@jbrowse/core 2.0.0 → 2.1.2

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Files changed (184) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +9 -3
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -581
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -478
  4. package/BaseFeatureWidget/index.js +88 -126
  5. package/BaseFeatureWidget/types.d.ts +1 -0
  6. package/BaseFeatureWidget/types.js +1 -4
  7. package/BaseFeatureWidget/util.js +40 -75
  8. package/CorePlugin.js +55 -94
  9. package/Plugin.js +9 -34
  10. package/PluginLoader.js +153 -422
  11. package/PluginManager.d.ts +28 -33
  12. package/PluginManager.js +377 -666
  13. package/ReExports/Attributes.js +3 -10
  14. package/ReExports/BaseCard.js +3 -10
  15. package/ReExports/DataGrid.js +5 -12
  16. package/ReExports/FeatureDetails.js +3 -10
  17. package/ReExports/index.js +6 -12
  18. package/ReExports/list.d.ts +5 -0
  19. package/ReExports/list.js +271 -7
  20. package/ReExports/material-ui-colors.js +15 -16
  21. package/ReExports/modules.d.ts +11 -20
  22. package/ReExports/modules.js +453 -798
  23. package/TextSearch/BaseResults.js +51 -123
  24. package/TextSearch/TextSearchManager.js +66 -144
  25. package/assemblyManager/assembly.js +280 -555
  26. package/assemblyManager/assemblyConfigSchema.js +47 -64
  27. package/assemblyManager/assemblyManager.js +126 -272
  28. package/assemblyManager/index.js +9 -22
  29. package/configuration/configurationSchema.js +167 -203
  30. package/configuration/configurationSlot.js +248 -326
  31. package/configuration/index.js +19 -35
  32. package/configuration/util.js +131 -173
  33. package/data_adapters/BaseAdapter.d.ts +2 -2
  34. package/data_adapters/BaseAdapter.js +132 -521
  35. package/data_adapters/CytobandAdapter.js +40 -126
  36. package/data_adapters/dataAdapterCache.js +77 -158
  37. package/package.json +4 -5
  38. package/pluggableElementTypes/AdapterType.js +24 -79
  39. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  40. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  41. package/pluggableElementTypes/ConnectionType.js +22 -65
  42. package/pluggableElementTypes/DisplayType.js +35 -82
  43. package/pluggableElementTypes/InternetAccountType.js +23 -64
  44. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  45. package/pluggableElementTypes/RpcMethodType.js +85 -427
  46. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  47. package/pluggableElementTypes/TrackType.js +26 -70
  48. package/pluggableElementTypes/ViewType.js +21 -63
  49. package/pluggableElementTypes/WidgetType.js +21 -64
  50. package/pluggableElementTypes/index.d.ts +4 -3
  51. package/pluggableElementTypes/index.js +42 -125
  52. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  53. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  54. package/pluggableElementTypes/models/BaseTrackModel.js +139 -199
  55. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  56. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  57. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  58. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  59. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  60. package/pluggableElementTypes/models/index.js +21 -70
  61. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  62. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  63. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  64. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  65. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -255
  66. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  67. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  68. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  69. package/pluggableElementTypes/renderers/index.js +19 -62
  70. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  71. package/rpc/BaseRpcDriver.js +169 -405
  72. package/rpc/MainThreadRpcDriver.js +27 -150
  73. package/rpc/RpcManager.js +58 -159
  74. package/rpc/WebWorkerRpcDriver.js +54 -171
  75. package/rpc/configSchema.js +25 -49
  76. package/rpc/coreRpcMethods.d.ts +1 -3
  77. package/rpc/coreRpcMethods.js +221 -959
  78. package/rpc/remoteAbortSignals.js +46 -70
  79. package/tsconfig.build.tsbuildinfo +1 -1
  80. package/ui/AboutDialog.js +106 -162
  81. package/ui/App.js +157 -242
  82. package/ui/AssemblySelector.js +59 -120
  83. package/ui/CascadingMenu.js +101 -196
  84. package/ui/ColorPicker.d.ts +16 -0
  85. package/ui/ColorPicker.js +97 -0
  86. package/ui/Drawer.js +28 -61
  87. package/ui/DrawerWidget.js +108 -202
  88. package/ui/DropDownMenu.js +60 -91
  89. package/ui/EditableTypography.js +87 -149
  90. package/ui/ErrorMessage.js +41 -56
  91. package/ui/FactoryResetDialog.js +24 -57
  92. package/ui/FatalErrorDialog.js +59 -91
  93. package/ui/FileSelector/FileSelector.js +123 -189
  94. package/ui/FileSelector/LocalFileChooser.js +44 -75
  95. package/ui/FileSelector/UrlChooser.js +17 -38
  96. package/ui/FileSelector/index.js +6 -12
  97. package/ui/Icons.js +45 -69
  98. package/ui/Logo.js +57 -110
  99. package/ui/Menu.js +232 -354
  100. package/ui/PrerenderedCanvas.js +63 -87
  101. package/ui/ResizeHandle.js +87 -116
  102. package/ui/ReturnToImportFormDialog.js +32 -63
  103. package/ui/SanitizedHTML.js +64 -47
  104. package/ui/Snackbar.js +74 -101
  105. package/ui/SnackbarModel.js +37 -51
  106. package/ui/Tooltip.js +49 -76
  107. package/ui/ViewContainer.js +113 -196
  108. package/ui/colors.d.ts +10 -0
  109. package/ui/colors.js +78 -0
  110. package/ui/index.js +51 -181
  111. package/ui/react-colorful.d.ts +17 -0
  112. package/ui/react-colorful.js +455 -0
  113. package/ui/theme.d.ts +23 -1
  114. package/ui/theme.js +199 -247
  115. package/util/Base1DUtils.d.ts +32 -0
  116. package/util/Base1DUtils.js +174 -0
  117. package/util/Base1DViewModel.d.ts +16 -30
  118. package/util/Base1DViewModel.js +116 -293
  119. package/util/QuickLRU.js +84 -332
  120. package/util/TimeTraveller.d.ts +19 -0
  121. package/util/TimeTraveller.js +86 -0
  122. package/util/aborting.js +49 -127
  123. package/util/analytics.js +91 -154
  124. package/util/blockTypes.js +106 -240
  125. package/util/calculateDynamicBlocks.js +98 -128
  126. package/util/calculateStaticBlocks.js +105 -125
  127. package/util/color/cssColorsLevel4.js +156 -160
  128. package/util/color/index.js +33 -55
  129. package/util/compositeMap.js +49 -333
  130. package/util/formatFastaStrings.js +9 -14
  131. package/util/idMaker.js +18 -31
  132. package/util/index.d.ts +18 -32
  133. package/util/index.js +747 -1226
  134. package/util/io/RemoteFileWithRangeCache.js +88 -257
  135. package/util/io/index.js +95 -169
  136. package/util/jexl.js +60 -115
  137. package/util/jexlStrings.js +24 -29
  138. package/util/layouts/BaseLayout.js +1 -4
  139. package/util/layouts/GranularRectLayout.js +388 -555
  140. package/util/layouts/MultiLayout.js +41 -109
  141. package/util/layouts/PrecomputedLayout.js +56 -112
  142. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  143. package/util/layouts/SceneGraph.js +127 -197
  144. package/util/layouts/index.js +29 -66
  145. package/util/mst-reflection.js +55 -71
  146. package/util/offscreenCanvasPonyfill.js +66 -134
  147. package/util/offscreenCanvasUtils.d.ts +2 -7
  148. package/util/offscreenCanvasUtils.js +49 -146
  149. package/util/range.js +29 -40
  150. package/util/rxjs.js +20 -27
  151. package/util/simpleFeature.js +88 -152
  152. package/util/stats.js +91 -151
  153. package/util/tracks.js +130 -173
  154. package/util/types/index.js +110 -179
  155. package/util/types/mst.js +91 -146
  156. package/util/types/util.js +1 -4
  157. package/util/when.js +54 -101
  158. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  159. package/BaseFeatureWidget/index.test.js +0 -69
  160. package/TextSearch/BaseResults.test.js +0 -42
  161. package/configuration/configurationSchema.test.js +0 -266
  162. package/configuration/configurationSlot.test.js +0 -69
  163. package/configuration/util.test.js +0 -39
  164. package/data_adapters/BaseAdapter.test.js +0 -200
  165. package/declare.d.js +0 -1
  166. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  167. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  168. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  169. package/rpc/BaseRpcDriver.test.js +0 -540
  170. package/rpc/declaration.d.js +0 -1
  171. package/ui/FatalErrorDialog.test.js +0 -82
  172. package/ui/SanitizedHTML.test.js +0 -36
  173. package/ui/theme.test.js +0 -92
  174. package/util/Base1DViewModel.test.js +0 -130
  175. package/util/calculateDynamicBlocks.test.js +0 -74
  176. package/util/calculateStaticBlocks.test.js +0 -297
  177. package/util/declare.d.js +0 -1
  178. package/util/formatFastaStrings.test.js +0 -40
  179. package/util/index.test.js +0 -213
  180. package/util/jexlStrings.test.js +0 -48
  181. package/util/layouts/GranularRectLayout.test.js +0 -99
  182. package/util/range.test.js +0 -64
  183. package/util/simpleFeature.test.js +0 -34
  184. package/util/stats.test.js +0 -172
@@ -1,76 +1,65 @@
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  "use strict";
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-
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- var _typeof = require("@babel/runtime/helpers/typeof");
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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  });
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- exports.default = ServerSideRenderedContent;
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-
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- var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/objectWithoutProperties"));
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-
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- var _react = _interopRequireWildcard(require("react"));
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-
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- var _styles = require("@mui/material/styles");
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-
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- var _reactDom = require("react-dom");
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-
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- var _ui = require("../../ui");
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-
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- var _util = require("../../util");
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-
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- var _excluded = ["theme", "html", "RenderingComponent"];
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-
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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-
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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-
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ const react_1 = __importStar(require("react"));
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+ const styles_1 = require("@mui/material/styles");
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+ const react_dom_1 = require("react-dom");
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+ const ui_1 = require("../../ui");
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+ const util_1 = require("../../util");
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  function ServerSideRenderedContent(props) {
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- var ssrContainerNode = (0, _react.useRef)(null);
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- var theme = props.theme,
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- html = props.html,
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- RenderingComponent = props.RenderingComponent,
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- rest = (0, _objectWithoutProperties2.default)(props, _excluded);
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- var jbrowseTheme = (0, _ui.createJBrowseTheme)(theme);
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- (0, _react.useEffect)(function () {
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- var domNode = ssrContainerNode.current;
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-
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- function doHydrate() {
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- if (domNode) {
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- if (domNode) {
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- (0, _reactDom.unmountComponentAtNode)(domNode);
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+ const ssrContainerNode = (0, react_1.useRef)(null);
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+ const { theme, html, RenderingComponent, ...rest } = props;
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+ const jbrowseTheme = (0, ui_1.createJBrowseTheme)(theme);
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+ (0, react_1.useEffect)(() => {
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+ const domNode = ssrContainerNode.current;
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+ function doHydrate() {
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+ if (domNode) {
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+ if (domNode) {
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+ (0, react_dom_1.unmountComponentAtNode)(domNode);
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+ }
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+ domNode.innerHTML = html;
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+ // defer main-thread rendering and hydration for when
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+ // we have some free time. helps keep the framerate up.
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+ //
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+ // note: the timeout param to rIC below helps when you are doing
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+ // a long continuous scroll, it forces it to evaluate because
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+ // otherwise the continuous scroll would never give it time to do
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+ // so
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+ (0, util_1.rIC)(() => {
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+ (0, react_dom_1.hydrate)(react_1.default.createElement(styles_1.ThemeProvider, { theme: jbrowseTheme },
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+ react_1.default.createElement(RenderingComponent, { ...rest })), domNode);
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+ }, { timeout: 300 });
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+ }
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  }
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-
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- domNode.innerHTML = html; // defer main-thread rendering and hydration for when
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- // we have some free time. helps keep the framerate up.
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- //
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- // note: the timeout param to rIC below helps when you are doing
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- // a long continuous scroll, it forces it to evaluate because
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- // otherwise the continuous scroll would never give it time to do
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- // so
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-
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- (0, _util.rIC)(function () {
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- (0, _reactDom.hydrate)( /*#__PURE__*/_react.default.createElement(_styles.ThemeProvider, {
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- theme: jbrowseTheme
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- }, /*#__PURE__*/_react.default.createElement(RenderingComponent, rest)), domNode);
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- }, {
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- timeout: 300
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- });
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- }
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- }
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-
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- doHydrate();
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- return function () {
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- if (domNode) {
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- (0, _reactDom.unmountComponentAtNode)(domNode);
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- }
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- };
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- }, [html, jbrowseTheme, rest, RenderingComponent]);
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- return /*#__PURE__*/_react.default.createElement("div", {
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- ref: ssrContainerNode,
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- "data-html-size": html.length,
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- className: "ssr-container"
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- });
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- }
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+ doHydrate();
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+ return () => {
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+ if (domNode) {
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+ (0, react_dom_1.unmountComponentAtNode)(domNode);
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+ }
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+ };
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+ }, [html, jbrowseTheme, rest, RenderingComponent]);
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+ return (react_1.default.createElement("div", { ref: ssrContainerNode, "data-html-size": html.length, className: "ssr-container" }));
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+ }
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+ exports.default = ServerSideRenderedContent;
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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- var _typeof = require("@babel/runtime/helpers/typeof");
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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- var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
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-
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- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
65
-
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
25
+ var __importDefault = (this && this.__importDefault) || function (mod) {
26
+ return (mod && mod.__esModule) ? mod : { "default": mod };
27
+ };
28
+ Object.defineProperty(exports, "__esModule", { value: true });
29
+ const react_1 = __importDefault(require("react"));
30
+ const styles_1 = require("@mui/material/styles");
31
+ const canvas_sequencer_1 = require("canvas-sequencer");
32
+ const server_1 = require("react-dom/server");
33
+ const mobx_state_tree_1 = require("mobx-state-tree");
34
+ const util_1 = require("../../util");
35
+ const RendererType_1 = __importDefault(require("./RendererType"));
36
+ const serializableFilterChain_1 = __importDefault(require("./util/serializableFilterChain"));
37
+ const ui_1 = require("../../ui");
38
+ const ServerSideRenderedContent_1 = __importDefault(require("./ServerSideRenderedContent"));
66
39
  function isSvgExport(elt) {
67
- return 'canvasRecordedData' in elt;
40
+ return 'canvasRecordedData' in elt;
68
41
  }
69
-
70
- var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
71
- (0, _inherits2.default)(ServerSideRenderer, _RendererType);
72
-
73
- var _super = _createSuper(ServerSideRenderer);
74
-
75
- function ServerSideRenderer() {
76
- (0, _classCallCheck2.default)(this, ServerSideRenderer);
77
- return _super.apply(this, arguments);
78
- }
79
-
80
- (0, _createClass2.default)(ServerSideRenderer, [{
81
- key: "serializeArgsInClient",
82
- value:
42
+ class ServerSideRenderer extends RendererType_1.default {
83
43
  /**
84
44
  * directly modifies the render arguments to prepare them to be serialized and
85
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  * sent to the worker.
@@ -87,11 +47,14 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
87
47
  * @param args - the arguments passed to render
88
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  * @returns the same object
89
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  */
90
- function serializeArgsInClient(args) {
91
- return _objectSpread(_objectSpread({}, args), {}, {
92
- config: (0, _mobxStateTree.isStateTreeNode)(args.config) ? (0, _mobxStateTree.getSnapshot)(args.config) : args.config,
93
- filters: args.filters && args.filters.toJSON().filters
94
- });
50
+ serializeArgsInClient(args) {
51
+ return {
52
+ ...args,
53
+ config: (0, mobx_state_tree_1.isStateTreeNode)(args.config)
54
+ ? (0, mobx_state_tree_1.getSnapshot)(args.config)
55
+ : args.config,
56
+ filters: args.filters && args.filters.toJSON().filters,
57
+ };
95
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  }
96
59
  /**
97
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  * Deserialize the render results from the worker in the client. Includes
@@ -101,28 +64,25 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
101
64
  * @param results - the results of the render
102
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  * @param args - the arguments passed to render
103
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  */
104
-
105
- }, {
106
- key: "deserializeResultsInClient",
107
- value: function deserializeResultsInClient(results, args) {
108
- var html = results.html,
109
- rest = (0, _objectWithoutProperties2.default)(results, _excluded); // if we are rendering svg, we skip hydration
110
-
111
- if (args.exportSVG) {
112
- // only return the results if the renderer explicitly has
113
- // this.supportsSVG support to avoid garbage being rendered in SVG
114
- // document
115
- return _objectSpread(_objectSpread({}, results), {}, {
116
- html: this.supportsSVG ? results.html : '<text y="12" fill="black">SVG export not supported for this track</text>'
117
- });
118
- } // hydrate results using ServerSideRenderedContent
119
-
120
-
121
- return _objectSpread(_objectSpread({}, rest), {}, {
122
- reactElement: /*#__PURE__*/_react.default.createElement(_ServerSideRenderedContent.default, (0, _extends2.default)({}, args, results, {
123
- RenderingComponent: this.ReactComponent
124
- }))
125
- });
67
+ deserializeResultsInClient(results, args) {
68
+ const { html, ...rest } = results;
69
+ // if we are rendering svg, we skip hydration
70
+ if (args.exportSVG) {
71
+ // only return the results if the renderer explicitly has
72
+ // this.supportsSVG support to avoid garbage being rendered in SVG
73
+ // document
74
+ return {
75
+ ...results,
76
+ html: this.supportsSVG
77
+ ? results.html
78
+ : '<text y="12" fill="black">SVG export not supported for this track</text>',
79
+ };
80
+ }
81
+ // hydrate results using ServerSideRenderedContent
82
+ return {
83
+ ...rest,
84
+ reactElement: (react_1.default.createElement(ServerSideRenderedContent_1.default, { ...args, ...results, RenderingComponent: this.ReactComponent })),
85
+ };
126
86
  }
127
87
  /**
128
88
  * modifies the passed arguments object to inflate arguments as necessary.
@@ -130,19 +90,15 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
130
90
  *
131
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  * @param args - the converted arguments to modify
132
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  */
133
-
134
- }, {
135
- key: "deserializeArgsInWorker",
136
- value: function deserializeArgsInWorker(args) {
137
- var deserialized = _objectSpread({}, args);
138
-
139
- deserialized.config = this.configSchema.create(args.config || {}, {
140
- pluginManager: this.pluginManager
141
- });
142
- deserialized.filters = new _serializableFilterChain.default({
143
- filters: args.filters
144
- });
145
- return deserialized;
93
+ deserializeArgsInWorker(args) {
94
+ const deserialized = { ...args };
95
+ deserialized.config = this.configSchema.create(args.config || {}, {
96
+ pluginManager: this.pluginManager,
97
+ });
98
+ deserialized.filters = new serializableFilterChain_1.default({
99
+ filters: args.filters,
100
+ });
101
+ return deserialized;
146
102
  }
147
103
  /**
148
104
  * Serialize results of the render to send them to the client. Includes
@@ -152,17 +108,10 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
152
108
  * method
153
109
  * @param args - deserialized render args
154
110
  */
155
-
156
- }, {
157
- key: "serializeResultsInWorker",
158
- value: function serializeResultsInWorker(results, args) {
159
- var html = (0, _server.renderToString)( /*#__PURE__*/_react.default.createElement(_styles.ThemeProvider, {
160
- theme: (0, _ui.createJBrowseTheme)(args.theme)
161
- }, results.reactElement));
162
- delete results.reactElement;
163
- return _objectSpread(_objectSpread({}, results), {}, {
164
- html: html
165
- });
111
+ serializeResultsInWorker(results, args) {
112
+ const html = (0, server_1.renderToString)(react_1.default.createElement(styles_1.ThemeProvider, { theme: (0, ui_1.createJBrowseTheme)(args.theme) }, results.reactElement));
113
+ delete results.reactElement;
114
+ return { ...results, html };
166
115
  }
167
116
  /**
168
117
  * Render method called on the client. Serializes args, then calls
@@ -171,145 +120,43 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
171
120
  * @param rpcManager - RPC mananger
172
121
  * @param args - render args
173
122
  */
174
-
175
- }, {
176
- key: "renderInClient",
177
- value: function () {
178
- var _renderInClient = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(rpcManager, args) {
179
- var results, width, height, canvasRecordedData, C2S, ctx, seq, str;
180
- return _regenerator.default.wrap(function _callee$(_context) {
181
- while (1) {
182
- switch (_context.prev = _context.next) {
183
- case 0:
184
- _context.next = 2;
185
- return rpcManager.call(args.sessionId, 'CoreRender', args);
186
-
187
- case 2:
188
- results = _context.sent;
189
-
190
- if (!isSvgExport(results)) {
191
- _context.next = 14;
192
- break;
193
- }
194
-
195
- width = results.width, height = results.height, canvasRecordedData = results.canvasRecordedData;
196
- _context.next = 7;
197
- return Promise.resolve().then(function () {
198
- return _interopRequireWildcard(require('canvas2svg'));
199
- });
200
-
201
- case 7:
202
- C2S = _context.sent;
203
- ctx = new C2S.default(width, height);
204
- seq = new _canvasSequencer.CanvasSequence(canvasRecordedData);
205
- seq.execute(ctx);
206
- str = ctx.getSvg(); // innerHTML strips the outer <svg> element from returned data, we add
207
- // our own <svg> element in the view's SVG export
208
-
209
- results.html = str.innerHTML;
210
- delete results.reactElement;
211
-
212
- case 14:
213
- return _context.abrupt("return", results);
214
-
215
- case 15:
216
- case "end":
217
- return _context.stop();
218
- }
219
- }
220
- }, _callee);
221
- }));
222
-
223
- function renderInClient(_x, _x2) {
224
- return _renderInClient.apply(this, arguments);
225
- }
226
-
227
- return renderInClient;
228
- }()
123
+ async renderInClient(rpcManager, args) {
124
+ const results = (await rpcManager.call(args.sessionId, 'CoreRender', args));
125
+ if (isSvgExport(results)) {
126
+ const { width, height, canvasRecordedData } = results;
127
+ const C2S = await Promise.resolve().then(() => __importStar(require('canvas2svg')));
128
+ const ctx = new C2S.default(width, height);
129
+ const seq = new canvas_sequencer_1.CanvasSequence(canvasRecordedData);
130
+ seq.execute(ctx);
131
+ const str = ctx.getSvg();
132
+ // innerHTML strips the outer <svg> element from returned data, we add
133
+ // our own <svg> element in the view's SVG export
134
+ results.html = str.innerHTML;
135
+ delete results.reactElement;
136
+ }
137
+ return results;
138
+ }
229
139
  /**
230
140
  * Render method called on the worker. `render` is called here in server-side
231
141
  * rendering
232
142
  *
233
143
  * @param args - serialized render args
234
144
  */
235
-
236
- }, {
237
- key: "renderInWorker",
238
- value: function () {
239
- var _renderInWorker = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(args) {
240
- var _this = this;
241
-
242
- var signal, _args$statusCallback, statusCallback, deserializedArgs, results;
243
-
244
- return _regenerator.default.wrap(function _callee2$(_context2) {
245
- while (1) {
246
- switch (_context2.prev = _context2.next) {
247
- case 0:
248
- signal = args.signal, _args$statusCallback = args.statusCallback, statusCallback = _args$statusCallback === void 0 ? function () {} : _args$statusCallback;
249
- deserializedArgs = this.deserializeArgsInWorker(args);
250
- _context2.next = 4;
251
- return (0, _util.updateStatus)('Rendering plot', statusCallback, function () {
252
- return _this.render(deserializedArgs);
253
- });
254
-
255
- case 4:
256
- results = _context2.sent;
257
- (0, _util.checkAbortSignal)(signal); // serialize the results for passing back to the main thread.
258
- // these will be transmitted to the main process, and will come out
259
- // as the result of renderRegionWithWorker.
260
-
261
- return _context2.abrupt("return", (0, _util.updateStatus)('Serializing results', statusCallback, function () {
262
- return _this.serializeResultsInWorker(results, deserializedArgs);
263
- }));
264
-
265
- case 7:
266
- case "end":
267
- return _context2.stop();
268
- }
269
- }
270
- }, _callee2, this);
271
- }));
272
-
273
- function renderInWorker(_x3) {
274
- return _renderInWorker.apply(this, arguments);
275
- }
276
-
277
- return renderInWorker;
278
- }()
279
- }, {
280
- key: "freeResourcesInClient",
281
- value: function () {
282
- var _freeResourcesInClient = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(rpcManager, args) {
283
- var serializedArgs, freed, freedRpc;
284
- return _regenerator.default.wrap(function _callee3$(_context3) {
285
- while (1) {
286
- switch (_context3.prev = _context3.next) {
287
- case 0:
288
- serializedArgs = this.serializeArgsInClient(args);
289
- freed = this.freeResources();
290
- _context3.next = 4;
291
- return rpcManager.call(args.sessionId, 'CoreFreeResources', serializedArgs);
292
-
293
- case 4:
294
- freedRpc = _context3.sent;
295
- return _context3.abrupt("return", freed + freedRpc);
296
-
297
- case 6:
298
- case "end":
299
- return _context3.stop();
300
- }
301
- }
302
- }, _callee3, this);
303
- }));
304
-
305
- function freeResourcesInClient(_x4, _x5) {
306
- return _freeResourcesInClient.apply(this, arguments);
307
- }
308
-
309
- return freeResourcesInClient;
310
- }()
311
- }]);
312
- return ServerSideRenderer;
313
- }(_RendererType2.default);
314
-
315
- exports.default = ServerSideRenderer;
145
+ async renderInWorker(args) {
146
+ const { signal, statusCallback = () => { } } = args;
147
+ const deserializedArgs = this.deserializeArgsInWorker(args);
148
+ const results = await (0, util_1.updateStatus)('Rendering plot', statusCallback, () => this.render(deserializedArgs));
149
+ (0, util_1.checkAbortSignal)(signal);
150
+ // serialize the results for passing back to the main thread.
151
+ // these will be transmitted to the main process, and will come out
152
+ // as the result of renderRegionWithWorker.
153
+ return (0, util_1.updateStatus)('Serializing results', statusCallback, () => this.serializeResultsInWorker(results, deserializedArgs));
154
+ }
155
+ async freeResourcesInClient(rpcManager, args) {
156
+ const serializedArgs = this.serializeArgsInClient(args);
157
+ const freed = this.freeResources();
158
+ const freedRpc = (await rpcManager.call(args.sessionId, 'CoreFreeResources', serializedArgs));
159
+ return freed + freedRpc;
160
+ }
161
+ }
162
+ exports.default = ServerSideRenderer;
@@ -1,63 +1,20 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- Object.defineProperty(exports, "BoxRendererType", {
9
- enumerable: true,
10
- get: function get() {
11
- return _BoxRendererType.default;
12
- }
13
- });
14
- Object.defineProperty(exports, "CircularChordRendererType", {
15
- enumerable: true,
16
- get: function get() {
17
- return _CircularChordRendererType.default;
18
- }
19
- });
20
- Object.defineProperty(exports, "ComparativeServerSideRendererType", {
21
- enumerable: true,
22
- get: function get() {
23
- return _ComparativeServerSideRendererType.default;
24
- }
25
- });
26
- Object.defineProperty(exports, "FeatureRendererType", {
27
- enumerable: true,
28
- get: function get() {
29
- return _FeatureRendererType.default;
30
- }
31
- });
32
- Object.defineProperty(exports, "RendererType", {
33
- enumerable: true,
34
- get: function get() {
35
- return _RendererType.default;
36
- }
37
- });
38
- Object.defineProperty(exports, "ServerSideRenderedContent", {
39
- enumerable: true,
40
- get: function get() {
41
- return _ServerSideRenderedContent.default;
42
- }
43
- });
44
- Object.defineProperty(exports, "ServerSideRendererType", {
45
- enumerable: true,
46
- get: function get() {
47
- return _ServerSideRendererType.default;
48
- }
49
- });
50
-
51
- var _BoxRendererType = _interopRequireDefault(require("./BoxRendererType"));
52
-
53
- var _CircularChordRendererType = _interopRequireDefault(require("./CircularChordRendererType"));
54
-
55
- var _ComparativeServerSideRendererType = _interopRequireDefault(require("./ComparativeServerSideRendererType"));
56
-
57
- var _FeatureRendererType = _interopRequireDefault(require("./FeatureRendererType"));
58
-
59
- var _RendererType = _interopRequireDefault(require("./RendererType"));
60
-
61
- var _ServerSideRenderedContent = _interopRequireDefault(require("./ServerSideRenderedContent"));
62
-
63
- var _ServerSideRendererType = _interopRequireDefault(require("./ServerSideRendererType"));
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.ServerSideRendererType = exports.ServerSideRenderedContent = exports.RendererType = exports.FeatureRendererType = exports.ComparativeServerSideRendererType = exports.CircularChordRendererType = exports.BoxRendererType = void 0;
7
+ const BoxRendererType_1 = __importDefault(require("./BoxRendererType"));
8
+ exports.BoxRendererType = BoxRendererType_1.default;
9
+ const CircularChordRendererType_1 = __importDefault(require("./CircularChordRendererType"));
10
+ exports.CircularChordRendererType = CircularChordRendererType_1.default;
11
+ const ComparativeServerSideRendererType_1 = __importDefault(require("./ComparativeServerSideRendererType"));
12
+ exports.ComparativeServerSideRendererType = ComparativeServerSideRendererType_1.default;
13
+ const FeatureRendererType_1 = __importDefault(require("./FeatureRendererType"));
14
+ exports.FeatureRendererType = FeatureRendererType_1.default;
15
+ const RendererType_1 = __importDefault(require("./RendererType"));
16
+ exports.RendererType = RendererType_1.default;
17
+ const ServerSideRenderedContent_1 = __importDefault(require("./ServerSideRenderedContent"));
18
+ exports.ServerSideRenderedContent = ServerSideRenderedContent_1.default;
19
+ const ServerSideRendererType_1 = __importDefault(require("./ServerSideRendererType"));
20
+ exports.ServerSideRendererType = ServerSideRendererType_1.default;