@jbrowse/core 1.5.3 → 1.5.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -2
- package/BaseFeatureWidget/BaseFeatureDetail.js +113 -100
- package/BaseFeatureWidget/SequenceFeatureDetails.js +59 -66
- package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
- package/BaseFeatureWidget/index.js +1 -1
- package/BaseFeatureWidget/index.test.js +3 -3
- package/BaseFeatureWidget/types.js +5 -1
- package/BaseFeatureWidget/util.js +9 -13
- package/CorePlugin.js +19 -31
- package/Plugin.js +11 -13
- package/PluginLoader.js +33 -38
- package/PluginManager.d.ts +5 -5
- package/PluginManager.js +55 -60
- package/ReExports/index.js +4 -4
- package/ReExports/list.js +2 -2
- package/ReExports/material-ui-colors.js +20 -20
- package/ReExports/modules.js +47 -51
- package/TextSearch/BaseResults.js +24 -34
- package/TextSearch/BaseResults.test.js +3 -7
- package/TextSearch/TextSearchManager.d.ts +1 -1
- package/TextSearch/TextSearchManager.js +15 -18
- package/assemblyManager/assembly.js +34 -39
- package/assemblyManager/assemblyConfigSchema.js +2 -2
- package/assemblyManager/assemblyManager.js +16 -20
- package/assemblyManager/index.js +3 -3
- package/configuration/configurationSchema.js +17 -19
- package/configuration/configurationSlot.js +11 -11
- package/configuration/configurationSlot.test.js +5 -5
- package/configuration/util.js +5 -5
- package/data_adapters/BaseAdapter.d.ts +4 -4
- package/data_adapters/BaseAdapter.js +36 -47
- package/data_adapters/BaseAdapter.test.js +24 -30
- package/data_adapters/CytobandAdapter.js +16 -22
- package/data_adapters/dataAdapterCache.js +9 -9
- package/package.json +7 -7
- package/pluggableElementTypes/AdapterType.js +22 -29
- package/pluggableElementTypes/ConnectionType.js +18 -26
- package/pluggableElementTypes/DisplayType.js +17 -25
- package/pluggableElementTypes/InternetAccountType.js +14 -22
- package/pluggableElementTypes/PluggableElementBase.js +9 -10
- package/pluggableElementTypes/RpcMethodType.js +40 -56
- package/pluggableElementTypes/RpcMethodType.test.js +17 -23
- package/pluggableElementTypes/TextSearchAdapterType.js +15 -23
- package/pluggableElementTypes/TrackType.js +15 -25
- package/pluggableElementTypes/ViewType.js +15 -25
- package/pluggableElementTypes/WidgetType.js +17 -25
- package/pluggableElementTypes/index.js +11 -11
- package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
- package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
- package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
- package/pluggableElementTypes/models/BaseViewModel.js +3 -3
- package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
- package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
- package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
- package/pluggableElementTypes/models/index.js +4 -4
- package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
- package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -16
- package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
- package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
- package/pluggableElementTypes/renderers/RendererType.js +21 -31
- package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
- package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
- package/pluggableElementTypes/renderers/index.js +8 -8
- package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
- package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
- package/rpc/BaseRpcDriver.d.ts +1 -1
- package/rpc/BaseRpcDriver.js +37 -42
- package/rpc/BaseRpcDriver.test.js +49 -63
- package/rpc/MainThreadRpcDriver.js +22 -32
- package/rpc/RpcManager.d.ts +2 -2
- package/rpc/RpcManager.js +20 -25
- package/rpc/WebWorkerRpcDriver.d.ts +2 -2
- package/rpc/WebWorkerRpcDriver.js +29 -40
- package/rpc/configSchema.js +2 -2
- package/rpc/coreRpcMethods.js +72 -82
- package/rpc/remoteAbortSignals.js +3 -3
- package/ui/AboutDialog.js +17 -21
- package/ui/App.js +38 -42
- package/ui/AssemblySelector.js +5 -5
- package/ui/Drawer.js +7 -7
- package/ui/DrawerWidget.js +33 -37
- package/ui/DropDownMenu.js +9 -21
- package/ui/EditableTypography.js +19 -30
- package/ui/ErrorMessage.js +5 -5
- package/ui/FactoryResetDialog.js +8 -8
- package/ui/FatalErrorDialog.js +12 -29
- package/ui/FatalErrorDialog.test.js +11 -11
- package/ui/FileSelector/FileSelector.js +32 -42
- package/ui/FileSelector/LocalFileChooser.js +9 -9
- package/ui/FileSelector/UrlChooser.js +4 -4
- package/ui/FileSelector/index.js +4 -4
- package/ui/Icons.js +9 -9
- package/ui/Logo.js +19 -19
- package/ui/Menu.js +35 -46
- package/ui/NewSessionCards.js +19 -29
- package/ui/PrerenderedCanvas.js +10 -27
- package/ui/ResizeHandle.js +10 -17
- package/ui/SanitizedHTML.js +5 -5
- package/ui/SanitizedHTML.test.js +4 -4
- package/ui/Snackbar.js +12 -16
- package/ui/SnackbarModel.js +1 -1
- package/ui/Tooltip.js +7 -11
- package/ui/ViewContainer.js +20 -30
- package/ui/index.js +13 -17
- package/ui/theme.js +11 -15
- package/util/Base1DViewModel.js +10 -14
- package/util/Base1DViewModel.test.js +5 -5
- package/util/QuickLRU.js +27 -31
- package/util/aborting.js +16 -24
- package/util/analytics.js +7 -7
- package/util/blockTypes.js +36 -49
- package/util/calculateDynamicBlocks.js +4 -4
- package/util/calculateDynamicBlocks.test.js +10 -14
- package/util/calculateStaticBlocks.js +1 -1
- package/util/calculateStaticBlocks.test.js +15 -15
- package/util/compositeMap.js +30 -41
- package/util/idMaker.js +4 -4
- package/util/index.js +35 -48
- package/util/index.test.js +7 -11
- package/util/io/RemoteFileWithRangeCache.js +29 -41
- package/util/io/index.js +6 -6
- package/util/jexl.js +8 -5
- package/util/jexlStrings.js +2 -2
- package/util/jexlStrings.test.js +2 -2
- package/util/layouts/BaseLayout.js +5 -1
- package/util/layouts/GranularRectLayout.js +28 -34
- package/util/layouts/GranularRectLayout.test.js +10 -10
- package/util/layouts/MultiLayout.d.ts +1 -1
- package/util/layouts/MultiLayout.js +14 -21
- package/util/layouts/PrecomputedLayout.js +14 -16
- package/util/layouts/PrecomputedMultiLayout.js +18 -22
- package/util/layouts/SceneGraph.d.ts +3 -3
- package/util/layouts/SceneGraph.js +17 -31
- package/util/layouts/index.js +6 -6
- package/util/mst-reflection.d.ts +3 -3
- package/util/offscreenCanvasPonyfill.js +29 -31
- package/util/offscreenCanvasUtils.js +6 -6
- package/util/range.test.js +20 -20
- package/util/rxjs.js +2 -2
- package/util/simpleFeature.js +19 -24
- package/util/simpleFeature.test.js +3 -3
- package/util/stats.js +7 -11
- package/util/stats.test.js +15 -15
- package/util/types/index.d.ts +2 -0
- package/util/types/index.js +29 -36
- package/util/types/mst.js +15 -19
- package/util/types/util.js +5 -1
- package/util/when.js +6 -6
- package/babel.config.d.ts +0 -15
- package/babel.config.js +0 -19
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break;
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398
382
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}
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@@ -421,6 +405,6 @@ var RpcMethodType = /*#__PURE__*/function (_PluggableElementBase) {
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421
405
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}()
|
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422
406
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}]);
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407
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return RpcMethodType;
|
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424
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-
}(_PluggableElementBase2
|
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408
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+
}(_PluggableElementBase2["default"]);
|
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425
409
|
|
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426
|
-
exports
|
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410
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+
exports["default"] = RpcMethodType;
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@@ -1,51 +1,45 @@
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1
1
|
"use strict";
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2
2
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3
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-
var _interopRequireDefault = require("
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3
|
+
var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
|
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4
4
|
|
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5
5
|
Object.defineProperty(exports, "__esModule", {
|
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6
6
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value: true
|
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7
7
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});
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8
8
|
exports.MockRpcMethodType = void 0;
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9
9
|
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10
|
-
var
|
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10
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+
var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
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11
11
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|
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12
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-
var _asyncToGenerator2 = _interopRequireDefault(require("
|
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12
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+
var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
|
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13
13
|
|
|
14
|
-
var _classCallCheck2 = _interopRequireDefault(require("
|
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14
|
+
var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
|
|
15
15
|
|
|
16
|
-
var _createClass2 = _interopRequireDefault(require("
|
|
16
|
+
var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
|
|
17
17
|
|
|
18
|
-
var _inherits2 = _interopRequireDefault(require("
|
|
18
|
+
var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
|
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19
19
|
|
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20
|
-
var
|
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21
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-
|
|
22
|
-
var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
|
|
20
|
+
var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
|
|
23
21
|
|
|
24
22
|
var _PluginManager = _interopRequireDefault(require("../PluginManager"));
|
|
25
23
|
|
|
26
24
|
var _RpcMethodType2 = _interopRequireDefault(require("./RpcMethodType"));
|
|
27
25
|
|
|
28
|
-
|
|
29
|
-
|
|
30
|
-
function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
|
|
31
|
-
|
|
32
|
-
var pluginManager = new _PluginManager.default();
|
|
26
|
+
var pluginManager = new _PluginManager["default"]();
|
|
33
27
|
|
|
34
28
|
var MockRpcMethodType = /*#__PURE__*/function (_RpcMethodType) {
|
|
35
|
-
(0, _inherits2
|
|
29
|
+
(0, _inherits2["default"])(MockRpcMethodType, _RpcMethodType);
|
|
36
30
|
|
|
37
|
-
var _super =
|
|
31
|
+
var _super = (0, _createSuper2["default"])(MockRpcMethodType);
|
|
38
32
|
|
|
39
33
|
function MockRpcMethodType() {
|
|
40
|
-
(0, _classCallCheck2
|
|
34
|
+
(0, _classCallCheck2["default"])(this, MockRpcMethodType);
|
|
41
35
|
return _super.apply(this, arguments);
|
|
42
36
|
}
|
|
43
37
|
|
|
44
|
-
(0, _createClass2
|
|
38
|
+
(0, _createClass2["default"])(MockRpcMethodType, [{
|
|
45
39
|
key: "execute",
|
|
46
40
|
value: function () {
|
|
47
|
-
var _execute = (0, _asyncToGenerator2
|
|
48
|
-
return
|
|
41
|
+
var _execute = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
|
|
42
|
+
return _index["default"].wrap(function _callee$(_context) {
|
|
49
43
|
while (1) {
|
|
50
44
|
switch (_context.prev = _context.next) {
|
|
51
45
|
case 0:
|
|
@@ -64,12 +58,12 @@ var MockRpcMethodType = /*#__PURE__*/function (_RpcMethodType) {
|
|
|
64
58
|
}()
|
|
65
59
|
}]);
|
|
66
60
|
return MockRpcMethodType;
|
|
67
|
-
}(_RpcMethodType2
|
|
61
|
+
}(_RpcMethodType2["default"]);
|
|
68
62
|
|
|
69
63
|
exports.MockRpcMethodType = MockRpcMethodType;
|
|
70
|
-
test('test serialize arguments with augmentLocationObject', /*#__PURE__*/(0, _asyncToGenerator2
|
|
64
|
+
test('test serialize arguments with augmentLocationObject', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
|
|
71
65
|
var mockRpc, locationInAdapter, deeplyNestedLocation;
|
|
72
|
-
return
|
|
66
|
+
return _index["default"].wrap(function _callee2$(_context2) {
|
|
73
67
|
while (1) {
|
|
74
68
|
switch (_context2.prev = _context2.next) {
|
|
75
69
|
case 0:
|