@jbrowse/core 1.5.3 → 1.5.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (150) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -2
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +113 -100
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +59 -66
  4. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  5. package/BaseFeatureWidget/index.js +1 -1
  6. package/BaseFeatureWidget/index.test.js +3 -3
  7. package/BaseFeatureWidget/types.js +5 -1
  8. package/BaseFeatureWidget/util.js +9 -13
  9. package/CorePlugin.js +19 -31
  10. package/Plugin.js +11 -13
  11. package/PluginLoader.js +33 -38
  12. package/PluginManager.d.ts +5 -5
  13. package/PluginManager.js +55 -60
  14. package/ReExports/index.js +4 -4
  15. package/ReExports/list.js +2 -2
  16. package/ReExports/material-ui-colors.js +20 -20
  17. package/ReExports/modules.js +47 -51
  18. package/TextSearch/BaseResults.js +24 -34
  19. package/TextSearch/BaseResults.test.js +3 -7
  20. package/TextSearch/TextSearchManager.d.ts +1 -1
  21. package/TextSearch/TextSearchManager.js +15 -18
  22. package/assemblyManager/assembly.js +34 -39
  23. package/assemblyManager/assemblyConfigSchema.js +2 -2
  24. package/assemblyManager/assemblyManager.js +16 -20
  25. package/assemblyManager/index.js +3 -3
  26. package/configuration/configurationSchema.js +17 -19
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/util.js +5 -5
  30. package/data_adapters/BaseAdapter.d.ts +4 -4
  31. package/data_adapters/BaseAdapter.js +36 -47
  32. package/data_adapters/BaseAdapter.test.js +24 -30
  33. package/data_adapters/CytobandAdapter.js +16 -22
  34. package/data_adapters/dataAdapterCache.js +9 -9
  35. package/package.json +7 -7
  36. package/pluggableElementTypes/AdapterType.js +22 -29
  37. package/pluggableElementTypes/ConnectionType.js +18 -26
  38. package/pluggableElementTypes/DisplayType.js +17 -25
  39. package/pluggableElementTypes/InternetAccountType.js +14 -22
  40. package/pluggableElementTypes/PluggableElementBase.js +9 -10
  41. package/pluggableElementTypes/RpcMethodType.js +40 -56
  42. package/pluggableElementTypes/RpcMethodType.test.js +17 -23
  43. package/pluggableElementTypes/TextSearchAdapterType.js +15 -23
  44. package/pluggableElementTypes/TrackType.js +15 -25
  45. package/pluggableElementTypes/ViewType.js +15 -25
  46. package/pluggableElementTypes/WidgetType.js +17 -25
  47. package/pluggableElementTypes/index.js +11 -11
  48. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  49. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  50. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  51. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  52. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  53. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  54. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  55. package/pluggableElementTypes/models/index.js +4 -4
  56. package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
  57. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -16
  58. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
  59. package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
  60. package/pluggableElementTypes/renderers/RendererType.js +21 -31
  61. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  62. package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
  63. package/pluggableElementTypes/renderers/index.js +8 -8
  64. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  65. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  66. package/rpc/BaseRpcDriver.d.ts +1 -1
  67. package/rpc/BaseRpcDriver.js +37 -42
  68. package/rpc/BaseRpcDriver.test.js +49 -63
  69. package/rpc/MainThreadRpcDriver.js +22 -32
  70. package/rpc/RpcManager.d.ts +2 -2
  71. package/rpc/RpcManager.js +20 -25
  72. package/rpc/WebWorkerRpcDriver.d.ts +2 -2
  73. package/rpc/WebWorkerRpcDriver.js +29 -40
  74. package/rpc/configSchema.js +2 -2
  75. package/rpc/coreRpcMethods.js +72 -82
  76. package/rpc/remoteAbortSignals.js +3 -3
  77. package/ui/AboutDialog.js +17 -21
  78. package/ui/App.js +38 -42
  79. package/ui/AssemblySelector.js +5 -5
  80. package/ui/Drawer.js +7 -7
  81. package/ui/DrawerWidget.js +33 -37
  82. package/ui/DropDownMenu.js +9 -21
  83. package/ui/EditableTypography.js +19 -30
  84. package/ui/ErrorMessage.js +5 -5
  85. package/ui/FactoryResetDialog.js +8 -8
  86. package/ui/FatalErrorDialog.js +12 -29
  87. package/ui/FatalErrorDialog.test.js +11 -11
  88. package/ui/FileSelector/FileSelector.js +32 -42
  89. package/ui/FileSelector/LocalFileChooser.js +9 -9
  90. package/ui/FileSelector/UrlChooser.js +4 -4
  91. package/ui/FileSelector/index.js +4 -4
  92. package/ui/Icons.js +9 -9
  93. package/ui/Logo.js +19 -19
  94. package/ui/Menu.js +35 -46
  95. package/ui/NewSessionCards.js +19 -29
  96. package/ui/PrerenderedCanvas.js +10 -27
  97. package/ui/ResizeHandle.js +10 -17
  98. package/ui/SanitizedHTML.js +5 -5
  99. package/ui/SanitizedHTML.test.js +4 -4
  100. package/ui/Snackbar.js +12 -16
  101. package/ui/SnackbarModel.js +1 -1
  102. package/ui/Tooltip.js +7 -11
  103. package/ui/ViewContainer.js +20 -30
  104. package/ui/index.js +13 -17
  105. package/ui/theme.js +11 -15
  106. package/util/Base1DViewModel.js +10 -14
  107. package/util/Base1DViewModel.test.js +5 -5
  108. package/util/QuickLRU.js +27 -31
  109. package/util/aborting.js +16 -24
  110. package/util/analytics.js +7 -7
  111. package/util/blockTypes.js +36 -49
  112. package/util/calculateDynamicBlocks.js +4 -4
  113. package/util/calculateDynamicBlocks.test.js +10 -14
  114. package/util/calculateStaticBlocks.js +1 -1
  115. package/util/calculateStaticBlocks.test.js +15 -15
  116. package/util/compositeMap.js +30 -41
  117. package/util/idMaker.js +4 -4
  118. package/util/index.js +35 -48
  119. package/util/index.test.js +7 -11
  120. package/util/io/RemoteFileWithRangeCache.js +29 -41
  121. package/util/io/index.js +6 -6
  122. package/util/jexl.js +8 -5
  123. package/util/jexlStrings.js +2 -2
  124. package/util/jexlStrings.test.js +2 -2
  125. package/util/layouts/BaseLayout.js +5 -1
  126. package/util/layouts/GranularRectLayout.js +28 -34
  127. package/util/layouts/GranularRectLayout.test.js +10 -10
  128. package/util/layouts/MultiLayout.d.ts +1 -1
  129. package/util/layouts/MultiLayout.js +14 -21
  130. package/util/layouts/PrecomputedLayout.js +14 -16
  131. package/util/layouts/PrecomputedMultiLayout.js +18 -22
  132. package/util/layouts/SceneGraph.d.ts +3 -3
  133. package/util/layouts/SceneGraph.js +17 -31
  134. package/util/layouts/index.js +6 -6
  135. package/util/mst-reflection.d.ts +3 -3
  136. package/util/offscreenCanvasPonyfill.js +29 -31
  137. package/util/offscreenCanvasUtils.js +6 -6
  138. package/util/range.test.js +20 -20
  139. package/util/rxjs.js +2 -2
  140. package/util/simpleFeature.js +19 -24
  141. package/util/simpleFeature.test.js +3 -3
  142. package/util/stats.js +7 -11
  143. package/util/stats.test.js +15 -15
  144. package/util/types/index.d.ts +2 -0
  145. package/util/types/index.js +29 -36
  146. package/util/types/mst.js +15 -19
  147. package/util/types/util.js +5 -1
  148. package/util/when.js +6 -6
  149. package/babel.config.d.ts +0 -15
  150. package/babel.config.js +0 -19
@@ -1,19 +1,17 @@
1
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports.default = void 0;
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+ exports["default"] = void 0;
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- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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+ var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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  var _ = require("..");
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@@ -24,19 +22,19 @@ var PrecomputedLayout = /*#__PURE__*/function () {
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  var rectangles = _ref.rectangles,
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  totalHeight = _ref.totalHeight,
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  maxHeightReached = _ref.maxHeightReached;
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- (0, _classCallCheck2.default)(this, PrecomputedLayout);
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- (0, _defineProperty2.default)(this, "rectangles", void 0);
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- (0, _defineProperty2.default)(this, "totalHeight", void 0);
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- (0, _defineProperty2.default)(this, "maxHeightReached", void 0);
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- (0, _defineProperty2.default)(this, "rbush", void 0);
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+ (0, _classCallCheck2["default"])(this, PrecomputedLayout);
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+ this.rectangles = void 0;
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+ this.totalHeight = void 0;
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+ this.maxHeightReached = void 0;
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+ this.rbush = void 0;
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  this.rectangles = new Map(Object.entries(rectangles)); // rectangles is of the form "featureId": [leftPx, topPx, rightPx, bottomPx]
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34
32
  this.totalHeight = totalHeight;
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  this.maxHeightReached = maxHeightReached;
36
- this.rbush = new _rbush.default();
34
+ this.rbush = new _rbush["default"]();
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38
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  for (var _i = 0, _Object$entries = Object.entries(rectangles); _i < _Object$entries.length; _i++) {
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- var _Object$entries$_i = (0, _slicedToArray2.default)(_Object$entries[_i], 2),
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+ var _Object$entries$_i = (0, _slicedToArray2["default"])(_Object$entries[_i], 2),
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  key = _Object$entries$_i[0],
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  layout = _Object$entries$_i[1];
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@@ -50,7 +48,7 @@ var PrecomputedLayout = /*#__PURE__*/function () {
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  }
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  }
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- (0, _createClass2.default)(PrecomputedLayout, [{
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+ (0, _createClass2["default"])(PrecomputedLayout, [{
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  key: "addRect",
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  value: function addRect(id) {
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  var rect = this.rectangles.get(id);
@@ -125,4 +123,4 @@ var PrecomputedLayout = /*#__PURE__*/function () {
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  return PrecomputedLayout;
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  }();
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- exports.default = PrecomputedLayout;
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+ exports["default"] = PrecomputedLayout;
@@ -1,58 +1,54 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports.default = void 0;
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+ exports["default"] = void 0;
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- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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+ var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
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+ var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
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+ var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
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+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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  var _MultiLayout2 = _interopRequireDefault(require("./MultiLayout"));
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  var _PrecomputedLayout = _interopRequireDefault(require("./PrecomputedLayout"));
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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-
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- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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-
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- var ThrowingLayout = function ThrowingLayout() {
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- (0, _classCallCheck2.default)(this, ThrowingLayout);
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+ var ThrowingLayout = /*#__PURE__*/(0, _createClass2["default"])(function ThrowingLayout() {
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+ (0, _classCallCheck2["default"])(this, ThrowingLayout);
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  throw new Error('invalid layout name');
31
- };
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+ });
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  var PrecomputedMultiLayout = /*#__PURE__*/function (_MultiLayout) {
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- (0, _inherits2.default)(PrecomputedMultiLayout, _MultiLayout);
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+ (0, _inherits2["default"])(PrecomputedMultiLayout, _MultiLayout);
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- var _super = _createSuper(PrecomputedMultiLayout);
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+ var _super = (0, _createSuper2["default"])(PrecomputedMultiLayout);
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  function PrecomputedMultiLayout(json) {
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  var _this;
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- (0, _classCallCheck2.default)(this, PrecomputedMultiLayout);
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+ (0, _classCallCheck2["default"])(this, PrecomputedMultiLayout);
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  // use ThrowingLayout because there is not supposed to be any creation
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  // of new layouts in a precomputed layout
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  _this = _super.call(this, ThrowingLayout);
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  Object.entries(json).forEach(function (_ref) {
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- var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
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+ var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
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  layoutName = _ref2[0],
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  sublayoutJson = _ref2[1];
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- _this.subLayouts.set(layoutName, new _PrecomputedLayout.default(sublayoutJson));
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+ _this.subLayouts.set(layoutName, new _PrecomputedLayout["default"](sublayoutJson));
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  });
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  return _this;
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  }
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- return PrecomputedMultiLayout;
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- }(_MultiLayout2.default);
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+ return (0, _createClass2["default"])(PrecomputedMultiLayout);
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+ }(_MultiLayout2["default"]);
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- exports.default = PrecomputedMultiLayout;
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+ exports["default"] = PrecomputedMultiLayout;
@@ -8,19 +8,19 @@ interface AbsoluteCache {
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  height?: number;
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  }
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  export default class SceneGraph {
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- private name;
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+ name: string;
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  left: number;
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  top: number;
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  width: number;
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  height: number;
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- data?: Record<string, any>;
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+ data?: Record<string, any> | undefined;
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  private children;
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  private absoluteCache;
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  parent?: SceneGraph;
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  /**
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  * note: all coordinates are inter-base or inter-pixel coordinates
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  */
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- constructor(name: string, left: number, top: number, width: number, height: number, data?: Record<string, any>);
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+ constructor(name: string, left: number, top: number, width: number, height: number, data?: Record<string, any> | undefined);
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  addChild(nameOrSceneGraph: string | SceneGraph, left: number, top: number, width: number, height: number, data?: Record<string, any>): SceneGraph;
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  getSubRecord(name: string): SceneGraph | undefined;
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  /**
@@ -1,62 +1,48 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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- exports.default = void 0;
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+ exports["default"] = void 0;
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
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-
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- function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
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-
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- function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
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-
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  var SceneGraph = /*#__PURE__*/function () {
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- // eslint-disable-next-line @typescript-eslint/no-explicit-any
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  /**
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  * note: all coordinates are inter-base or inter-pixel coordinates
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  */
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  function SceneGraph(name, left, top, width, height, // eslint-disable-next-line @typescript-eslint/no-explicit-any
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  data) {
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- (0, _classCallCheck2.default)(this, SceneGraph);
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- (0, _defineProperty2.default)(this, "name", void 0);
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- (0, _defineProperty2.default)(this, "left", void 0);
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- (0, _defineProperty2.default)(this, "top", void 0);
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- (0, _defineProperty2.default)(this, "width", void 0);
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- (0, _defineProperty2.default)(this, "height", void 0);
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- (0, _defineProperty2.default)(this, "data", void 0);
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- (0, _defineProperty2.default)(this, "children", void 0);
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- (0, _defineProperty2.default)(this, "absoluteCache", void 0);
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- (0, _defineProperty2.default)(this, "parent", void 0);
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-
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- if (_.inDevelopment && (typeof name !== 'string' || typeof left !== 'number' || Number.isNaN(left) || typeof top !== 'number' || Number.isNaN(top) || typeof width !== 'number' || Number.isNaN(width) || typeof height !== 'number' || Number.isNaN(height))) {
44
- throw new TypeError('invalid SceneGraph arguments');
45
- }
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24
+ (0, _classCallCheck2["default"])(this, SceneGraph);
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25
  this.name = name;
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  this.left = left;
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  this.width = width;
51
29
  this.height = height;
52
30
  this.data = data;
31
+ this.children = void 0;
32
+ this.absoluteCache = void 0;
33
+ this.parent = void 0;
34
+
35
+ if (_.inDevelopment && (typeof name !== 'string' || typeof left !== 'number' || Number.isNaN(left) || typeof top !== 'number' || Number.isNaN(top) || typeof width !== 'number' || Number.isNaN(width) || typeof height !== 'number' || Number.isNaN(height))) {
36
+ throw new TypeError('invalid SceneGraph arguments');
37
+ }
38
+
53
39
  this.children = new Map();
54
40
  this.absoluteCache = {
55
41
  dirty: true
56
42
  };
57
43
  }
58
44
 
59
- (0, _createClass2.default)(SceneGraph, [{
45
+ (0, _createClass2["default"])(SceneGraph, [{
60
46
  key: "addChild",
61
47
  value: function addChild(nameOrSceneGraph, left, top, width, height, // eslint-disable-next-line @typescript-eslint/no-explicit-any
62
48
  data) {
@@ -163,7 +149,7 @@ var SceneGraph = /*#__PURE__*/function () {
163
149
  }, {
164
150
  key: "walkChildren",
165
151
  value: function walkChildren(callback) {
166
- var _iterator = _createForOfIteratorHelper(this.children.values()),
152
+ var _iterator = (0, _createForOfIteratorHelper2["default"])(this.children.values()),
167
153
  _step;
168
154
 
169
155
  try {
@@ -224,4 +210,4 @@ var SceneGraph = /*#__PURE__*/function () {
224
210
  return SceneGraph;
225
211
  }();
226
212
 
227
- exports.default = SceneGraph;
213
+ exports["default"] = SceneGraph;
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -15,31 +15,31 @@ var _exportNames = {
15
15
  Object.defineProperty(exports, "GranularRectLayout", {
16
16
  enumerable: true,
17
17
  get: function get() {
18
- return _GranularRectLayout.default;
18
+ return _GranularRectLayout["default"];
19
19
  }
20
20
  });
21
21
  Object.defineProperty(exports, "MultiLayout", {
22
22
  enumerable: true,
23
23
  get: function get() {
24
- return _MultiLayout.default;
24
+ return _MultiLayout["default"];
25
25
  }
26
26
  });
27
27
  Object.defineProperty(exports, "PrecomputedLayout", {
28
28
  enumerable: true,
29
29
  get: function get() {
30
- return _PrecomputedLayout.default;
30
+ return _PrecomputedLayout["default"];
31
31
  }
32
32
  });
33
33
  Object.defineProperty(exports, "PrecomputedMultiLayout", {
34
34
  enumerable: true,
35
35
  get: function get() {
36
- return _PrecomputedMultiLayout.default;
36
+ return _PrecomputedMultiLayout["default"];
37
37
  }
38
38
  });
39
39
  Object.defineProperty(exports, "SceneGraph", {
40
40
  enumerable: true,
41
41
  get: function get() {
42
- return _SceneGraph.default;
42
+ return _SceneGraph["default"];
43
43
  }
44
44
  });
45
45
 
@@ -4,13 +4,13 @@
4
4
  * @param {IModelType} type
5
5
  * @returns {IModelType}
6
6
  */
7
- export function getSubType(type: any): any;
7
+ export function getSubType(type: IModelType): IModelType;
8
8
  /**
9
9
  * get the array of
10
10
  * @param {MST Union Type obj} unionType
11
11
  * @returns {Array<IModelType>}
12
12
  */
13
- export function getUnionSubTypes(unionType: any): Array<any>;
13
+ export function getUnionSubTypes(unionType: any): Array<IModelType>;
14
14
  /**
15
15
  * get the type of one of the properties of the given MST model type
16
16
  *
@@ -18,7 +18,7 @@ export function getUnionSubTypes(unionType: any): Array<any>;
18
18
  * @param {string} propertyName
19
19
  * @returns {IModelType}
20
20
  */
21
- export function getPropertyType(type: any, propertyName: string): any;
21
+ export function getPropertyType(type: IModelType, propertyName: string): IModelType;
22
22
  /**
23
23
  * get the base type from inside an MST optional type
24
24
  * @param {*} type
@@ -1,27 +1,25 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.createImageBitmap = exports.createCanvas = exports.PonyfillOffscreenContext = exports.PonyfillOffscreenCanvas = exports.ImageBitmapType = void 0;
9
9
 
10
- var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
10
+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
11
11
 
12
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
12
+ var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
13
13
 
14
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
14
+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
15
15
 
16
- var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
16
+ var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
17
17
 
18
- var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
18
+ var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
19
19
 
20
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
20
+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
21
21
 
22
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
23
-
24
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
22
+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
25
23
 
26
24
  var _react = _interopRequireDefault(require("react"));
27
25
 
@@ -41,12 +39,12 @@ var ImageBitmapType;
41
39
  exports.ImageBitmapType = ImageBitmapType;
42
40
  var weHave = {
43
41
  realOffscreenCanvas: typeof OffscreenCanvas === 'function',
44
- node: _detectNode.default
42
+ node: _detectNode["default"]
45
43
  };
46
44
 
47
45
  var PonyfillOffscreenContext = /*#__PURE__*/function () {
48
46
  function PonyfillOffscreenContext(width, height) {
49
- (0, _classCallCheck2.default)(this, PonyfillOffscreenContext);
47
+ (0, _classCallCheck2["default"])(this, PonyfillOffscreenContext);
50
48
  this.width = width;
51
49
  this.height = height;
52
50
  this.commands = [];
@@ -54,7 +52,7 @@ var PonyfillOffscreenContext = /*#__PURE__*/function () {
54
52
  } // setters (no getters working)
55
53
 
56
54
 
57
- (0, _createClass2.default)(PonyfillOffscreenContext, [{
55
+ (0, _createClass2["default"])(PonyfillOffscreenContext, [{
58
56
  key: "strokeStyle",
59
57
  set: function set(style) {
60
58
  if (style !== this.currentStrokeStyle) {
@@ -482,7 +480,7 @@ var PonyfillOffscreenContext = /*#__PURE__*/function () {
482
480
  exports.PonyfillOffscreenContext = PonyfillOffscreenContext;
483
481
 
484
482
  function splitColor(color) {
485
- var fill = (0, _color.default)(color);
483
+ var fill = (0, _color["default"])(color);
486
484
  return {
487
485
  hex: fill.hex(),
488
486
  opacity: fill.alpha()
@@ -563,12 +561,12 @@ function parseFont(font) {
563
561
 
564
562
  var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
565
563
  function PonyfillOffscreenCanvas(width, height) {
566
- (0, _classCallCheck2.default)(this, PonyfillOffscreenCanvas);
564
+ (0, _classCallCheck2["default"])(this, PonyfillOffscreenCanvas);
567
565
  this.width = width;
568
566
  this.height = height;
569
567
  }
570
568
 
571
- (0, _createClass2.default)(PonyfillOffscreenCanvas, [{
569
+ (0, _createClass2["default"])(PonyfillOffscreenCanvas, [{
572
570
  key: "getContext",
573
571
  value: function getContext(type) {
574
572
  if (type !== '2d') {
@@ -618,7 +616,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
618
616
  }
619
617
 
620
618
  if (command.type === 'fillRect') {
621
- var _command$args = (0, _slicedToArray2.default)(command.args, 4),
619
+ var _command$args = (0, _slicedToArray2["default"])(command.args, 4),
622
620
  x = _command$args[0],
623
621
  y = _command$args[1],
624
622
  w = _command$args[2],
@@ -630,7 +628,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
630
628
 
631
629
  var ny = Math.min(y, y + h);
632
630
  var nh = Math.abs(h);
633
- nodes.push( /*#__PURE__*/_react.default.createElement("rect", {
631
+ nodes.push( /*#__PURE__*/_react["default"].createElement("rect", {
634
632
  key: index,
635
633
  fill: hex,
636
634
  fillOpacity: opacity !== 1 ? opacity : undefined,
@@ -642,7 +640,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
642
640
  }
643
641
 
644
642
  if (command.type === 'fillText') {
645
- var _command$args2 = (0, _slicedToArray2.default)(command.args, 3),
643
+ var _command$args2 = (0, _slicedToArray2["default"])(command.args, 3),
646
644
  text = _command$args2[0],
647
645
  _x = _command$args2[1],
648
646
  _y = _command$args2[2];
@@ -651,7 +649,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
651
649
  _hex = _splitColor2.hex,
652
650
  _opacity = _splitColor2.opacity;
653
651
 
654
- nodes.push( /*#__PURE__*/_react.default.createElement("text", (0, _extends2.default)({
652
+ nodes.push( /*#__PURE__*/_react["default"].createElement("text", Object.assign({
655
653
  key: index,
656
654
  fill: _hex,
657
655
  fillOpacity: _opacity !== 1 ? _opacity : undefined,
@@ -679,12 +677,12 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
679
677
  if (command.type === 'fill') {
680
678
  var _Path;
681
679
 
682
- var path = (_Path = (0, _svgPathGenerator.default)()).moveTo.apply(_Path, (0, _toConsumableArray2.default)(currentPath[0]));
680
+ var path = (_Path = (0, _svgPathGenerator["default"])()).moveTo.apply(_Path, (0, _toConsumableArray2["default"])(currentPath[0]));
683
681
 
684
682
  for (var i = 1; i < currentPath.length; i++) {
685
683
  var _path;
686
684
 
687
- path = (_path = path).lineTo.apply(_path, (0, _toConsumableArray2.default)(currentPath[i]));
685
+ path = (_path = path).lineTo.apply(_path, (0, _toConsumableArray2["default"])(currentPath[i]));
688
686
  }
689
687
 
690
688
  path.end();
@@ -693,7 +691,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
693
691
  _hex2 = _splitColor3.hex,
694
692
  _opacity2 = _splitColor3.opacity;
695
693
 
696
- nodes.push( /*#__PURE__*/_react.default.createElement("path", {
694
+ nodes.push( /*#__PURE__*/_react["default"].createElement("path", {
697
695
  key: index,
698
696
  fill: _hex2,
699
697
  d: path,
@@ -704,12 +702,12 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
704
702
  if (command.type === 'stroke') {
705
703
  var _Path2;
706
704
 
707
- var _path2 = (_Path2 = (0, _svgPathGenerator.default)()).moveTo.apply(_Path2, (0, _toConsumableArray2.default)(currentPath[0]));
705
+ var _path2 = (_Path2 = (0, _svgPathGenerator["default"])()).moveTo.apply(_Path2, (0, _toConsumableArray2["default"])(currentPath[0]));
708
706
 
709
707
  for (var _i = 1; _i < currentPath.length; _i++) {
710
708
  var _path3;
711
709
 
712
- _path2 = (_path3 = _path2).lineTo.apply(_path3, (0, _toConsumableArray2.default)(currentPath[_i]));
710
+ _path2 = (_path3 = _path2).lineTo.apply(_path3, (0, _toConsumableArray2["default"])(currentPath[_i]));
713
711
  }
714
712
 
715
713
  _path2.end();
@@ -718,7 +716,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
718
716
  _hex3 = _splitColor4.hex,
719
717
  _opacity3 = _splitColor4.opacity;
720
718
 
721
- nodes.push( /*#__PURE__*/_react.default.createElement("path", {
719
+ nodes.push( /*#__PURE__*/_react["default"].createElement("path", {
722
720
  key: index,
723
721
  fill: "none",
724
722
  stroke: _hex3,
@@ -731,9 +729,9 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
731
729
  rotation = command.args[0] * 180 / Math.PI;
732
730
  }
733
731
  });
734
- return rotation ? /*#__PURE__*/_react.default.createElement("g", {
732
+ return rotation ? /*#__PURE__*/_react["default"].createElement("g", {
735
733
  transform: "rotate(".concat(rotation, ")")
736
- }, [].concat(nodes)) : /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, [].concat(nodes));
734
+ }, [].concat(nodes)) : /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, [].concat(nodes));
737
735
  }
738
736
  }]);
739
737
  return PonyfillOffscreenCanvas;
@@ -757,11 +755,11 @@ if (weHave.realOffscreenCanvas) {
757
755
  exports.createCanvas = createCanvas = nodeCreateCanvas;
758
756
 
759
757
  exports.createImageBitmap = createImageBitmap = /*#__PURE__*/function () {
760
- var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(canvas) {
758
+ var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(canvas) {
761
759
  var dataUri,
762
760
  img,
763
761
  _args = arguments;
764
- return _regenerator.default.wrap(function _callee$(_context) {
762
+ return _index["default"].wrap(function _callee$(_context) {
765
763
  while (1) {
766
764
  switch (_context.prev = _context.next) {
767
765
  case 0:
@@ -807,5 +805,5 @@ if (weHave.realOffscreenCanvas) {
807
805
  return canvas.context;
808
806
  };
809
807
 
810
- exports.ImageBitmapType = ImageBitmapType = (0, _typeof2.default)('StringArray');
808
+ exports.ImageBitmapType = ImageBitmapType = (0, _typeof2["default"])('StringArray');
811
809
  }
@@ -1,15 +1,15 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.renderToAbstractCanvas = renderToAbstractCanvas;
9
9
 
10
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
10
+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
13
13
 
14
14
  var _react = _interopRequireDefault(require("react"));
15
15
 
@@ -22,10 +22,10 @@ function renderToAbstractCanvas(_x, _x2, _x3, _x4) {
22
22
  }
23
23
 
24
24
  function _renderToAbstractCanvas() {
25
- _renderToAbstractCanvas = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(width, height, opts, cb) {
25
+ _renderToAbstractCanvas = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(width, height, opts, cb) {
26
26
  var exportSVG, _opts$highResolutionS, highResolutionScaling, fakeCanvas, fakeCtx, scale, _canvas, _ctx, canvas, ctx;
27
27
 
28
- return _regenerator.default.wrap(function _callee$(_context) {
28
+ return _index["default"].wrap(function _callee$(_context) {
29
29
  while (1) {
30
30
  switch (_context.prev = _context.next) {
31
31
  case 0:
@@ -62,7 +62,7 @@ function _renderToAbstractCanvas() {
62
62
  return cb(_ctx);
63
63
 
64
64
  case 14:
65
- _context.t0 = _react.default;
65
+ _context.t0 = _react["default"];
66
66
  _context.t1 = width;
67
67
  _context.t2 = height;
68
68