npm - @cornerstonejs/tools - Versions diffs - 2.0.0-beta.1 → 2.0.0-beta.3 - Mend

@cornerstonejs/tools 2.0.0-beta.1 → 2.0.0-beta.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (565) hide show

package/dist/cjs/tools/annotation/LengthTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/cjs/tools/annotation/PlanarFreehandROITool.d.ts CHANGED Viewed

@@ -2,7 +2,6 @@ import type { Types } from '@cornerstonejs/core';
 import { AnnotationTool } from '../base';
 import { EventTypes, ToolHandle, Annotations, PublicToolProps, ToolProps, SVGDrawingHelper } from '../../types';
 import { PlanarFreehandROIAnnotation } from '../../types/ToolSpecificAnnotationTypes';
-import { ModalityUnitOptions } from '../../utilities/getModalityUnit';
 declare class PlanarFreehandROITool extends AnnotationTool {
     static toolName: any;
     touchDragCallback: any;
@@ -34,8 +33,7 @@ declare class PlanarFreehandROITool extends AnnotationTool {
     filterInteractableAnnotationsForElement(element: HTMLDivElement, annotations: Annotations): Annotations | undefined;
     private filterAnnotationsWithinSlice;
     renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: SVGDrawingHelper) => boolean;
-    _calculateCachedStats: (annotation: any, viewport: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: ModalityUnitOptions) => any;
+    _calculateCachedStats: (annotation: any, viewport: any, renderingEngine: any, enabledElement: any) => any;
     _renderStats: (annotation: any, viewport: any, enabledElement: any, svgDrawingHelper: any) => void;
-    _getTextLines: (data: any, targetId: string) => string[];
 }
 export default PlanarFreehandROITool;

package/dist/cjs/tools/annotation/PlanarFreehandROITool.js CHANGED Viewed

@@ -27,6 +27,7 @@ const getIntersectionWithPolyline_1 = require("../../utilities/math/polyline/get
 const pointInShapeCallback_1 = __importDefault(require("../../utilities/pointInShapeCallback"));
 const isViewportPreScaled_1 = require("../../utilities/viewport/isViewportPreScaled");
 const getModalityUnit_1 = require("../../utilities/getModalityUnit");
+const basic_1 = require("../../utilities/math/basic");
 const { pointCanProjectOnLine } = math_1.polyline;
 const { EPSILON } = core_1.CONSTANTS;
 const PARALLEL_THRESHOLD = 1 - EPSILON;
@@ -51,6 +52,8 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                 knotsRatioPercentageOnEdit: 40,
             },
             calculateStats: false,
+            getTextLines: defaultGetTextLines,
+            statsCalculator: basic_1.BasicStatsCalculator,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -221,22 +224,20 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                 });
                 renderStatus = true;
             }
-            if (!this.configuration.calculateStats)
+            if (!this.configuration.calculateStats) {
                 return;
+            }
             annotations.forEach((annotation) => {
                 var _a, _b, _c;
                 const activeAnnotationUID = (_a = this.commonData) === null || _a === void 0 ? void 0 : _a.annotation.annotationUID;
                 if (annotation.annotationUID === activeAnnotationUID &&
-                    !((_b = this.commonData) === null || _b === void 0 ? void 0 : _b.movingTextBox))
+                    !((_b = this.commonData) === null || _b === void 0 ? void 0 : _b.movingTextBox)) {
                     return;
-                const modalityUnitOptions = {
-                    isPreScaled: (0, isViewportPreScaled_1.isViewportPreScaled)(viewport, targetId),
-                    isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
-                };
+                }
                 if (!((_c = this.commonData) === null || _c === void 0 ? void 0 : _c.movingTextBox)) {
                     const { data } = annotation;
                     if (!data.cachedStats[targetId] ||
-                        data.cachedStats[targetId].areaUnit === undefined) {
+                        data.cachedStats[targetId].areaUnit == null) {
                         data.cachedStats[targetId] = {
                             Modality: null,
                             area: null,
@@ -245,17 +246,18 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                             stdDev: null,
                             areaUnit: null,
                         };
-                        this._calculateCachedStats(annotation, viewport, renderingEngine, enabledElement, modalityUnitOptions);
+                        this._calculateCachedStats(annotation, viewport, renderingEngine, enabledElement);
                     }
                     else if (annotation.invalidated) {
-                        this._throttledCalculateCachedStats(annotation, viewport, renderingEngine, enabledElement, modalityUnitOptions);
+                        this._throttledCalculateCachedStats(annotation, viewport, renderingEngine, enabledElement);
                     }
                 }
                 this._renderStats(annotation, viewport, enabledElement, svgDrawingHelper);
             });
             return renderStatus;
         };
-        this._calculateCachedStats = (annotation, viewport, renderingEngine, enabledElement, modalityUnitOptions) => {
+        this._calculateCachedStats = (annotation, viewport, renderingEngine, enabledElement) => {
+            var _a, _b, _c;
             const data = annotation.data;
             const { cachedStats, polyline: points } = data;
             const targetIds = Object.keys(cachedStats);
@@ -267,8 +269,21 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                 }
                 const { imageData, metadata } = image;
                 const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+                const canvasPoint = canvasCoordinates[0];
+                const originalWorldPoint = viewport.canvasToWorld(canvasPoint);
+                const deltaXPoint = viewport.canvasToWorld([
+                    canvasPoint[0] + 1,
+                    canvasPoint[1],
+                ]);
+                const deltaYPoint = viewport.canvasToWorld([
+                    canvasPoint[0],
+                    canvasPoint[1] + 1,
+                ]);
+                const deltaInX = gl_matrix_1.vec3.distance(originalWorldPoint, deltaXPoint);
+                const deltaInY = gl_matrix_1.vec3.distance(originalWorldPoint, deltaYPoint);
                 const scale = (0, getCalibratedUnits_1.getCalibratedScale)(image);
-                const area = math_1.polyline.calculateAreaOfPoints(canvasCoordinates) / scale / scale;
+                let area = math_1.polyline.calculateAreaOfPoints(canvasCoordinates) / scale / scale;
+                area *= deltaInX * deltaInY;
                 const worldPosIndex = core_1.utilities.transformWorldToIndex(imageData, points[0]);
                 worldPosIndex[0] = Math.floor(worldPosIndex[0]);
                 worldPosIndex[1] = Math.floor(worldPosIndex[1]);
@@ -307,22 +322,10 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                 ];
                 const worldPosEnd = imageData.indexToWorld([iMax, jMax, kMax]);
                 const canvasPosEnd = viewport.worldToCanvas(worldPosEnd);
-                let count = 0;
-                let sum = 0;
-                let sumSquares = 0;
-                let max = -Infinity;
-                const statCalculator = ({ value: newValue }) => {
-                    if (newValue > max) {
-                        max = newValue;
-                    }
-                    sum += newValue;
-                    sumSquares += Math.pow(newValue, 2);
-                    count += 1;
-                };
                 let curRow = 0;
                 let intersections = [];
                 let intersectionCounter = 0;
-                (0, pointInShapeCallback_1.default)(imageData, (pointLPS, pointIJK) => {
+                const pointsInShape = (0, pointInShapeCallback_1.default)(imageData, (pointLPS, pointIJK) => {
                     let result = true;
                     const point = viewport.worldToCanvas(pointLPS);
                     if (point[1] != curRow) {
@@ -347,17 +350,21 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                         result = false;
                     }
                     return result;
-                }, statCalculator, boundsIJK);
-                const mean = sum / count;
-                let stdDev = sumSquares / count - Math.pow(mean, 2);
-                stdDev = Math.sqrt(stdDev);
+                }, this.configuration.statsCalculator.statsCallback, boundsIJK);
+                const modalityUnitOptions = {
+                    isPreScaled: (0, isViewportPreScaled_1.isViewportPreScaled)(viewport, targetId),
+                    isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
+                };
                 const modalityUnit = (0, getModalityUnit_1.getModalityUnit)(metadata.Modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                const stats = this.configuration.statsCalculator.getStatistics();
                 cachedStats[targetId] = {
                     Modality: metadata.Modality,
                     area,
-                    mean,
-                    max,
-                    stdDev,
+                    mean: (_a = stats[1]) === null || _a === void 0 ? void 0 : _a.value,
+                    max: (_b = stats[0]) === null || _b === void 0 ? void 0 : _b.value,
+                    stdDev: (_c = stats[3]) === null || _c === void 0 ? void 0 : _c.value,
+                    statsArray: stats,
+                    pointsInShape: pointsInShape,
                     areaUnit: (0, getCalibratedUnits_1.getCalibratedAreaUnits)(null, image),
                     modalityUnit,
                 };
@@ -370,9 +377,19 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
             var _a;
             const data = annotation.data;
             const targetId = this.getTargetId(viewport);
-            const textLines = this._getTextLines(data, targetId);
-            if (!textLines || textLines.length === 0)
+            const styleSpecifier = {
+                toolGroupId: this.toolGroupId,
+                toolName: this.getToolName(),
+                viewportId: enabledElement.viewport.id,
+            };
+            const options = this.getLinkedTextBoxStyle(styleSpecifier, annotation);
+            if (!options.visibility) {
                 return;
+            }
+            const textLines = this.configuration.getTextLines(data, targetId);
+            if (!textLines || textLines.length === 0) {
+                return;
+            }
             const canvasCoordinates = data.polyline.map((p) => viewport.worldToCanvas(p));
             if (!data.handles.textBox.hasMoved) {
                 const canvasTextBoxCoords = (0, drawing_1.getTextBoxCoordsCanvas)(canvasCoordinates);
@@ -380,13 +397,8 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                     viewport.canvasToWorld(canvasTextBoxCoords);
             }
             const textBoxPosition = viewport.worldToCanvas(data.handles.textBox.worldPosition);
-            const styleSpecifier = {
-                toolGroupId: this.toolGroupId,
-                toolName: this.getToolName(),
-                viewportId: enabledElement.viewport.id,
-            };
             const textBoxUID = '1';
-            const boundingBox = (0, drawingSvg_1.drawLinkedTextBox)(svgDrawingHelper, (_a = annotation.annotationUID) !== null && _a !== void 0 ? _a : '', textBoxUID, textLines, textBoxPosition, canvasCoordinates, {}, this.getLinkedTextBoxStyle(styleSpecifier, annotation));
+            const boundingBox = (0, drawingSvg_1.drawLinkedTextBox)(svgDrawingHelper, (_a = annotation.annotationUID) !== null && _a !== void 0 ? _a : '', textBoxUID, textLines, textBoxPosition, canvasCoordinates, {}, options);
             const { x: left, y: top, width, height } = boundingBox;
             data.handles.textBox.worldBoundingBox = {
                 topLeft: viewport.canvasToWorld([left, top]),
@@ -395,27 +407,6 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                 bottomRight: viewport.canvasToWorld([left + width, top + height]),
             };
         };
-        this._getTextLines = (data, targetId) => {
-            const cachedVolumeStats = data.cachedStats[targetId];
-            const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats;
-            const textLines = [];
-            if (area) {
-                const areaLine = isEmptyArea
-                    ? `Area: Oblique not supported`
-                    : `Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`;
-                textLines.push(areaLine);
-            }
-            if (mean) {
-                textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
-            }
-            if (max) {
-                textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
-            }
-            if (stdDev) {
-                textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
-            }
-            return textLines;
-        };
         (0, drawLoop_1.default)(this);
         (0, editLoopCommon_1.default)(this);
         (0, closedContourEditLoop_1.default)(this);
@@ -474,6 +465,27 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
         return annotationsWithinSlice;
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats;
+    const textLines = [];
+    if (area) {
+        const areaLine = isEmptyArea
+            ? `Area: Oblique not supported`
+            : `Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`;
+        textLines.push(areaLine);
+    }
+    if (mean) {
+        textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
+    }
+    if (max) {
+        textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
+    }
+    if (stdDev) {
+        textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
+    }
+    return textLines;
+}
 PlanarFreehandROITool.toolName = 'PlanarFreehandROI';
 exports.default = PlanarFreehandROITool;
 //# sourceMappingURL=PlanarFreehandROITool.js.map

package/dist/cjs/tools/annotation/PlanarFreehandROITool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/cjs/tools/annotation/ProbeTool.d.ts CHANGED Viewed

@@ -2,7 +2,6 @@ import type { Types } from '@cornerstonejs/core';
 import { AnnotationTool } from '../base';
 import { EventTypes, ToolHandle, PublicToolProps, ToolProps, SVGDrawingHelper } from '../../types';
 import { ProbeAnnotation } from '../../types/ToolSpecificAnnotationTypes';
-import { ModalityUnitOptions } from '../../utilities/getModalityUnit';
 declare class ProbeTool extends AnnotationTool {
     static toolName: any;
     touchDragCallback: any;
@@ -30,7 +29,6 @@ declare class ProbeTool extends AnnotationTool {
     _activateModify: (element: any) => void;
     _deactivateModify: (element: any) => void;
     renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: SVGDrawingHelper) => boolean;
-    _getTextLines(data: any, targetId: string): string[] | undefined;
-    _calculateCachedStats(annotation: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: ModalityUnitOptions): any;
+    _calculateCachedStats(annotation: any, renderingEngine: any, enabledElement: any): any;
 }
 export default ProbeTool;

package/dist/cjs/tools/annotation/ProbeTool.js CHANGED Viewed

@@ -22,6 +22,7 @@ class ProbeTool extends base_1.AnnotationTool {
         configuration: {
             shadow: true,
             preventHandleOutsideImage: false,
+            getTextLines: defaultGetTextLines,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -174,20 +175,17 @@ class ProbeTool extends base_1.AnnotationTool {
                 const canvasCoordinates = viewport.worldToCanvas(point);
                 styleSpecifier.annotationUID = annotationUID;
                 const color = this.getStyle('color', styleSpecifier, annotation);
-                const modalityUnitOptions = {
-                    isPreScaled: (0, isViewportPreScaled_1.isViewportPreScaled)(viewport, targetId),
-                    isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
-                };
-                if (!data.cachedStats[targetId]) {
+                if (!data.cachedStats[targetId] ||
+                    data.cachedStats[targetId].value == null) {
                     data.cachedStats[targetId] = {
                         Modality: null,
                         index: null,
                         value: null,
                     };
-                    this._calculateCachedStats(annotation, renderingEngine, enabledElement, modalityUnitOptions);
+                    this._calculateCachedStats(annotation, renderingEngine, enabledElement);
                 }
                 else if (annotation.invalidated) {
-                    this._calculateCachedStats(annotation, renderingEngine, enabledElement, modalityUnitOptions);
+                    this._calculateCachedStats(annotation, renderingEngine, enabledElement);
                     if (viewport instanceof core_1.VolumeViewport) {
                         const { referencedImageId } = annotation.metadata;
                         for (const targetId in data.cachedStats) {
@@ -213,14 +211,18 @@ class ProbeTool extends base_1.AnnotationTool {
                 const handleGroupUID = '0';
                 (0, drawingSvg_1.drawHandles)(svgDrawingHelper, annotationUID, handleGroupUID, [canvasCoordinates], { color });
                 renderStatus = true;
-                const textLines = this._getTextLines(data, targetId);
+                const options = this.getLinkedTextBoxStyle(styleSpecifier, annotation);
+                if (!options.visibility) {
+                    continue;
+                }
+                const textLines = this.configuration.getTextLines(data, targetId);
                 if (textLines) {
                     const textCanvasCoordinates = [
                         canvasCoordinates[0] + 6,
                         canvasCoordinates[1] - 6,
                     ];
                     const textUID = '0';
-                    (0, drawingSvg_1.drawTextBox)(svgDrawingHelper, annotationUID, textUID, textLines, [textCanvasCoordinates[0], textCanvasCoordinates[1]], this.getLinkedTextBoxStyle(styleSpecifier, annotation));
+                    (0, drawingSvg_1.drawTextBox)(svgDrawingHelper, annotationUID, textUID, textLines, [textCanvasCoordinates[0], textCanvasCoordinates[1]], options);
                 }
             }
             return renderStatus;
@@ -257,25 +259,18 @@ class ProbeTool extends base_1.AnnotationTool {
         (0, triggerAnnotationRenderForViewportIds_1.default)(renderingEngine, viewportIdsToRender);
         evt.preventDefault();
     }
-    _getTextLines(data, targetId) {
-        const cachedVolumeStats = data.cachedStats[targetId];
-        const { index, value, modalityUnit } = cachedVolumeStats;
-        if (value === undefined) {
-            return;
-        }
-        const textLines = [];
-        textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
-        textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
-        return textLines;
-    }
-    _calculateCachedStats(annotation, renderingEngine, enabledElement, modalityUnitOptions) {
+    _calculateCachedStats(annotation, renderingEngine, enabledElement) {
         const data = annotation.data;
-        const { viewportId, renderingEngineId } = enabledElement;
+        const { viewportId, renderingEngineId, viewport } = enabledElement;
         const worldPos = data.handles.points[0];
         const { cachedStats } = data;
         const targetIds = Object.keys(cachedStats);
         for (let i = 0; i < targetIds.length; i++) {
             const targetId = targetIds[i];
+            const modalityUnitOptions = {
+                isPreScaled: (0, isViewportPreScaled_1.isViewportPreScaled)(viewport, targetId),
+                isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
+            };
             const image = this.getTargetIdImage(targetId, renderingEngine);
             if (!image) {
                 continue;
@@ -326,6 +321,17 @@ class ProbeTool extends base_1.AnnotationTool {
         return cachedStats;
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { index, value, modalityUnit } = cachedVolumeStats;
+    if (value === undefined) {
+        return;
+    }
+    const textLines = [];
+    textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
+    textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
+    return textLines;
+}
 ProbeTool.toolName = 'Probe';
 exports.default = ProbeTool;
 //# sourceMappingURL=ProbeTool.js.map

package/dist/cjs/tools/annotation/ProbeTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/cjs/tools/annotation/RectangleROITool.d.ts CHANGED Viewed

@@ -34,8 +34,7 @@ declare class RectangleROITool extends AnnotationTool {
         width: number;
         height: number;
     };
-    _getTextLines: (data: any, targetId: string) => string[] | undefined;
-    _calculateCachedStats: (annotation: any, viewPlaneNormal: any, viewUp: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: any) => any;
+    _calculateCachedStats: (annotation: any, viewPlaneNormal: any, viewUp: any, renderingEngine: any, enabledElement: any) => any;
     _isInsideVolume: (index1: any, index2: any, dimensions: any) => boolean;
 }
 export default RectangleROITool;