@jbrowse/core 1.5.3 → 1.5.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (150) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -2
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +113 -100
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +59 -66
  4. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  5. package/BaseFeatureWidget/index.js +1 -1
  6. package/BaseFeatureWidget/index.test.js +3 -3
  7. package/BaseFeatureWidget/types.js +5 -1
  8. package/BaseFeatureWidget/util.js +9 -13
  9. package/CorePlugin.js +19 -31
  10. package/Plugin.js +11 -13
  11. package/PluginLoader.js +33 -38
  12. package/PluginManager.d.ts +5 -5
  13. package/PluginManager.js +55 -60
  14. package/ReExports/index.js +4 -4
  15. package/ReExports/list.js +2 -2
  16. package/ReExports/material-ui-colors.js +20 -20
  17. package/ReExports/modules.js +47 -51
  18. package/TextSearch/BaseResults.js +24 -34
  19. package/TextSearch/BaseResults.test.js +3 -7
  20. package/TextSearch/TextSearchManager.d.ts +1 -1
  21. package/TextSearch/TextSearchManager.js +15 -18
  22. package/assemblyManager/assembly.js +34 -39
  23. package/assemblyManager/assemblyConfigSchema.js +2 -2
  24. package/assemblyManager/assemblyManager.js +16 -20
  25. package/assemblyManager/index.js +3 -3
  26. package/configuration/configurationSchema.js +17 -19
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/util.js +5 -5
  30. package/data_adapters/BaseAdapter.d.ts +4 -4
  31. package/data_adapters/BaseAdapter.js +36 -47
  32. package/data_adapters/BaseAdapter.test.js +24 -30
  33. package/data_adapters/CytobandAdapter.js +16 -22
  34. package/data_adapters/dataAdapterCache.js +9 -9
  35. package/package.json +7 -7
  36. package/pluggableElementTypes/AdapterType.js +22 -29
  37. package/pluggableElementTypes/ConnectionType.js +18 -26
  38. package/pluggableElementTypes/DisplayType.js +17 -25
  39. package/pluggableElementTypes/InternetAccountType.js +14 -22
  40. package/pluggableElementTypes/PluggableElementBase.js +9 -10
  41. package/pluggableElementTypes/RpcMethodType.js +40 -56
  42. package/pluggableElementTypes/RpcMethodType.test.js +17 -23
  43. package/pluggableElementTypes/TextSearchAdapterType.js +15 -23
  44. package/pluggableElementTypes/TrackType.js +15 -25
  45. package/pluggableElementTypes/ViewType.js +15 -25
  46. package/pluggableElementTypes/WidgetType.js +17 -25
  47. package/pluggableElementTypes/index.js +11 -11
  48. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  49. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  50. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  51. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  52. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  53. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  54. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  55. package/pluggableElementTypes/models/index.js +4 -4
  56. package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
  57. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -16
  58. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
  59. package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
  60. package/pluggableElementTypes/renderers/RendererType.js +21 -31
  61. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  62. package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
  63. package/pluggableElementTypes/renderers/index.js +8 -8
  64. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  65. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  66. package/rpc/BaseRpcDriver.d.ts +1 -1
  67. package/rpc/BaseRpcDriver.js +37 -42
  68. package/rpc/BaseRpcDriver.test.js +49 -63
  69. package/rpc/MainThreadRpcDriver.js +22 -32
  70. package/rpc/RpcManager.d.ts +2 -2
  71. package/rpc/RpcManager.js +20 -25
  72. package/rpc/WebWorkerRpcDriver.d.ts +2 -2
  73. package/rpc/WebWorkerRpcDriver.js +29 -40
  74. package/rpc/configSchema.js +2 -2
  75. package/rpc/coreRpcMethods.js +72 -82
  76. package/rpc/remoteAbortSignals.js +3 -3
  77. package/ui/AboutDialog.js +17 -21
  78. package/ui/App.js +38 -42
  79. package/ui/AssemblySelector.js +5 -5
  80. package/ui/Drawer.js +7 -7
  81. package/ui/DrawerWidget.js +33 -37
  82. package/ui/DropDownMenu.js +9 -21
  83. package/ui/EditableTypography.js +19 -30
  84. package/ui/ErrorMessage.js +5 -5
  85. package/ui/FactoryResetDialog.js +8 -8
  86. package/ui/FatalErrorDialog.js +12 -29
  87. package/ui/FatalErrorDialog.test.js +11 -11
  88. package/ui/FileSelector/FileSelector.js +32 -42
  89. package/ui/FileSelector/LocalFileChooser.js +9 -9
  90. package/ui/FileSelector/UrlChooser.js +4 -4
  91. package/ui/FileSelector/index.js +4 -4
  92. package/ui/Icons.js +9 -9
  93. package/ui/Logo.js +19 -19
  94. package/ui/Menu.js +35 -46
  95. package/ui/NewSessionCards.js +19 -29
  96. package/ui/PrerenderedCanvas.js +10 -27
  97. package/ui/ResizeHandle.js +10 -17
  98. package/ui/SanitizedHTML.js +5 -5
  99. package/ui/SanitizedHTML.test.js +4 -4
  100. package/ui/Snackbar.js +12 -16
  101. package/ui/SnackbarModel.js +1 -1
  102. package/ui/Tooltip.js +7 -11
  103. package/ui/ViewContainer.js +20 -30
  104. package/ui/index.js +13 -17
  105. package/ui/theme.js +11 -15
  106. package/util/Base1DViewModel.js +10 -14
  107. package/util/Base1DViewModel.test.js +5 -5
  108. package/util/QuickLRU.js +27 -31
  109. package/util/aborting.js +16 -24
  110. package/util/analytics.js +7 -7
  111. package/util/blockTypes.js +36 -49
  112. package/util/calculateDynamicBlocks.js +4 -4
  113. package/util/calculateDynamicBlocks.test.js +10 -14
  114. package/util/calculateStaticBlocks.js +1 -1
  115. package/util/calculateStaticBlocks.test.js +15 -15
  116. package/util/compositeMap.js +30 -41
  117. package/util/idMaker.js +4 -4
  118. package/util/index.js +35 -48
  119. package/util/index.test.js +7 -11
  120. package/util/io/RemoteFileWithRangeCache.js +29 -41
  121. package/util/io/index.js +6 -6
  122. package/util/jexl.js +8 -5
  123. package/util/jexlStrings.js +2 -2
  124. package/util/jexlStrings.test.js +2 -2
  125. package/util/layouts/BaseLayout.js +5 -1
  126. package/util/layouts/GranularRectLayout.js +28 -34
  127. package/util/layouts/GranularRectLayout.test.js +10 -10
  128. package/util/layouts/MultiLayout.d.ts +1 -1
  129. package/util/layouts/MultiLayout.js +14 -21
  130. package/util/layouts/PrecomputedLayout.js +14 -16
  131. package/util/layouts/PrecomputedMultiLayout.js +18 -22
  132. package/util/layouts/SceneGraph.d.ts +3 -3
  133. package/util/layouts/SceneGraph.js +17 -31
  134. package/util/layouts/index.js +6 -6
  135. package/util/mst-reflection.d.ts +3 -3
  136. package/util/offscreenCanvasPonyfill.js +29 -31
  137. package/util/offscreenCanvasUtils.js +6 -6
  138. package/util/range.test.js +20 -20
  139. package/util/rxjs.js +2 -2
  140. package/util/simpleFeature.js +19 -24
  141. package/util/simpleFeature.test.js +3 -3
  142. package/util/stats.js +7 -11
  143. package/util/stats.test.js +15 -15
  144. package/util/types/index.d.ts +2 -0
  145. package/util/types/index.js +29 -36
  146. package/util/types/mst.js +15 -19
  147. package/util/types/util.js +5 -1
  148. package/util/when.js +6 -6
  149. package/babel.config.d.ts +0 -15
  150. package/babel.config.js +0 -19
@@ -1,17 +1,15 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports.default = void 0;
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+ exports["default"] = void 0;
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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  var _jexlStrings = require("../../../util/jexlStrings");
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@@ -19,8 +17,8 @@ var SerializableFilterChain = /*#__PURE__*/function () {
19
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  function SerializableFilterChain(_ref) {
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  var _ref$filters = _ref.filters,
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  filters = _ref$filters === void 0 ? [] : _ref$filters;
22
- (0, _classCallCheck2.default)(this, SerializableFilterChain);
23
- (0, _defineProperty2.default)(this, "filterChain", void 0);
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+ (0, _classCallCheck2["default"])(this, SerializableFilterChain);
21
+ this.filterChain = void 0;
24
22
  this.filterChain = filters.map(function (inputFilter) {
25
23
  if (typeof inputFilter === 'string') {
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  var expr = (0, _jexlStrings.stringToJexlExpression)(inputFilter);
@@ -35,7 +33,7 @@ var SerializableFilterChain = /*#__PURE__*/function () {
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  } // eslint-disable-next-line @typescript-eslint/no-explicit-any
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38
- (0, _createClass2.default)(SerializableFilterChain, [{
36
+ (0, _createClass2["default"])(SerializableFilterChain, [{
39
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  key: "passes",
40
38
  value: function passes() {
41
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  for (var i = 0; i < this.filterChain.length; i += 1) {
@@ -67,4 +65,4 @@ var SerializableFilterChain = /*#__PURE__*/function () {
67
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  return SerializableFilterChain;
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  }();
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- exports.default = SerializableFilterChain;
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+ exports["default"] = SerializableFilterChain;
@@ -1,11 +1,11 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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5
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  var _serializableFilterChain = _interopRequireDefault(require("./serializableFilterChain"));
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7
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  test('one', function () {
8
- var c = new _serializableFilterChain.default({
8
+ var c = new _serializableFilterChain["default"]({
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  filters: ["jexl:feature.y == 2"]
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  });
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  expect(c.passes({
@@ -17,8 +17,8 @@ export interface RpcDriverConstructorArgs {
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  }
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  export declare function watchWorker(worker: WorkerHandle, pingTime: number, rpcDriverClassName: string): Promise<unknown>;
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  declare class LazyWorker {
20
- worker?: WorkerHandle;
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  driver: BaseRpcDriver;
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+ worker?: WorkerHandle;
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  constructor(driver: BaseRpcDriver);
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  getWorker(pluginManager: PluginManager, rpcDriverClassName: string): WorkerHandle;
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  }
@@ -1,28 +1,28 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports.default = void 0;
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+ exports["default"] = void 0;
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  exports.watchWorker = watchWorker;
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- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
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- var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
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+ var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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+ var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
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- var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
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+ var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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  var _mobxStateTree = require("mobx-state-tree");
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@@ -30,10 +30,6 @@ var _util = require("../util");
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  var _remoteAbortSignals = require("./remoteAbortSignals");
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- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
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-
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
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-
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  function isClonable(thing) {
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  return false;
@@ -53,8 +49,8 @@ function watchWorker(_x, _x2, _x3) {
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  }
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  function _watchWorker() {
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- _watchWorker = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(worker, pingTime, rpcDriverClassName) {
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- return _regenerator.default.wrap(function _callee3$(_context3) {
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+ _watchWorker = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3(worker, pingTime, rpcDriverClassName) {
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+ return _index["default"].wrap(function _callee3$(_context3) {
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  while (1) {
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  case 2:
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  return _context3.abrupt("return", new Promise(function (_resolve, reject) {
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  function delay() {
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- setTimeout( /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
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- return _regenerator.default.wrap(function _callee2$(_context2) {
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+ setTimeout( /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
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+ return _index["default"].wrap(function _callee2$(_context2) {
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@@ -124,20 +120,19 @@ function detectHardwareConcurrency() {
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  function LazyWorker(driver) {
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- (0, _defineProperty2.default)(this, "worker", void 0);
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- (0, _defineProperty2.default)(this, "driver", void 0);
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+ (0, _classCallCheck2["default"])(this, LazyWorker);
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+ this.worker = void 0;
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  }
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133
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+ (0, _createClass2["default"])(LazyWorker, [{
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- watchWorker(worker, this.driver.maxPingTime, rpcDriverClassName).catch(function (error) {
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+ watchWorker(worker, this.driver.maxPingTime, rpcDriverClassName)["catch"](function (error) {
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@@ -159,20 +154,20 @@ var LazyWorker = /*#__PURE__*/function () {
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  function BaseRpcDriver(args) {
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- (0, _classCallCheck2.default)(this, BaseRpcDriver);
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- (0, _defineProperty2.default)(this, "name", void 0);
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- (0, _defineProperty2.default)(this, "lastWorkerAssignment", -1);
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- (0, _defineProperty2.default)(this, "workerAssignments", new Map());
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- (0, _defineProperty2.default)(this, "workerCount", 0);
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- (0, _defineProperty2.default)(this, "workerPool", void 0);
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- (0, _defineProperty2.default)(this, "maxPingTime", 30000);
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- (0, _defineProperty2.default)(this, "workerCheckFrequency", 5000);
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- (0, _defineProperty2.default)(this, "config", void 0);
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+ (0, _classCallCheck2["default"])(this, BaseRpcDriver);
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+ this.name = void 0;
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+ this.lastWorkerAssignment = -1;
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+ this.workerAssignments = new Map();
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+ this.workerCount = 0;
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+ this.workerPool = void 0;
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+ this.maxPingTime = 30000;
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+ this.workerCheckFrequency = 5000;
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+ this.config = void 0;
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  this.config = args.config;
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  } // filter the given object and just remove any non-clonable things from it
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174
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+ (0, _createClass2["default"])(BaseRpcDriver, [{
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  key: "filterArgs",
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  value: function filterArgs(thing, pluginManager, sessionId) {
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  var _this2 = this;
@@ -183,7 +178,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
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  });
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  }
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186
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+ if ((0, _typeof2["default"])(thing) === 'object' && thing !== null) {
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  // AbortSignals are specially handled
188
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  if (thing instanceof AbortSignal) {
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@@ -202,7 +197,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
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  return (0, _util.objectFromEntries)(Object.entries(thing).filter(function (e) {
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  return isClonable(e[1]);
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  }).map(function (_ref) {
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- var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
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+ var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
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  k = _ref2[0],
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  v = _ref2[1];
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@@ -230,7 +225,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
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  var hardwareConcurrency = detectHardwareConcurrency();
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  var workerCount = this.workerCount || Math.max(1, Math.ceil((hardwareConcurrency - 2) / 3));
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- return (0, _toConsumableArray2.default)(new Array(workerCount)).map(function () {
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+ return (0, _toConsumableArray2["default"])(new Array(workerCount)).map(function () {
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@@ -270,7 +265,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
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  }, {
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  key: "call",
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  value: function () {
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- var _call = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(pluginManager, sessionId, functionName, args) {
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+ var _call = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(pluginManager, sessionId, functionName, args) {
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  var _this4 = this;
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271
  var options,
@@ -284,7 +279,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
284
279
  killedP,
285
280
  resultP,
286
281
  _args = arguments;
287
- return _regenerator.default.wrap(function _callee$(_context) {
282
+ return _index["default"].wrap(function _callee$(_context) {
288
283
  while (1) {
289
284
  switch (_context.prev = _context.next) {
290
285
  case 0:
@@ -308,12 +303,12 @@ var BaseRpcDriver = /*#__PURE__*/function () {
308
303
  serializedArgs = _context.sent;
309
304
  filteredAndSerializedArgs = this.filterArgs(serializedArgs, pluginManager, sessionId); // now actually call the worker
310
305
 
311
- callP = worker.call(functionName, filteredAndSerializedArgs, _objectSpread({
306
+ callP = worker.call(functionName, filteredAndSerializedArgs, (0, _objectSpread2["default"])({
312
307
  timeout: 5 * 60 * 1000,
313
308
  // 5 minutes
314
309
  statusCallback: args.statusCallback,
315
310
  rpcDriverClassName: this.name
316
- }, options)).finally(function () {
311
+ }, options))["finally"](function () {
317
312
  done = true;
318
313
  }); // check every 5 seconds to see if the worker has been killed, and
319
314
  // reject the killedP promise if it has
@@ -327,7 +322,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
327
322
  resolve(true);
328
323
  }
329
324
  }, _this4.workerCheckFrequency);
330
- }).finally(function () {
325
+ })["finally"](function () {
331
326
  clearInterval(killedCheckInterval);
332
327
  }); // the result is a race between the actual result promise, and the "killed"
333
328
  // promise. the killed promise will only actually win if the worker was
@@ -354,4 +349,4 @@ var BaseRpcDriver = /*#__PURE__*/function () {
354
349
  return BaseRpcDriver;
355
350
  }();
356
351
 
357
- exports.default = BaseRpcDriver;
352
+ exports["default"] = BaseRpcDriver;
@@ -1,31 +1,25 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
4
4
 
5
- var _typeof = require("@babel/runtime/helpers/typeof");
5
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
6
6
 
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
10
  exports.MockRendererTimeout = exports.MockRendererShort = void 0;
11
11
 
12
- var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
12
+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
13
13
 
14
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
14
+ var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
15
15
 
16
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
16
+ var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
17
17
 
18
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
18
+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
19
19
 
20
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
20
+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
21
21
 
22
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
23
-
24
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
25
-
26
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
27
-
28
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
22
+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
29
23
 
30
24
  var _PluginManager = _interopRequireDefault(require("../PluginManager"));
31
25
 
@@ -37,14 +31,6 @@ var _RpcMethodType3 = _interopRequireDefault(require("../pluggableElementTypes/R
37
31
 
38
32
  var _configuration = require("../configuration");
39
33
 
40
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
41
-
42
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
43
-
44
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
45
-
46
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
47
-
48
34
  function timeout(ms) {
49
35
  return new Promise(function (resolve) {
50
36
  setTimeout(function () {
@@ -55,23 +41,23 @@ function timeout(ms) {
55
41
 
56
42
  var MockWorkerHandle = /*#__PURE__*/function () {
57
43
  function MockWorkerHandle() {
58
- (0, _classCallCheck2.default)(this, MockWorkerHandle);
59
- (0, _defineProperty2.default)(this, "busy", false);
44
+ (0, _classCallCheck2["default"])(this, MockWorkerHandle);
45
+ this.busy = false;
60
46
  }
61
47
 
62
- (0, _createClass2.default)(MockWorkerHandle, [{
48
+ (0, _createClass2["default"])(MockWorkerHandle, [{
63
49
  key: "destroy",
64
50
  value: function destroy() {}
65
51
  }, {
66
52
  key: "call",
67
53
  value: function () {
68
- var _call = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(name) {
54
+ var _call = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(name) {
69
55
  var _args,
70
56
  opts,
71
57
  start,
72
58
  _args2 = arguments;
73
59
 
74
- return _regenerator.default.wrap(function _callee$(_context) {
60
+ return _index["default"].wrap(function _callee$(_context) {
75
61
  while (1) {
76
62
  switch (_context.prev = _context.next) {
77
63
  case 0:
@@ -222,9 +208,9 @@ var MockWorkerHandle = /*#__PURE__*/function () {
222
208
  return MockWorkerHandle;
223
209
  }();
224
210
 
225
- test('watch worker with long ping, generates timeout', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
211
+ test('watch worker with long ping, generates timeout', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
226
212
  var worker, workerWatcher, result;
227
- return _regenerator.default.wrap(function _callee2$(_context2) {
213
+ return _index["default"].wrap(function _callee2$(_context2) {
228
214
  while (1) {
229
215
  switch (_context2.prev = _context2.next) {
230
216
  case 0:
@@ -255,9 +241,9 @@ test('watch worker with long ping, generates timeout', /*#__PURE__*/(0, _asyncTo
255
241
  }
256
242
  }, _callee2, null, [[2, 9]]);
257
243
  })));
258
- test('test worker abort', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
244
+ test('test worker abort', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3() {
259
245
  var worker, controller, resultP;
260
- return _regenerator.default.wrap(function _callee3$(_context3) {
246
+ return _index["default"].wrap(function _callee3$(_context3) {
261
247
  while (1) {
262
248
  switch (_context3.prev = _context3.next) {
263
249
  case 0:
@@ -290,9 +276,9 @@ test('test worker abort', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PUR
290
276
  }
291
277
  }, _callee3, null, [[2, 10]]);
292
278
  })));
293
- test('watch worker generates multiple pings', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
279
+ test('watch worker generates multiple pings', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee4() {
294
280
  var worker, workerWatcher, result;
295
- return _regenerator.default.wrap(function _callee4$(_context4) {
281
+ return _index["default"].wrap(function _callee4$(_context4) {
296
282
  while (1) {
297
283
  switch (_context4.prev = _context4.next) {
298
284
  case 0:
@@ -311,59 +297,59 @@ test('watch worker generates multiple pings', /*#__PURE__*/(0, _asyncToGenerator
311
297
  })));
312
298
 
313
299
  var MockRpcDriver = /*#__PURE__*/function (_BaseRpcDriver) {
314
- (0, _inherits2.default)(MockRpcDriver, _BaseRpcDriver);
300
+ (0, _inherits2["default"])(MockRpcDriver, _BaseRpcDriver);
315
301
 
316
- var _super = _createSuper(MockRpcDriver);
302
+ var _super = (0, _createSuper2["default"])(MockRpcDriver);
317
303
 
318
304
  function MockRpcDriver() {
319
305
  var _this;
320
306
 
321
- (0, _classCallCheck2.default)(this, MockRpcDriver);
307
+ (0, _classCallCheck2["default"])(this, MockRpcDriver);
322
308
 
323
309
  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
324
310
  args[_key] = arguments[_key];
325
311
  }
326
312
 
327
313
  _this = _super.call.apply(_super, [this].concat(args));
328
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'MockRpcDriver');
329
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "maxPingTime", 1000);
330
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "workerCheckFrequency", 500);
314
+ _this.name = 'MockRpcDriver';
315
+ _this.maxPingTime = 1000;
316
+ _this.workerCheckFrequency = 500;
331
317
  return _this;
332
318
  }
333
319
 
334
- (0, _createClass2.default)(MockRpcDriver, [{
320
+ (0, _createClass2["default"])(MockRpcDriver, [{
335
321
  key: "makeWorker",
336
322
  value: function makeWorker(_pluginManager) {
337
323
  return new MockWorkerHandle();
338
324
  }
339
325
  }]);
340
326
  return MockRpcDriver;
341
- }(_BaseRpcDriver2.default);
327
+ }(_BaseRpcDriver2["default"]);
342
328
 
343
329
  var MockRendererTimeout = /*#__PURE__*/function (_RpcMethodType) {
344
- (0, _inherits2.default)(MockRendererTimeout, _RpcMethodType);
330
+ (0, _inherits2["default"])(MockRendererTimeout, _RpcMethodType);
345
331
 
346
- var _super2 = _createSuper(MockRendererTimeout);
332
+ var _super2 = (0, _createSuper2["default"])(MockRendererTimeout);
347
333
 
348
334
  function MockRendererTimeout() {
349
335
  var _this2;
350
336
 
351
- (0, _classCallCheck2.default)(this, MockRendererTimeout);
337
+ (0, _classCallCheck2["default"])(this, MockRendererTimeout);
352
338
 
353
339
  for (var _len2 = arguments.length, args = new Array(_len2), _key2 = 0; _key2 < _len2; _key2++) {
354
340
  args[_key2] = arguments[_key2];
355
341
  }
356
342
 
357
343
  _this2 = _super2.call.apply(_super2, [this].concat(args));
358
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this2), "name", 'MockRenderTimeout');
344
+ _this2.name = 'MockRenderTimeout';
359
345
  return _this2;
360
346
  }
361
347
 
362
- (0, _createClass2.default)(MockRendererTimeout, [{
348
+ (0, _createClass2["default"])(MockRendererTimeout, [{
363
349
  key: "execute",
364
350
  value: function () {
365
- var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5() {
366
- return _regenerator.default.wrap(function _callee5$(_context5) {
351
+ var _execute = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee5() {
352
+ return _index["default"].wrap(function _callee5$(_context5) {
367
353
  while (1) {
368
354
  switch (_context5.prev = _context5.next) {
369
355
  case 0:
@@ -382,34 +368,34 @@ var MockRendererTimeout = /*#__PURE__*/function (_RpcMethodType) {
382
368
  }()
383
369
  }]);
384
370
  return MockRendererTimeout;
385
- }(_RpcMethodType3.default);
371
+ }(_RpcMethodType3["default"]);
386
372
 
387
373
  exports.MockRendererTimeout = MockRendererTimeout;
388
374
 
389
375
  var MockRendererShort = /*#__PURE__*/function (_RpcMethodType2) {
390
- (0, _inherits2.default)(MockRendererShort, _RpcMethodType2);
376
+ (0, _inherits2["default"])(MockRendererShort, _RpcMethodType2);
391
377
 
392
- var _super3 = _createSuper(MockRendererShort);
378
+ var _super3 = (0, _createSuper2["default"])(MockRendererShort);
393
379
 
394
380
  function MockRendererShort() {
395
381
  var _this3;
396
382
 
397
- (0, _classCallCheck2.default)(this, MockRendererShort);
383
+ (0, _classCallCheck2["default"])(this, MockRendererShort);
398
384
 
399
385
  for (var _len3 = arguments.length, args = new Array(_len3), _key3 = 0; _key3 < _len3; _key3++) {
400
386
  args[_key3] = arguments[_key3];
401
387
  }
402
388
 
403
389
  _this3 = _super3.call.apply(_super3, [this].concat(args));
404
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this3), "name", 'MockRenderShort');
390
+ _this3.name = 'MockRenderShort';
405
391
  return _this3;
406
392
  }
407
393
 
408
- (0, _createClass2.default)(MockRendererShort, [{
394
+ (0, _createClass2["default"])(MockRendererShort, [{
409
395
  key: "execute",
410
396
  value: function () {
411
- var _execute2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6() {
412
- return _regenerator.default.wrap(function _callee6$(_context6) {
397
+ var _execute2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee6() {
398
+ return _index["default"].wrap(function _callee6$(_context6) {
413
399
  while (1) {
414
400
  switch (_context6.prev = _context6.next) {
415
401
  case 0:
@@ -428,12 +414,12 @@ var MockRendererShort = /*#__PURE__*/function (_RpcMethodType2) {
428
414
  }()
429
415
  }]);
430
416
  return MockRendererShort;
431
- }(_RpcMethodType3.default);
417
+ }(_RpcMethodType3["default"]);
432
418
 
433
419
  exports.MockRendererShort = MockRendererShort;
434
- test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7() {
420
+ test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee7() {
435
421
  var config, driver, pluginManager;
436
- return _regenerator.default.wrap(function _callee7$(_context7) {
422
+ return _index["default"].wrap(function _callee7$(_context7) {
437
423
  while (1) {
438
424
  switch (_context7.prev = _context7.next) {
439
425
  case 0:
@@ -443,7 +429,7 @@ test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _a
443
429
  driver = new MockRpcDriver({
444
430
  config: config
445
431
  });
446
- pluginManager = new _PluginManager.default();
432
+ pluginManager = new _PluginManager["default"]();
447
433
  pluginManager.addRpcMethod(function () {
448
434
  return new MockRendererTimeout(pluginManager);
449
435
  });
@@ -475,9 +461,9 @@ test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _a
475
461
  }
476
462
  }, _callee7, null, [[8, 13]]);
477
463
  })));
478
- test('remote abort', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee8() {
464
+ test('remote abort', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee8() {
479
465
  var config, driver, pluginManager, controller, resP;
480
- return _regenerator.default.wrap(function _callee8$(_context8) {
466
+ return _index["default"].wrap(function _callee8$(_context8) {
481
467
  while (1) {
482
468
  switch (_context8.prev = _context8.next) {
483
469
  case 0:
@@ -487,7 +473,7 @@ test('remote abort', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/
487
473
  driver = new MockRpcDriver({
488
474
  config: config
489
475
  });
490
- pluginManager = new _PluginManager.default();
476
+ pluginManager = new _PluginManager["default"]();
491
477
  pluginManager.addRpcMethod(function () {
492
478
  return new MockRendererShort(pluginManager);
493
479
  });