@jbrowse/core 2.0.0 → 2.1.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (184) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +9 -3
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -581
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -478
  4. package/BaseFeatureWidget/index.js +88 -126
  5. package/BaseFeatureWidget/types.d.ts +1 -0
  6. package/BaseFeatureWidget/types.js +1 -4
  7. package/BaseFeatureWidget/util.js +40 -75
  8. package/CorePlugin.js +55 -94
  9. package/Plugin.js +9 -34
  10. package/PluginLoader.js +153 -422
  11. package/PluginManager.d.ts +28 -33
  12. package/PluginManager.js +377 -666
  13. package/ReExports/Attributes.js +3 -10
  14. package/ReExports/BaseCard.js +3 -10
  15. package/ReExports/DataGrid.js +5 -12
  16. package/ReExports/FeatureDetails.js +3 -10
  17. package/ReExports/index.js +6 -12
  18. package/ReExports/list.d.ts +5 -0
  19. package/ReExports/list.js +271 -7
  20. package/ReExports/material-ui-colors.js +15 -16
  21. package/ReExports/modules.d.ts +11 -20
  22. package/ReExports/modules.js +453 -798
  23. package/TextSearch/BaseResults.js +51 -123
  24. package/TextSearch/TextSearchManager.js +66 -144
  25. package/assemblyManager/assembly.js +280 -555
  26. package/assemblyManager/assemblyConfigSchema.js +47 -64
  27. package/assemblyManager/assemblyManager.js +126 -272
  28. package/assemblyManager/index.js +9 -22
  29. package/configuration/configurationSchema.js +167 -203
  30. package/configuration/configurationSlot.js +248 -326
  31. package/configuration/index.js +19 -35
  32. package/configuration/util.js +131 -173
  33. package/data_adapters/BaseAdapter.d.ts +2 -2
  34. package/data_adapters/BaseAdapter.js +132 -521
  35. package/data_adapters/CytobandAdapter.js +40 -126
  36. package/data_adapters/dataAdapterCache.js +77 -158
  37. package/package.json +4 -5
  38. package/pluggableElementTypes/AdapterType.js +24 -79
  39. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  40. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  41. package/pluggableElementTypes/ConnectionType.js +22 -65
  42. package/pluggableElementTypes/DisplayType.js +35 -82
  43. package/pluggableElementTypes/InternetAccountType.js +23 -64
  44. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  45. package/pluggableElementTypes/RpcMethodType.js +85 -427
  46. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  47. package/pluggableElementTypes/TrackType.js +26 -70
  48. package/pluggableElementTypes/ViewType.js +21 -63
  49. package/pluggableElementTypes/WidgetType.js +21 -64
  50. package/pluggableElementTypes/index.d.ts +4 -3
  51. package/pluggableElementTypes/index.js +42 -125
  52. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  53. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  54. package/pluggableElementTypes/models/BaseTrackModel.js +139 -199
  55. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  56. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  57. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  58. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  59. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  60. package/pluggableElementTypes/models/index.js +21 -70
  61. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  62. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  63. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  64. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  65. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -255
  66. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  67. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  68. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  69. package/pluggableElementTypes/renderers/index.js +19 -62
  70. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  71. package/rpc/BaseRpcDriver.js +169 -405
  72. package/rpc/MainThreadRpcDriver.js +27 -150
  73. package/rpc/RpcManager.js +58 -159
  74. package/rpc/WebWorkerRpcDriver.js +54 -171
  75. package/rpc/configSchema.js +25 -49
  76. package/rpc/coreRpcMethods.d.ts +1 -3
  77. package/rpc/coreRpcMethods.js +221 -959
  78. package/rpc/remoteAbortSignals.js +46 -70
  79. package/tsconfig.build.tsbuildinfo +1 -1
  80. package/ui/AboutDialog.js +106 -162
  81. package/ui/App.js +157 -242
  82. package/ui/AssemblySelector.js +59 -120
  83. package/ui/CascadingMenu.js +101 -196
  84. package/ui/ColorPicker.d.ts +16 -0
  85. package/ui/ColorPicker.js +97 -0
  86. package/ui/Drawer.js +28 -61
  87. package/ui/DrawerWidget.js +108 -202
  88. package/ui/DropDownMenu.js +60 -91
  89. package/ui/EditableTypography.js +87 -149
  90. package/ui/ErrorMessage.js +41 -56
  91. package/ui/FactoryResetDialog.js +24 -57
  92. package/ui/FatalErrorDialog.js +59 -91
  93. package/ui/FileSelector/FileSelector.js +123 -189
  94. package/ui/FileSelector/LocalFileChooser.js +44 -75
  95. package/ui/FileSelector/UrlChooser.js +17 -38
  96. package/ui/FileSelector/index.js +6 -12
  97. package/ui/Icons.js +45 -69
  98. package/ui/Logo.js +57 -110
  99. package/ui/Menu.js +232 -354
  100. package/ui/PrerenderedCanvas.js +63 -87
  101. package/ui/ResizeHandle.js +87 -116
  102. package/ui/ReturnToImportFormDialog.js +32 -63
  103. package/ui/SanitizedHTML.js +64 -47
  104. package/ui/Snackbar.js +74 -101
  105. package/ui/SnackbarModel.js +37 -51
  106. package/ui/Tooltip.js +49 -76
  107. package/ui/ViewContainer.js +113 -196
  108. package/ui/colors.d.ts +10 -0
  109. package/ui/colors.js +78 -0
  110. package/ui/index.js +51 -181
  111. package/ui/react-colorful.d.ts +17 -0
  112. package/ui/react-colorful.js +455 -0
  113. package/ui/theme.d.ts +23 -1
  114. package/ui/theme.js +199 -247
  115. package/util/Base1DUtils.d.ts +32 -0
  116. package/util/Base1DUtils.js +174 -0
  117. package/util/Base1DViewModel.d.ts +16 -30
  118. package/util/Base1DViewModel.js +116 -293
  119. package/util/QuickLRU.js +84 -332
  120. package/util/TimeTraveller.d.ts +19 -0
  121. package/util/TimeTraveller.js +86 -0
  122. package/util/aborting.js +49 -127
  123. package/util/analytics.js +91 -154
  124. package/util/blockTypes.js +106 -240
  125. package/util/calculateDynamicBlocks.js +98 -128
  126. package/util/calculateStaticBlocks.js +105 -125
  127. package/util/color/cssColorsLevel4.js +156 -160
  128. package/util/color/index.js +33 -55
  129. package/util/compositeMap.js +49 -333
  130. package/util/formatFastaStrings.js +9 -14
  131. package/util/idMaker.js +18 -31
  132. package/util/index.d.ts +18 -32
  133. package/util/index.js +747 -1226
  134. package/util/io/RemoteFileWithRangeCache.js +88 -257
  135. package/util/io/index.js +95 -169
  136. package/util/jexl.js +60 -115
  137. package/util/jexlStrings.js +24 -29
  138. package/util/layouts/BaseLayout.js +1 -4
  139. package/util/layouts/GranularRectLayout.js +388 -555
  140. package/util/layouts/MultiLayout.js +41 -109
  141. package/util/layouts/PrecomputedLayout.js +56 -112
  142. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  143. package/util/layouts/SceneGraph.js +127 -197
  144. package/util/layouts/index.js +29 -66
  145. package/util/mst-reflection.js +55 -71
  146. package/util/offscreenCanvasPonyfill.js +66 -134
  147. package/util/offscreenCanvasUtils.d.ts +2 -7
  148. package/util/offscreenCanvasUtils.js +49 -146
  149. package/util/range.js +29 -40
  150. package/util/rxjs.js +20 -27
  151. package/util/simpleFeature.js +88 -152
  152. package/util/stats.js +91 -151
  153. package/util/tracks.js +130 -173
  154. package/util/types/index.js +110 -179
  155. package/util/types/mst.js +91 -146
  156. package/util/types/util.js +1 -4
  157. package/util/when.js +54 -101
  158. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  159. package/BaseFeatureWidget/index.test.js +0 -69
  160. package/TextSearch/BaseResults.test.js +0 -42
  161. package/configuration/configurationSchema.test.js +0 -266
  162. package/configuration/configurationSlot.test.js +0 -69
  163. package/configuration/util.test.js +0 -39
  164. package/data_adapters/BaseAdapter.test.js +0 -200
  165. package/declare.d.js +0 -1
  166. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  167. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  168. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  169. package/rpc/BaseRpcDriver.test.js +0 -540
  170. package/rpc/declaration.d.js +0 -1
  171. package/ui/FatalErrorDialog.test.js +0 -82
  172. package/ui/SanitizedHTML.test.js +0 -36
  173. package/ui/theme.test.js +0 -92
  174. package/util/Base1DViewModel.test.js +0 -130
  175. package/util/calculateDynamicBlocks.test.js +0 -74
  176. package/util/calculateStaticBlocks.test.js +0 -297
  177. package/util/declare.d.js +0 -1
  178. package/util/formatFastaStrings.test.js +0 -40
  179. package/util/index.test.js +0 -213
  180. package/util/jexlStrings.test.js +0 -48
  181. package/util/layouts/GranularRectLayout.test.js +0 -99
  182. package/util/range.test.js +0 -64
  183. package/util/simpleFeature.test.js +0 -34
  184. package/util/stats.test.js +0 -172
@@ -1,95 +1,71 @@
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  "use strict";
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-
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- var _typeof = require("@babel/runtime/helpers/typeof");
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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  });
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- exports.default = void 0;
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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-
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- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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-
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- var _propTypes = _interopRequireDefault(require("prop-types"));
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-
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- var _react = _interopRequireWildcard(require("react"));
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-
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- var _offscreenCanvasPonyfill = require("../util/offscreenCanvasPonyfill");
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-
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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-
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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-
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-
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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-
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ var __importDefault = (this && this.__importDefault) || function (mod) {
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+ return (mod && mod.__esModule) ? mod : { "default": mod };
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ /* eslint-disable @typescript-eslint/no-explicit-any */
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+ const prop_types_1 = __importDefault(require("prop-types"));
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+ const react_1 = __importStar(require("react"));
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+ const offscreenCanvasPonyfill_1 = require("../util/offscreenCanvasPonyfill");
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  function PrerenderedCanvas(props) {
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- var width = props.width,
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- height = props.height,
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- highResolutionScaling = props.highResolutionScaling,
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- style = props.style,
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- imageData = props.imageData,
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- blockKey = props.blockKey,
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- showSoftClip = props.showSoftClip;
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-
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- var _useState = (0, _react.useState)(false),
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- _useState2 = (0, _slicedToArray2.default)(_useState, 2),
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- done = _useState2[0],
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- setDone = _useState2[1];
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-
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- var featureCanvas = (0, _react.useRef)(null);
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- (0, _react.useEffect)(function () {
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- if (!imageData) {
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- return;
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- }
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-
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- var canvas = featureCanvas.current;
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-
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- if (!canvas) {
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- return;
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- }
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-
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- var context = canvas.getContext('2d');
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-
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- if (!context) {
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- return;
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- }
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-
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- (0, _offscreenCanvasPonyfill.drawImageOntoCanvasContext)(imageData, context);
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- setDone(true);
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- }, [imageData]);
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- var softClipString = showSoftClip ? '_softclipped' : '';
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- var blockKeyStr = blockKey ? '_' + blockKey : '';
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- var testId = "prerendered_canvas".concat(softClipString).concat(blockKeyStr).concat(done ? '_done' : '');
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- return /*#__PURE__*/_react.default.createElement("canvas", {
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- "data-testid": testId,
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- ref: featureCanvas,
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- width: width * highResolutionScaling,
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- height: height * highResolutionScaling,
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- style: _objectSpread({
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- width: width,
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- height: height
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- }, style)
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- });
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+ const { width, height, highResolutionScaling, style, imageData, blockKey, showSoftClip, } = props;
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+ const [done, setDone] = (0, react_1.useState)(false);
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+ const featureCanvas = (0, react_1.useRef)(null);
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+ (0, react_1.useEffect)(() => {
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+ if (!imageData) {
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+ return;
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+ }
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+ const canvas = featureCanvas.current;
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+ if (!canvas) {
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+ return;
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+ }
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+ const context = canvas.getContext('2d');
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+ if (!context) {
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+ return;
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+ }
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+ (0, offscreenCanvasPonyfill_1.drawImageOntoCanvasContext)(imageData, context);
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+ setDone(true);
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+ }, [imageData]);
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+ const softClipString = showSoftClip ? '_softclipped' : '';
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+ const blockKeyStr = blockKey ? '_' + blockKey : '';
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+ const testId = `prerendered_canvas${softClipString}${blockKeyStr}${done ? '_done' : ''}`;
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+ return (react_1.default.createElement("canvas", { "data-testid": testId, ref: featureCanvas, width: width * highResolutionScaling, height: height * highResolutionScaling, style: { width, height, ...style } }));
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  }
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- width: _propTypes.default.number.isRequired,
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- highResolutionScaling: _propTypes.default.number,
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- style: _propTypes.default.objectOf(_propTypes.default.any),
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- imageData: _propTypes.default.any // config: ReactPropTypes.objectOf(ReactPropTypes.any),
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+ height: prop_types_1.default.number.isRequired,
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+ width: prop_types_1.default.number.isRequired,
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+ highResolutionScaling: prop_types_1.default.number,
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+ style: prop_types_1.default.objectOf(prop_types_1.default.any),
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+ imageData: prop_types_1.default.any,
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+ // config: ReactPropTypes.objectOf(ReactPropTypes.any),
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  };
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- highResolutionScaling: 1,
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- style: {} // config: {},
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+ highResolutionScaling: 1,
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+ style: {},
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+ // config: {},
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  };
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+ exports.default = PrerenderedCanvas;
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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- var _react = _interopRequireWildcard(require("react"));
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- var _mui = require("tss-react/mui");
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- var _excluded = ["onDrag", "vertical", "flexbox", "className"];
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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-
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- var useStyles = (0, _mui.makeStyles)()({
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- horizontalHandle: {
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- cursor: 'row-resize',
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- width: '100%'
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- },
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- verticalHandle: {
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- cursor: 'col-resize',
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- height: '100%'
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- },
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- flexbox_verticalHandle: {
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- cursor: 'col-resize',
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- alignSelf: 'stretch' // the height: 100% is actually unable to function inside flexbox
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-
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- },
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- flexbox_horizontalHandle: {
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- cursor: 'row-resize',
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- alignSelf: 'stretch' // similar to above
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-
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- }
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
26
+ const react_1 = __importStar(require("react"));
27
+ const mui_1 = require("tss-react/mui");
28
+ const useStyles = (0, mui_1.makeStyles)()({
29
+ horizontalHandle: {
30
+ cursor: 'row-resize',
31
+ width: '100%',
32
+ },
33
+ verticalHandle: {
34
+ cursor: 'col-resize',
35
+ height: '100%',
36
+ },
37
+ flexbox_verticalHandle: {
38
+ cursor: 'col-resize',
39
+ alignSelf: 'stretch', // the height: 100% is actually unable to function inside flexbox
40
+ },
41
+ flexbox_horizontalHandle: {
42
+ cursor: 'row-resize',
43
+ alignSelf: 'stretch', // similar to above
44
+ },
47
45
  });
48
-
49
- function ResizeHandle(_ref) {
50
- var onDrag = _ref.onDrag,
51
- _ref$vertical = _ref.vertical,
52
- vertical = _ref$vertical === void 0 ? false : _ref$vertical,
53
- _ref$flexbox = _ref.flexbox,
54
- flexbox = _ref$flexbox === void 0 ? false : _ref$flexbox,
55
- originalClassName = _ref.className,
56
- props = (0, _objectWithoutProperties2.default)(_ref, _excluded);
57
-
58
- var _useState = (0, _react.useState)(false),
59
- _useState2 = (0, _slicedToArray2.default)(_useState, 2),
60
- mouseDragging = _useState2[0],
61
- setMouseDragging = _useState2[1];
62
-
63
- var prevPos = (0, _react.useRef)(0);
64
-
65
- var _useStyles = useStyles(),
66
- classes = _useStyles.classes,
67
- cx = _useStyles.cx;
68
-
69
- (0, _react.useEffect)(function () {
70
- function mouseMove(event) {
71
- event.preventDefault();
72
- var pos = vertical ? event.clientX : event.clientY;
73
- var distance = pos - prevPos.current;
74
-
75
- if (distance) {
76
- onDrag(distance);
77
- prevPos.current = pos;
78
- }
79
- }
80
-
81
- function mouseUp() {
82
- setMouseDragging(false);
46
+ function ResizeHandle({ onDrag, vertical = false, flexbox = false, className: originalClassName, ...props }) {
47
+ const [mouseDragging, setMouseDragging] = (0, react_1.useState)(false);
48
+ const prevPos = (0, react_1.useRef)(0);
49
+ const { classes, cx } = useStyles();
50
+ (0, react_1.useEffect)(() => {
51
+ function mouseMove(event) {
52
+ event.preventDefault();
53
+ const pos = vertical ? event.clientX : event.clientY;
54
+ const distance = pos - prevPos.current;
55
+ if (distance) {
56
+ onDrag(distance);
57
+ prevPos.current = pos;
58
+ }
59
+ }
60
+ function mouseUp() {
61
+ setMouseDragging(false);
62
+ }
63
+ if (mouseDragging) {
64
+ window.addEventListener('mousemove', mouseMove, true);
65
+ window.addEventListener('mouseup', mouseUp, true);
66
+ return () => {
67
+ window.removeEventListener('mousemove', mouseMove, true);
68
+ window.removeEventListener('mouseup', mouseUp, true);
69
+ };
70
+ }
71
+ return () => { };
72
+ }, [mouseDragging, onDrag, vertical]);
73
+ let className;
74
+ if (flexbox) {
75
+ if (vertical) {
76
+ className = classes.flexbox_verticalHandle;
77
+ }
78
+ else {
79
+ className = classes.flexbox_horizontalHandle;
80
+ }
83
81
  }
84
-
85
- if (mouseDragging) {
86
- window.addEventListener('mousemove', mouseMove, true);
87
- window.addEventListener('mouseup', mouseUp, true);
88
- return function () {
89
- window.removeEventListener('mousemove', mouseMove, true);
90
- window.removeEventListener('mouseup', mouseUp, true);
91
- };
82
+ else if (vertical) {
83
+ className = classes.verticalHandle;
92
84
  }
93
-
94
- return function () {};
95
- }, [mouseDragging, onDrag, vertical]);
96
- var className;
97
-
98
- if (flexbox) {
99
- if (vertical) {
100
- className = classes.flexbox_verticalHandle;
101
- } else {
102
- className = classes.flexbox_horizontalHandle;
85
+ else {
86
+ className = classes.horizontalHandle;
103
87
  }
104
- } else if (vertical) {
105
- className = classes.verticalHandle;
106
- } else {
107
- className = classes.horizontalHandle;
108
- }
109
-
110
- return /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
111
- "data-resizer": "true",
112
- onMouseDown: function onMouseDown(event) {
113
- event.preventDefault();
114
- prevPos.current = vertical ? event.clientX : event.clientY;
115
- setMouseDragging(true);
116
- },
117
- role: "presentation",
118
- className: cx(className, originalClassName)
119
- }, props));
88
+ return (react_1.default.createElement("div", { "data-resizer": "true", onMouseDown: event => {
89
+ event.preventDefault();
90
+ prevPos.current = vertical ? event.clientX : event.clientY;
91
+ setMouseDragging(true);
92
+ }, role: "presentation", className: cx(className, originalClassName), ...props }));
120
93
  }
121
-
122
- var _default = ResizeHandle;
123
- exports.default = _default;
94
+ exports.default = ResizeHandle;
@@ -1,67 +1,36 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.default = void 0;
9
-
10
- var _react = _interopRequireDefault(require("react"));
11
-
12
- var _mobxReact = require("mobx-react");
13
-
14
- var _material = require("@mui/material");
15
-
16
- var _mui = require("tss-react/mui");
17
-
18
- var _Close = _interopRequireDefault(require("@mui/icons-material/Close"));
19
-
20
- var useStyles = (0, _mui.makeStyles)()(function (theme) {
21
- return {
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const react_1 = __importDefault(require("react"));
7
+ const mobx_react_1 = require("mobx-react");
8
+ const material_1 = require("@mui/material");
9
+ const mui_1 = require("tss-react/mui");
10
+ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
11
+ const useStyles = (0, mui_1.makeStyles)()(theme => ({
22
12
  closeButton: {
23
- position: 'absolute',
24
- right: theme.spacing(1),
25
- top: theme.spacing(1),
26
- color: theme.palette.grey[500]
27
- }
28
- };
29
- });
30
-
31
- function ReturnToImportFormDialog(_ref) {
32
- var model = _ref.model,
33
- handleClose = _ref.handleClose;
34
-
35
- var _useStyles = useStyles(),
36
- classes = _useStyles.classes;
37
-
38
- return /*#__PURE__*/_react.default.createElement(_material.Dialog, {
39
- maxWidth: "xl",
40
- open: true,
41
- onClose: handleClose
42
- }, /*#__PURE__*/_react.default.createElement(_material.DialogTitle, null, "Reference sequence", handleClose ? /*#__PURE__*/_react.default.createElement(_material.IconButton, {
43
- className: classes.closeButton,
44
- onClick: function onClick() {
45
- return handleClose();
13
+ position: 'absolute',
14
+ right: theme.spacing(1),
15
+ top: theme.spacing(1),
16
+ color: theme.palette.grey[500],
46
17
  },
47
- size: "large"
48
- }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_material.Divider, null), /*#__PURE__*/_react.default.createElement(_material.DialogContent, null, /*#__PURE__*/_react.default.createElement(_material.Typography, null, "Are you sure you want to return to the import form? This will lose your current view")), /*#__PURE__*/_react.default.createElement(_material.DialogActions, null, /*#__PURE__*/_react.default.createElement(_material.Button, {
49
- onClick: function onClick() {
50
- model.clearView();
51
- handleClose();
52
- },
53
- variant: "contained",
54
- color: "primary",
55
- autoFocus: true
56
- }, "OK"), /*#__PURE__*/_react.default.createElement(_material.Button, {
57
- onClick: function onClick() {
58
- return handleClose();
59
- },
60
- color: "secondary",
61
- variant: "contained"
62
- }, "Cancel")));
18
+ }));
19
+ function ReturnToImportFormDialog({ model, handleClose, }) {
20
+ const { classes } = useStyles();
21
+ return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
22
+ react_1.default.createElement(material_1.DialogTitle, null,
23
+ "Reference sequence",
24
+ handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
25
+ react_1.default.createElement(Close_1.default, null))) : null),
26
+ react_1.default.createElement(material_1.Divider, null),
27
+ react_1.default.createElement(material_1.DialogContent, null,
28
+ react_1.default.createElement(material_1.Typography, null, "Are you sure you want to return to the import form? This will lose your current view")),
29
+ react_1.default.createElement(material_1.DialogActions, null,
30
+ react_1.default.createElement(material_1.Button, { onClick: () => {
31
+ model.clearView();
32
+ handleClose();
33
+ }, variant: "contained", color: "primary", autoFocus: true }, "OK"),
34
+ react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "secondary", variant: "contained" }, "Cancel"))));
63
35
  }
64
-
65
- var _default = (0, _mobxReact.observer)(ReturnToImportFormDialog);
66
-
67
- exports.default = _default;
36
+ exports.default = (0, mobx_react_1.observer)(ReturnToImportFormDialog);
@@ -1,57 +1,74 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.default = SanitizedHTML;
9
- exports.isHTML = isHTML;
10
-
11
- var _react = _interopRequireDefault(require("react"));
12
-
13
- var _escapeHtml = _interopRequireDefault(require("escape-html"));
14
-
15
- var _dompurify = _interopRequireDefault(require("dompurify"));
16
-
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.isHTML = void 0;
7
+ const react_1 = __importDefault(require("react"));
8
+ const escape_html_1 = __importDefault(require("escape-html"));
9
+ const dompurify_1 = __importDefault(require("dompurify"));
17
10
  // source https://github.com/sindresorhus/html-tags/blob/master/html-tags.json
18
11
  // with some random uncommon ones removed. note: we just use this to run the content
19
12
  // through dompurify without escaping if we see an htmlTag from this list
20
13
  // otherwise we escape angle brackets and things prematurely because it might be
21
14
  // something like <TRA> in VCF. Ref #657
22
- var htmlTags = ['a', 'b', 'br', 'code', 'div', 'em', 'h1', 'h2', 'h3', 'h4', 'h5', 'h6', 'i', 'img', 'li', 'p', 'pre', 'span', 'small', 'strong', 'table', 'tbody', 'td', 'tfoot', 'th', 'thead', 'tr', 'u', 'ul'];
23
- var added = false; // adapted from is-html
15
+ const htmlTags = [
16
+ 'a',
17
+ 'b',
18
+ 'br',
19
+ 'code',
20
+ 'div',
21
+ 'em',
22
+ 'h1',
23
+ 'h2',
24
+ 'h3',
25
+ 'h4',
26
+ 'h5',
27
+ 'h6',
28
+ 'i',
29
+ 'img',
30
+ 'li',
31
+ 'p',
32
+ 'pre',
33
+ 'span',
34
+ 'small',
35
+ 'strong',
36
+ 'table',
37
+ 'tbody',
38
+ 'td',
39
+ 'tfoot',
40
+ 'th',
41
+ 'thead',
42
+ 'tr',
43
+ 'u',
44
+ 'ul',
45
+ ];
46
+ let added = false;
47
+ // adapted from is-html
24
48
  // https://github.com/sindresorhus/is-html/blob/master/index.js
25
-
26
- var full = new RegExp(htmlTags.map(function (tag) {
27
- return "<".concat(tag, "\\b[^>]*>");
28
- }).join('|'), 'i');
29
-
49
+ const full = new RegExp(htmlTags.map(tag => `<${tag}\\b[^>]*>`).join('|'), 'i');
30
50
  function isHTML(str) {
31
- return full.test(str);
51
+ return full.test(str);
32
52
  }
33
-
34
- function SanitizedHTML(_ref) {
35
- var html = _ref.html;
36
- var value = isHTML(html) ? html : (0, _escapeHtml.default)(html);
37
-
38
- if (!added) {
39
- added = true; // see https://github.com/cure53/DOMPurify/issues/317
40
- // only have to add this once, and can't do it globally because dompurify
41
- // not yet initialized at global scope
42
-
43
- _dompurify.default.addHook('afterSanitizeAttributes', function (node) {
44
- if (node.tagName === 'A') {
45
- node.setAttribute('rel', 'noopener noreferrer');
46
- node.setAttribute('target', '_blank');
47
- }
48
- });
49
- }
50
-
51
- return /*#__PURE__*/_react.default.createElement("div", {
52
- // eslint-disable-next-line react/no-danger
53
- dangerouslySetInnerHTML: {
54
- __html: _dompurify.default.sanitize(value)
53
+ exports.isHTML = isHTML;
54
+ function SanitizedHTML({ html }) {
55
+ const value = isHTML(html) ? html : (0, escape_html_1.default)(html);
56
+ if (!added) {
57
+ added = true;
58
+ // see https://github.com/cure53/DOMPurify/issues/317
59
+ // only have to add this once, and can't do it globally because dompurify
60
+ // not yet initialized at global scope
61
+ dompurify_1.default.addHook('afterSanitizeAttributes', (node) => {
62
+ if (node.tagName === 'A') {
63
+ node.setAttribute('rel', 'noopener noreferrer');
64
+ node.setAttribute('target', '_blank');
65
+ }
66
+ });
55
67
  }
56
- });
57
- }
68
+ return (react_1.default.createElement("div", {
69
+ // eslint-disable-next-line react/no-danger
70
+ dangerouslySetInnerHTML: {
71
+ __html: dompurify_1.default.sanitize(value),
72
+ } }));
73
+ }
74
+ exports.default = SanitizedHTML;