@jbrowse/core 2.0.0 → 2.1.2

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Files changed (184) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +9 -3
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -581
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -478
  4. package/BaseFeatureWidget/index.js +88 -126
  5. package/BaseFeatureWidget/types.d.ts +1 -0
  6. package/BaseFeatureWidget/types.js +1 -4
  7. package/BaseFeatureWidget/util.js +40 -75
  8. package/CorePlugin.js +55 -94
  9. package/Plugin.js +9 -34
  10. package/PluginLoader.js +153 -422
  11. package/PluginManager.d.ts +28 -33
  12. package/PluginManager.js +377 -666
  13. package/ReExports/Attributes.js +3 -10
  14. package/ReExports/BaseCard.js +3 -10
  15. package/ReExports/DataGrid.js +5 -12
  16. package/ReExports/FeatureDetails.js +3 -10
  17. package/ReExports/index.js +6 -12
  18. package/ReExports/list.d.ts +5 -0
  19. package/ReExports/list.js +271 -7
  20. package/ReExports/material-ui-colors.js +15 -16
  21. package/ReExports/modules.d.ts +11 -20
  22. package/ReExports/modules.js +453 -798
  23. package/TextSearch/BaseResults.js +51 -123
  24. package/TextSearch/TextSearchManager.js +66 -144
  25. package/assemblyManager/assembly.js +280 -555
  26. package/assemblyManager/assemblyConfigSchema.js +47 -64
  27. package/assemblyManager/assemblyManager.js +126 -272
  28. package/assemblyManager/index.js +9 -22
  29. package/configuration/configurationSchema.js +167 -203
  30. package/configuration/configurationSlot.js +248 -326
  31. package/configuration/index.js +19 -35
  32. package/configuration/util.js +131 -173
  33. package/data_adapters/BaseAdapter.d.ts +2 -2
  34. package/data_adapters/BaseAdapter.js +132 -521
  35. package/data_adapters/CytobandAdapter.js +40 -126
  36. package/data_adapters/dataAdapterCache.js +77 -158
  37. package/package.json +4 -5
  38. package/pluggableElementTypes/AdapterType.js +24 -79
  39. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  40. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  41. package/pluggableElementTypes/ConnectionType.js +22 -65
  42. package/pluggableElementTypes/DisplayType.js +35 -82
  43. package/pluggableElementTypes/InternetAccountType.js +23 -64
  44. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  45. package/pluggableElementTypes/RpcMethodType.js +85 -427
  46. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  47. package/pluggableElementTypes/TrackType.js +26 -70
  48. package/pluggableElementTypes/ViewType.js +21 -63
  49. package/pluggableElementTypes/WidgetType.js +21 -64
  50. package/pluggableElementTypes/index.d.ts +4 -3
  51. package/pluggableElementTypes/index.js +42 -125
  52. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  53. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  54. package/pluggableElementTypes/models/BaseTrackModel.js +139 -199
  55. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  56. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  57. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  58. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  59. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  60. package/pluggableElementTypes/models/index.js +21 -70
  61. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  62. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  63. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  64. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  65. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -255
  66. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  67. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  68. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  69. package/pluggableElementTypes/renderers/index.js +19 -62
  70. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  71. package/rpc/BaseRpcDriver.js +169 -405
  72. package/rpc/MainThreadRpcDriver.js +27 -150
  73. package/rpc/RpcManager.js +58 -159
  74. package/rpc/WebWorkerRpcDriver.js +54 -171
  75. package/rpc/configSchema.js +25 -49
  76. package/rpc/coreRpcMethods.d.ts +1 -3
  77. package/rpc/coreRpcMethods.js +221 -959
  78. package/rpc/remoteAbortSignals.js +46 -70
  79. package/tsconfig.build.tsbuildinfo +1 -1
  80. package/ui/AboutDialog.js +106 -162
  81. package/ui/App.js +157 -242
  82. package/ui/AssemblySelector.js +59 -120
  83. package/ui/CascadingMenu.js +101 -196
  84. package/ui/ColorPicker.d.ts +16 -0
  85. package/ui/ColorPicker.js +97 -0
  86. package/ui/Drawer.js +28 -61
  87. package/ui/DrawerWidget.js +108 -202
  88. package/ui/DropDownMenu.js +60 -91
  89. package/ui/EditableTypography.js +87 -149
  90. package/ui/ErrorMessage.js +41 -56
  91. package/ui/FactoryResetDialog.js +24 -57
  92. package/ui/FatalErrorDialog.js +59 -91
  93. package/ui/FileSelector/FileSelector.js +123 -189
  94. package/ui/FileSelector/LocalFileChooser.js +44 -75
  95. package/ui/FileSelector/UrlChooser.js +17 -38
  96. package/ui/FileSelector/index.js +6 -12
  97. package/ui/Icons.js +45 -69
  98. package/ui/Logo.js +57 -110
  99. package/ui/Menu.js +232 -354
  100. package/ui/PrerenderedCanvas.js +63 -87
  101. package/ui/ResizeHandle.js +87 -116
  102. package/ui/ReturnToImportFormDialog.js +32 -63
  103. package/ui/SanitizedHTML.js +64 -47
  104. package/ui/Snackbar.js +74 -101
  105. package/ui/SnackbarModel.js +37 -51
  106. package/ui/Tooltip.js +49 -76
  107. package/ui/ViewContainer.js +113 -196
  108. package/ui/colors.d.ts +10 -0
  109. package/ui/colors.js +78 -0
  110. package/ui/index.js +51 -181
  111. package/ui/react-colorful.d.ts +17 -0
  112. package/ui/react-colorful.js +455 -0
  113. package/ui/theme.d.ts +23 -1
  114. package/ui/theme.js +199 -247
  115. package/util/Base1DUtils.d.ts +32 -0
  116. package/util/Base1DUtils.js +174 -0
  117. package/util/Base1DViewModel.d.ts +16 -30
  118. package/util/Base1DViewModel.js +116 -293
  119. package/util/QuickLRU.js +84 -332
  120. package/util/TimeTraveller.d.ts +19 -0
  121. package/util/TimeTraveller.js +86 -0
  122. package/util/aborting.js +49 -127
  123. package/util/analytics.js +91 -154
  124. package/util/blockTypes.js +106 -240
  125. package/util/calculateDynamicBlocks.js +98 -128
  126. package/util/calculateStaticBlocks.js +105 -125
  127. package/util/color/cssColorsLevel4.js +156 -160
  128. package/util/color/index.js +33 -55
  129. package/util/compositeMap.js +49 -333
  130. package/util/formatFastaStrings.js +9 -14
  131. package/util/idMaker.js +18 -31
  132. package/util/index.d.ts +18 -32
  133. package/util/index.js +747 -1226
  134. package/util/io/RemoteFileWithRangeCache.js +88 -257
  135. package/util/io/index.js +95 -169
  136. package/util/jexl.js +60 -115
  137. package/util/jexlStrings.js +24 -29
  138. package/util/layouts/BaseLayout.js +1 -4
  139. package/util/layouts/GranularRectLayout.js +388 -555
  140. package/util/layouts/MultiLayout.js +41 -109
  141. package/util/layouts/PrecomputedLayout.js +56 -112
  142. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  143. package/util/layouts/SceneGraph.js +127 -197
  144. package/util/layouts/index.js +29 -66
  145. package/util/mst-reflection.js +55 -71
  146. package/util/offscreenCanvasPonyfill.js +66 -134
  147. package/util/offscreenCanvasUtils.d.ts +2 -7
  148. package/util/offscreenCanvasUtils.js +49 -146
  149. package/util/range.js +29 -40
  150. package/util/rxjs.js +20 -27
  151. package/util/simpleFeature.js +88 -152
  152. package/util/stats.js +91 -151
  153. package/util/tracks.js +130 -173
  154. package/util/types/index.js +110 -179
  155. package/util/types/mst.js +91 -146
  156. package/util/types/util.js +1 -4
  157. package/util/when.js +54 -101
  158. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  159. package/BaseFeatureWidget/index.test.js +0 -69
  160. package/TextSearch/BaseResults.test.js +0 -42
  161. package/configuration/configurationSchema.test.js +0 -266
  162. package/configuration/configurationSlot.test.js +0 -69
  163. package/configuration/util.test.js +0 -39
  164. package/data_adapters/BaseAdapter.test.js +0 -200
  165. package/declare.d.js +0 -1
  166. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  167. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  168. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  169. package/rpc/BaseRpcDriver.test.js +0 -540
  170. package/rpc/declaration.d.js +0 -1
  171. package/ui/FatalErrorDialog.test.js +0 -82
  172. package/ui/SanitizedHTML.test.js +0 -36
  173. package/ui/theme.test.js +0 -92
  174. package/util/Base1DViewModel.test.js +0 -130
  175. package/util/calculateDynamicBlocks.test.js +0 -74
  176. package/util/calculateStaticBlocks.test.js +0 -297
  177. package/util/declare.d.js +0 -1
  178. package/util/formatFastaStrings.test.js +0 -40
  179. package/util/index.test.js +0 -213
  180. package/util/jexlStrings.test.js +0 -48
  181. package/util/layouts/GranularRectLayout.test.js +0 -99
  182. package/util/range.test.js +0 -64
  183. package/util/simpleFeature.test.js +0 -34
  184. package/util/stats.test.js +0 -172
@@ -1,266 +0,0 @@
1
- "use strict";
2
-
3
- var _mobxStateTree = require("mobx-state-tree");
4
-
5
- var _configurationSchema = require("./configurationSchema");
6
-
7
- var _util = require("./util");
8
-
9
- var _ = require(".");
10
-
11
- describe('configuration schemas', function () {
12
- test('can make a schema with a color', function () {
13
- var container = _mobxStateTree.types.model({
14
- configuration: (0, _configurationSchema.ConfigurationSchema)('Track', {
15
- backgroundColor: {
16
- description: "the track's background color",
17
- type: 'color',
18
- defaultValue: '#eee'
19
- },
20
- someInteger: {
21
- description: 'an integer slot',
22
- type: 'integer',
23
- defaultValue: 12
24
- }
25
- })
26
- });
27
-
28
- var model = container.create();
29
- expect((0, _util.isConfigurationModel)(model.configuration)).toBe(true);
30
- expect((0, _.getConf)(model, 'backgroundColor')).toBe('#eee');
31
- expect((0, _.getConf)(model, 'someInteger')).toBe(12);
32
- model.configuration.backgroundColor.set("jexl:'#'+a");
33
- expect((0, _.getConf)(model, 'backgroundColor', {
34
- a: 'zonk'
35
- })).toBe('#zonk');
36
- expect((0, _.getConf)(model, 'backgroundColor', {
37
- a: 'bar'
38
- })).toBe('#bar');
39
- model.configuration.backgroundColor.set('hoog');
40
- expect((0, _.getConf)(model, 'backgroundColor', {
41
- a: 'zonk'
42
- })).toBe('hoog');
43
- model.configuration.someInteger.set('jexl:5+a');
44
- expect((0, _.getConf)(model, 'someInteger', {
45
- a: 5
46
- })).toBe(10);
47
- model.configuration.someInteger.set(42);
48
- expect((0, _.getConf)(model, 'someInteger', {
49
- a: 5
50
- })).toBe(42);
51
- });
52
- test('can nest an array of configuration schemas', function () {
53
- var container = _mobxStateTree.types.model({
54
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
55
- someInteger: {
56
- description: 'an integer slot',
57
- type: 'integer',
58
- defaultValue: 12
59
- },
60
- myArrayOfSubConfigurations: _mobxStateTree.types.array((0, _configurationSchema.ConfigurationSchema)('SubObject', {
61
- someNumber: {
62
- description: 'some number in a subconfiguration',
63
- type: 'number',
64
- defaultValue: 4.3
65
- }
66
- }))
67
- })
68
- });
69
-
70
- var model = container.create();
71
- expect((0, _.getConf)(model, 'someInteger')).toBe(12); // expect(getConf(model, 'myArrayOfSubConfigurations')).toBe(undefined)
72
- });
73
- test('can nest a single subconfiguration schema', function () {
74
- var container = _mobxStateTree.types.model({
75
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
76
- someInteger: {
77
- description: 'an integer slot',
78
- type: 'integer',
79
- defaultValue: 12
80
- },
81
- mySubConfiguration: (0, _configurationSchema.ConfigurationSchema)('SubObject', {
82
- someNumber: {
83
- description: 'some number in a subconfiguration',
84
- type: 'number',
85
- defaultValue: 4.3
86
- }
87
- })
88
- })
89
- });
90
-
91
- var model = container.create();
92
- expect((0, _util.isConfigurationModel)(model.configuration)).toBe(true);
93
- expect((0, _.getConf)(model, 'someInteger')).toBe(12); // expect(getConf(model, 'mySubConfiguration.someNumber')).toBe(4.3)
94
- });
95
- test('can snapshot a simple schema', function () {
96
- var container = _mobxStateTree.types.model({
97
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
98
- someInteger: {
99
- description: 'an integer slot',
100
- type: 'integer',
101
- defaultValue: 12
102
- }
103
- })
104
- });
105
-
106
- var model = container.create({
107
- configuration: {
108
- someInteger: 42
109
- }
110
- });
111
- expect((0, _.getConf)(model, 'someInteger')).toEqual(42);
112
- expect((0, _mobxStateTree.getSnapshot)(model)).toEqual({
113
- configuration: {
114
- someInteger: 42
115
- }
116
- });
117
- expect((0, _.getConf)(model, 'someInteger')).toEqual(42);
118
- var model2 = container.create({
119
- configuration: {}
120
- });
121
- expect((0, _mobxStateTree.getSnapshot)(model2)).toEqual({
122
- configuration: {}
123
- });
124
- expect((0, _.getConf)(model2, 'someInteger')).toEqual(12);
125
- });
126
- test('can snapshot a nested schema 1', function () {
127
- var container = _mobxStateTree.types.model({
128
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
129
- someInteger: {
130
- description: 'an integer slot',
131
- type: 'integer',
132
- defaultValue: 12
133
- },
134
- mySubConfiguration: (0, _configurationSchema.ConfigurationSchema)('SubObject1', {
135
- someNumber: {
136
- description: 'some number in a subconfiguration',
137
- type: 'number',
138
- defaultValue: 4.3
139
- }
140
- }),
141
- myArrayOfSubConfigurations: _mobxStateTree.types.array((0, _configurationSchema.ConfigurationSchema)('SubObject2', {
142
- someNumber: {
143
- description: 'some number in a subconfiguration',
144
- type: 'number',
145
- defaultValue: 3.5
146
- }
147
- }))
148
- })
149
- });
150
-
151
- var model = container.create({
152
- configuration: {
153
- someInteger: 42,
154
- mySubConfiguration: {},
155
- myArrayOfSubConfigurations: [{
156
- someNumber: 3.5
157
- }, {
158
- someNumber: 11.1
159
- }]
160
- }
161
- });
162
- expect((0, _mobxStateTree.getSnapshot)(model)).toEqual({
163
- configuration: {
164
- someInteger: 42,
165
- // mySubConfiguration is set to the default, so doesn't appear in snapshot
166
- myArrayOfSubConfigurations: [{}, {
167
- someNumber: 11.1
168
- }]
169
- }
170
- });
171
- });
172
- test('can snapshot a nested schema 2', function () {
173
- var container = _mobxStateTree.types.model({
174
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
175
- someInteger: {
176
- description: 'an integer slot',
177
- type: 'integer',
178
- defaultValue: 12
179
- },
180
- myConfigurationMap: _mobxStateTree.types.map((0, _configurationSchema.ConfigurationSchema)('MappedConfiguration', {
181
- mappedValue: {
182
- description: 'something in a mapped configuration',
183
- type: 'number',
184
- defaultValue: 101
185
- }
186
- })),
187
- mySubConfiguration: (0, _configurationSchema.ConfigurationSchema)('SubObject1', {
188
- someNumber: {
189
- description: 'some number in a subconfiguration',
190
- type: 'number',
191
- defaultValue: 4.3
192
- }
193
- }),
194
- myArrayOfSubConfigurations: _mobxStateTree.types.array((0, _configurationSchema.ConfigurationSchema)('SubObject2', {
195
- someNumber: {
196
- description: 'some number in a subconfiguration',
197
- type: 'number',
198
- defaultValue: 3.5
199
- }
200
- }))
201
- })
202
- });
203
-
204
- var model = container.create({
205
- configuration: {
206
- someInteger: 12,
207
- myConfigurationMap: {
208
- nog: {}
209
- },
210
- mySubConfiguration: {
211
- someNumber: 12
212
- }
213
- }
214
- });
215
- expect((0, _mobxStateTree.getSnapshot)(model)).toEqual({
216
- configuration: {
217
- myConfigurationMap: {
218
- nog: {}
219
- },
220
- mySubConfiguration: {
221
- someNumber: 12
222
- }
223
- }
224
- });
225
- expect((0, _.getConf)(model, ['mySubConfiguration', 'someNumber'])).toEqual(12);
226
- });
227
- test('re-check instantiation of slots (issue #797)', function () {
228
- var configSchema = (0, _configurationSchema.ConfigurationSchema)('Gff3TabixAdapter', {
229
- gffGzLocation: {
230
- type: 'fileLocation',
231
- defaultValue: {
232
- uri: '/path/to/my.gff.gz',
233
- locationType: 'UriLocation'
234
- }
235
- },
236
- index: (0, _configurationSchema.ConfigurationSchema)('Gff3TabixIndex', {
237
- indexType: {
238
- model: _mobxStateTree.types.enumeration('IndexType', ['TBI', 'CSI']),
239
- type: 'stringEnum',
240
- defaultValue: 'TBI'
241
- },
242
- location: {
243
- type: 'fileLocation',
244
- defaultValue: {
245
- uri: '/path/to/my.gff.gz.tbi',
246
- locationType: 'UriLocation'
247
- }
248
- }
249
- }),
250
- dontRedispatch: {
251
- type: 'stringArray',
252
- defaultValue: ['chromosome', 'region']
253
- },
254
- thisShouldGetInstantiated: {
255
- type: 'string',
256
- defaultValue: 'Not instantiated'
257
- }
258
- }, {
259
- explicitlyTyped: true
260
- });
261
- var tester = configSchema.create();
262
- expect((0, _.readConfObject)(tester, 'dontRedispatch')[0]).toBe('chromosome');
263
- expect((0, _.readConfObject)(tester, 'thisShouldGetInstantiated')).toBe('Not instantiated');
264
- expect((0, _.readConfObject)(tester, ['index', 'indexType'])).toBe('TBI');
265
- });
266
- });
@@ -1,69 +0,0 @@
1
- "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- var _configurationSlot = _interopRequireDefault(require("./configurationSlot"));
6
-
7
- test('can convert a string slot to and from a callback', function () {
8
- var model = (0, _configurationSlot.default)('tester', {
9
- type: 'string',
10
- defaultValue: 'foo'
11
- });
12
- var instance = model.create();
13
- expect(instance.value).toBe('foo');
14
- expect(instance.expr.evalSync()).toBe('foo');
15
- instance.convertToCallback();
16
- expect(instance.value).toBe('jexl:"foo"');
17
- expect(instance.expr.evalSync()).toBe('foo');
18
- instance.convertToValue();
19
- expect(instance.value).toBe('foo');
20
- expect(instance.expr.evalSync()).toBe('foo');
21
- });
22
- test('can convert a numeric slot to and from a callback', function () {
23
- var model = (0, _configurationSlot.default)('tester', {
24
- type: 'number',
25
- defaultValue: 12,
26
- contextVariable: ['something']
27
- });
28
- var instance = model.create();
29
- expect(instance.value).toBe(12);
30
- expect(instance.expr.evalSync()).toBe(12);
31
- instance.convertToCallback();
32
- expect(instance.value).toBe('jexl:12');
33
- expect(instance.expr.evalSync()).toBe(12);
34
- });
35
- test('can convert a stringArray slot to and from a callback', function () {
36
- var model = (0, _configurationSlot.default)('tester', {
37
- type: 'stringArray',
38
- defaultValue: ['foo', 'bar']
39
- });
40
- var instance = model.create();
41
- expect(instance.value).toEqual(['foo', 'bar']);
42
- expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
43
- instance.convertToCallback();
44
- expect(instance.value).toContain('jexl:');
45
- expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
46
- instance.convertToValue();
47
- expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
48
- expect(instance.value).toEqual(['foo', 'bar']);
49
- });
50
- test('can convert a slot with a default function value to a scalar value', function () {
51
- var model = (0, _configurationSlot.default)('tester', {
52
- type: 'string',
53
- defaultValue: 'jexl:get(feature,"foo")'
54
- });
55
- var instance = model.create();
56
- expect(instance.value).toBe('jexl:get(feature,"foo")');
57
- expect(function () {
58
- return instance.expr.evalSync();
59
- }).toThrow();
60
- instance.convertToCallback();
61
- expect(instance.value).toBe('jexl:get(feature,"foo")');
62
- expect(function () {
63
- return instance.expr.evalSync();
64
- }).toThrow();
65
- instance.convertToValue();
66
- expect(instance.value).not.toContain('jexl:');
67
- expect(instance.value).toBe('');
68
- expect(instance.expr.evalSync()).toEqual('');
69
- });
@@ -1,39 +0,0 @@
1
- "use strict";
2
-
3
- var _mobxStateTree = require("mobx-state-tree");
4
-
5
- var _configurationSchema = require("./configurationSchema");
6
-
7
- var _util = require("./util");
8
-
9
- describe('getTypeNamesFromExplicitlyTypedUnion', function () {
10
- test('regular config schemas', function () {
11
- var one = (0, _configurationSchema.ConfigurationSchema)('One', {}, {
12
- explicitlyTyped: true
13
- });
14
- var two = (0, _configurationSchema.ConfigurationSchema)('Two', {}, {
15
- explicitlyTyped: true
16
- });
17
-
18
- var u = _mobxStateTree.types.union(one, two);
19
-
20
- var names = (0, _util.getTypeNamesFromExplicitlyTypedUnion)(u);
21
- expect(names).toEqual(['One', 'Two']);
22
- });
23
- test('late config schemas', function () {
24
- var one = (0, _configurationSchema.ConfigurationSchema)('One', {}, {
25
- explicitlyTyped: true
26
- });
27
-
28
- var two = _mobxStateTree.types.late(function () {
29
- return (0, _configurationSchema.ConfigurationSchema)('Two', {}, {
30
- explicitlyTyped: true
31
- });
32
- });
33
-
34
- var u = _mobxStateTree.types.union(one, two);
35
-
36
- var names = (0, _util.getTypeNamesFromExplicitlyTypedUnion)(u);
37
- expect(names).toEqual(['One', 'Two']);
38
- });
39
- });
@@ -1,200 +0,0 @@
1
- "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
6
-
7
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
8
-
9
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
10
-
11
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
12
-
13
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
14
-
15
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
16
-
17
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
18
-
19
- var _operators = require("rxjs/operators");
20
-
21
- var _BaseAdapter = require("./BaseAdapter");
22
-
23
- var _rxjs = require("../util/rxjs");
24
-
25
- var _simpleFeature = _interopRequireDefault(require("../util/simpleFeature"));
26
-
27
- var _configurationSchema = require("../configuration/configurationSchema");
28
-
29
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
30
-
31
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
32
-
33
- describe('base data adapter', function () {
34
- it('properly propagates errors in feature fetching', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
35
- var Adapter, adapter, features, featuresArray;
36
- return _regenerator.default.wrap(function _callee2$(_context2) {
37
- while (1) {
38
- switch (_context2.prev = _context2.next) {
39
- case 0:
40
- Adapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
41
- (0, _inherits2.default)(Adapter, _BaseFeatureDataAdapt);
42
-
43
- var _super = _createSuper(Adapter);
44
-
45
- function Adapter() {
46
- (0, _classCallCheck2.default)(this, Adapter);
47
- return _super.apply(this, arguments);
48
- }
49
-
50
- (0, _createClass2.default)(Adapter, [{
51
- key: "getRefNames",
52
- value: function () {
53
- var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
54
- return _regenerator.default.wrap(function _callee$(_context) {
55
- while (1) {
56
- switch (_context.prev = _context.next) {
57
- case 0:
58
- return _context.abrupt("return", ['ctgA', 'ctgB']);
59
-
60
- case 1:
61
- case "end":
62
- return _context.stop();
63
- }
64
- }
65
- }, _callee);
66
- }));
67
-
68
- function getRefNames() {
69
- return _getRefNames.apply(this, arguments);
70
- }
71
-
72
- return getRefNames;
73
- }()
74
- }, {
75
- key: "getFeatures",
76
- value: function getFeatures(_region) {
77
- return (0, _rxjs.ObservableCreate)(function () {
78
- return Promise.reject(new Error('something blew up'));
79
- });
80
- }
81
- }, {
82
- key: "freeResources",
83
- value: function freeResources() {}
84
- }]);
85
- return Adapter;
86
- }(_BaseAdapter.BaseFeatureDataAdapter);
87
-
88
- adapter = new Adapter((0, _configurationSchema.ConfigurationSchema)('empty', {}).create());
89
- features = adapter.getFeatures({
90
- assemblyName: 'volvox',
91
- refName: 'ctgA',
92
- start: 0,
93
- end: 20000
94
- });
95
- featuresArray = features.pipe((0, _operators.toArray)()).toPromise();
96
- expect(featuresArray).rejects.toThrow(/something blew up/);
97
-
98
- case 5:
99
- case "end":
100
- return _context2.stop();
101
- }
102
- }
103
- }, _callee2);
104
- })));
105
- it('retrieves features', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
106
- var Adapter, adapter, features, featuresArray, features2, featuresArray2;
107
- return _regenerator.default.wrap(function _callee4$(_context4) {
108
- while (1) {
109
- switch (_context4.prev = _context4.next) {
110
- case 0:
111
- Adapter = /*#__PURE__*/function (_BaseFeatureDataAdapt2) {
112
- (0, _inherits2.default)(Adapter, _BaseFeatureDataAdapt2);
113
-
114
- var _super2 = _createSuper(Adapter);
115
-
116
- function Adapter() {
117
- (0, _classCallCheck2.default)(this, Adapter);
118
- return _super2.apply(this, arguments);
119
- }
120
-
121
- (0, _createClass2.default)(Adapter, [{
122
- key: "getRefNames",
123
- value: function () {
124
- var _getRefNames2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
125
- return _regenerator.default.wrap(function _callee3$(_context3) {
126
- while (1) {
127
- switch (_context3.prev = _context3.next) {
128
- case 0:
129
- return _context3.abrupt("return", ['ctgA', 'ctgB']);
130
-
131
- case 1:
132
- case "end":
133
- return _context3.stop();
134
- }
135
- }
136
- }, _callee3);
137
- }));
138
-
139
- function getRefNames() {
140
- return _getRefNames2.apply(this, arguments);
141
- }
142
-
143
- return getRefNames;
144
- }()
145
- }, {
146
- key: "getFeatures",
147
- value: function getFeatures(region) {
148
- return (0, _rxjs.ObservableCreate)(function (observer) {
149
- if (region.refName === 'ctgA') {
150
- observer.next(new _simpleFeature.default({
151
- uniqueId: 'testFeature',
152
- start: 100,
153
- end: 200
154
- }));
155
- }
156
-
157
- observer.complete();
158
- });
159
- }
160
- }, {
161
- key: "freeResources",
162
- value: function freeResources() {}
163
- }]);
164
- return Adapter;
165
- }(_BaseAdapter.BaseFeatureDataAdapter);
166
-
167
- adapter = new Adapter((0, _configurationSchema.ConfigurationSchema)('empty', {}).create());
168
- features = adapter.getFeatures({
169
- assemblyName: 'volvox',
170
- refName: 'ctgA',
171
- start: 0,
172
- end: 20000
173
- });
174
- _context4.next = 5;
175
- return features.pipe((0, _operators.toArray)()).toPromise();
176
-
177
- case 5:
178
- featuresArray = _context4.sent;
179
- expect(featuresArray).toMatchInlineSnapshot("\n Array [\n Object {\n \"end\": 200,\n \"start\": 100,\n \"uniqueId\": \"testFeature\",\n },\n ]\n ");
180
- features2 = adapter.getFeatures({
181
- assemblyName: 'volvox',
182
- refName: 'ctgC',
183
- start: 0,
184
- end: 20000
185
- });
186
- _context4.next = 10;
187
- return features2.pipe((0, _operators.toArray)()).toPromise();
188
-
189
- case 10:
190
- featuresArray2 = _context4.sent;
191
- expect(featuresArray2).toMatchInlineSnapshot('Array []');
192
-
193
- case 12:
194
- case "end":
195
- return _context4.stop();
196
- }
197
- }
198
- }, _callee4);
199
- })));
200
- });
package/declare.d.js DELETED
@@ -1 +0,0 @@
1
- "use strict";
@@ -1,118 +0,0 @@
1
- "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.MockRpcMethodType = void 0;
9
-
10
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
-
12
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
13
-
14
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
15
-
16
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
17
-
18
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
19
-
20
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
21
-
22
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
23
-
24
- var _PluginManager = _interopRequireDefault(require("../PluginManager"));
25
-
26
- var _RpcMethodType2 = _interopRequireDefault(require("./RpcMethodType"));
27
-
28
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
29
-
30
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
31
-
32
- var pluginManager = new _PluginManager.default();
33
-
34
- var MockRpcMethodType = /*#__PURE__*/function (_RpcMethodType) {
35
- (0, _inherits2.default)(MockRpcMethodType, _RpcMethodType);
36
-
37
- var _super = _createSuper(MockRpcMethodType);
38
-
39
- function MockRpcMethodType() {
40
- (0, _classCallCheck2.default)(this, MockRpcMethodType);
41
- return _super.apply(this, arguments);
42
- }
43
-
44
- (0, _createClass2.default)(MockRpcMethodType, [{
45
- key: "execute",
46
- value: function () {
47
- var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
48
- return _regenerator.default.wrap(function _callee$(_context) {
49
- while (1) {
50
- switch (_context.prev = _context.next) {
51
- case 0:
52
- case "end":
53
- return _context.stop();
54
- }
55
- }
56
- }, _callee);
57
- }));
58
-
59
- function execute() {
60
- return _execute.apply(this, arguments);
61
- }
62
-
63
- return execute;
64
- }()
65
- }]);
66
- return MockRpcMethodType;
67
- }(_RpcMethodType2.default);
68
-
69
- exports.MockRpcMethodType = MockRpcMethodType;
70
- test('test serialize arguments with augmentLocationObject', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
71
- var mockRpc, locationInAdapter, deeplyNestedLocation;
72
- return _regenerator.default.wrap(function _callee2$(_context2) {
73
- while (1) {
74
- switch (_context2.prev = _context2.next) {
75
- case 0:
76
- mockRpc = new MockRpcMethodType(pluginManager);
77
- mockRpc.serializeNewAuthArguments = jest.fn().mockReturnValue({
78
- locationType: 'UriLocation',
79
- uri: 'test',
80
- internetAccountId: 'HTTPBasicInternetAccount-test'
81
- });
82
- locationInAdapter = {
83
- locationType: 'UriLocation',
84
- uri: 'test',
85
- internetAccountId: 'HTTPBasicInternetAccount-test'
86
- };
87
- deeplyNestedLocation = {
88
- locationType: 'UriLocation',
89
- uri: 'test2',
90
- internetAccountId: 'HTTPBasicInternetAccount-test2'
91
- };
92
- _context2.next = 6;
93
- return mockRpc.serializeArguments({
94
- adapter: {
95
- testLocation: locationInAdapter
96
- },
97
- filters: [],
98
- signal: 'teststring',
99
- randomProperty: 'randomstring',
100
- parentObject: {
101
- nestedObject: {
102
- arrayInNestedObject: [deeplyNestedLocation]
103
- }
104
- }
105
- }, '');
106
-
107
- case 6:
108
- expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledTimes(2);
109
- expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledWith(locationInAdapter);
110
- expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledWith(deeplyNestedLocation);
111
-
112
- case 9:
113
- case "end":
114
- return _context2.stop();
115
- }
116
- }
117
- }, _callee2);
118
- })));