@cornerstonejs/tools 2.0.0-beta.1 → 2.0.0-beta.3

package/dist/esm/tools/annotation/LengthTool.js.map

@@ -1 +1 @@
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package/dist/esm/tools/annotation/PlanarFreehandROITool.d.ts

@@ -2,7 +2,6 @@ import type { Types } from '@cornerstonejs/core';
 import { AnnotationTool } from '../base';
 import { EventTypes, ToolHandle, Annotations, PublicToolProps, ToolProps, SVGDrawingHelper } from '../../types';
 import { PlanarFreehandROIAnnotation } from '../../types/ToolSpecificAnnotationTypes';
-import { ModalityUnitOptions } from '../../utilities/getModalityUnit';
 declare class PlanarFreehandROITool extends AnnotationTool {
     static toolName: any;
     touchDragCallback: any;
@@ -34,8 +33,7 @@ declare class PlanarFreehandROITool extends AnnotationTool {
     filterInteractableAnnotationsForElement(element: HTMLDivElement, annotations: Annotations): Annotations | undefined;
     private filterAnnotationsWithinSlice;
     renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: SVGDrawingHelper) => boolean;
-    _calculateCachedStats: (annotation: any, viewport: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: ModalityUnitOptions) => any;
+    _calculateCachedStats: (annotation: any, viewport: any, renderingEngine: any, enabledElement: any) => any;
     _renderStats: (annotation: any, viewport: any, enabledElement: any, svgDrawingHelper: any) => void;
-    _getTextLines: (data: any, targetId: string) => string[];
 }
 export default PlanarFreehandROITool;

package/dist/esm/tools/annotation/PlanarFreehandROITool.js

@@ -22,6 +22,7 @@ import { getIntersectionCoordinatesWithPolyline } from '../../utilities/math/pol
 import pointInShapeCallback from '../../utilities/pointInShapeCallback';
 import { isViewportPreScaled } from '../../utilities/viewport/isViewportPreScaled';
 import { getModalityUnit, } from '../../utilities/getModalityUnit';
+import { BasicStatsCalculator } from '../../utilities/math/basic';
 const { pointCanProjectOnLine } = polyline;
 const { EPSILON } = CONSTANTS;
 const PARALLEL_THRESHOLD = 1 - EPSILON;
@@ -46,6 +47,8 @@ class PlanarFreehandROITool extends AnnotationTool {
                 knotsRatioPercentageOnEdit: 40,
             },
             calculateStats: false,
+            getTextLines: defaultGetTextLines,
+            statsCalculator: BasicStatsCalculator,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -216,21 +219,19 @@ class PlanarFreehandROITool extends AnnotationTool {
                 });
                 renderStatus = true;
             }
-            if (!this.configuration.calculateStats)
+            if (!this.configuration.calculateStats) {
                 return;
+            }
             annotations.forEach((annotation) => {
                 const activeAnnotationUID = this.commonData?.annotation.annotationUID;
                 if (annotation.annotationUID === activeAnnotationUID &&
-                    !this.commonData?.movingTextBox)
+                    !this.commonData?.movingTextBox) {
                     return;
-                const modalityUnitOptions = {
-                    isPreScaled: isViewportPreScaled(viewport, targetId),
-                    isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
-                };
+                }
                 if (!this.commonData?.movingTextBox) {
                     const { data } = annotation;
                     if (!data.cachedStats[targetId] ||
-                        data.cachedStats[targetId].areaUnit === undefined) {
+                        data.cachedStats[targetId].areaUnit == null) {
                         data.cachedStats[targetId] = {
                             Modality: null,
                             area: null,
@@ -239,17 +240,17 @@ class PlanarFreehandROITool extends AnnotationTool {
                             stdDev: null,
                             areaUnit: null,
                         };
-                        this._calculateCachedStats(annotation, viewport, renderingEngine, enabledElement, modalityUnitOptions);
+                        this._calculateCachedStats(annotation, viewport, renderingEngine, enabledElement);
                     }
                     else if (annotation.invalidated) {
-                        this._throttledCalculateCachedStats(annotation, viewport, renderingEngine, enabledElement, modalityUnitOptions);
+                        this._throttledCalculateCachedStats(annotation, viewport, renderingEngine, enabledElement);
                     }
                 }
                 this._renderStats(annotation, viewport, enabledElement, svgDrawingHelper);
             });
             return renderStatus;
         };
-        this._calculateCachedStats = (annotation, viewport, renderingEngine, enabledElement, modalityUnitOptions) => {
+        this._calculateCachedStats = (annotation, viewport, renderingEngine, enabledElement) => {
             const data = annotation.data;
             const { cachedStats, polyline: points } = data;
             const targetIds = Object.keys(cachedStats);
@@ -261,8 +262,21 @@ class PlanarFreehandROITool extends AnnotationTool {
                 }
                 const { imageData, metadata } = image;
                 const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+                const canvasPoint = canvasCoordinates[0];
+                const originalWorldPoint = viewport.canvasToWorld(canvasPoint);
+                const deltaXPoint = viewport.canvasToWorld([
+                    canvasPoint[0] + 1,
+                    canvasPoint[1],
+                ]);
+                const deltaYPoint = viewport.canvasToWorld([
+                    canvasPoint[0],
+                    canvasPoint[1] + 1,
+                ]);
+                const deltaInX = vec3.distance(originalWorldPoint, deltaXPoint);
+                const deltaInY = vec3.distance(originalWorldPoint, deltaYPoint);
                 const scale = getCalibratedScale(image);
-                const area = polyline.calculateAreaOfPoints(canvasCoordinates) / scale / scale;
+                let area = polyline.calculateAreaOfPoints(canvasCoordinates) / scale / scale;
+                area *= deltaInX * deltaInY;
                 const worldPosIndex = csUtils.transformWorldToIndex(imageData, points[0]);
                 worldPosIndex[0] = Math.floor(worldPosIndex[0]);
                 worldPosIndex[1] = Math.floor(worldPosIndex[1]);
@@ -301,22 +315,10 @@ class PlanarFreehandROITool extends AnnotationTool {
                 ];
                 const worldPosEnd = imageData.indexToWorld([iMax, jMax, kMax]);
                 const canvasPosEnd = viewport.worldToCanvas(worldPosEnd);
-                let count = 0;
-                let sum = 0;
-                let sumSquares = 0;
-                let max = -Infinity;
-                const statCalculator = ({ value: newValue }) => {
-                    if (newValue > max) {
-                        max = newValue;
-                    }
-                    sum += newValue;
-                    sumSquares += newValue ** 2;
-                    count += 1;
-                };
                 let curRow = 0;
                 let intersections = [];
                 let intersectionCounter = 0;
-                pointInShapeCallback(imageData, (pointLPS, pointIJK) => {
+                const pointsInShape = pointInShapeCallback(imageData, (pointLPS, pointIJK) => {
                     let result = true;
                     const point = viewport.worldToCanvas(pointLPS);
                     if (point[1] != curRow) {
@@ -341,17 +343,21 @@ class PlanarFreehandROITool extends AnnotationTool {
                         result = false;
                     }
                     return result;
-                }, statCalculator, boundsIJK);
-                const mean = sum / count;
-                let stdDev = sumSquares / count - mean ** 2;
-                stdDev = Math.sqrt(stdDev);
+                }, this.configuration.statsCalculator.statsCallback, boundsIJK);
+                const modalityUnitOptions = {
+                    isPreScaled: isViewportPreScaled(viewport, targetId),
+                    isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
+                };
                 const modalityUnit = getModalityUnit(metadata.Modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                const stats = this.configuration.statsCalculator.getStatistics();
                 cachedStats[targetId] = {
                     Modality: metadata.Modality,
                     area,
-                    mean,
-                    max,
-                    stdDev,
+                    mean: stats[1]?.value,
+                    max: stats[0]?.value,
+                    stdDev: stats[3]?.value,
+                    statsArray: stats,
+                    pointsInShape: pointsInShape,
                     areaUnit: getCalibratedAreaUnits(null, image),
                     modalityUnit,
                 };
@@ -363,9 +369,19 @@ class PlanarFreehandROITool extends AnnotationTool {
         this._renderStats = (annotation, viewport, enabledElement, svgDrawingHelper) => {
             const data = annotation.data;
             const targetId = this.getTargetId(viewport);
-            const textLines = this._getTextLines(data, targetId);
-            if (!textLines || textLines.length === 0)
+            const styleSpecifier = {
+                toolGroupId: this.toolGroupId,
+                toolName: this.getToolName(),
+                viewportId: enabledElement.viewport.id,
+            };
+            const options = this.getLinkedTextBoxStyle(styleSpecifier, annotation);
+            if (!options.visibility) {
                 return;
+            }
+            const textLines = this.configuration.getTextLines(data, targetId);
+            if (!textLines || textLines.length === 0) {
+                return;
+            }
             const canvasCoordinates = data.polyline.map((p) => viewport.worldToCanvas(p));
             if (!data.handles.textBox.hasMoved) {
                 const canvasTextBoxCoords = getTextBoxCoordsCanvas(canvasCoordinates);
@@ -373,13 +389,8 @@ class PlanarFreehandROITool extends AnnotationTool {
                     viewport.canvasToWorld(canvasTextBoxCoords);
             }
             const textBoxPosition = viewport.worldToCanvas(data.handles.textBox.worldPosition);
-            const styleSpecifier = {
-                toolGroupId: this.toolGroupId,
-                toolName: this.getToolName(),
-                viewportId: enabledElement.viewport.id,
-            };
             const textBoxUID = '1';
-            const boundingBox = drawLinkedTextBox(svgDrawingHelper, annotation.annotationUID ?? '', textBoxUID, textLines, textBoxPosition, canvasCoordinates, {}, this.getLinkedTextBoxStyle(styleSpecifier, annotation));
+            const boundingBox = drawLinkedTextBox(svgDrawingHelper, annotation.annotationUID ?? '', textBoxUID, textLines, textBoxPosition, canvasCoordinates, {}, options);
             const { x: left, y: top, width, height } = boundingBox;
             data.handles.textBox.worldBoundingBox = {
                 topLeft: viewport.canvasToWorld([left, top]),
@@ -388,27 +399,6 @@ class PlanarFreehandROITool extends AnnotationTool {
                 bottomRight: viewport.canvasToWorld([left + width, top + height]),
             };
         };
-        this._getTextLines = (data, targetId) => {
-            const cachedVolumeStats = data.cachedStats[targetId];
-            const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats;
-            const textLines = [];
-            if (area) {
-                const areaLine = isEmptyArea
-                    ? `Area: Oblique not supported`
-                    : `Area: ${roundNumber(area)} ${areaUnit}`;
-                textLines.push(areaLine);
-            }
-            if (mean) {
-                textLines.push(`Mean: ${roundNumber(mean)} ${modalityUnit}`);
-            }
-            if (max) {
-                textLines.push(`Max: ${roundNumber(max)} ${modalityUnit}`);
-            }
-            if (stdDev) {
-                textLines.push(`Std Dev: ${roundNumber(stdDev)} ${modalityUnit}`);
-            }
-            return textLines;
-        };
         registerDrawLoop(this);
         registerEditLoopCommon(this);
         registerClosedContourEditLoop(this);
@@ -467,6 +457,27 @@ class PlanarFreehandROITool extends AnnotationTool {
         return annotationsWithinSlice;
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats;
+    const textLines = [];
+    if (area) {
+        const areaLine = isEmptyArea
+            ? `Area: Oblique not supported`
+            : `Area: ${roundNumber(area)} ${areaUnit}`;
+        textLines.push(areaLine);
+    }
+    if (mean) {
+        textLines.push(`Mean: ${roundNumber(mean)} ${modalityUnit}`);
+    }
+    if (max) {
+        textLines.push(`Max: ${roundNumber(max)} ${modalityUnit}`);
+    }
+    if (stdDev) {
+        textLines.push(`Std Dev: ${roundNumber(stdDev)} ${modalityUnit}`);
+    }
+    return textLines;
+}
 PlanarFreehandROITool.toolName = 'PlanarFreehandROI';
 export default PlanarFreehandROITool;
 //# sourceMappingURL=PlanarFreehandROITool.js.map

package/dist/esm/tools/annotation/PlanarFreehandROITool.js.map

@@ -1 +1 @@
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package/dist/esm/tools/annotation/ProbeTool.d.ts

@@ -2,7 +2,6 @@ import type { Types } from '@cornerstonejs/core';
 import { AnnotationTool } from '../base';
 import { EventTypes, ToolHandle, PublicToolProps, ToolProps, SVGDrawingHelper } from '../../types';
 import { ProbeAnnotation } from '../../types/ToolSpecificAnnotationTypes';
-import { ModalityUnitOptions } from '../../utilities/getModalityUnit';
 declare class ProbeTool extends AnnotationTool {
     static toolName: any;
     touchDragCallback: any;
@@ -30,7 +29,6 @@ declare class ProbeTool extends AnnotationTool {
     _activateModify: (element: any) => void;
     _deactivateModify: (element: any) => void;
     renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: SVGDrawingHelper) => boolean;
-    _getTextLines(data: any, targetId: string): string[] | undefined;
-    _calculateCachedStats(annotation: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: ModalityUnitOptions): any;
+    _calculateCachedStats(annotation: any, renderingEngine: any, enabledElement: any): any;
 }
 export default ProbeTool;

package/dist/esm/tools/annotation/ProbeTool.js

@@ -17,6 +17,7 @@ class ProbeTool extends AnnotationTool {
         configuration: {
             shadow: true,
             preventHandleOutsideImage: false,
+            getTextLines: defaultGetTextLines,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -169,20 +170,17 @@ class ProbeTool extends AnnotationTool {
                 const canvasCoordinates = viewport.worldToCanvas(point);
                 styleSpecifier.annotationUID = annotationUID;
                 const color = this.getStyle('color', styleSpecifier, annotation);
-                const modalityUnitOptions = {
-                    isPreScaled: isViewportPreScaled(viewport, targetId),
-                    isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
-                };
-                if (!data.cachedStats[targetId]) {
+                if (!data.cachedStats[targetId] ||
+                    data.cachedStats[targetId].value == null) {
                     data.cachedStats[targetId] = {
                         Modality: null,
                         index: null,
                         value: null,
                     };
-                    this._calculateCachedStats(annotation, renderingEngine, enabledElement, modalityUnitOptions);
+                    this._calculateCachedStats(annotation, renderingEngine, enabledElement);
                 }
                 else if (annotation.invalidated) {
-                    this._calculateCachedStats(annotation, renderingEngine, enabledElement, modalityUnitOptions);
+                    this._calculateCachedStats(annotation, renderingEngine, enabledElement);
                     if (viewport instanceof VolumeViewport) {
                         const { referencedImageId } = annotation.metadata;
                         for (const targetId in data.cachedStats) {
@@ -208,14 +206,18 @@ class ProbeTool extends AnnotationTool {
                 const handleGroupUID = '0';
                 drawHandlesSvg(svgDrawingHelper, annotationUID, handleGroupUID, [canvasCoordinates], { color });
                 renderStatus = true;
-                const textLines = this._getTextLines(data, targetId);
+                const options = this.getLinkedTextBoxStyle(styleSpecifier, annotation);
+                if (!options.visibility) {
+                    continue;
+                }
+                const textLines = this.configuration.getTextLines(data, targetId);
                 if (textLines) {
                     const textCanvasCoordinates = [
                         canvasCoordinates[0] + 6,
                         canvasCoordinates[1] - 6,
                     ];
                     const textUID = '0';
-                    drawTextBoxSvg(svgDrawingHelper, annotationUID, textUID, textLines, [textCanvasCoordinates[0], textCanvasCoordinates[1]], this.getLinkedTextBoxStyle(styleSpecifier, annotation));
+                    drawTextBoxSvg(svgDrawingHelper, annotationUID, textUID, textLines, [textCanvasCoordinates[0], textCanvasCoordinates[1]], options);
                 }
             }
             return renderStatus;
@@ -252,25 +254,18 @@ class ProbeTool extends AnnotationTool {
         triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);
         evt.preventDefault();
     }
-    _getTextLines(data, targetId) {
-        const cachedVolumeStats = data.cachedStats[targetId];
-        const { index, value, modalityUnit } = cachedVolumeStats;
-        if (value === undefined) {
-            return;
-        }
-        const textLines = [];
-        textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
-        textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
-        return textLines;
-    }
-    _calculateCachedStats(annotation, renderingEngine, enabledElement, modalityUnitOptions) {
+    _calculateCachedStats(annotation, renderingEngine, enabledElement) {
         const data = annotation.data;
-        const { viewportId, renderingEngineId } = enabledElement;
+        const { viewportId, renderingEngineId, viewport } = enabledElement;
         const worldPos = data.handles.points[0];
         const { cachedStats } = data;
         const targetIds = Object.keys(cachedStats);
         for (let i = 0; i < targetIds.length; i++) {
             const targetId = targetIds[i];
+            const modalityUnitOptions = {
+                isPreScaled: isViewportPreScaled(viewport, targetId),
+                isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
+            };
             const image = this.getTargetIdImage(targetId, renderingEngine);
             if (!image) {
                 continue;
@@ -321,6 +316,17 @@ class ProbeTool extends AnnotationTool {
         return cachedStats;
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { index, value, modalityUnit } = cachedVolumeStats;
+    if (value === undefined) {
+        return;
+    }
+    const textLines = [];
+    textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
+    textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
+    return textLines;
+}
 ProbeTool.toolName = 'Probe';
 export default ProbeTool;
 //# sourceMappingURL=ProbeTool.js.map

package/dist/esm/tools/annotation/ProbeTool.js.map

@@ -1 +1 @@
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package/dist/esm/tools/annotation/RectangleROITool.d.ts

@@ -34,8 +34,7 @@ declare class RectangleROITool extends AnnotationTool {
         width: number;
         height: number;
     };
-    _getTextLines: (data: any, targetId: string) => string[] | undefined;
-    _calculateCachedStats: (annotation: any, viewPlaneNormal: any, viewUp: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: any) => any;
+    _calculateCachedStats: (annotation: any, viewPlaneNormal: any, viewUp: any, renderingEngine: any, enabledElement: any) => any;
     _isInsideVolume: (index1: any, index2: any, dimensions: any) => boolean;
 }
 export default RectangleROITool;