function (_a) {
|
|
148
|
-
if (activeStep !== steps.length - 1) {
|
|
149
|
-
setActiveStep(activeStep + 1);
|
|
150
|
-
return [2 /*return*/];
|
|
151
|
-
}
|
|
152
|
-
trackId = "".concat(trackName
|
|
153
|
-
.toLowerCase()
|
|
154
|
-
.replace(/ /g, '_'), "-").concat(Date.now()).concat(session.adminMode ? '' : '-sessionTrack');
|
|
155
|
-
assemblyInstance = session.assemblyManager.get(assembly);
|
|
156
|
-
if (trackAdapter && trackAdapter.type !== 'UNKNOWN') {
|
|
157
|
-
// @ts-ignore
|
|
158
|
-
session.addTrackConf({
|
|
159
|
-
trackId: trackId,
|
|
160
|
-
type: trackType,
|
|
161
|
-
name: trackName,
|
|
162
|
-
assemblyNames: [assembly],
|
|
163
|
-
adapter: __assign(__assign({}, trackAdapter), { sequenceAdapter: (0, configuration_1.getConf)(assemblyInstance, ['sequence', 'adapter']) }),
|
|
164
|
-
});
|
|
165
|
-
textSearchingDefault = {
|
|
166
|
-
attributes: ['Name', 'ID'],
|
|
167
|
-
exclude: ['CDS', 'exon'],
|
|
168
|
-
};
|
|
169
|
-
if (model.view) {
|
|
170
|
-
model.view.showTrack(trackId);
|
|
171
|
-
if (util_1.isElectron) {
|
|
172
|
-
if (textIndexTrack && (0, util_1.supportedIndexingAdapters)(trackAdapter.type)) {
|
|
173
|
-
attr = textIndexingConf || textSearchingDefault;
|
|
174
|
-
indexName = trackName + '-index';
|
|
175
|
-
indexingParams = __assign(__assign({}, attr), { assemblies: [assembly], tracks: [trackId], indexType: 'perTrack', name: indexName, timestamp: new Date().toISOString() });
|
|
176
|
-
newEntry = {
|
|
177
|
-
indexingParams: indexingParams,
|
|
178
|
-
name: indexName,
|
|
179
|
-
cancelCallback: function () {
|
|
180
|
-
jobsManager.abortJob();
|
|
181
|
-
},
|
|
182
|
-
};
|
|
183
|
-
jobsManager.queueJob(newEntry);
|
|
184
|
-
}
|
|
185
|
-
}
|
|
186
|
-
}
|
|
187
|
-
else {
|
|
188
|
-
session.notify('Open a new view, or use the track selector in an existing view, to view this track', 'info');
|
|
189
|
-
}
|
|
190
|
-
model.clearData();
|
|
191
|
-
// @ts-ignore
|
|
192
|
-
session.hideWidget(model);
|
|
193
|
-
}
|
|
194
|
-
else {
|
|
195
|
-
setTrackErrorMessage('Failed to add track.\nThe configuration of this file is not currently supported.');
|
|
196
|
-
}
|
|
197
|
-
return [2 /*return*/];
|
|
198
|
-
});
|
|
199
|
-
});
|
|
200
|
-
}
|
|
201
|
-
function handleBack() {
|
|
202
|
-
setTrackErrorMessage(undefined);
|
|
203
|
-
setActiveStep(activeStep - 1);
|
|
204
|
-
}
|
|
205
|
-
function isNextDisabled() {
|
|
206
|
-
switch (activeStep) {
|
|
207
|
-
case 0:
|
|
208
|
-
return !trackData;
|
|
209
|
-
case 1:
|
|
210
|
-
return !(trackName && trackType && (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) && assembly);
|
|
211
|
-
default:
|
|
212
|
-
return true;
|
|
213
|
-
}
|
|
214
|
-
}
|
|
215
|
-
return (react_1.default.createElement("div", { className: classes.root },
|
|
216
|
-
react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(function (label, idx) { return (react_1.default.createElement(material_1.Step, { key: label },
|
|
217
|
-
react_1.default.createElement(material_1.StepLabel, null, label),
|
|
218
|
-
react_1.default.createElement(material_1.StepContent, null,
|
|
219
|
-
getStepContent(idx),
|
|
220
|
-
react_1.default.createElement("div", { className: classes.actionsContainer },
|
|
221
|
-
react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
|
|
222
|
-
react_1.default.createElement(material_1.Button, { disabled: isNextDisabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addTrackNextButton" }, activeStep === steps.length - 1 ? 'Add' : 'Next')),
|
|
223
|
-
trackErrorMessage ? (react_1.default.createElement("div", { className: classes.alertContainer },
|
|
224
|
-
react_1.default.createElement(material_1.Alert, { severity: "error" }, trackErrorMessage))) : null))); }))));
|
|
6
|
+
const react_1 = __importDefault(require("react"));
|
|
7
|
+
const mobx_react_1 = require("mobx-react");
|
|
8
|
+
const material_1 = require("@mui/material");
|
|
9
|
+
const util_1 = require("@jbrowse/core/util");
|
|
10
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
11
|
+
const DefaultAddTrackWorkflow_1 = __importDefault(require("./DefaultAddTrackWorkflow"));
|
|
12
|
+
function AddTrackSelector({ model }) {
|
|
13
|
+
const [val, setVal] = (0, util_1.useLocalStorage)('trackSelector-choice', 'Default');
|
|
14
|
+
const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
|
|
15
|
+
const widgets = pluginManager.getElementTypesInGroup('add track workflow');
|
|
16
|
+
const ComponentMap = {
|
|
17
|
+
Default: DefaultAddTrackWorkflow_1.default,
|
|
18
|
+
...Object.fromEntries(widgets.map(w => [w.name, w.ReactComponent])),
|
|
19
|
+
};
|
|
20
|
+
// make sure the selected value is in the list
|
|
21
|
+
const val2 = ComponentMap[val] ? val : 'Default';
|
|
22
|
+
const Component = ComponentMap[val2];
|
|
23
|
+
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
24
|
+
react_1.default.createElement(material_1.FormControl, null,
|
|
25
|
+
react_1.default.createElement(material_1.Select, { value: val2, onChange: event => setVal(event.target.value) }, Object.keys(ComponentMap).map(e => (react_1.default.createElement(material_1.MenuItem, { key: e, value: e }, e)))),
|
|
26
|
+
react_1.default.createElement(material_1.FormHelperText, null, "Type of add track workflow")),
|
|
27
|
+
react_1.default.createElement("br", null),
|
|
28
|
+
react_1.default.createElement(Component, { model: model })));
|
|
225
29
|
}
|
|
226
|
-
exports.default = (0, mobx_react_1.observer)(
|
|
30
|
+
exports.default = (0, mobx_react_1.observer)(AddTrackSelector);
|
|
227
31
|
//# sourceMappingURL=AddTrackWidget.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA6E;AAE7E,6CAAoD;AACpD,qDAAwC;AAIxC,wFAA+D;AAE/D,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,sBAAe,EAAC,sBAAsB,EAAE,SAAS,CAAC,CAAA;IACxE,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,wBAAM,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,OAAO,GAAG,aAAa,CAAC,sBAAsB,CAClD,oBAAoB,CACK,CAAA;IAC3B,MAAM,YAAY,GAAG;QACnB,OAAO,EAAE,iCAAuB;QAChC,GAAG,MAAM,CAAC,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;KACX,CAAA;IAE1D,8CAA8C;IAC9C,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAA;IAChD,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IACpC,OAAO,CACL;QACE,8BAAC,sBAAW;YACV,8BAAC,iBAAM,IAAC,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAC/D,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAClC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,IACvB,CAAC,CACO,CACZ,CAAC,CACK;YACT,8BAAC,yBAAc,qCAA4C,CAC/C;QAEd,yCAAM;QACN,8BAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,gBAAgB,CAAC,CAAA"}
|