@jbrowse/plugin-data-management 2.0.0 → 2.1.2

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Files changed (140) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +23 -40
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map +1 -1
  3. package/dist/AddConnectionWidget/components/ConfigureConnection.js +6 -6
  4. package/dist/AddConnectionWidget/components/ConfigureConnection.js.map +1 -1
  5. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +7 -9
  6. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js.map +1 -1
  7. package/dist/AddConnectionWidget/index.js +1 -1
  8. package/dist/AddConnectionWidget/index.js.map +1 -1
  9. package/dist/AddConnectionWidget/model.js +2 -2
  10. package/dist/AddConnectionWidget/model.js.map +1 -1
  11. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +2 -2
  12. package/dist/AddTrackWidget/components/AddTrackWidget.js +24 -220
  13. package/dist/AddTrackWidget/components/AddTrackWidget.js.map +1 -1
  14. package/dist/AddTrackWidget/components/ConfirmTrack.js +72 -99
  15. package/dist/AddTrackWidget/components/ConfirmTrack.js.map +1 -1
  16. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +7 -0
  17. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +162 -0
  18. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +1 -0
  19. package/dist/AddTrackWidget/components/TrackSourceSelect.js +11 -12
  20. package/dist/AddTrackWidget/components/TrackSourceSelect.js.map +1 -1
  21. package/dist/AddTrackWidget/index.js +1 -1
  22. package/dist/AddTrackWidget/index.js.map +1 -1
  23. package/dist/AddTrackWidget/model.js +34 -30
  24. package/dist/AddTrackWidget/model.js.map +1 -1
  25. package/dist/AssemblyManager/AssemblyAddForm.js +42 -61
  26. package/dist/AssemblyManager/AssemblyAddForm.js.map +1 -1
  27. package/dist/AssemblyManager/AssemblyEditor.js +4 -5
  28. package/dist/AssemblyManager/AssemblyEditor.js.map +1 -1
  29. package/dist/AssemblyManager/AssemblyManager.js +24 -41
  30. package/dist/AssemblyManager/AssemblyManager.js.map +1 -1
  31. package/dist/AssemblyManager/AssemblyTable.js +17 -18
  32. package/dist/AssemblyManager/AssemblyTable.js.map +1 -1
  33. package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js +9 -29
  34. package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js.map +1 -1
  35. package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js +7 -8
  36. package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js.map +1 -1
  37. package/dist/HierarchicalTrackSelectorWidget/components/Header.d.ts +10 -0
  38. package/dist/HierarchicalTrackSelectorWidget/components/Header.js +177 -0
  39. package/dist/HierarchicalTrackSelectorWidget/components/Header.js.map +1 -0
  40. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +79 -365
  41. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map +1 -1
  42. package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +17 -18
  43. package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map +1 -1
  44. package/dist/HierarchicalTrackSelectorWidget/components/Node.d.ts +29 -0
  45. package/dist/HierarchicalTrackSelectorWidget/components/Node.js +173 -0
  46. package/dist/HierarchicalTrackSelectorWidget/components/Node.js.map +1 -0
  47. package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +19 -20
  48. package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map +1 -1
  49. package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +3 -0
  50. package/dist/HierarchicalTrackSelectorWidget/components/util.js +9 -0
  51. package/dist/HierarchicalTrackSelectorWidget/components/util.js.map +1 -0
  52. package/dist/HierarchicalTrackSelectorWidget/configSchema.d.ts +2 -0
  53. package/dist/HierarchicalTrackSelectorWidget/configSchema.js +6 -0
  54. package/dist/HierarchicalTrackSelectorWidget/configSchema.js.map +1 -0
  55. package/dist/HierarchicalTrackSelectorWidget/index.d.ts +4 -2
  56. package/dist/HierarchicalTrackSelectorWidget/index.js +4 -4
  57. package/dist/HierarchicalTrackSelectorWidget/index.js.map +1 -1
  58. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +10 -2
  59. package/dist/HierarchicalTrackSelectorWidget/model.js +102 -153
  60. package/dist/HierarchicalTrackSelectorWidget/model.js.map +1 -1
  61. package/dist/PluginStoreWidget/components/CustomPluginForm.js +25 -43
  62. package/dist/PluginStoreWidget/components/CustomPluginForm.js.map +1 -1
  63. package/dist/PluginStoreWidget/components/InstalledPlugin.js +29 -47
  64. package/dist/PluginStoreWidget/components/InstalledPlugin.js.map +1 -1
  65. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +12 -15
  66. package/dist/PluginStoreWidget/components/InstalledPluginsList.js.map +1 -1
  67. package/dist/PluginStoreWidget/components/PluginCard.js +23 -40
  68. package/dist/PluginStoreWidget/components/PluginCard.js.map +1 -1
  69. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +49 -117
  70. package/dist/PluginStoreWidget/components/PluginStoreWidget.js.map +1 -1
  71. package/dist/PluginStoreWidget/index.js +1 -1
  72. package/dist/PluginStoreWidget/index.js.map +1 -1
  73. package/dist/PluginStoreWidget/model.js +6 -6
  74. package/dist/PluginStoreWidget/model.js.map +1 -1
  75. package/dist/SetDefaultSession/SetDefaultSession.js +9 -10
  76. package/dist/SetDefaultSession/SetDefaultSession.js.map +1 -1
  77. package/dist/index.d.ts +4 -1
  78. package/dist/index.js +38 -60
  79. package/dist/index.js.map +1 -1
  80. package/dist/ucsc-trackhub/configSchema.js +2 -2
  81. package/dist/ucsc-trackhub/configSchema.js.map +1 -1
  82. package/dist/ucsc-trackhub/model.js +33 -97
  83. package/dist/ucsc-trackhub/model.js.map +1 -1
  84. package/dist/ucsc-trackhub/ucscAssemblies.js +197 -1
  85. package/dist/ucsc-trackhub/ucscAssemblies.js.map +1 -1
  86. package/dist/ucsc-trackhub/ucscTrackHub.js +43 -132
  87. package/dist/ucsc-trackhub/ucscTrackHub.js.map +1 -1
  88. package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +2 -2
  89. package/esm/AddTrackWidget/components/AddTrackWidget.js +22 -135
  90. package/esm/AddTrackWidget/components/AddTrackWidget.js.map +1 -1
  91. package/esm/AddTrackWidget/components/ConfirmTrack.js +5 -6
  92. package/esm/AddTrackWidget/components/ConfirmTrack.js.map +1 -1
  93. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +7 -0
  94. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +134 -0
  95. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +1 -0
  96. package/esm/HierarchicalTrackSelectorWidget/components/Header.d.ts +10 -0
  97. package/esm/HierarchicalTrackSelectorWidget/components/Header.js +149 -0
  98. package/esm/HierarchicalTrackSelectorWidget/components/Header.js.map +1 -0
  99. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +24 -223
  100. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map +1 -1
  101. package/esm/HierarchicalTrackSelectorWidget/components/Node.d.ts +29 -0
  102. package/esm/HierarchicalTrackSelectorWidget/components/Node.js +144 -0
  103. package/esm/HierarchicalTrackSelectorWidget/components/Node.js.map +1 -0
  104. package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +3 -0
  105. package/esm/HierarchicalTrackSelectorWidget/components/util.js +5 -0
  106. package/esm/HierarchicalTrackSelectorWidget/components/util.js.map +1 -0
  107. package/esm/HierarchicalTrackSelectorWidget/configSchema.d.ts +2 -0
  108. package/esm/HierarchicalTrackSelectorWidget/configSchema.js +4 -0
  109. package/esm/HierarchicalTrackSelectorWidget/configSchema.js.map +1 -0
  110. package/esm/HierarchicalTrackSelectorWidget/index.d.ts +4 -2
  111. package/esm/HierarchicalTrackSelectorWidget/index.js +3 -3
  112. package/esm/HierarchicalTrackSelectorWidget/index.js.map +1 -1
  113. package/esm/HierarchicalTrackSelectorWidget/model.d.ts +10 -2
  114. package/esm/HierarchicalTrackSelectorWidget/model.js +36 -32
  115. package/esm/HierarchicalTrackSelectorWidget/model.js.map +1 -1
  116. package/esm/PluginStoreWidget/components/PluginStoreWidget.js +1 -2
  117. package/esm/PluginStoreWidget/components/PluginStoreWidget.js.map +1 -1
  118. package/esm/index.d.ts +4 -1
  119. package/esm/index.js +1 -1
  120. package/esm/index.js.map +1 -1
  121. package/package.json +4 -5
  122. package/src/AddConnectionWidget/components/__snapshots__/AddConnectionWidget.test.js.snap +7 -7
  123. package/src/AddTrackWidget/components/{AddTrackWidget.test.js → AddTrackWidget.test.tsx} +17 -32
  124. package/src/AddTrackWidget/components/AddTrackWidget.tsx +36 -200
  125. package/src/AddTrackWidget/components/ConfirmTrack.tsx +10 -10
  126. package/src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx +205 -0
  127. package/src/HierarchicalTrackSelectorWidget/components/Header.tsx +287 -0
  128. package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +5 -4
  129. package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.tsx +19 -438
  130. package/src/HierarchicalTrackSelectorWidget/components/Node.tsx +282 -0
  131. package/src/HierarchicalTrackSelectorWidget/components/__snapshots__/HierarchicalTrackSelector.test.js.snap +24 -48
  132. package/src/HierarchicalTrackSelectorWidget/components/util.ts +11 -0
  133. package/src/HierarchicalTrackSelectorWidget/configSchema.ts +3 -0
  134. package/src/HierarchicalTrackSelectorWidget/index.ts +4 -6
  135. package/src/HierarchicalTrackSelectorWidget/model.ts +45 -41
  136. package/src/PluginStoreWidget/components/PluginStoreWidget.test.js +16 -4
  137. package/src/PluginStoreWidget/components/PluginStoreWidget.tsx +1 -2
  138. package/src/PluginStoreWidget/components/__snapshots__/PluginStoreWidget.test.js.snap +111 -123
  139. package/src/index.ts +4 -1
  140. package/src/AddTrackWidget/components/__snapshots__/AddTrackWidget.test.js.snap +0 -331
@@ -1,6 +1,8 @@
1
1
  import React from 'react'
2
2
  import { getSnapshot, getParent } from 'mobx-state-tree'
3
+ import { ThemeProvider } from '@mui/material/styles'
3
4
  import { render, cleanup, fireEvent, waitFor } from '@testing-library/react'
5
+ import { createJBrowseTheme } from '@jbrowse/core/ui'
4
6
  import { createTestSession } from '@jbrowse/web/src/rootModel'
5
7
 
6
8
  import PluginStoreWidget from './PluginStoreWidget'
@@ -42,14 +44,20 @@ describe('<PluginStoreWidget />', () => {
42
44
 
43
45
  it('renders with the available plugins', async () => {
44
46
  const { container, findByText } = render(
45
- <PluginStoreWidget model={model} />,
47
+ <ThemeProvider theme={createJBrowseTheme()}>
48
+ <PluginStoreWidget model={model} />
49
+ </ThemeProvider>,
46
50
  )
47
51
  await findByText('multiple sequence alignment browser plugin for JBrowse 2')
48
52
  expect(container.firstChild).toMatchSnapshot()
49
53
  })
50
54
 
51
55
  it('Installs a session plugin', async () => {
52
- const { findByText } = render(<PluginStoreWidget model={model} />)
56
+ const { findByText } = render(
57
+ <ThemeProvider theme={createJBrowseTheme()}>
58
+ <PluginStoreWidget model={model} />
59
+ </ThemeProvider>,
60
+ )
53
61
  await findByText('multiple sequence alignment browser plugin for JBrowse 2')
54
62
  fireEvent.click(await findByText('Install'))
55
63
  await waitFor(() => {
@@ -62,7 +70,9 @@ describe('<PluginStoreWidget />', () => {
62
70
  session = createTestSession({}, true)
63
71
  model = session.addWidget('PluginStoreWidget', 'pluginStoreWidget')
64
72
  const { findByText, getByText, getByLabelText } = render(
65
- <PluginStoreWidget model={model} />,
73
+ <ThemeProvider theme={createJBrowseTheme()}>
74
+ <PluginStoreWidget model={model} />
75
+ </ThemeProvider>,
66
76
  )
67
77
  await findByText('multiple sequence alignment browser plugin for JBrowse 2')
68
78
  fireEvent.click(getByText('Add custom plugin'))
@@ -99,7 +109,9 @@ describe('<PluginStoreWidget />', () => {
99
109
  const { jbrowse } = rootModel
100
110
  jbrowse.addPlugin(plugins.plugins[0])
101
111
  const { findByText, getByText, getByTestId } = render(
102
- <PluginStoreWidget model={model} />,
112
+ <ThemeProvider theme={createJBrowseTheme()}>
113
+ <PluginStoreWidget model={model} />
114
+ </ThemeProvider>,
103
115
  )
104
116
  await findByText('multiple sequence alignment browser plugin for JBrowse 2')
105
117
  fireEvent.click(getByTestId('removePlugin-SVGPlugin'))
@@ -37,8 +37,7 @@ const useStyles = makeStyles()(theme => ({
37
37
  adminBadge: {
38
38
  margin: '0.5em',
39
39
  borderRadius: 3,
40
- // this is the quaternary color in JB2 palette
41
- backgroundColor: '#FFB11D',
40
+ backgroundColor: theme.palette.quaternary.main,
42
41
  padding: '1em',
43
42
  display: 'flex',
44
43
  alignContent: 'center',