npm - @cornerstonejs/tools - Versions diffs - 2.0.0-beta.1 → 2.0.0-beta.3 - Mend

@cornerstonejs/tools 2.0.0-beta.1 → 2.0.0-beta.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (565) hide show

package/dist/cjs/tools/annotation/RectangleROITool.js CHANGED Viewed

@@ -45,6 +45,8 @@ const elementCursor_1 = require("../../cursors/elementCursor");
 const triggerAnnotationRenderForViewportIds_1 = __importDefault(require("../../utilities/triggerAnnotationRenderForViewportIds"));
 const getModalityUnit_1 = require("../../utilities/getModalityUnit");
 const isViewportPreScaled_1 = require("../../utilities/viewport/isViewportPreScaled");
+const utilities_1 = require("../../utilities/");
+const basic_1 = require("../../utilities/math/basic");
 const { transformWorldToIndex } = core_1.utilities;
 class RectangleROITool extends base_1.AnnotationTool {
     constructor(toolProps = {}, defaultToolProps = {
@@ -52,6 +54,8 @@ class RectangleROITool extends base_1.AnnotationTool {
         configuration: {
             shadow: true,
             preventHandleOutsideImage: false,
+            getTextLines: defaultGetTextLines,
+            statsCalculator: basic_1.BasicStatsCalculator,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -378,12 +382,8 @@ class RectangleROITool extends base_1.AnnotationTool {
                 const lineDash = this.getStyle('lineDash', styleSpecifier, annotation);
                 const color = this.getStyle('color', styleSpecifier, annotation);
                 const { viewPlaneNormal, viewUp } = viewport.getCamera();
-                const modalityUnitOptions = {
-                    isPreScaled: (0, isViewportPreScaled_1.isViewportPreScaled)(viewport, targetId),
-                    isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
-                };
                 if (!data.cachedStats[targetId] ||
-                    data.cachedStats[targetId].areaUnit === undefined) {
+                    data.cachedStats[targetId].areaUnit == null) {
                     data.cachedStats[targetId] = {
                         Modality: null,
                         area: null,
@@ -392,10 +392,10 @@ class RectangleROITool extends base_1.AnnotationTool {
                         stdDev: null,
                         areaUnit: null,
                     };
-                    this._calculateCachedStats(annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement, modalityUnitOptions);
+                    this._calculateCachedStats(annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement);
                 }
                 else if (annotation.invalidated) {
-                    this._throttledCalculateCachedStats(annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement, modalityUnitOptions);
+                    this._throttledCalculateCachedStats(annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement);
                     if (viewport instanceof core_1.VolumeViewport) {
                         const { referencedImageId } = annotation.metadata;
                         for (const targetId in data.cachedStats) {
@@ -441,7 +441,21 @@ class RectangleROITool extends base_1.AnnotationTool {
                     lineWidth,
                 }, dataId);
                 renderStatus = true;
-                const textLines = this._getTextLines(data, targetId);
+                const options = this.getLinkedTextBoxStyle(styleSpecifier, annotation);
+                if (!options.visibility) {
+                    data.handles.textBox = {
+                        hasMoved: false,
+                        worldPosition: [0, 0, 0],
+                        worldBoundingBox: {
+                            topLeft: [0, 0, 0],
+                            topRight: [0, 0, 0],
+                            bottomLeft: [0, 0, 0],
+                            bottomRight: [0, 0, 0],
+                        },
+                    };
+                    continue;
+                }
+                const textLines = this.configuration.getTextLines(data, targetId);
                 if (!textLines || textLines.length === 0) {
                     continue;
                 }
@@ -452,7 +466,7 @@ class RectangleROITool extends base_1.AnnotationTool {
                 }
                 const textBoxPosition = viewport.worldToCanvas(data.handles.textBox.worldPosition);
                 const textBoxUID = '1';
-                const boundingBox = (0, drawingSvg_1.drawLinkedTextBox)(svgDrawingHelper, annotationUID, textBoxUID, textLines, textBoxPosition, canvasCoordinates, {}, this.getLinkedTextBoxStyle(styleSpecifier, annotation));
+                const boundingBox = (0, drawingSvg_1.drawLinkedTextBox)(svgDrawingHelper, annotationUID, textBoxUID, textLines, textBoxPosition, canvasCoordinates, {}, options);
                 const { x: left, y: top, width, height } = boundingBox;
                 data.handles.textBox.worldBoundingBox = {
                     topLeft: viewport.canvasToWorld([left, top]),
@@ -472,22 +486,10 @@ class RectangleROITool extends base_1.AnnotationTool {
                 height: Math.abs(point0[1] - point1[1]),
             };
         };
-        this._getTextLines = (data, targetId) => {
-            const cachedVolumeStats = data.cachedStats[targetId];
-            const { area, mean, max, stdDev, areaUnit, modalityUnit } = cachedVolumeStats;
-            if (mean === undefined) {
-                return;
-            }
-            const textLines = [];
-            textLines.push(`Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`);
-            textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
-            textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
-            textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
-            return textLines;
-        };
-        this._calculateCachedStats = (annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement, modalityUnitOptions) => {
+        this._calculateCachedStats = (annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement) => {
+            var _a, _b, _c;
             const { data } = annotation;
-            const { viewportId, renderingEngineId } = enabledElement;
+            const { viewportId, renderingEngineId, viewport } = enabledElement;
             const worldPos1 = data.handles.points[0];
             const worldPos2 = data.handles.points[3];
             const { cachedStats } = data;
@@ -516,46 +518,29 @@ class RectangleROITool extends base_1.AnnotationTool {
                     const jMax = Math.max(worldPos1Index[1], worldPos2Index[1]);
                     const kMin = Math.min(worldPos1Index[2], worldPos2Index[2]);
                     const kMax = Math.max(worldPos1Index[2], worldPos2Index[2]);
+                    const boundsIJK = [
+                        [iMin, iMax],
+                        [jMin, jMax],
+                        [kMin, kMax],
+                    ];
                     const { worldWidth, worldHeight } = (0, getWorldWidthAndHeightFromCorners_1.default)(viewPlaneNormal, viewUp, worldPos1, worldPos2);
                     const scale = (0, getCalibratedUnits_1.getCalibratedScale)(image);
                     const area = Math.abs(worldWidth * worldHeight) / (scale * scale);
-                    let count = 0;
-                    let mean = 0;
-                    let stdDev = 0;
-                    let max = -Infinity;
-                    const yMultiple = dimensions[0];
-                    const zMultiple = dimensions[0] * dimensions[1];
-                    for (let k = kMin; k <= kMax; k++) {
-                        for (let j = jMin; j <= jMax; j++) {
-                            for (let i = iMin; i <= iMax; i++) {
-                                const value = scalarData[k * zMultiple + j * yMultiple + i];
-                                if (value > max) {
-                                    max = value;
-                                }
-                                count++;
-                                mean += value;
-                            }
-                        }
-                    }
-                    mean /= count;
-                    for (let k = kMin; k <= kMax; k++) {
-                        for (let j = jMin; j <= jMax; j++) {
-                            for (let i = iMin; i <= iMax; i++) {
-                                const value = scalarData[k * zMultiple + j * yMultiple + i];
-                                const valueMinusMean = value - mean;
-                                stdDev += valueMinusMean * valueMinusMean;
-                            }
-                        }
-                    }
-                    stdDev /= count;
-                    stdDev = Math.sqrt(stdDev);
+                    const modalityUnitOptions = {
+                        isPreScaled: (0, isViewportPreScaled_1.isViewportPreScaled)(viewport, targetId),
+                        isSuvScaled: this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId),
+                    };
                     const modalityUnit = (0, getModalityUnit_1.getModalityUnit)(metadata.Modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                    const pointsInShape = (0, utilities_1.pointInShapeCallback)(imageData, () => true, this.configuration.statsCalculator.statsCallback, boundsIJK);
+                    const stats = this.configuration.statsCalculator.getStatistics();
                     cachedStats[targetId] = {
                         Modality: metadata.Modality,
                         area,
-                        mean,
-                        stdDev,
-                        max,
+                        mean: (_a = stats[1]) === null || _a === void 0 ? void 0 : _a.value,
+                        stdDev: (_b = stats[2]) === null || _b === void 0 ? void 0 : _b.value,
+                        max: (_c = stats[0]) === null || _c === void 0 ? void 0 : _c.value,
+                        statsArray: stats,
+                        pointsInShape: pointsInShape,
                         areaUnit: (0, getCalibratedUnits_1.getCalibratedAreaUnits)(null, image),
                         modalityUnit,
                     };
@@ -584,6 +569,19 @@ class RectangleROITool extends base_1.AnnotationTool {
         this._throttledCalculateCachedStats = (0, throttle_1.default)(this._calculateCachedStats, 100, { trailing: true });
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { area, mean, max, stdDev, areaUnit, modalityUnit } = cachedVolumeStats;
+    if (mean === undefined) {
+        return;
+    }
+    const textLines = [];
+    textLines.push(`Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`);
+    textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
+    textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
+    textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
+    return textLines;
+}
 RectangleROITool.toolName = 'RectangleROI';
 exports.default = RectangleROITool;
 //# sourceMappingURL=RectangleROITool.js.map

package/dist/cjs/tools/annotation/RectangleROITool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/cjs/tools/base/AnnotationDisplayTool.js CHANGED Viewed

@@ -25,6 +25,10 @@ class AnnotationDisplayTool extends BaseTool_1.default {
                     return;
                 }
                 toolSpecificAnnotations.forEach((annotation) => {
+                    var _a;
+                    if (!((_a = annotation.metadata) === null || _a === void 0 ? void 0 : _a.referencedImageId)) {
+                        return;
+                    }
                     const referencedImageURI = core_1.utilities.imageIdToURI(annotation.metadata.referencedImageId);
                     if (referencedImageURI === imageURI) {
                         annotation.invalidated = true;

package/dist/cjs/tools/base/AnnotationDisplayTool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/cjs/tools/base/AnnotationTool.d.ts CHANGED Viewed

@@ -1,13 +1,14 @@
 import type { Types } from '@cornerstonejs/core';
 import AnnotationDisplayTool from './AnnotationDisplayTool';
-import { Annotation, Annotations, EventTypes, ToolHandle, InteractionTypes } from '../../types';
+import { Annotation, Annotations, EventTypes, ToolHandle, InteractionTypes, ToolProps, PublicToolProps } from '../../types';
 import { StyleSpecifier } from '../../types/AnnotationStyle';
 declare abstract class AnnotationTool extends AnnotationDisplayTool {
     static toolName: any;
+    constructor(toolProps: PublicToolProps, defaultToolProps: ToolProps);
     abstract addNewAnnotation(evt: EventTypes.InteractionEventType, interactionType: InteractionTypes): Annotation;
     abstract cancel(element: HTMLDivElement): any;
     abstract handleSelectedCallback(evt: EventTypes.InteractionEventType, annotation: Annotation, handle: ToolHandle, interactionType: InteractionTypes): void;
-    abstract toolSelectedCallback(evt: EventTypes.InteractionEventType, annotation: Annotation, interactionType: InteractionTypes): void;
+    abstract toolSelectedCallback(evt: EventTypes.InteractionEventType, annotation: Annotation, interactionType: InteractionTypes, canvasCoords?: Types.Point2): void;
     abstract isPointNearTool(element: HTMLDivElement, annotation: Annotation, canvasCoords: Types.Point2, proximity: number, interactionType: string): boolean;
     mouseMoveCallback: (evt: EventTypes.MouseMoveEventType, filteredAnnotations?: Annotations) => boolean;
     getHandleNearImagePoint(element: HTMLDivElement, annotation: Annotation, canvasCoords: Types.Point2, proximity: number): ToolHandle | undefined;

package/dist/cjs/tools/base/AnnotationTool.js CHANGED Viewed

@@ -9,8 +9,9 @@ const AnnotationDisplayTool_1 = __importDefault(require("./AnnotationDisplayTool
 const annotationLocking_1 = require("../../stateManagement/annotation/annotationLocking");
 const annotationVisibility_1 = require("../../stateManagement/annotation/annotationVisibility");
 class AnnotationTool extends AnnotationDisplayTool_1.default {
-    constructor() {
-        super(...arguments);
+    constructor(toolProps, defaultToolProps) {
+        var _a, _b;
+        super(toolProps, defaultToolProps);
         this.mouseMoveCallback = (evt, filteredAnnotations) => {
             if (!filteredAnnotations) {
                 return false;
@@ -41,26 +42,35 @@ class AnnotationTool extends AnnotationDisplayTool_1.default {
             }
             return annotationsNeedToBeRedrawn;
         };
+        if ((_a = toolProps.configuration) === null || _a === void 0 ? void 0 : _a.getTextLines) {
+            this.configuration.getTextLines = toolProps.configuration.getTextLines;
+        }
+        if ((_b = toolProps.configuration) === null || _b === void 0 ? void 0 : _b.statsCalculator) {
+            this.configuration.statsCalculator =
+                toolProps.configuration.statsCalculator;
+        }
     }
     getHandleNearImagePoint(element, annotation, canvasCoords, proximity) {
         const enabledElement = (0, core_1.getEnabledElement)(element);
         const { viewport } = enabledElement;
         const { data } = annotation;
         const { points, textBox } = data.handles;
-        const { worldBoundingBox } = textBox;
-        if (worldBoundingBox) {
-            const canvasBoundingBox = {
-                topLeft: viewport.worldToCanvas(worldBoundingBox.topLeft),
-                topRight: viewport.worldToCanvas(worldBoundingBox.topRight),
-                bottomLeft: viewport.worldToCanvas(worldBoundingBox.bottomLeft),
-                bottomRight: viewport.worldToCanvas(worldBoundingBox.bottomRight),
-            };
-            if (canvasCoords[0] >= canvasBoundingBox.topLeft[0] &&
-                canvasCoords[0] <= canvasBoundingBox.bottomRight[0] &&
-                canvasCoords[1] >= canvasBoundingBox.topLeft[1] &&
-                canvasCoords[1] <= canvasBoundingBox.bottomRight[1]) {
-                data.handles.activeHandleIndex = null;
-                return textBox;
+        if (textBox) {
+            const { worldBoundingBox } = textBox;
+            if (worldBoundingBox) {
+                const canvasBoundingBox = {
+                    topLeft: viewport.worldToCanvas(worldBoundingBox.topLeft),
+                    topRight: viewport.worldToCanvas(worldBoundingBox.topRight),
+                    bottomLeft: viewport.worldToCanvas(worldBoundingBox.bottomLeft),
+                    bottomRight: viewport.worldToCanvas(worldBoundingBox.bottomRight),
+                };
+                if (canvasCoords[0] >= canvasBoundingBox.topLeft[0] &&
+                    canvasCoords[0] <= canvasBoundingBox.bottomRight[0] &&
+                    canvasCoords[1] >= canvasBoundingBox.topLeft[1] &&
+                    canvasCoords[1] <= canvasBoundingBox.bottomRight[1]) {
+                    data.handles.activeHandleIndex = null;
+                    return textBox;
+                }
             }
         }
         for (let i = 0; i < points.length; i++) {
@@ -76,6 +86,7 @@ class AnnotationTool extends AnnotationDisplayTool_1.default {
     }
     getLinkedTextBoxStyle(specifications, annotation) {
         return {
+            visibility: this.getStyle('textBoxVisibility', specifications, annotation),
             fontFamily: this.getStyle('textBoxFontFamily', specifications, annotation),
             fontSize: this.getStyle('textBoxFontSize', specifications, annotation),
             color: this.getStyle('textBoxColor', specifications, annotation),

package/dist/cjs/tools/base/AnnotationTool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/cjs/tools/base/index.d.ts CHANGED Viewed

@@ -1,3 +1,4 @@
 import BaseTool from './BaseTool';
 import AnnotationTool from './AnnotationTool';
-export { BaseTool, AnnotationTool };
+import AnnotationDisplayTool from './AnnotationDisplayTool';
+export { BaseTool, AnnotationTool, AnnotationDisplayTool };

package/dist/cjs/tools/base/index.js CHANGED Viewed

@@ -3,9 +3,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.AnnotationTool = exports.BaseTool = void 0;
+exports.AnnotationDisplayTool = exports.AnnotationTool = exports.BaseTool = void 0;
 const BaseTool_1 = __importDefault(require("./BaseTool"));
 exports.BaseTool = BaseTool_1.default;
 const AnnotationTool_1 = __importDefault(require("./AnnotationTool"));
 exports.AnnotationTool = AnnotationTool_1.default;
+const AnnotationDisplayTool_1 = __importDefault(require("./AnnotationDisplayTool"));
+exports.AnnotationDisplayTool = AnnotationDisplayTool_1.default;
 //# sourceMappingURL=index.js.map

package/dist/cjs/tools/base/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/tools/base/index.ts"],"names":[],"mappings":";;;;;;AAAA,0DAAkC;~~AAGzB~~,~~mBAHF~~,kBAAQ,~~CAGE~~;~~AAFjB~~,sEAA8C;~~AAE3B~~,~~yBAFZ~~,wBAAc,~~CAEY~~"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/tools/base/index.ts"],"names":[],"mappings":";;;;;;AAAA,0DAAkC;AAIzB,mBAJF,kBAAQ,CAIE;AAHjB,sEAA8C;AAG3B,yBAHZ,wBAAc,CAGY;AAFjC,oFAA4D;AAEzB,gCAF5B,+BAAqB,CAE4B"}

package/dist/cjs/tools/displayTools/Contour/contourDisplay.js CHANGED Viewed

@@ -92,6 +92,9 @@ function render(viewport, representationConfig, toolGroupConfig) {
         const segmentation = SegmentationState.getSegmentation(segmentationId);
         const contourData = segmentation.representationData[SegmentationRepresentations_1.default.Contour];
         const { geometryIds } = contourData;
+        if (viewport instanceof core_1.StackViewport) {
+            return;
+        }
         if (!(geometryIds === null || geometryIds === void 0 ? void 0 : geometryIds.length)) {
             console.warn(`No contours found for segmentationId ${segmentationId}. Skipping render.`);
         }

package/dist/cjs/tools/displayTools/Contour/contourDisplay.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.js CHANGED Viewed

@@ -222,7 +222,7 @@ function _needsTransferFunctionUpdate(viewportId, actorUID, segmentIndex, { fill
             renderFill,
             renderOutline,
             outlineWidth,
-            segmentColor,
+            segmentColor: segmentColor.slice(),
             segmentsHidden: new Set(segmentsHidden),
         });
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package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.js.map CHANGED Viewed

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package/dist/cjs/tools/displayTools/Labelmap/removeLabelmapFromElement.js CHANGED Viewed

@@ -4,6 +4,9 @@ const core_1 = require("@cornerstonejs/core");
 function removeLabelmapFromElement(element, segmentationRepresentationUID, removeFromCache = false) {
     const enabledElement = (0, core_1.getEnabledElement)(element);
     const { viewport } = enabledElement;
+    if (viewport instanceof core_1.StackViewport) {
+        return;
+    }
     viewport.removeVolumeActors([
         segmentationRepresentationUID,
     ]);

package/dist/cjs/tools/displayTools/Labelmap/removeLabelmapFromElement.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"removeLabelmapFromElement.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/removeLabelmapFromElement.ts"],"names":[],"mappings":";;AAAA,~~8CAAwD~~;~~AAaxD~~,SAAS,yBAAyB,CAChC,OAAuB,EACvB,6BAAqC,EACrC,eAAe,GAAG,KAAK;IAEvB,MAAM,cAAc,GAAG,IAAA,wBAAiB,EAAC,OAAO,CAAC,CAAC;IAClD,MAAM,EAAE,QAAQ,EAAE,GAAG,cAAc,CAAC;~~IAEnC~~,QAAkC,CAAC,kBAAkB,CAAC;QACrD,6BAA6B;KAC9B,CAAC,CAAC;AACL,CAAC;AAED,kBAAe,yBAAyB,CAAC"}
1	+ {"version":3,"file":"removeLabelmapFromElement.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/removeLabelmapFromElement.ts"],"names":[],"mappings":";;AAAA,8CAAuE;AAavE,SAAS,yBAAyB,CAChC,OAAuB,EACvB,6BAAqC,EACrC,eAAe,GAAG,KAAK;IAEvB,MAAM,cAAc,GAAG,IAAA,wBAAiB,EAAC,OAAO,CAAC,CAAC;IAClD,MAAM,EAAE,QAAQ,EAAE,GAAG,cAAc,CAAC;IAEpC,IAAI,QAAQ,YAAY,oBAAa,EAAE;QAErC,OAAO;KACR;IAEA,QAAkC,CAAC,kBAAkB,CAAC;QACrD,6BAA6B;KAC9B,CAAC,CAAC;AACL,CAAC;AAED,kBAAe,yBAAyB,CAAC"}

package/dist/cjs/tools/displayTools/SegmentationDisplayTool.js CHANGED Viewed

@@ -36,13 +36,12 @@ class SegmentationDisplayTool extends base_1.BaseTool {
             const segmentationRenderList = toolGroupSegmentationRepresentations.map((representation) => {
                 const config = this._getMergedRepresentationsConfig(toolGroupId);
                 const viewportsRenderList = [];
+                const display = representation.type === SegmentationRepresentations_1.default.Labelmap
+                    ? Labelmap_1.labelmapDisplay
+                    : Contour_1.contourDisplay;
                 for (const viewport of toolGroupViewports) {
-                    if (representation.type == SegmentationRepresentations_1.default.Labelmap) {
-                        viewportsRenderList.push(Labelmap_1.labelmapDisplay.render(viewport, representation, config));
-                    }
-                    else if (representation.type == SegmentationRepresentations_1.default.Contour) {
-                        viewportsRenderList.push(Contour_1.contourDisplay.render(viewport, representation, config));
-                    }
+                    const renderedViewport = display.render(viewport, representation, config);
+                    viewportsRenderList.push(renderedViewport);
                 }
                 return viewportsRenderList;
             });

package/dist/cjs/tools/displayTools/SegmentationDisplayTool.js.map CHANGED Viewed

	@@ -1 +1 @@
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