@jbrowse/core 2.0.0 → 2.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/BaseFeatureWidget/BaseFeatureDetail.d.ts +9 -3
- package/BaseFeatureWidget/BaseFeatureDetail.js +313 -581
- package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -478
- package/BaseFeatureWidget/index.js +88 -126
- package/BaseFeatureWidget/types.d.ts +1 -0
- package/BaseFeatureWidget/types.js +1 -4
- package/BaseFeatureWidget/util.js +40 -75
- package/CorePlugin.js +55 -94
- package/Plugin.js +9 -34
- package/PluginLoader.js +153 -422
- package/PluginManager.d.ts +28 -33
- package/PluginManager.js +377 -666
- package/ReExports/Attributes.js +3 -10
- package/ReExports/BaseCard.js +3 -10
- package/ReExports/DataGrid.js +5 -12
- package/ReExports/FeatureDetails.js +3 -10
- package/ReExports/index.js +6 -12
- package/ReExports/list.d.ts +5 -0
- package/ReExports/list.js +271 -7
- package/ReExports/material-ui-colors.js +15 -16
- package/ReExports/modules.d.ts +11 -20
- package/ReExports/modules.js +453 -798
- package/TextSearch/BaseResults.js +51 -123
- package/TextSearch/TextSearchManager.js +66 -144
- package/assemblyManager/assembly.js +280 -555
- package/assemblyManager/assemblyConfigSchema.js +47 -64
- package/assemblyManager/assemblyManager.js +126 -272
- package/assemblyManager/index.js +9 -22
- package/configuration/configurationSchema.js +167 -203
- package/configuration/configurationSlot.js +248 -326
- package/configuration/index.js +19 -35
- package/configuration/util.js +131 -173
- package/data_adapters/BaseAdapter.d.ts +2 -2
- package/data_adapters/BaseAdapter.js +132 -521
- package/data_adapters/CytobandAdapter.js +40 -126
- package/data_adapters/dataAdapterCache.js +77 -158
- package/package.json +4 -5
- package/pluggableElementTypes/AdapterType.js +24 -79
- package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
- package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
- package/pluggableElementTypes/ConnectionType.js +22 -65
- package/pluggableElementTypes/DisplayType.js +35 -82
- package/pluggableElementTypes/InternetAccountType.js +23 -64
- package/pluggableElementTypes/PluggableElementBase.js +8 -20
- package/pluggableElementTypes/RpcMethodType.js +85 -427
- package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
- package/pluggableElementTypes/TrackType.js +26 -70
- package/pluggableElementTypes/ViewType.js +21 -63
- package/pluggableElementTypes/WidgetType.js +21 -64
- package/pluggableElementTypes/index.d.ts +4 -3
- package/pluggableElementTypes/index.js +42 -125
- package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
- package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
- package/pluggableElementTypes/models/BaseTrackModel.js +139 -199
- package/pluggableElementTypes/models/BaseViewModel.js +24 -40
- package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
- package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
- package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
- package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
- package/pluggableElementTypes/models/index.js +21 -70
- package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
- package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
- package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
- package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
- package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -255
- package/pluggableElementTypes/renderers/RendererType.js +31 -105
- package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
- package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
- package/pluggableElementTypes/renderers/index.js +19 -62
- package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
- package/rpc/BaseRpcDriver.js +169 -405
- package/rpc/MainThreadRpcDriver.js +27 -150
- package/rpc/RpcManager.js +58 -159
- package/rpc/WebWorkerRpcDriver.js +54 -171
- package/rpc/configSchema.js +25 -49
- package/rpc/coreRpcMethods.d.ts +1 -3
- package/rpc/coreRpcMethods.js +221 -959
- package/rpc/remoteAbortSignals.js +46 -70
- package/tsconfig.build.tsbuildinfo +1 -1
- package/ui/AboutDialog.js +106 -162
- package/ui/App.js +157 -242
- package/ui/AssemblySelector.js +59 -120
- package/ui/CascadingMenu.js +101 -196
- package/ui/ColorPicker.d.ts +16 -0
- package/ui/ColorPicker.js +97 -0
- package/ui/Drawer.js +28 -61
- package/ui/DrawerWidget.js +108 -202
- package/ui/DropDownMenu.js +60 -91
- package/ui/EditableTypography.js +87 -149
- package/ui/ErrorMessage.js +41 -56
- package/ui/FactoryResetDialog.js +24 -57
- package/ui/FatalErrorDialog.js +59 -91
- package/ui/FileSelector/FileSelector.js +123 -189
- package/ui/FileSelector/LocalFileChooser.js +44 -75
- package/ui/FileSelector/UrlChooser.js +17 -38
- package/ui/FileSelector/index.js +6 -12
- package/ui/Icons.js +45 -69
- package/ui/Logo.js +57 -110
- package/ui/Menu.js +232 -354
- package/ui/PrerenderedCanvas.js +63 -87
- package/ui/ResizeHandle.js +87 -116
- package/ui/ReturnToImportFormDialog.js +32 -63
- package/ui/SanitizedHTML.js +64 -47
- package/ui/Snackbar.js +74 -101
- package/ui/SnackbarModel.js +37 -51
- package/ui/Tooltip.js +49 -76
- package/ui/ViewContainer.js +113 -196
- package/ui/colors.d.ts +10 -0
- package/ui/colors.js +78 -0
- package/ui/index.js +51 -181
- package/ui/react-colorful.d.ts +17 -0
- package/ui/react-colorful.js +455 -0
- package/ui/theme.d.ts +23 -1
- package/ui/theme.js +199 -247
- package/util/Base1DUtils.d.ts +32 -0
- package/util/Base1DUtils.js +174 -0
- package/util/Base1DViewModel.d.ts +16 -30
- package/util/Base1DViewModel.js +116 -293
- package/util/QuickLRU.js +84 -332
- package/util/TimeTraveller.d.ts +19 -0
- package/util/TimeTraveller.js +86 -0
- package/util/aborting.js +49 -127
- package/util/analytics.js +91 -154
- package/util/blockTypes.js +106 -240
- package/util/calculateDynamicBlocks.js +98 -128
- package/util/calculateStaticBlocks.js +105 -125
- package/util/color/cssColorsLevel4.js +156 -160
- package/util/color/index.js +33 -55
- package/util/compositeMap.js +49 -333
- package/util/formatFastaStrings.js +9 -14
- package/util/idMaker.js +18 -31
- package/util/index.d.ts +18 -32
- package/util/index.js +747 -1226
- package/util/io/RemoteFileWithRangeCache.js +88 -257
- package/util/io/index.js +95 -169
- package/util/jexl.js +60 -115
- package/util/jexlStrings.js +24 -29
- package/util/layouts/BaseLayout.js +1 -4
- package/util/layouts/GranularRectLayout.js +388 -555
- package/util/layouts/MultiLayout.js +41 -109
- package/util/layouts/PrecomputedLayout.js +56 -112
- package/util/layouts/PrecomputedMultiLayout.js +22 -59
- package/util/layouts/SceneGraph.js +127 -197
- package/util/layouts/index.js +29 -66
- package/util/mst-reflection.js +55 -71
- package/util/offscreenCanvasPonyfill.js +66 -134
- package/util/offscreenCanvasUtils.d.ts +2 -7
- package/util/offscreenCanvasUtils.js +49 -146
- package/util/range.js +29 -40
- package/util/rxjs.js +20 -27
- package/util/simpleFeature.js +88 -152
- package/util/stats.js +91 -151
- package/util/tracks.js +130 -173
- package/util/types/index.js +110 -179
- package/util/types/mst.js +91 -146
- package/util/types/util.js +1 -4
- package/util/when.js +54 -101
- package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
- package/BaseFeatureWidget/index.test.js +0 -69
- package/TextSearch/BaseResults.test.js +0 -42
- package/configuration/configurationSchema.test.js +0 -266
- package/configuration/configurationSlot.test.js +0 -69
- package/configuration/util.test.js +0 -39
- package/data_adapters/BaseAdapter.test.js +0 -200
- package/declare.d.js +0 -1
- package/pluggableElementTypes/RpcMethodType.test.js +0 -118
- package/pluggableElementTypes/renderers/declare.d.js +0 -1
- package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
- package/rpc/BaseRpcDriver.test.js +0 -540
- package/rpc/declaration.d.js +0 -1
- package/ui/FatalErrorDialog.test.js +0 -82
- package/ui/SanitizedHTML.test.js +0 -36
- package/ui/theme.test.js +0 -92
- package/util/Base1DViewModel.test.js +0 -130
- package/util/calculateDynamicBlocks.test.js +0 -74
- package/util/calculateStaticBlocks.test.js +0 -297
- package/util/declare.d.js +0 -1
- package/util/formatFastaStrings.test.js +0 -40
- package/util/index.test.js +0 -213
- package/util/jexlStrings.test.js +0 -48
- package/util/layouts/GranularRectLayout.test.js +0 -99
- package/util/range.test.js +0 -64
- package/util/simpleFeature.test.js +0 -34
- package/util/stats.test.js +0 -172
package/ui/PrerenderedCanvas.js
CHANGED
|
@@ -1,95 +1,71 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
2
|
+
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
+
if (k2 === undefined) k2 = k;
|
|
4
|
+
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
+
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
6
|
+
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
+
}
|
|
8
|
+
Object.defineProperty(o, k2, desc);
|
|
9
|
+
}) : (function(o, m, k, k2) {
|
|
10
|
+
if (k2 === undefined) k2 = k;
|
|
11
|
+
o[k2] = m[k];
|
|
12
|
+
}));
|
|
13
|
+
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
|
|
14
|
+
Object.defineProperty(o, "default", { enumerable: true, value: v });
|
|
15
|
+
}) : function(o, v) {
|
|
16
|
+
o["default"] = v;
|
|
9
17
|
});
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
var
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
|
|
27
|
-
|
|
28
|
-
function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
|
|
29
|
-
|
|
18
|
+
var __importStar = (this && this.__importStar) || function (mod) {
|
|
19
|
+
if (mod && mod.__esModule) return mod;
|
|
20
|
+
var result = {};
|
|
21
|
+
if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
|
|
22
|
+
__setModuleDefault(result, mod);
|
|
23
|
+
return result;
|
|
24
|
+
};
|
|
25
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
26
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
27
|
+
};
|
|
28
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
29
|
+
/* eslint-disable @typescript-eslint/no-explicit-any */
|
|
30
|
+
const prop_types_1 = __importDefault(require("prop-types"));
|
|
31
|
+
const react_1 = __importStar(require("react"));
|
|
32
|
+
const offscreenCanvasPonyfill_1 = require("../util/offscreenCanvasPonyfill");
|
|
30
33
|
function PrerenderedCanvas(props) {
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
}
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
return;
|
|
54
|
-
}
|
|
55
|
-
|
|
56
|
-
var context = canvas.getContext('2d');
|
|
57
|
-
|
|
58
|
-
if (!context) {
|
|
59
|
-
return;
|
|
60
|
-
}
|
|
61
|
-
|
|
62
|
-
(0, _offscreenCanvasPonyfill.drawImageOntoCanvasContext)(imageData, context);
|
|
63
|
-
setDone(true);
|
|
64
|
-
}, [imageData]);
|
|
65
|
-
var softClipString = showSoftClip ? '_softclipped' : '';
|
|
66
|
-
var blockKeyStr = blockKey ? '_' + blockKey : '';
|
|
67
|
-
var testId = "prerendered_canvas".concat(softClipString).concat(blockKeyStr).concat(done ? '_done' : '');
|
|
68
|
-
return /*#__PURE__*/_react.default.createElement("canvas", {
|
|
69
|
-
"data-testid": testId,
|
|
70
|
-
ref: featureCanvas,
|
|
71
|
-
width: width * highResolutionScaling,
|
|
72
|
-
height: height * highResolutionScaling,
|
|
73
|
-
style: _objectSpread({
|
|
74
|
-
width: width,
|
|
75
|
-
height: height
|
|
76
|
-
}, style)
|
|
77
|
-
});
|
|
34
|
+
const { width, height, highResolutionScaling, style, imageData, blockKey, showSoftClip, } = props;
|
|
35
|
+
const [done, setDone] = (0, react_1.useState)(false);
|
|
36
|
+
const featureCanvas = (0, react_1.useRef)(null);
|
|
37
|
+
(0, react_1.useEffect)(() => {
|
|
38
|
+
if (!imageData) {
|
|
39
|
+
return;
|
|
40
|
+
}
|
|
41
|
+
const canvas = featureCanvas.current;
|
|
42
|
+
if (!canvas) {
|
|
43
|
+
return;
|
|
44
|
+
}
|
|
45
|
+
const context = canvas.getContext('2d');
|
|
46
|
+
if (!context) {
|
|
47
|
+
return;
|
|
48
|
+
}
|
|
49
|
+
(0, offscreenCanvasPonyfill_1.drawImageOntoCanvasContext)(imageData, context);
|
|
50
|
+
setDone(true);
|
|
51
|
+
}, [imageData]);
|
|
52
|
+
const softClipString = showSoftClip ? '_softclipped' : '';
|
|
53
|
+
const blockKeyStr = blockKey ? '_' + blockKey : '';
|
|
54
|
+
const testId = `prerendered_canvas${softClipString}${blockKeyStr}${done ? '_done' : ''}`;
|
|
55
|
+
return (react_1.default.createElement("canvas", { "data-testid": testId, ref: featureCanvas, width: width * highResolutionScaling, height: height * highResolutionScaling, style: { width, height, ...style } }));
|
|
78
56
|
}
|
|
79
|
-
|
|
80
57
|
PrerenderedCanvas.propTypes = {
|
|
81
|
-
|
|
82
|
-
|
|
83
|
-
|
|
84
|
-
|
|
85
|
-
|
|
86
|
-
|
|
58
|
+
height: prop_types_1.default.number.isRequired,
|
|
59
|
+
width: prop_types_1.default.number.isRequired,
|
|
60
|
+
highResolutionScaling: prop_types_1.default.number,
|
|
61
|
+
style: prop_types_1.default.objectOf(prop_types_1.default.any),
|
|
62
|
+
imageData: prop_types_1.default.any,
|
|
63
|
+
// config: ReactPropTypes.objectOf(ReactPropTypes.any),
|
|
87
64
|
};
|
|
88
65
|
PrerenderedCanvas.defaultProps = {
|
|
89
|
-
|
|
90
|
-
|
|
91
|
-
|
|
92
|
-
|
|
66
|
+
imageData: undefined,
|
|
67
|
+
highResolutionScaling: 1,
|
|
68
|
+
style: {},
|
|
69
|
+
// config: {},
|
|
93
70
|
};
|
|
94
|
-
|
|
95
|
-
exports.default = _default;
|
|
71
|
+
exports.default = PrerenderedCanvas;
|
package/ui/ResizeHandle.js
CHANGED
|
@@ -1,123 +1,94 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
2
|
+
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
+
if (k2 === undefined) k2 = k;
|
|
4
|
+
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
+
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
6
|
+
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
+
}
|
|
8
|
+
Object.defineProperty(o, k2, desc);
|
|
9
|
+
}) : (function(o, m, k, k2) {
|
|
10
|
+
if (k2 === undefined) k2 = k;
|
|
11
|
+
o[k2] = m[k];
|
|
12
|
+
}));
|
|
13
|
+
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
|
|
14
|
+
Object.defineProperty(o, "default", { enumerable: true, value: v });
|
|
15
|
+
}) : function(o, v) {
|
|
16
|
+
o["default"] = v;
|
|
9
17
|
});
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
var
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
flexbox_verticalHandle: {
|
|
38
|
-
cursor: 'col-resize',
|
|
39
|
-
alignSelf: 'stretch' // the height: 100% is actually unable to function inside flexbox
|
|
40
|
-
|
|
41
|
-
},
|
|
42
|
-
flexbox_horizontalHandle: {
|
|
43
|
-
cursor: 'row-resize',
|
|
44
|
-
alignSelf: 'stretch' // similar to above
|
|
45
|
-
|
|
46
|
-
}
|
|
18
|
+
var __importStar = (this && this.__importStar) || function (mod) {
|
|
19
|
+
if (mod && mod.__esModule) return mod;
|
|
20
|
+
var result = {};
|
|
21
|
+
if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
|
|
22
|
+
__setModuleDefault(result, mod);
|
|
23
|
+
return result;
|
|
24
|
+
};
|
|
25
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
26
|
+
const react_1 = __importStar(require("react"));
|
|
27
|
+
const mui_1 = require("tss-react/mui");
|
|
28
|
+
const useStyles = (0, mui_1.makeStyles)()({
|
|
29
|
+
horizontalHandle: {
|
|
30
|
+
cursor: 'row-resize',
|
|
31
|
+
width: '100%',
|
|
32
|
+
},
|
|
33
|
+
verticalHandle: {
|
|
34
|
+
cursor: 'col-resize',
|
|
35
|
+
height: '100%',
|
|
36
|
+
},
|
|
37
|
+
flexbox_verticalHandle: {
|
|
38
|
+
cursor: 'col-resize',
|
|
39
|
+
alignSelf: 'stretch', // the height: 100% is actually unable to function inside flexbox
|
|
40
|
+
},
|
|
41
|
+
flexbox_horizontalHandle: {
|
|
42
|
+
cursor: 'row-resize',
|
|
43
|
+
alignSelf: 'stretch', // similar to above
|
|
44
|
+
},
|
|
47
45
|
});
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
|
|
62
|
-
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
68
|
-
|
|
69
|
-
|
|
70
|
-
|
|
71
|
-
|
|
72
|
-
|
|
73
|
-
|
|
74
|
-
|
|
75
|
-
|
|
76
|
-
|
|
77
|
-
|
|
78
|
-
|
|
79
|
-
|
|
80
|
-
|
|
81
|
-
|
|
82
|
-
|
|
46
|
+
function ResizeHandle({ onDrag, vertical = false, flexbox = false, className: originalClassName, ...props }) {
|
|
47
|
+
const [mouseDragging, setMouseDragging] = (0, react_1.useState)(false);
|
|
48
|
+
const prevPos = (0, react_1.useRef)(0);
|
|
49
|
+
const { classes, cx } = useStyles();
|
|
50
|
+
(0, react_1.useEffect)(() => {
|
|
51
|
+
function mouseMove(event) {
|
|
52
|
+
event.preventDefault();
|
|
53
|
+
const pos = vertical ? event.clientX : event.clientY;
|
|
54
|
+
const distance = pos - prevPos.current;
|
|
55
|
+
if (distance) {
|
|
56
|
+
onDrag(distance);
|
|
57
|
+
prevPos.current = pos;
|
|
58
|
+
}
|
|
59
|
+
}
|
|
60
|
+
function mouseUp() {
|
|
61
|
+
setMouseDragging(false);
|
|
62
|
+
}
|
|
63
|
+
if (mouseDragging) {
|
|
64
|
+
window.addEventListener('mousemove', mouseMove, true);
|
|
65
|
+
window.addEventListener('mouseup', mouseUp, true);
|
|
66
|
+
return () => {
|
|
67
|
+
window.removeEventListener('mousemove', mouseMove, true);
|
|
68
|
+
window.removeEventListener('mouseup', mouseUp, true);
|
|
69
|
+
};
|
|
70
|
+
}
|
|
71
|
+
return () => { };
|
|
72
|
+
}, [mouseDragging, onDrag, vertical]);
|
|
73
|
+
let className;
|
|
74
|
+
if (flexbox) {
|
|
75
|
+
if (vertical) {
|
|
76
|
+
className = classes.flexbox_verticalHandle;
|
|
77
|
+
}
|
|
78
|
+
else {
|
|
79
|
+
className = classes.flexbox_horizontalHandle;
|
|
80
|
+
}
|
|
83
81
|
}
|
|
84
|
-
|
|
85
|
-
|
|
86
|
-
window.addEventListener('mousemove', mouseMove, true);
|
|
87
|
-
window.addEventListener('mouseup', mouseUp, true);
|
|
88
|
-
return function () {
|
|
89
|
-
window.removeEventListener('mousemove', mouseMove, true);
|
|
90
|
-
window.removeEventListener('mouseup', mouseUp, true);
|
|
91
|
-
};
|
|
82
|
+
else if (vertical) {
|
|
83
|
+
className = classes.verticalHandle;
|
|
92
84
|
}
|
|
93
|
-
|
|
94
|
-
|
|
95
|
-
}, [mouseDragging, onDrag, vertical]);
|
|
96
|
-
var className;
|
|
97
|
-
|
|
98
|
-
if (flexbox) {
|
|
99
|
-
if (vertical) {
|
|
100
|
-
className = classes.flexbox_verticalHandle;
|
|
101
|
-
} else {
|
|
102
|
-
className = classes.flexbox_horizontalHandle;
|
|
85
|
+
else {
|
|
86
|
+
className = classes.horizontalHandle;
|
|
103
87
|
}
|
|
104
|
-
|
|
105
|
-
|
|
106
|
-
|
|
107
|
-
|
|
108
|
-
|
|
109
|
-
|
|
110
|
-
return /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
|
|
111
|
-
"data-resizer": "true",
|
|
112
|
-
onMouseDown: function onMouseDown(event) {
|
|
113
|
-
event.preventDefault();
|
|
114
|
-
prevPos.current = vertical ? event.clientX : event.clientY;
|
|
115
|
-
setMouseDragging(true);
|
|
116
|
-
},
|
|
117
|
-
role: "presentation",
|
|
118
|
-
className: cx(className, originalClassName)
|
|
119
|
-
}, props));
|
|
88
|
+
return (react_1.default.createElement("div", { "data-resizer": "true", onMouseDown: event => {
|
|
89
|
+
event.preventDefault();
|
|
90
|
+
prevPos.current = vertical ? event.clientX : event.clientY;
|
|
91
|
+
setMouseDragging(true);
|
|
92
|
+
}, role: "presentation", className: cx(className, originalClassName), ...props }));
|
|
120
93
|
}
|
|
121
|
-
|
|
122
|
-
var _default = ResizeHandle;
|
|
123
|
-
exports.default = _default;
|
|
94
|
+
exports.default = ResizeHandle;
|
|
@@ -1,67 +1,36 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
Object.defineProperty(exports, "__esModule", {
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
var _mobxReact = require("mobx-react");
|
|
13
|
-
|
|
14
|
-
var _material = require("@mui/material");
|
|
15
|
-
|
|
16
|
-
var _mui = require("tss-react/mui");
|
|
17
|
-
|
|
18
|
-
var _Close = _interopRequireDefault(require("@mui/icons-material/Close"));
|
|
19
|
-
|
|
20
|
-
var useStyles = (0, _mui.makeStyles)()(function (theme) {
|
|
21
|
-
return {
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
const react_1 = __importDefault(require("react"));
|
|
7
|
+
const mobx_react_1 = require("mobx-react");
|
|
8
|
+
const material_1 = require("@mui/material");
|
|
9
|
+
const mui_1 = require("tss-react/mui");
|
|
10
|
+
const Close_1 = __importDefault(require("@mui/icons-material/Close"));
|
|
11
|
+
const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
22
12
|
closeButton: {
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
}
|
|
28
|
-
};
|
|
29
|
-
});
|
|
30
|
-
|
|
31
|
-
function ReturnToImportFormDialog(_ref) {
|
|
32
|
-
var model = _ref.model,
|
|
33
|
-
handleClose = _ref.handleClose;
|
|
34
|
-
|
|
35
|
-
var _useStyles = useStyles(),
|
|
36
|
-
classes = _useStyles.classes;
|
|
37
|
-
|
|
38
|
-
return /*#__PURE__*/_react.default.createElement(_material.Dialog, {
|
|
39
|
-
maxWidth: "xl",
|
|
40
|
-
open: true,
|
|
41
|
-
onClose: handleClose
|
|
42
|
-
}, /*#__PURE__*/_react.default.createElement(_material.DialogTitle, null, "Reference sequence", handleClose ? /*#__PURE__*/_react.default.createElement(_material.IconButton, {
|
|
43
|
-
className: classes.closeButton,
|
|
44
|
-
onClick: function onClick() {
|
|
45
|
-
return handleClose();
|
|
13
|
+
position: 'absolute',
|
|
14
|
+
right: theme.spacing(1),
|
|
15
|
+
top: theme.spacing(1),
|
|
16
|
+
color: theme.palette.grey[500],
|
|
46
17
|
},
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
|
|
62
|
-
|
|
18
|
+
}));
|
|
19
|
+
function ReturnToImportFormDialog({ model, handleClose, }) {
|
|
20
|
+
const { classes } = useStyles();
|
|
21
|
+
return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
|
|
22
|
+
react_1.default.createElement(material_1.DialogTitle, null,
|
|
23
|
+
"Reference sequence",
|
|
24
|
+
handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
|
|
25
|
+
react_1.default.createElement(Close_1.default, null))) : null),
|
|
26
|
+
react_1.default.createElement(material_1.Divider, null),
|
|
27
|
+
react_1.default.createElement(material_1.DialogContent, null,
|
|
28
|
+
react_1.default.createElement(material_1.Typography, null, "Are you sure you want to return to the import form? This will lose your current view")),
|
|
29
|
+
react_1.default.createElement(material_1.DialogActions, null,
|
|
30
|
+
react_1.default.createElement(material_1.Button, { onClick: () => {
|
|
31
|
+
model.clearView();
|
|
32
|
+
handleClose();
|
|
33
|
+
}, variant: "contained", color: "primary", autoFocus: true }, "OK"),
|
|
34
|
+
react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "secondary", variant: "contained" }, "Cancel"))));
|
|
63
35
|
}
|
|
64
|
-
|
|
65
|
-
var _default = (0, _mobxReact.observer)(ReturnToImportFormDialog);
|
|
66
|
-
|
|
67
|
-
exports.default = _default;
|
|
36
|
+
exports.default = (0, mobx_react_1.observer)(ReturnToImportFormDialog);
|
package/ui/SanitizedHTML.js
CHANGED
|
@@ -1,57 +1,74 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
Object.defineProperty(exports, "__esModule", {
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
|
|
11
|
-
var _react = _interopRequireDefault(require("react"));
|
|
12
|
-
|
|
13
|
-
var _escapeHtml = _interopRequireDefault(require("escape-html"));
|
|
14
|
-
|
|
15
|
-
var _dompurify = _interopRequireDefault(require("dompurify"));
|
|
16
|
-
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
exports.isHTML = void 0;
|
|
7
|
+
const react_1 = __importDefault(require("react"));
|
|
8
|
+
const escape_html_1 = __importDefault(require("escape-html"));
|
|
9
|
+
const dompurify_1 = __importDefault(require("dompurify"));
|
|
17
10
|
// source https://github.com/sindresorhus/html-tags/blob/master/html-tags.json
|
|
18
11
|
// with some random uncommon ones removed. note: we just use this to run the content
|
|
19
12
|
// through dompurify without escaping if we see an htmlTag from this list
|
|
20
13
|
// otherwise we escape angle brackets and things prematurely because it might be
|
|
21
14
|
// something like <TRA> in VCF. Ref #657
|
|
22
|
-
|
|
23
|
-
|
|
15
|
+
const htmlTags = [
|
|
16
|
+
'a',
|
|
17
|
+
'b',
|
|
18
|
+
'br',
|
|
19
|
+
'code',
|
|
20
|
+
'div',
|
|
21
|
+
'em',
|
|
22
|
+
'h1',
|
|
23
|
+
'h2',
|
|
24
|
+
'h3',
|
|
25
|
+
'h4',
|
|
26
|
+
'h5',
|
|
27
|
+
'h6',
|
|
28
|
+
'i',
|
|
29
|
+
'img',
|
|
30
|
+
'li',
|
|
31
|
+
'p',
|
|
32
|
+
'pre',
|
|
33
|
+
'span',
|
|
34
|
+
'small',
|
|
35
|
+
'strong',
|
|
36
|
+
'table',
|
|
37
|
+
'tbody',
|
|
38
|
+
'td',
|
|
39
|
+
'tfoot',
|
|
40
|
+
'th',
|
|
41
|
+
'thead',
|
|
42
|
+
'tr',
|
|
43
|
+
'u',
|
|
44
|
+
'ul',
|
|
45
|
+
];
|
|
46
|
+
let added = false;
|
|
47
|
+
// adapted from is-html
|
|
24
48
|
// https://github.com/sindresorhus/is-html/blob/master/index.js
|
|
25
|
-
|
|
26
|
-
var full = new RegExp(htmlTags.map(function (tag) {
|
|
27
|
-
return "<".concat(tag, "\\b[^>]*>");
|
|
28
|
-
}).join('|'), 'i');
|
|
29
|
-
|
|
49
|
+
const full = new RegExp(htmlTags.map(tag => `<${tag}\\b[^>]*>`).join('|'), 'i');
|
|
30
50
|
function isHTML(str) {
|
|
31
|
-
|
|
51
|
+
return full.test(str);
|
|
32
52
|
}
|
|
33
|
-
|
|
34
|
-
function SanitizedHTML(
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
}
|
|
48
|
-
});
|
|
49
|
-
}
|
|
50
|
-
|
|
51
|
-
return /*#__PURE__*/_react.default.createElement("div", {
|
|
52
|
-
// eslint-disable-next-line react/no-danger
|
|
53
|
-
dangerouslySetInnerHTML: {
|
|
54
|
-
__html: _dompurify.default.sanitize(value)
|
|
53
|
+
exports.isHTML = isHTML;
|
|
54
|
+
function SanitizedHTML({ html }) {
|
|
55
|
+
const value = isHTML(html) ? html : (0, escape_html_1.default)(html);
|
|
56
|
+
if (!added) {
|
|
57
|
+
added = true;
|
|
58
|
+
// see https://github.com/cure53/DOMPurify/issues/317
|
|
59
|
+
// only have to add this once, and can't do it globally because dompurify
|
|
60
|
+
// not yet initialized at global scope
|
|
61
|
+
dompurify_1.default.addHook('afterSanitizeAttributes', (node) => {
|
|
62
|
+
if (node.tagName === 'A') {
|
|
63
|
+
node.setAttribute('rel', 'noopener noreferrer');
|
|
64
|
+
node.setAttribute('target', '_blank');
|
|
65
|
+
}
|
|
66
|
+
});
|
|
55
67
|
}
|
|
56
|
-
|
|
57
|
-
|
|
68
|
+
return (react_1.default.createElement("div", {
|
|
69
|
+
// eslint-disable-next-line react/no-danger
|
|
70
|
+
dangerouslySetInnerHTML: {
|
|
71
|
+
__html: dompurify_1.default.sanitize(value),
|
|
72
|
+
} }));
|
|
73
|
+
}
|
|
74
|
+
exports.default = SanitizedHTML;
|