@jbrowse/core 1.5.3 → 1.5.7

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Files changed (150) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -2
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +113 -100
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +59 -66
  4. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  5. package/BaseFeatureWidget/index.js +1 -1
  6. package/BaseFeatureWidget/index.test.js +3 -3
  7. package/BaseFeatureWidget/types.js +5 -1
  8. package/BaseFeatureWidget/util.js +9 -13
  9. package/CorePlugin.js +19 -31
  10. package/Plugin.js +11 -13
  11. package/PluginLoader.js +33 -38
  12. package/PluginManager.d.ts +5 -5
  13. package/PluginManager.js +55 -60
  14. package/ReExports/index.js +4 -4
  15. package/ReExports/list.js +2 -2
  16. package/ReExports/material-ui-colors.js +20 -20
  17. package/ReExports/modules.js +47 -51
  18. package/TextSearch/BaseResults.js +24 -34
  19. package/TextSearch/BaseResults.test.js +3 -7
  20. package/TextSearch/TextSearchManager.d.ts +1 -1
  21. package/TextSearch/TextSearchManager.js +15 -18
  22. package/assemblyManager/assembly.js +34 -39
  23. package/assemblyManager/assemblyConfigSchema.js +2 -2
  24. package/assemblyManager/assemblyManager.js +16 -20
  25. package/assemblyManager/index.js +3 -3
  26. package/configuration/configurationSchema.js +17 -19
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/util.js +5 -5
  30. package/data_adapters/BaseAdapter.d.ts +4 -4
  31. package/data_adapters/BaseAdapter.js +36 -47
  32. package/data_adapters/BaseAdapter.test.js +24 -30
  33. package/data_adapters/CytobandAdapter.js +16 -22
  34. package/data_adapters/dataAdapterCache.js +9 -9
  35. package/package.json +7 -7
  36. package/pluggableElementTypes/AdapterType.js +22 -29
  37. package/pluggableElementTypes/ConnectionType.js +18 -26
  38. package/pluggableElementTypes/DisplayType.js +17 -25
  39. package/pluggableElementTypes/InternetAccountType.js +14 -22
  40. package/pluggableElementTypes/PluggableElementBase.js +9 -10
  41. package/pluggableElementTypes/RpcMethodType.js +40 -56
  42. package/pluggableElementTypes/RpcMethodType.test.js +17 -23
  43. package/pluggableElementTypes/TextSearchAdapterType.js +15 -23
  44. package/pluggableElementTypes/TrackType.js +15 -25
  45. package/pluggableElementTypes/ViewType.js +15 -25
  46. package/pluggableElementTypes/WidgetType.js +17 -25
  47. package/pluggableElementTypes/index.js +11 -11
  48. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  49. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  50. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  51. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  52. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  53. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  54. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  55. package/pluggableElementTypes/models/index.js +4 -4
  56. package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
  57. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -16
  58. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
  59. package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
  60. package/pluggableElementTypes/renderers/RendererType.js +21 -31
  61. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  62. package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
  63. package/pluggableElementTypes/renderers/index.js +8 -8
  64. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  65. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  66. package/rpc/BaseRpcDriver.d.ts +1 -1
  67. package/rpc/BaseRpcDriver.js +37 -42
  68. package/rpc/BaseRpcDriver.test.js +49 -63
  69. package/rpc/MainThreadRpcDriver.js +22 -32
  70. package/rpc/RpcManager.d.ts +2 -2
  71. package/rpc/RpcManager.js +20 -25
  72. package/rpc/WebWorkerRpcDriver.d.ts +2 -2
  73. package/rpc/WebWorkerRpcDriver.js +29 -40
  74. package/rpc/configSchema.js +2 -2
  75. package/rpc/coreRpcMethods.js +72 -82
  76. package/rpc/remoteAbortSignals.js +3 -3
  77. package/ui/AboutDialog.js +17 -21
  78. package/ui/App.js +38 -42
  79. package/ui/AssemblySelector.js +5 -5
  80. package/ui/Drawer.js +7 -7
  81. package/ui/DrawerWidget.js +33 -37
  82. package/ui/DropDownMenu.js +9 -21
  83. package/ui/EditableTypography.js +19 -30
  84. package/ui/ErrorMessage.js +5 -5
  85. package/ui/FactoryResetDialog.js +8 -8
  86. package/ui/FatalErrorDialog.js +12 -29
  87. package/ui/FatalErrorDialog.test.js +11 -11
  88. package/ui/FileSelector/FileSelector.js +32 -42
  89. package/ui/FileSelector/LocalFileChooser.js +9 -9
  90. package/ui/FileSelector/UrlChooser.js +4 -4
  91. package/ui/FileSelector/index.js +4 -4
  92. package/ui/Icons.js +9 -9
  93. package/ui/Logo.js +19 -19
  94. package/ui/Menu.js +35 -46
  95. package/ui/NewSessionCards.js +19 -29
  96. package/ui/PrerenderedCanvas.js +10 -27
  97. package/ui/ResizeHandle.js +10 -17
  98. package/ui/SanitizedHTML.js +5 -5
  99. package/ui/SanitizedHTML.test.js +4 -4
  100. package/ui/Snackbar.js +12 -16
  101. package/ui/SnackbarModel.js +1 -1
  102. package/ui/Tooltip.js +7 -11
  103. package/ui/ViewContainer.js +20 -30
  104. package/ui/index.js +13 -17
  105. package/ui/theme.js +11 -15
  106. package/util/Base1DViewModel.js +10 -14
  107. package/util/Base1DViewModel.test.js +5 -5
  108. package/util/QuickLRU.js +27 -31
  109. package/util/aborting.js +16 -24
  110. package/util/analytics.js +7 -7
  111. package/util/blockTypes.js +36 -49
  112. package/util/calculateDynamicBlocks.js +4 -4
  113. package/util/calculateDynamicBlocks.test.js +10 -14
  114. package/util/calculateStaticBlocks.js +1 -1
  115. package/util/calculateStaticBlocks.test.js +15 -15
  116. package/util/compositeMap.js +30 -41
  117. package/util/idMaker.js +4 -4
  118. package/util/index.js +35 -48
  119. package/util/index.test.js +7 -11
  120. package/util/io/RemoteFileWithRangeCache.js +29 -41
  121. package/util/io/index.js +6 -6
  122. package/util/jexl.js +8 -5
  123. package/util/jexlStrings.js +2 -2
  124. package/util/jexlStrings.test.js +2 -2
  125. package/util/layouts/BaseLayout.js +5 -1
  126. package/util/layouts/GranularRectLayout.js +28 -34
  127. package/util/layouts/GranularRectLayout.test.js +10 -10
  128. package/util/layouts/MultiLayout.d.ts +1 -1
  129. package/util/layouts/MultiLayout.js +14 -21
  130. package/util/layouts/PrecomputedLayout.js +14 -16
  131. package/util/layouts/PrecomputedMultiLayout.js +18 -22
  132. package/util/layouts/SceneGraph.d.ts +3 -3
  133. package/util/layouts/SceneGraph.js +17 -31
  134. package/util/layouts/index.js +6 -6
  135. package/util/mst-reflection.d.ts +3 -3
  136. package/util/offscreenCanvasPonyfill.js +29 -31
  137. package/util/offscreenCanvasUtils.js +6 -6
  138. package/util/range.test.js +20 -20
  139. package/util/rxjs.js +2 -2
  140. package/util/simpleFeature.js +19 -24
  141. package/util/simpleFeature.test.js +3 -3
  142. package/util/stats.js +7 -11
  143. package/util/stats.test.js +15 -15
  144. package/util/types/index.d.ts +2 -0
  145. package/util/types/index.js +29 -36
  146. package/util/types/mst.js +15 -19
  147. package/util/types/util.js +5 -1
  148. package/util/when.js +6 -6
  149. package/babel.config.d.ts +0 -15
  150. package/babel.config.js +0 -19
package/util/aborting.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
@@ -11,51 +11,43 @@ exports.isAbortException = isAbortException;
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  exports.makeAbortError = makeAbortError;
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  exports.observeAbortSignal = observeAbortSignal;
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- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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- var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
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+ var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
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+ var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
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-
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- var _wrapNativeSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/wrapNativeSuper"));
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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  var _rxjs = require("rxjs");
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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-
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- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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-
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  var AbortError = /*#__PURE__*/function (_Error) {
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- (0, _inherits2.default)(AbortError, _Error);
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+ (0, _inherits2["default"])(AbortError, _Error);
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- var _super = _createSuper(AbortError);
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+ var _super = (0, _createSuper2["default"])(AbortError);
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  function AbortError() {
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  var _this;
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- (0, _classCallCheck2.default)(this, AbortError);
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+ (0, _classCallCheck2["default"])(this, AbortError);
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  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
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  args[_key] = arguments[_key];
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  }
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  _this = _super.call.apply(_super, [this].concat(args));
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- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "code", void 0);
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+ _this.code = void 0;
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  return _this;
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  }
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- return AbortError;
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- }( /*#__PURE__*/(0, _wrapNativeSuper2.default)(Error));
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+ return (0, _createClass2["default"])(AbortError);
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+ }( /*#__PURE__*/(0, _wrapNativeSuper2["default"])(Error));
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  /**
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@@ -100,8 +92,8 @@ function abortBreakPoint(_x) {
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  function _abortBreakPoint() {
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- _abortBreakPoint = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(signal) {
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- return _regenerator.default.wrap(function _callee$(_context) {
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+ _abortBreakPoint = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(signal) {
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  while (1) {
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  case 0:
package/util/analytics.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  value: true
@@ -8,9 +8,9 @@ Object.defineProperty(exports, "__esModule", {
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  exports.writeAWSAnalytics = writeAWSAnalytics;
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+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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@@ -22,9 +22,9 @@ function writeAWSAnalytics(_x, _x2, _x3) {
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  }
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  function _writeAWSAnalytics() {
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- _writeAWSAnalytics = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(rootModel, initialTimeStamp, sessionQuery) {
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  var url, multiAssemblyTracks, savedSessionCount, config, session, ver, tracks, assemblies, plugins, stats, qs;
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- return _regenerator.default.wrap(function _callee$(_context) {
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+ return _index["default"].wrap(function _callee$(_context) {
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  while (1) {
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@@ -104,11 +104,11 @@ function writeGAAnalytics(_x4, _x5) {
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  }
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- _writeGAAnalytics = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(rootModel, initialTimestamp) {
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+ _writeGAAnalytics = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(rootModel, initialTimestamp) {
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  var _rootModel$jbrowse$pl;
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- return _regenerator.default.wrap(function _callee2$(_context2) {
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+ return _index["default"].wrap(function _callee2$(_context2) {
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  switch (_context2.prev = _context2.next) {
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@@ -1,43 +1,30 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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-
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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  }
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@@ -133,18 +120,18 @@ var BaseBlock = /*#__PURE__*/function () {
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+ this.widthPx = 0;
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150
137
  this.refName = data.refName;
@@ -162,12 +149,12 @@ var BaseBlock = /*#__PURE__*/function () {
162
149
  */
163
150
 
164
151
 
165
- (0, _createClass2.default)(BaseBlock, [{
152
+ (0, _createClass2["default"])(BaseBlock, [{
166
153
  key: "renameReference",
167
154
  value: function renameReference(refName) {
168
155
  if (this.refName && refName !== this.refName) {
169
156
  // eslint-disable-next-line @typescript-eslint/no-explicit-any
170
- return new this.constructor(_objectSpread(_objectSpread({}, this), {}, {
157
+ return new this.constructor((0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, this), {}, {
171
158
  refName: refName
172
159
  }));
173
160
  }
@@ -192,16 +179,16 @@ var BaseBlock = /*#__PURE__*/function () {
192
179
  exports.BaseBlock = BaseBlock;
193
180
 
194
181
  var ContentBlock = /*#__PURE__*/function (_BaseBlock) {
195
- (0, _inherits2.default)(ContentBlock, _BaseBlock);
182
+ (0, _inherits2["default"])(ContentBlock, _BaseBlock);
196
183
 
197
- var _super = _createSuper(ContentBlock);
184
+ var _super = (0, _createSuper2["default"])(ContentBlock);
198
185
 
199
186
  function ContentBlock() {
200
- (0, _classCallCheck2.default)(this, ContentBlock);
187
+ (0, _classCallCheck2["default"])(this, ContentBlock);
201
188
  return _super.apply(this, arguments);
202
189
  }
203
190
 
204
- return ContentBlock;
191
+ return (0, _createClass2["default"])(ContentBlock);
205
192
  }(BaseBlock);
206
193
  /**
207
194
  * marker block representing one or more blocks that are
@@ -212,23 +199,23 @@ var ContentBlock = /*#__PURE__*/function (_BaseBlock) {
212
199
  exports.ContentBlock = ContentBlock;
213
200
 
214
201
  var ElidedBlock = /*#__PURE__*/function (_BaseBlock2) {
215
- (0, _inherits2.default)(ElidedBlock, _BaseBlock2);
202
+ (0, _inherits2["default"])(ElidedBlock, _BaseBlock2);
216
203
 
217
- var _super2 = _createSuper(ElidedBlock);
204
+ var _super2 = (0, _createSuper2["default"])(ElidedBlock);
218
205
 
219
206
  // eslint-disable-next-line @typescript-eslint/no-explicit-any
220
207
  function ElidedBlock(data) {
221
208
  var _this;
222
209
 
223
- (0, _classCallCheck2.default)(this, ElidedBlock);
210
+ (0, _classCallCheck2["default"])(this, ElidedBlock);
224
211
  _this = _super2.call(this, data);
225
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "widthPx", void 0);
226
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "elidedBlockCount", 0);
212
+ _this.widthPx = void 0;
213
+ _this.elidedBlockCount = 0;
227
214
  _this.widthPx = data.widthPx;
228
215
  return _this;
229
216
  }
230
217
 
231
- (0, _createClass2.default)(ElidedBlock, [{
218
+ (0, _createClass2["default"])(ElidedBlock, [{
232
219
  key: "push",
233
220
  value: function push(otherBlock) {
234
221
  this.elidedBlockCount += 1;
@@ -252,16 +239,16 @@ var ElidedBlock = /*#__PURE__*/function (_BaseBlock2) {
252
239
  exports.ElidedBlock = ElidedBlock;
253
240
 
254
241
  var InterRegionPaddingBlock = /*#__PURE__*/function (_BaseBlock3) {
255
- (0, _inherits2.default)(InterRegionPaddingBlock, _BaseBlock3);
242
+ (0, _inherits2["default"])(InterRegionPaddingBlock, _BaseBlock3);
256
243
 
257
- var _super3 = _createSuper(InterRegionPaddingBlock);
244
+ var _super3 = (0, _createSuper2["default"])(InterRegionPaddingBlock);
258
245
 
259
246
  function InterRegionPaddingBlock() {
260
- (0, _classCallCheck2.default)(this, InterRegionPaddingBlock);
247
+ (0, _classCallCheck2["default"])(this, InterRegionPaddingBlock);
261
248
  return _super3.apply(this, arguments);
262
249
  }
263
250
 
264
- return InterRegionPaddingBlock;
251
+ return (0, _createClass2["default"])(InterRegionPaddingBlock);
265
252
  }(BaseBlock);
266
253
 
267
254
  exports.InterRegionPaddingBlock = InterRegionPaddingBlock;
@@ -1,13 +1,13 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = calculateDynamicBlocks;
8
+ exports["default"] = calculateDynamicBlocks;
9
9
 
10
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
10
+ var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
11
11
 
12
12
  var _range = require("./range");
13
13
 
@@ -64,7 +64,7 @@ function calculateDynamicBlocks(model) {
64
64
  if (displayedRegionLeftPx < windowRightPx && displayedRegionRightPx > windowLeftPx) {
65
65
  // this displayed region overlaps the view, so make a record for it
66
66
  var _intersection = (0, _range.intersection2)(windowLeftPx, windowRightPx, displayedRegionLeftPx, displayedRegionRightPx),
67
- _intersection2 = (0, _slicedToArray2.default)(_intersection, 2),
67
+ _intersection2 = (0, _slicedToArray2["default"])(_intersection, 2),
68
68
  leftPx = _intersection2[0],
69
69
  rightPx = _intersection2[1];
70
70
 
@@ -1,15 +1,11 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
5
+ var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
6
6
 
7
7
  var _calculateDynamicBlocks = _interopRequireDefault(require("./calculateDynamicBlocks"));
8
8
 
9
- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
10
-
11
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
12
-
13
9
  var ctgA = {
14
10
  assemblyName: 'test',
15
11
  refName: 'ctgA',
@@ -17,7 +13,7 @@ var ctgA = {
17
13
  end: 50000
18
14
  };
19
15
  test('one', function () {
20
- expect((0, _calculateDynamicBlocks.default)({
16
+ expect((0, _calculateDynamicBlocks["default"])({
21
17
  offsetPx: 0,
22
18
  width: 200,
23
19
  displayedRegions: [ctgA],
@@ -27,10 +23,10 @@ test('one', function () {
27
23
  }).getBlocks()).toMatchSnapshot();
28
24
  });
29
25
  test('two', function () {
30
- expect((0, _calculateDynamicBlocks.default)({
26
+ expect((0, _calculateDynamicBlocks["default"])({
31
27
  offsetPx: 0,
32
28
  width: 200,
33
- displayedRegions: [_objectSpread(_objectSpread({}, ctgA), {}, {
29
+ displayedRegions: [(0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, ctgA), {}, {
34
30
  reversed: true
35
31
  })],
36
32
  bpPerPx: 1,
@@ -39,10 +35,10 @@ test('two', function () {
39
35
  }).getBlocks()).toMatchSnapshot();
40
36
  });
41
37
  test('three', function () {
42
- expect((0, _calculateDynamicBlocks.default)({
38
+ expect((0, _calculateDynamicBlocks["default"])({
43
39
  offsetPx: -100,
44
40
  width: 200,
45
- displayedRegions: [_objectSpread(_objectSpread({}, ctgA), {}, {
41
+ displayedRegions: [(0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, ctgA), {}, {
46
42
  reversed: true
47
43
  })],
48
44
  bpPerPx: 1,
@@ -51,7 +47,7 @@ test('three', function () {
51
47
  }).getBlocks()).toMatchSnapshot();
52
48
  });
53
49
  test('four', function () {
54
- expect((0, _calculateDynamicBlocks.default)({
50
+ expect((0, _calculateDynamicBlocks["default"])({
55
51
  offsetPx: -100,
56
52
  width: 350,
57
53
  displayedRegions: [ctgA],
@@ -61,10 +57,10 @@ test('four', function () {
61
57
  }).getBlocks()).toMatchSnapshot();
62
58
  });
63
59
  test('five', function () {
64
- expect((0, _calculateDynamicBlocks.default)({
60
+ expect((0, _calculateDynamicBlocks["default"])({
65
61
  offsetPx: 521,
66
62
  width: 927,
67
- displayedRegions: [_objectSpread(_objectSpread({}, ctgA), {}, {
63
+ displayedRegions: [(0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, ctgA), {}, {
68
64
  reversed: false
69
65
  })],
70
66
  bpPerPx: 0.05,
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports.default = calculateStaticBlocks;
6
+ exports["default"] = calculateStaticBlocks;
7
7
 
8
8
  var _ = require(".");
9
9
 
@@ -1,12 +1,12 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  var _calculateStaticBlocks = _interopRequireDefault(require("./calculateStaticBlocks"));
6
6
 
7
7
  describe('block calculation', function () {
8
8
  it('can calculate some blocks 1', function () {
9
- var blocks1 = (0, _calculateStaticBlocks.default)({
9
+ var blocks1 = (0, _calculateStaticBlocks["default"])({
10
10
  bpPerPx: 1,
11
11
  width: 800,
12
12
  offsetPx: 0,
@@ -19,7 +19,7 @@ describe('block calculation', function () {
19
19
  minimumBlockWidth: 20,
20
20
  interRegionPaddingWidth: 2
21
21
  });
22
- var blocks2 = (0, _calculateStaticBlocks.default)({
22
+ var blocks2 = (0, _calculateStaticBlocks["default"])({
23
23
  bpPerPx: 1,
24
24
  width: 800,
25
25
  offsetPx: 0,
@@ -36,7 +36,7 @@ describe('block calculation', function () {
36
36
  expect(blocks1).toEqual(blocks2);
37
37
  });
38
38
  it('can calculate some blocks 2', function () {
39
- var blocks = (0, _calculateStaticBlocks.default)({
39
+ var blocks = (0, _calculateStaticBlocks["default"])({
40
40
  bpPerPx: 1,
41
41
  width: 800,
42
42
  offsetPx: 30,
@@ -57,7 +57,7 @@ describe('block calculation', function () {
57
57
  expect(blocks).toMatchSnapshot();
58
58
  });
59
59
  it('can calculate some blocks (should be empty because offscreen to the right)', function () {
60
- var blockSet = (0, _calculateStaticBlocks.default)({
60
+ var blockSet = (0, _calculateStaticBlocks["default"])({
61
61
  bpPerPx: 1,
62
62
  width: 800,
63
63
  offsetPx: 2000,
@@ -78,7 +78,7 @@ describe('block calculation', function () {
78
78
  expect(blockSet.getBlocks()).toEqual([]);
79
79
  });
80
80
  it('can calculate some blocks (should be empty because offscreen to the left)', function () {
81
- var blockSet = (0, _calculateStaticBlocks.default)({
81
+ var blockSet = (0, _calculateStaticBlocks["default"])({
82
82
  bpPerPx: 1,
83
83
  width: 800,
84
84
  offsetPx: -2000,
@@ -99,7 +99,7 @@ describe('block calculation', function () {
99
99
  expect(blockSet.getBlocks()).toEqual([]);
100
100
  });
101
101
  it('can calculate some blocks 5', function () {
102
- var blocks = (0, _calculateStaticBlocks.default)({
102
+ var blocks = (0, _calculateStaticBlocks["default"])({
103
103
  bpPerPx: 1,
104
104
  width: 800,
105
105
  offsetPx: 5000,
@@ -120,7 +120,7 @@ describe('block calculation', function () {
120
120
  expect(blocks).toMatchSnapshot();
121
121
  });
122
122
  it('can calculate some blocks 6', function () {
123
- var blockSet = (0, _calculateStaticBlocks.default)({
123
+ var blockSet = (0, _calculateStaticBlocks["default"])({
124
124
  bpPerPx: 1,
125
125
  width: 800,
126
126
  offsetPx: 0,
@@ -142,7 +142,7 @@ describe('block calculation', function () {
142
142
  expect(blockSet.blocks[1].offsetPx).toBe(0);
143
143
  });
144
144
  it('can calculate some blocks 7', function () {
145
- var blocks = (0, _calculateStaticBlocks.default)({
145
+ var blocks = (0, _calculateStaticBlocks["default"])({
146
146
  bpPerPx: 1,
147
147
  width: 800,
148
148
  offsetPx: 801,
@@ -163,7 +163,7 @@ describe('block calculation', function () {
163
163
  expect(blocks).toMatchSnapshot();
164
164
  });
165
165
  it('can calculate some blocks 8', function () {
166
- var blocks = (0, _calculateStaticBlocks.default)({
166
+ var blocks = (0, _calculateStaticBlocks["default"])({
167
167
  bpPerPx: 1,
168
168
  width: 800,
169
169
  offsetPx: 1600,
@@ -184,7 +184,7 @@ describe('block calculation', function () {
184
184
  expect(blocks).toMatchSnapshot();
185
185
  });
186
186
  it('can calculate some blocks 9', function () {
187
- var blockSet = (0, _calculateStaticBlocks.default)({
187
+ var blockSet = (0, _calculateStaticBlocks["default"])({
188
188
  width: 800,
189
189
  offsetPx: 1069,
190
190
  bpPerPx: 2,
@@ -205,7 +205,7 @@ describe('block calculation', function () {
205
205
  expect(blockSet).toMatchSnapshot();
206
206
  });
207
207
  it('can calculate some blocks 10', function () {
208
- var blockSet = (0, _calculateStaticBlocks.default)({
208
+ var blockSet = (0, _calculateStaticBlocks["default"])({
209
209
  width: 800,
210
210
  offsetPx: 0,
211
211
  bpPerPx: 0.05,
@@ -230,7 +230,7 @@ describe('block calculation', function () {
230
230
  });
231
231
  describe('reverse block calculation', function () {
232
232
  test('1', function () {
233
- var blocks = (0, _calculateStaticBlocks.default)({
233
+ var blocks = (0, _calculateStaticBlocks["default"])({
234
234
  bpPerPx: 1,
235
235
  width: 800,
236
236
  offsetPx: 0,
@@ -249,7 +249,7 @@ describe('reverse block calculation', function () {
249
249
  });
250
250
  describe('reversed displayed regions', function () {
251
251
  test('without elided region', function () {
252
- var blocks = (0, _calculateStaticBlocks.default)({
252
+ var blocks = (0, _calculateStaticBlocks["default"])({
253
253
  bpPerPx: 1,
254
254
  width: 800,
255
255
  offsetPx: 0,
@@ -272,7 +272,7 @@ describe('reversed displayed regions', function () {
272
272
  expect(blocks).toMatchSnapshot();
273
273
  });
274
274
  test('with elided region', function () {
275
- var blocks = (0, _calculateStaticBlocks.default)({
275
+ var blocks = (0, _calculateStaticBlocks["default"])({
276
276
  bpPerPx: 1,
277
277
  width: 800,
278
278
  offsetPx: 0,