@jbrowse/core 2.0.0 → 2.1.2

package/ReExports/Attributes.js

@@ -1,12 +1,5 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _BaseFeatureDetail = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
-
+Object.defineProperty(exports, "__esModule", { value: true });
 // convert named export to default for lazy react
-var _default = _BaseFeatureDetail.Attributes;
-exports.default = _default;
+const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
+exports.default = BaseFeatureDetail_1.Attributes;

package/ReExports/BaseCard.js

@@ -1,12 +1,5 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _BaseFeatureDetail = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
-
+Object.defineProperty(exports, "__esModule", { value: true });
 // convert named export to default for lazy react
-var _default = _BaseFeatureDetail.BaseCard;
-exports.default = _default;
+const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
+exports.default = BaseFeatureDetail_1.BaseCard;

package/ReExports/DataGrid.js

@@ -1,13 +1,6 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-Object.defineProperty(exports, "default", {
-  enumerable: true,
-  get: function get() {
-    return _xDataGrid.DataGrid;
-  }
-});
-
-var _xDataGrid = require("@mui/x-data-grid");
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = void 0;
+// convert named export to default for lazy react
+const x_data_grid_1 = require("@mui/x-data-grid");
+Object.defineProperty(exports, "default", { enumerable: true, get: function () { return x_data_grid_1.DataGrid; } });

package/ReExports/FeatureDetails.js

@@ -1,12 +1,5 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _BaseFeatureDetail = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
-
+Object.defineProperty(exports, "__esModule", { value: true });
 // convert named export to default for lazy react
-var _default = _BaseFeatureDetail.FeatureDetails;
-exports.default = _default;
+const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
+exports.default = BaseFeatureDetail_1.FeatureDetails;

package/ReExports/index.js

@@ -1,13 +1,7 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _modules = _interopRequireDefault(require("./modules"));
-
-var _default = _modules.default;
-exports.default = _default;
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const modules_1 = __importDefault(require("./modules"));
+exports.default = modules_1.default;

package/ReExports/list.d.ts

@@ -1,2 +1,7 @@
+/**
+ * Used by plugin build systems to determine if a module is provided by JBrowse
+ * globally and thus doesn't need to be bundled. A check in ./modules.tsx makes
+ * sure this is in sync with the re-exported modules.
+ */
 declare const _default: string[];
 export default _default;

package/ReExports/list.js

@@ -1,8 +1,272 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-var _default = ['mobx', 'mobx-state-tree', 'react', 'react-dom', 'mobx-react', 'prop-types', '@jbrowse/core/Plugin', '@jbrowse/core/pluggableElementTypes', '@jbrowse/core/pluggableElementTypes/ViewType', '@jbrowse/core/pluggableElementTypes/AdapterType', '@jbrowse/core/pluggableElementTypes/DisplayType', '@jbrowse/core/pluggableElementTypes/TrackType', '@jbrowse/core/pluggableElementTypes/WidgetType', '@jbrowse/core/pluggableElementTypes/models', '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType', '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType', '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType', '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType', '@jbrowse/core/pluggableElementTypes/renderers/RendererType', '@jbrowse/core/configuration', '@jbrowse/core/util/types/mst', '@jbrowse/core/ui', '@jbrowse/core/util', '@jbrowse/core/util/color', '@jbrowse/core/util/layouts', '@jbrowse/core/util/tracks', '@jbrowse/core/util/Base1DViewModel', '@jbrowse/core/util/io', '@jbrowse/core/util/mst-reflection', '@jbrowse/core/util/rxjs', '@jbrowse/core/data_adapters/BaseAdapter'];
-exports.default = _default;
+Object.defineProperty(exports, "__esModule", { value: true });
+/**
+ * Used by plugin build systems to determine if a module is provided by JBrowse
+ * globally and thus doesn't need to be bundled. A check in ./modules.tsx makes
+ * sure this is in sync with the re-exported modules.
+ */
+exports.default = [
+    'mobx',
+    'mobx-state-tree',
+    'react',
+    'react-dom',
+    'mobx-react',
+    '@mui/x-data-grid',
+    '@mui/material/utils',
+    '@material-ui/core/utils',
+    'tss-react/mui',
+    '@material-ui/core',
+    '@mui/material',
+    'prop-types',
+    '@mui/material/styles',
+    '@material-ui/core/styles',
+    '@material-ui/core/Accordion',
+    '@material-ui/core/AccordionActions',
+    '@material-ui/core/AccordionDetails',
+    '@material-ui/core/Alert',
+    '@material-ui/core/AlertTitle',
+    '@material-ui/core/Autocomplete',
+    '@material-ui/core/Avatar',
+    '@material-ui/core/AvatarGroup',
+    '@material-ui/core/Backdrop',
+    '@material-ui/core/Badge',
+    '@material-ui/core/Box',
+    '@material-ui/core/Breadcrumbs',
+    '@material-ui/core/Button',
+    '@material-ui/core/ButtonGroup',
+    '@material-ui/core/Card',
+    '@material-ui/core/CardActions',
+    '@material-ui/core/CardActionArea',
+    '@material-ui/core/CardContent',
+    '@material-ui/core/CardHeader',
+    '@material-ui/core/CardMedia',
+    '@material-ui/core/CircularProgress',
+    '@material-ui/core/Collapse',
+    '@material-ui/core/ClickAwayListener',
+    '@material-ui/core/Chip',
+    '@material-ui/core/Checkbox',
+    '@material-ui/core/Container',
+    '@material-ui/core/Dialog',
+    '@material-ui/core/DialogActions',
+    '@material-ui/core/DialogTitle',
+    '@material-ui/core/DialogContent',
+    '@material-ui/core/DialogContentText',
+    '@material-ui/core/Divider',
+    '@material-ui/core/Drawer',
+    '@material-ui/core/Fab',
+    '@material-ui/core/Fade',
+    '@material-ui/core/FilledInput',
+    '@material-ui/core/FormLabel',
+    '@material-ui/core/FormControl',
+    '@material-ui/core/FormControlLabel',
+    '@material-ui/core/FormHelperText',
+    '@material-ui/core/FormGroup',
+    '@material-ui/core/Grid',
+    '@material-ui/core/Grow',
+    '@material-ui/core/Icon',
+    '@material-ui/core/IconButton',
+    '@material-ui/core/Input',
+    '@material-ui/core/InputBase',
+    '@material-ui/core/InputLabel',
+    '@material-ui/core/InputAdornment',
+    '@material-ui/core/Link',
+    '@material-ui/core/LinearProgress',
+    '@material-ui/core/List',
+    '@material-ui/core/ListItem',
+    '@material-ui/core/ListItemAvatar',
+    '@material-ui/core/ListItemSecondaryAction',
+    '@material-ui/core/ListItemIcon',
+    '@material-ui/core/ListSubheader',
+    '@material-ui/core/ListItemText',
+    '@material-ui/core/Menu',
+    '@material-ui/core/MenuItem',
+    '@material-ui/core/MenuList',
+    '@material-ui/core/Modal',
+    '@material-ui/core/NativeSelect',
+    '@material-ui/core/OutlinedInput',
+    '@material-ui/core/Pagination',
+    '@material-ui/core/PaginationItem',
+    '@material-ui/core/Paper',
+    '@material-ui/core/Popover',
+    '@material-ui/core/Popper',
+    '@material-ui/core/Portal',
+    '@material-ui/core/Radio',
+    '@material-ui/core/RadioGroup',
+    '@material-ui/core/Rating',
+    '@material-ui/core/ScopedCssBaseline',
+    '@material-ui/core/Select',
+    '@material-ui/core/Skeleton',
+    '@material-ui/core/Slider',
+    '@material-ui/core/Snackbar',
+    '@material-ui/core/SnackbarContent',
+    '@material-ui/core/SpeedDial',
+    '@material-ui/core/SpeedDialAction',
+    '@material-ui/core/SpeedDialIcon',
+    '@material-ui/core/Stack',
+    '@material-ui/core/Step',
+    '@material-ui/core/StepButton',
+    '@material-ui/core/StepConnector',
+    '@material-ui/core/StepLabel',
+    '@material-ui/core/StepIcon',
+    '@material-ui/core/Stepper',
+    '@material-ui/core/SvgIcon',
+    '@material-ui/core/Switch',
+    '@material-ui/core/Tab',
+    '@material-ui/core/Table',
+    '@material-ui/core/TableBody',
+    '@material-ui/core/TableCell',
+    '@material-ui/core/TableContainer',
+    '@material-ui/core/TableFooter',
+    '@material-ui/core/TableHead',
+    '@material-ui/core/TablePagination',
+    '@material-ui/core/TableRow',
+    '@material-ui/core/TableSortLabel',
+    '@material-ui/core/Tabs',
+    '@material-ui/core/TextField',
+    '@material-ui/core/TextareaAutosize',
+    '@material-ui/core/ToggleButton',
+    '@material-ui/core/ToggleButtonGroup',
+    '@material-ui/core/Toolbar',
+    '@material-ui/core/Tooltip',
+    '@material-ui/core/Typography',
+    '@mui/material/Accordion',
+    '@mui/material/AccordionActions',
+    '@mui/material/AccordionDetails',
+    '@mui/material/Alert',
+    '@mui/material/AlertTitle',
+    '@mui/material/Autocomplete',
+    '@mui/material/Avatar',
+    '@mui/material/AvatarGroup',
+    '@mui/material/Backdrop',
+    '@mui/material/Badge',
+    '@mui/material/Box',
+    '@mui/material/Breadcrumbs',
+    '@mui/material/Button',
+    '@mui/material/ButtonGroup',
+    '@mui/material/Card',
+    '@mui/material/CardActions',
+    '@mui/material/CardActionArea',
+    '@mui/material/CardContent',
+    '@mui/material/CardHeader',
+    '@mui/material/CardMedia',
+    '@mui/material/CircularProgress',
+    '@mui/material/Collapse',
+    '@mui/material/ClickAwayListener',
+    '@mui/material/Chip',
+    '@mui/material/Checkbox',
+    '@mui/material/Container',
+    '@mui/material/Dialog',
+    '@mui/material/DialogActions',
+    '@mui/material/DialogTitle',
+    '@mui/material/DialogContent',
+    '@mui/material/DialogContentText',
+    '@mui/material/Divider',
+    '@mui/material/Drawer',
+    '@mui/material/Fab',
+    '@mui/material/Fade',
+    '@mui/material/FilledInput',
+    '@mui/material/FormLabel',
+    '@mui/material/FormControl',
+    '@mui/material/FormControlLabel',
+    '@mui/material/FormHelperText',
+    '@mui/material/FormGroup',
+    '@mui/material/Grid',
+    '@mui/material/Grow',
+    '@mui/material/Icon',
+    '@mui/material/IconButton',
+    '@mui/material/Input',
+    '@mui/material/InputBase',
+    '@mui/material/InputLabel',
+    '@mui/material/InputAdornment',
+    '@mui/material/Link',
+    '@mui/material/LinearProgress',
+    '@mui/material/List',
+    '@mui/material/ListItem',
+    '@mui/material/ListItemAvatar',
+    '@mui/material/ListItemSecondaryAction',
+    '@mui/material/ListItemIcon',
+    '@mui/material/ListSubheader',
+    '@mui/material/ListItemText',
+    '@mui/material/Menu',
+    '@mui/material/MenuItem',
+    '@mui/material/MenuList',
+    '@mui/material/Modal',
+    '@mui/material/NativeSelect',
+    '@mui/material/OutlinedInput',
+    '@mui/material/Pagination',
+    '@mui/material/PaginationItem',
+    '@mui/material/Paper',
+    '@mui/material/Popover',
+    '@mui/material/Popper',
+    '@mui/material/Portal',
+    '@mui/material/Radio',
+    '@mui/material/RadioGroup',
+    '@mui/material/Rating',
+    '@mui/material/ScopedCssBaseline',
+    '@mui/material/Select',
+    '@mui/material/Skeleton',
+    '@mui/material/Slider',
+    '@mui/material/Snackbar',
+    '@mui/material/SnackbarContent',
+    '@mui/material/SpeedDial',
+    '@mui/material/SpeedDialAction',
+    '@mui/material/SpeedDialIcon',
+    '@mui/material/Stack',
+    '@mui/material/Step',
+    '@mui/material/StepButton',
+    '@mui/material/StepConnector',
+    '@mui/material/StepLabel',
+    '@mui/material/StepIcon',
+    '@mui/material/Stepper',
+    '@mui/material/SvgIcon',
+    '@mui/material/Switch',
+    '@mui/material/Tab',
+    '@mui/material/Table',
+    '@mui/material/TableBody',
+    '@mui/material/TableCell',
+    '@mui/material/TableContainer',
+    '@mui/material/TableFooter',
+    '@mui/material/TableHead',
+    '@mui/material/TablePagination',
+    '@mui/material/TableRow',
+    '@mui/material/TableSortLabel',
+    '@mui/material/Tabs',
+    '@mui/material/TextField',
+    '@mui/material/TextareaAutosize',
+    '@mui/material/ToggleButton',
+    '@mui/material/ToggleButtonGroup',
+    '@mui/material/Toolbar',
+    '@mui/material/Tooltip',
+    '@mui/material/Typography',
+    '@material-ui/lab/ToggleButton',
+    '@material-ui/lab/ToggleButtonGroup',
+    '@material-ui/lab/Autocomplete',
+    '@material-ui/lab/Alert',
+    '@material-ui/lab',
+    '@jbrowse/core/Plugin',
+    '@jbrowse/core/pluggableElementTypes',
+    '@jbrowse/core/pluggableElementTypes/ViewType',
+    '@jbrowse/core/pluggableElementTypes/AdapterType',
+    '@jbrowse/core/pluggableElementTypes/DisplayType',
+    '@jbrowse/core/pluggableElementTypes/TrackType',
+    '@jbrowse/core/pluggableElementTypes/WidgetType',
+    '@jbrowse/core/pluggableElementTypes/models',
+    '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType',
+    '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType',
+    '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType',
+    '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType',
+    '@jbrowse/core/pluggableElementTypes/renderers/RendererType',
+    '@jbrowse/core/configuration',
+    '@jbrowse/core/util/types/mst',
+    '@jbrowse/core/ui',
+    '@jbrowse/core/util',
+    '@jbrowse/core/util/color',
+    '@jbrowse/core/util/layouts',
+    '@jbrowse/core/util/tracks',
+    '@jbrowse/core/util/Base1DViewModel',
+    '@jbrowse/core/util/io',
+    '@jbrowse/core/util/mst-reflection',
+    '@jbrowse/core/util/rxjs',
+    '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail',
+    '@jbrowse/core/data_adapters/BaseAdapter',
+];

package/ReExports/material-ui-colors.js

@@ -1,18 +1,17 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-
-var _colors = require("@mui/material/colors");
-
-Object.keys(_colors).forEach(function (key) {
-  if (key === "default" || key === "__esModule") return;
-  if (key in exports && exports[key] === _colors[key]) return;
-  Object.defineProperty(exports, key, {
-    enumerable: true,
-    get: function get() {
-      return _colors[key];
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
     }
-  });
-});
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("@mui/material/colors"), exports);

package/ReExports/modules.d.ts

@@ -86,30 +86,22 @@ declare const libs: {
         readonly maxOffset: number;
         readonly minOffset: number;
         readonly totalBp: number;
+    } & {
+        readonly dynamicBlocks: import("../util/blockTypes").BlockSet;
+        readonly staticBlocks: import("../util/blockTypes").BlockSet;
+        readonly currBp: number;
+    } & {
         pxToBp(px: number): {
-            oob: boolean;
-            coord: number;
-            offset: number;
-            index: number;
-            refName: string;
-            start: number;
-            end: number;
-            reversed: boolean;
-            assemblyName: string;
-        } | {
             coord: number;
             index: number;
-            start: number;
             refName: string;
             oob: boolean;
             assemblyName: string;
             offset: number;
+            start: number;
+            end: number;
             reversed: boolean;
         };
-    } & {
-        readonly dynamicBlocks: import("../util/blockTypes").BlockSet;
-        readonly staticBlocks: import("../util/blockTypes").BlockSet;
-        readonly currBp: number;
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
@@ -117,15 +109,15 @@ declare const libs: {
         }): number | undefined;
     } & {
         setFeatures(features: coreUtil.Feature[]): void;
-        zoomToDisplayedRegions(leftPx: import("../util/Base1DViewModel").BpOffset | undefined, rightPx: import("../util/Base1DViewModel").BpOffset | undefined): void;
         showAllRegions(): void;
-        moveTo(start: import("../util/Base1DViewModel").BpOffset, end: import("../util/Base1DViewModel").BpOffset): void;
         zoomOut(): void;
         zoomIn(): void;
-        zoomTo(newBpPerPx: number, offset?: number): void;
+        zoomTo(newBpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
-        centerAt(coord: number, refName: string, regionNumber: number): void;
+        centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
+    } & {
+        moveTo(start?: import("../util/Base1DUtils").BpOffset | undefined, end?: import("../util/Base1DUtils").BpOffset | undefined): void;
     }, mst._NotCustomized, mst._NotCustomized>;
     '@jbrowse/core/util/io': typeof coreIo;
     '@jbrowse/core/util/mst-reflection': typeof coreMstReflection;
@@ -142,7 +134,6 @@ declare const libs: {
     'react-dom': typeof ReactDom;
     'mobx-react': typeof mxreact;
     '@mui/x-data-grid': {
-        DataGrid: any;
         useGridApiContext: typeof useGridApiContext;
         useGridApiRef: <Api extends import("@mui/x-data-grid").GridApiCommon = import("@mui/x-data-grid/models/api/gridApiCommunity").GridApiCommunity>() => React.MutableRefObject<Api>;
         useGridRootProps: () => import("@mui/x-data-grid/models/props/DataGridProps").DataGridProcessedProps<any>;