@jbrowse/core 1.5.3 → 1.5.7

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Files changed (150) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -2
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +113 -100
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +59 -66
  4. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  5. package/BaseFeatureWidget/index.js +1 -1
  6. package/BaseFeatureWidget/index.test.js +3 -3
  7. package/BaseFeatureWidget/types.js +5 -1
  8. package/BaseFeatureWidget/util.js +9 -13
  9. package/CorePlugin.js +19 -31
  10. package/Plugin.js +11 -13
  11. package/PluginLoader.js +33 -38
  12. package/PluginManager.d.ts +5 -5
  13. package/PluginManager.js +55 -60
  14. package/ReExports/index.js +4 -4
  15. package/ReExports/list.js +2 -2
  16. package/ReExports/material-ui-colors.js +20 -20
  17. package/ReExports/modules.js +47 -51
  18. package/TextSearch/BaseResults.js +24 -34
  19. package/TextSearch/BaseResults.test.js +3 -7
  20. package/TextSearch/TextSearchManager.d.ts +1 -1
  21. package/TextSearch/TextSearchManager.js +15 -18
  22. package/assemblyManager/assembly.js +34 -39
  23. package/assemblyManager/assemblyConfigSchema.js +2 -2
  24. package/assemblyManager/assemblyManager.js +16 -20
  25. package/assemblyManager/index.js +3 -3
  26. package/configuration/configurationSchema.js +17 -19
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/util.js +5 -5
  30. package/data_adapters/BaseAdapter.d.ts +4 -4
  31. package/data_adapters/BaseAdapter.js +36 -47
  32. package/data_adapters/BaseAdapter.test.js +24 -30
  33. package/data_adapters/CytobandAdapter.js +16 -22
  34. package/data_adapters/dataAdapterCache.js +9 -9
  35. package/package.json +7 -7
  36. package/pluggableElementTypes/AdapterType.js +22 -29
  37. package/pluggableElementTypes/ConnectionType.js +18 -26
  38. package/pluggableElementTypes/DisplayType.js +17 -25
  39. package/pluggableElementTypes/InternetAccountType.js +14 -22
  40. package/pluggableElementTypes/PluggableElementBase.js +9 -10
  41. package/pluggableElementTypes/RpcMethodType.js +40 -56
  42. package/pluggableElementTypes/RpcMethodType.test.js +17 -23
  43. package/pluggableElementTypes/TextSearchAdapterType.js +15 -23
  44. package/pluggableElementTypes/TrackType.js +15 -25
  45. package/pluggableElementTypes/ViewType.js +15 -25
  46. package/pluggableElementTypes/WidgetType.js +17 -25
  47. package/pluggableElementTypes/index.js +11 -11
  48. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  49. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  50. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  51. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  52. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  53. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  54. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  55. package/pluggableElementTypes/models/index.js +4 -4
  56. package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
  57. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -16
  58. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
  59. package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
  60. package/pluggableElementTypes/renderers/RendererType.js +21 -31
  61. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  62. package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
  63. package/pluggableElementTypes/renderers/index.js +8 -8
  64. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  65. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  66. package/rpc/BaseRpcDriver.d.ts +1 -1
  67. package/rpc/BaseRpcDriver.js +37 -42
  68. package/rpc/BaseRpcDriver.test.js +49 -63
  69. package/rpc/MainThreadRpcDriver.js +22 -32
  70. package/rpc/RpcManager.d.ts +2 -2
  71. package/rpc/RpcManager.js +20 -25
  72. package/rpc/WebWorkerRpcDriver.d.ts +2 -2
  73. package/rpc/WebWorkerRpcDriver.js +29 -40
  74. package/rpc/configSchema.js +2 -2
  75. package/rpc/coreRpcMethods.js +72 -82
  76. package/rpc/remoteAbortSignals.js +3 -3
  77. package/ui/AboutDialog.js +17 -21
  78. package/ui/App.js +38 -42
  79. package/ui/AssemblySelector.js +5 -5
  80. package/ui/Drawer.js +7 -7
  81. package/ui/DrawerWidget.js +33 -37
  82. package/ui/DropDownMenu.js +9 -21
  83. package/ui/EditableTypography.js +19 -30
  84. package/ui/ErrorMessage.js +5 -5
  85. package/ui/FactoryResetDialog.js +8 -8
  86. package/ui/FatalErrorDialog.js +12 -29
  87. package/ui/FatalErrorDialog.test.js +11 -11
  88. package/ui/FileSelector/FileSelector.js +32 -42
  89. package/ui/FileSelector/LocalFileChooser.js +9 -9
  90. package/ui/FileSelector/UrlChooser.js +4 -4
  91. package/ui/FileSelector/index.js +4 -4
  92. package/ui/Icons.js +9 -9
  93. package/ui/Logo.js +19 -19
  94. package/ui/Menu.js +35 -46
  95. package/ui/NewSessionCards.js +19 -29
  96. package/ui/PrerenderedCanvas.js +10 -27
  97. package/ui/ResizeHandle.js +10 -17
  98. package/ui/SanitizedHTML.js +5 -5
  99. package/ui/SanitizedHTML.test.js +4 -4
  100. package/ui/Snackbar.js +12 -16
  101. package/ui/SnackbarModel.js +1 -1
  102. package/ui/Tooltip.js +7 -11
  103. package/ui/ViewContainer.js +20 -30
  104. package/ui/index.js +13 -17
  105. package/ui/theme.js +11 -15
  106. package/util/Base1DViewModel.js +10 -14
  107. package/util/Base1DViewModel.test.js +5 -5
  108. package/util/QuickLRU.js +27 -31
  109. package/util/aborting.js +16 -24
  110. package/util/analytics.js +7 -7
  111. package/util/blockTypes.js +36 -49
  112. package/util/calculateDynamicBlocks.js +4 -4
  113. package/util/calculateDynamicBlocks.test.js +10 -14
  114. package/util/calculateStaticBlocks.js +1 -1
  115. package/util/calculateStaticBlocks.test.js +15 -15
  116. package/util/compositeMap.js +30 -41
  117. package/util/idMaker.js +4 -4
  118. package/util/index.js +35 -48
  119. package/util/index.test.js +7 -11
  120. package/util/io/RemoteFileWithRangeCache.js +29 -41
  121. package/util/io/index.js +6 -6
  122. package/util/jexl.js +8 -5
  123. package/util/jexlStrings.js +2 -2
  124. package/util/jexlStrings.test.js +2 -2
  125. package/util/layouts/BaseLayout.js +5 -1
  126. package/util/layouts/GranularRectLayout.js +28 -34
  127. package/util/layouts/GranularRectLayout.test.js +10 -10
  128. package/util/layouts/MultiLayout.d.ts +1 -1
  129. package/util/layouts/MultiLayout.js +14 -21
  130. package/util/layouts/PrecomputedLayout.js +14 -16
  131. package/util/layouts/PrecomputedMultiLayout.js +18 -22
  132. package/util/layouts/SceneGraph.d.ts +3 -3
  133. package/util/layouts/SceneGraph.js +17 -31
  134. package/util/layouts/index.js +6 -6
  135. package/util/mst-reflection.d.ts +3 -3
  136. package/util/offscreenCanvasPonyfill.js +29 -31
  137. package/util/offscreenCanvasUtils.js +6 -6
  138. package/util/range.test.js +20 -20
  139. package/util/rxjs.js +2 -2
  140. package/util/simpleFeature.js +19 -24
  141. package/util/simpleFeature.test.js +3 -3
  142. package/util/stats.js +7 -11
  143. package/util/stats.test.js +15 -15
  144. package/util/types/index.d.ts +2 -0
  145. package/util/types/index.js +29 -36
  146. package/util/types/mst.js +15 -19
  147. package/util/types/util.js +5 -1
  148. package/util/when.js +6 -6
  149. package/babel.config.d.ts +0 -15
  150. package/babel.config.js +0 -19
@@ -1,31 +1,29 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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  exports.CoreRender = exports.CoreGetRefNames = exports.CoreGetMetadata = exports.CoreGetFileInfo = exports.CoreGetFeatures = exports.CoreFreeResources = void 0;
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- var _get2 = _interopRequireDefault(require("@babel/runtime/helpers/get"));
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+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
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- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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+ var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
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+ var _get2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/get.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _getPrototypeOf2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/getPrototypeOf.js"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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- var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
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+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
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+ var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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+ var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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  var _operators = require("rxjs/operators");
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@@ -41,40 +39,32 @@ var _util = require("../util");
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  var _simpleFeature = _interopRequireDefault(require("../util/simpleFeature"));
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- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
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-
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
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-
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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-
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- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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-
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  var CoreGetRefNames = /*#__PURE__*/function (_RpcMethodType) {
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- (0, _inherits2.default)(CoreGetRefNames, _RpcMethodType);
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+ (0, _inherits2["default"])(CoreGetRefNames, _RpcMethodType);
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- var _super = _createSuper(CoreGetRefNames);
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+ var _super = (0, _createSuper2["default"])(CoreGetRefNames);
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  function CoreGetRefNames() {
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  var _this;
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- (0, _classCallCheck2.default)(this, CoreGetRefNames);
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+ (0, _classCallCheck2["default"])(this, CoreGetRefNames);
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  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
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  args[_key] = arguments[_key];
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  }
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  _this = _super.call.apply(_super, [this].concat(args));
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- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'CoreGetRefNames');
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+ _this.name = 'CoreGetRefNames';
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  return _this;
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  }
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- (0, _createClass2.default)(CoreGetRefNames, [{
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+ (0, _createClass2["default"])(CoreGetRefNames, [{
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  key: "execute",
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  value: function () {
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- var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args, rpcDriverClassName) {
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+ var _execute = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(args, rpcDriverClassName) {
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  var deserializedArgs, sessionId, adapterConfig, _yield$getAdapter, dataAdapter;
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+ return _index["default"].wrap(function _callee$(_context) {
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@@ -117,36 +107,36 @@ var CoreGetRefNames = /*#__PURE__*/function (_RpcMethodType) {
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  }()
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  }]);
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  return CoreGetRefNames;
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- }(_RpcMethodType7.default);
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+ }(_RpcMethodType7["default"]);
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  exports.CoreGetRefNames = CoreGetRefNames;
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  var CoreGetFileInfo = /*#__PURE__*/function (_RpcMethodType2) {
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- (0, _inherits2.default)(CoreGetFileInfo, _RpcMethodType2);
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+ (0, _inherits2["default"])(CoreGetFileInfo, _RpcMethodType2);
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- var _super2 = _createSuper(CoreGetFileInfo);
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+ var _super2 = (0, _createSuper2["default"])(CoreGetFileInfo);
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  function CoreGetFileInfo() {
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  var _this2;
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+ (0, _classCallCheck2["default"])(this, CoreGetFileInfo);
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  }
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  _this2 = _super2.call.apply(_super2, [this].concat(args));
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- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this2), "name", 'CoreGetInfo');
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+ _this2.name = 'CoreGetInfo';
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  return _this2;
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  }
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- (0, _createClass2.default)(CoreGetFileInfo, [{
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+ (0, _createClass2["default"])(CoreGetFileInfo, [{
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  key: "execute",
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  value: function () {
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- var _execute2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(args, rpcDriverClassName) {
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+ var _execute2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(args, rpcDriverClassName) {
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  var deserializedArgs, sessionId, adapterConfig, _yield$getAdapter2, dataAdapter;
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+ return _index["default"].wrap(function _callee2$(_context2) {
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@@ -180,36 +170,36 @@ var CoreGetFileInfo = /*#__PURE__*/function (_RpcMethodType2) {
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  }()
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  }]);
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  return CoreGetFileInfo;
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- }(_RpcMethodType7.default);
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+ }(_RpcMethodType7["default"]);
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  exports.CoreGetFileInfo = CoreGetFileInfo;
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  var CoreGetMetadata = /*#__PURE__*/function (_RpcMethodType3) {
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+ (0, _inherits2["default"])(CoreGetMetadata, _RpcMethodType3);
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+ var _super3 = (0, _createSuper2["default"])(CoreGetMetadata);
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+ (0, _classCallCheck2["default"])(this, CoreGetMetadata);
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  }
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  _this3 = _super3.call.apply(_super3, [this].concat(args));
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+ _this3.name = 'CoreGetMetadata';
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  return _this3;
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  key: "execute",
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  value: function () {
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- var _execute3 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(args, rpcDriverClassName) {
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+ var _execute3 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3(args, rpcDriverClassName) {
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@@ -243,45 +233,45 @@ var CoreGetMetadata = /*#__PURE__*/function (_RpcMethodType3) {
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  }()
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  return CoreGetMetadata;
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- }(_RpcMethodType7.default);
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+ }(_RpcMethodType7["default"]);
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+ (0, _inherits2["default"])(CoreGetFeatures, _RpcMethodType4);
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+ var _super4 = (0, _createSuper2["default"])(CoreGetFeatures);
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  args[_key4] = arguments[_key4];
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  }
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  _this4 = _super4.call.apply(_super4, [this].concat(args));
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- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this4), "name", 'CoreGetFeatures');
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+ _this4.name = 'CoreGetFeatures';
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  return _this4;
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  }
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  key: "deserializeReturn",
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  value: function () {
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- var _deserializeReturn = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(feats, args, rpcDriverClassName) {
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- return _regenerator.default.wrap(function _callee4$(_context4) {
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- return (0, _get2.default)((0, _getPrototypeOf2.default)(CoreGetFeatures.prototype), "deserializeReturn", this).call(this, feats, args, rpcDriverClassName);
269
+ return (0, _get2["default"])((0, _getPrototypeOf2["default"])(CoreGetFeatures.prototype), "deserializeReturn", this).call(this, feats, args, rpcDriverClassName);
280
270
 
281
271
  case 2:
282
272
  superDeserialized = _context4.sent;
283
273
  return _context4.abrupt("return", superDeserialized.map(function (feat) {
284
- return new _simpleFeature.default(feat);
274
+ return new _simpleFeature["default"](feat);
285
275
  }));
286
276
 
287
277
  case 4:
@@ -301,10 +291,10 @@ var CoreGetFeatures = /*#__PURE__*/function (_RpcMethodType4) {
301
291
  }, {
302
292
  key: "execute",
303
293
  value: function () {
304
- var _execute4 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(args, rpcDriverClassName) {
294
+ var _execute4 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee5(args, rpcDriverClassName) {
305
295
  var deserializedArgs, signal, sessionId, adapterConfig, region, opts, _yield$getAdapter4, dataAdapter, ret, r;
306
296
 
307
- return _regenerator.default.wrap(function _callee5$(_context5) {
297
+ return _index["default"].wrap(function _callee5$(_context5) {
308
298
  while (1) {
309
299
  switch (_context5.prev = _context5.next) {
310
300
  case 0:
@@ -329,7 +319,7 @@ var CoreGetFeatures = /*#__PURE__*/function (_RpcMethodType4) {
329
319
  return _context5.abrupt("return", []);
330
320
 
331
321
  case 10:
332
- ret = dataAdapter.getFeatures(region, _objectSpread(_objectSpread({}, opts), {}, {
322
+ ret = dataAdapter.getFeatures(region, (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, opts), {}, {
333
323
  signal: signal
334
324
  }));
335
325
  _context5.next = 13;
@@ -357,7 +347,7 @@ var CoreGetFeatures = /*#__PURE__*/function (_RpcMethodType4) {
357
347
  }()
358
348
  }]);
359
349
  return CoreGetFeatures;
360
- }(_RpcMethodType7.default);
350
+ }(_RpcMethodType7["default"]);
361
351
  /**
362
352
  * free up any resources (e.g. cached adapter objects)
363
353
  * that are only associated with the given track ID.
@@ -369,30 +359,30 @@ var CoreGetFeatures = /*#__PURE__*/function (_RpcMethodType4) {
369
359
  exports.CoreGetFeatures = CoreGetFeatures;
370
360
 
371
361
  var CoreFreeResources = /*#__PURE__*/function (_RpcMethodType5) {
372
- (0, _inherits2.default)(CoreFreeResources, _RpcMethodType5);
362
+ (0, _inherits2["default"])(CoreFreeResources, _RpcMethodType5);
373
363
 
374
- var _super5 = _createSuper(CoreFreeResources);
364
+ var _super5 = (0, _createSuper2["default"])(CoreFreeResources);
375
365
 
376
366
  function CoreFreeResources() {
377
367
  var _this5;
378
368
 
379
- (0, _classCallCheck2.default)(this, CoreFreeResources);
369
+ (0, _classCallCheck2["default"])(this, CoreFreeResources);
380
370
 
381
371
  for (var _len5 = arguments.length, args = new Array(_len5), _key5 = 0; _key5 < _len5; _key5++) {
382
372
  args[_key5] = arguments[_key5];
383
373
  }
384
374
 
385
375
  _this5 = _super5.call.apply(_super5, [this].concat(args));
386
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this5), "name", 'CoreFreeResources');
376
+ _this5.name = 'CoreFreeResources';
387
377
  return _this5;
388
378
  }
389
379
 
390
- (0, _createClass2.default)(CoreFreeResources, [{
380
+ (0, _createClass2["default"])(CoreFreeResources, [{
391
381
  key: "execute",
392
382
  value: function () {
393
- var _execute5 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(specification) {
383
+ var _execute5 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee6(specification) {
394
384
  var deleteCount;
395
- return _regenerator.default.wrap(function _callee6$(_context6) {
385
+ return _index["default"].wrap(function _callee6$(_context6) {
396
386
  while (1) {
397
387
  switch (_context6.prev = _context6.next) {
398
388
  case 0:
@@ -425,8 +415,8 @@ var CoreFreeResources = /*#__PURE__*/function (_RpcMethodType5) {
425
415
  }, {
426
416
  key: "serializeArguments",
427
417
  value: function () {
428
- var _serializeArguments = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7(args, _rpcDriverClassName) {
429
- return _regenerator.default.wrap(function _callee7$(_context7) {
418
+ var _serializeArguments = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee7(args, _rpcDriverClassName) {
419
+ return _index["default"].wrap(function _callee7$(_context7) {
430
420
  while (1) {
431
421
  switch (_context7.prev = _context7.next) {
432
422
  case 0:
@@ -448,7 +438,7 @@ var CoreFreeResources = /*#__PURE__*/function (_RpcMethodType5) {
448
438
  }()
449
439
  }]);
450
440
  return CoreFreeResources;
451
- }(_RpcMethodType7.default);
441
+ }(_RpcMethodType7["default"]);
452
442
 
453
443
  exports.CoreFreeResources = CoreFreeResources;
454
444
 
@@ -456,32 +446,32 @@ exports.CoreFreeResources = CoreFreeResources;
456
446
  * fetches features from an adapter and call a renderer with them
457
447
  */
458
448
  var CoreRender = /*#__PURE__*/function (_RpcMethodType6) {
459
- (0, _inherits2.default)(CoreRender, _RpcMethodType6);
449
+ (0, _inherits2["default"])(CoreRender, _RpcMethodType6);
460
450
 
461
- var _super6 = _createSuper(CoreRender);
451
+ var _super6 = (0, _createSuper2["default"])(CoreRender);
462
452
 
463
453
  function CoreRender() {
464
454
  var _this6;
465
455
 
466
- (0, _classCallCheck2.default)(this, CoreRender);
456
+ (0, _classCallCheck2["default"])(this, CoreRender);
467
457
 
468
458
  for (var _len6 = arguments.length, args = new Array(_len6), _key6 = 0; _key6 < _len6; _key6++) {
469
459
  args[_key6] = arguments[_key6];
470
460
  }
471
461
 
472
462
  _this6 = _super6.call.apply(_super6, [this].concat(args));
473
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this6), "name", 'CoreRender');
463
+ _this6.name = 'CoreRender';
474
464
  return _this6;
475
465
  }
476
466
 
477
- (0, _createClass2.default)(CoreRender, [{
467
+ (0, _createClass2["default"])(CoreRender, [{
478
468
  key: "serializeArguments",
479
469
  value: function () {
480
- var _serializeArguments2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee8(args, rpcDriverClassName) {
470
+ var _serializeArguments2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee8(args, rpcDriverClassName) {
481
471
  var _this$pluginManager$r, _this$pluginManager$r2;
482
472
 
483
473
  var assemblyManager, renamedArgs, superArgs, rendererType, RendererType;
484
- return _regenerator.default.wrap(function _callee8$(_context8) {
474
+ return _index["default"].wrap(function _callee8$(_context8) {
485
475
  while (1) {
486
476
  switch (_context8.prev = _context8.next) {
487
477
  case 0:
@@ -506,7 +496,7 @@ var CoreRender = /*#__PURE__*/function (_RpcMethodType6) {
506
496
  case 8:
507
497
  renamedArgs = _context8.t0;
508
498
  _context8.next = 11;
509
- return (0, _get2.default)((0, _getPrototypeOf2.default)(CoreRender.prototype), "serializeArguments", this).call(this, renamedArgs, rpcDriverClassName);
499
+ return (0, _get2["default"])((0, _getPrototypeOf2["default"])(CoreRender.prototype), "serializeArguments", this).call(this, renamedArgs, rpcDriverClassName);
510
500
 
511
501
  case 11:
512
502
  superArgs = _context8.sent;
@@ -540,10 +530,10 @@ var CoreRender = /*#__PURE__*/function (_RpcMethodType6) {
540
530
  }, {
541
531
  key: "execute",
542
532
  value: function () {
543
- var _execute6 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee9(args, rpcDriverClassName) {
533
+ var _execute6 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee9(args, rpcDriverClassName) {
544
534
  var deserializedArgs, _deserializedArgs, sessionId, rendererType, signal, RendererType, result;
545
535
 
546
- return _regenerator.default.wrap(function _callee9$(_context9) {
536
+ return _index["default"].wrap(function _callee9$(_context9) {
547
537
  while (1) {
548
538
  switch (_context9.prev = _context9.next) {
549
539
  case 0:
@@ -616,14 +606,14 @@ var CoreRender = /*#__PURE__*/function (_RpcMethodType6) {
616
606
  }, {
617
607
  key: "deserializeReturn",
618
608
  value: function () {
619
- var _deserializeReturn2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee10(serializedReturn, args, rpcDriverClassName) {
609
+ var _deserializeReturn2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee10(serializedReturn, args, rpcDriverClassName) {
620
610
  var superDeserialized, rendererType, RendererType;
621
- return _regenerator.default.wrap(function _callee10$(_context10) {
611
+ return _index["default"].wrap(function _callee10$(_context10) {
622
612
  while (1) {
623
613
  switch (_context10.prev = _context10.next) {
624
614
  case 0:
625
615
  _context10.next = 2;
626
- return (0, _get2.default)((0, _getPrototypeOf2.default)(CoreRender.prototype), "deserializeReturn", this).call(this, serializedReturn, args, rpcDriverClassName);
616
+ return (0, _get2["default"])((0, _getPrototypeOf2["default"])(CoreRender.prototype), "deserializeReturn", this).call(this, serializedReturn, args, rpcDriverClassName);
627
617
 
628
618
  case 2:
629
619
  superDeserialized = _context10.sent;
@@ -656,7 +646,7 @@ var CoreRender = /*#__PURE__*/function (_RpcMethodType6) {
656
646
  }()
657
647
  }]);
658
648
  return CoreRender;
659
- }(_RpcMethodType7.default);
649
+ }(_RpcMethodType7["default"]);
660
650
 
661
651
  exports.CoreRender = CoreRender;
662
652
 
@@ -670,7 +660,7 @@ function validateRendererType(rendererType, RendererType) {
670
660
  throw new Error("renderer ".concat(rendererType, " has no ReactComponent, it may not be completely implemented yet"));
671
661
  }
672
662
 
673
- if (!(RendererType instanceof _ServerSideRendererType.default)) {
663
+ if (!(RendererType instanceof _ServerSideRendererType["default"])) {
674
664
  throw new Error('CoreRender requires a renderer that is a subclass of ServerSideRendererType');
675
665
  }
676
666
 
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -11,7 +11,7 @@ exports.remoteAbort = remoteAbort;
11
11
  exports.remoteAbortRpcHandler = remoteAbortRpcHandler;
12
12
  exports.serializeAbortSignal = serializeAbortSignal;
13
13
 
14
- var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
14
+ var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
15
15
 
16
16
  /* ---------------- for the RPC client ----------------- */
17
17
  var abortSignalCounter = 0;
@@ -54,7 +54,7 @@ function serializeAbortSignal(signal, callfunc) {
54
54
 
55
55
 
56
56
  function isRemoteAbortSignal(thing) {
57
- return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'abortSignalId' in thing && // @ts-ignore
57
+ return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'abortSignalId' in thing && // @ts-ignore
58
58
  typeof thing.abortSignalId === 'number';
59
59
  } // the server side keeps a set of surrogate abort controllers that can be
60
60
  // aborted based on ID
package/ui/AboutDialog.js CHANGED
@@ -1,19 +1,19 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
4
4
 
5
- var _typeof = require("@babel/runtime/helpers/typeof");
5
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
6
6
 
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports.default = AboutDialog;
10
+ exports["default"] = AboutDialog;
11
11
 
12
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
12
+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
13
13
 
14
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
14
+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
15
15
 
16
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
16
+ var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
17
17
 
18
18
  var _react = _interopRequireWildcard(require("react"));
19
19
 
@@ -27,10 +27,6 @@ var _util = require("../util");
27
27
 
28
28
  var _BaseFeatureDetail = require("../BaseFeatureWidget/BaseFeatureDetail");
29
29
 
30
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
31
-
32
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
33
-
34
30
  var useStyles = (0, _core.makeStyles)(function (theme) {
35
31
  return {
36
32
  closeButton: {
@@ -48,12 +44,12 @@ function AboutDialog(_ref) {
48
44
  var classes = useStyles();
49
45
 
50
46
  var _useState = (0, _react.useState)(),
51
- _useState2 = (0, _slicedToArray2.default)(_useState, 2),
47
+ _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
52
48
  info = _useState2[0],
53
49
  setInfo = _useState2[1];
54
50
 
55
51
  var _useState3 = (0, _react.useState)(),
56
- _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
52
+ _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
57
53
  error = _useState4[0],
58
54
  setError = _useState4[1];
59
55
 
@@ -64,9 +60,9 @@ function AboutDialog(_ref) {
64
60
  var aborter = new AbortController();
65
61
  var signal = aborter.signal;
66
62
  var cancelled = false;
67
- (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
63
+ (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
68
64
  var adapterConfig, result;
69
- return _regenerator.default.wrap(function _callee$(_context) {
65
+ return _index["default"].wrap(function _callee$(_context) {
70
66
  while (1) {
71
67
  switch (_context.prev = _context.next) {
72
68
  case 0:
@@ -123,24 +119,24 @@ function AboutDialog(_ref) {
123
119
  var details = typeof info === 'string' ? {
124
120
  header: "<pre>".concat(info.replace(/</g, '&lt;').replace(/>/g, '&gt;'), "</pre>")
125
121
  } : info || {};
126
- return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
122
+ return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
127
123
  open: true,
128
124
  onClose: handleClose
129
- }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, trackName, /*#__PURE__*/_react.default.createElement(_core.IconButton, {
125
+ }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, trackName, /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
130
126
  className: classes.closeButton,
131
127
  onClick: function onClick() {
132
128
  return handleClose();
133
129
  }
134
- }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_BaseFeatureDetail.BaseCard, {
130
+ }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, /*#__PURE__*/_react["default"].createElement(_BaseFeatureDetail.BaseCard, {
135
131
  title: "Configuration"
136
- }, /*#__PURE__*/_react.default.createElement(_BaseFeatureDetail.Attributes, {
132
+ }, /*#__PURE__*/_react["default"].createElement(_BaseFeatureDetail.Attributes, {
137
133
  attributes: conf,
138
134
  omit: ['displays', 'baseUri', 'refNames']
139
- })), info !== null ? /*#__PURE__*/_react.default.createElement(_BaseFeatureDetail.BaseCard, {
135
+ })), info !== null ? /*#__PURE__*/_react["default"].createElement(_BaseFeatureDetail.BaseCard, {
140
136
  title: "File info"
141
- }, error ? /*#__PURE__*/_react.default.createElement(_core.Typography, {
137
+ }, error ? /*#__PURE__*/_react["default"].createElement(_core.Typography, {
142
138
  color: "error"
143
- }, "".concat(error)) : !info ? 'Loading file data...' : /*#__PURE__*/_react.default.createElement(_BaseFeatureDetail.Attributes, {
139
+ }, "".concat(error)) : !info ? 'Loading file data...' : /*#__PURE__*/_react["default"].createElement(_BaseFeatureDetail.Attributes, {
144
140
  attributes: details
145
141
  })) : null));
146
142
  }