ruby-spark 1.1.0.1-java
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- checksums.yaml +7 -0
- data/.gitignore +37 -0
- data/Gemfile +47 -0
- data/Guardfile +5 -0
- data/LICENSE.txt +22 -0
- data/README.md +252 -0
- data/Rakefile +35 -0
- data/TODO.md +6 -0
- data/benchmark/aggregate.rb +33 -0
- data/benchmark/bisect.rb +88 -0
- data/benchmark/comparison/prepare.sh +18 -0
- data/benchmark/comparison/python.py +156 -0
- data/benchmark/comparison/r.r +69 -0
- data/benchmark/comparison/ruby.rb +167 -0
- data/benchmark/comparison/run-all.sh +160 -0
- data/benchmark/comparison/scala.scala +181 -0
- data/benchmark/custom_marshal.rb +94 -0
- data/benchmark/digest.rb +150 -0
- data/benchmark/enumerator.rb +88 -0
- data/benchmark/serializer.rb +82 -0
- data/benchmark/sort.rb +43 -0
- data/benchmark/sort2.rb +164 -0
- data/benchmark/take.rb +28 -0
- data/bin/ruby-spark +8 -0
- data/example/pi.rb +28 -0
- data/example/website_search.rb +83 -0
- data/ext/ruby_c/extconf.rb +3 -0
- data/ext/ruby_c/murmur.c +158 -0
- data/ext/ruby_c/murmur.h +9 -0
- data/ext/ruby_c/ruby-spark.c +18 -0
- data/ext/ruby_java/Digest.java +36 -0
- data/ext/ruby_java/Murmur2.java +98 -0
- data/ext/ruby_java/RubySparkExtService.java +28 -0
- data/ext/ruby_java/extconf.rb +3 -0
- data/ext/spark/build.sbt +73 -0
- data/ext/spark/project/plugins.sbt +9 -0
- data/ext/spark/sbt/sbt +34 -0
- data/ext/spark/src/main/scala/Exec.scala +91 -0
- data/ext/spark/src/main/scala/MLLibAPI.scala +4 -0
- data/ext/spark/src/main/scala/Marshal.scala +52 -0
- data/ext/spark/src/main/scala/MarshalDump.scala +113 -0
- data/ext/spark/src/main/scala/MarshalLoad.scala +220 -0
- data/ext/spark/src/main/scala/RubyAccumulatorParam.scala +69 -0
- data/ext/spark/src/main/scala/RubyBroadcast.scala +13 -0
- data/ext/spark/src/main/scala/RubyConstant.scala +13 -0
- data/ext/spark/src/main/scala/RubyMLLibAPI.scala +55 -0
- data/ext/spark/src/main/scala/RubyMLLibUtilAPI.scala +21 -0
- data/ext/spark/src/main/scala/RubyPage.scala +34 -0
- data/ext/spark/src/main/scala/RubyRDD.scala +392 -0
- data/ext/spark/src/main/scala/RubySerializer.scala +14 -0
- data/ext/spark/src/main/scala/RubyTab.scala +11 -0
- data/ext/spark/src/main/scala/RubyUtils.scala +15 -0
- data/ext/spark/src/main/scala/RubyWorker.scala +257 -0
- data/ext/spark/src/test/scala/MarshalSpec.scala +84 -0
- data/lib/ruby-spark.rb +1 -0
- data/lib/spark.rb +198 -0
- data/lib/spark/accumulator.rb +260 -0
- data/lib/spark/broadcast.rb +98 -0
- data/lib/spark/build.rb +43 -0
- data/lib/spark/cli.rb +169 -0
- data/lib/spark/command.rb +86 -0
- data/lib/spark/command/base.rb +158 -0
- data/lib/spark/command/basic.rb +345 -0
- data/lib/spark/command/pair.rb +124 -0
- data/lib/spark/command/sort.rb +51 -0
- data/lib/spark/command/statistic.rb +144 -0
- data/lib/spark/command_builder.rb +141 -0
- data/lib/spark/command_validator.rb +34 -0
- data/lib/spark/config.rb +238 -0
- data/lib/spark/constant.rb +14 -0
- data/lib/spark/context.rb +322 -0
- data/lib/spark/error.rb +50 -0
- data/lib/spark/ext/hash.rb +41 -0
- data/lib/spark/ext/integer.rb +25 -0
- data/lib/spark/ext/io.rb +67 -0
- data/lib/spark/ext/ip_socket.rb +29 -0
- data/lib/spark/ext/module.rb +58 -0
- data/lib/spark/ext/object.rb +24 -0
- data/lib/spark/ext/string.rb +24 -0
- data/lib/spark/helper.rb +10 -0
- data/lib/spark/helper/logger.rb +40 -0
- data/lib/spark/helper/parser.rb +85 -0
- data/lib/spark/helper/serialize.rb +71 -0
- data/lib/spark/helper/statistic.rb +93 -0
- data/lib/spark/helper/system.rb +42 -0
- data/lib/spark/java_bridge.rb +19 -0
- data/lib/spark/java_bridge/base.rb +203 -0
- data/lib/spark/java_bridge/jruby.rb +23 -0
- data/lib/spark/java_bridge/rjb.rb +41 -0
- data/lib/spark/logger.rb +76 -0
- data/lib/spark/mllib.rb +100 -0
- data/lib/spark/mllib/classification/common.rb +31 -0
- data/lib/spark/mllib/classification/logistic_regression.rb +223 -0
- data/lib/spark/mllib/classification/naive_bayes.rb +97 -0
- data/lib/spark/mllib/classification/svm.rb +135 -0
- data/lib/spark/mllib/clustering/gaussian_mixture.rb +82 -0
- data/lib/spark/mllib/clustering/kmeans.rb +118 -0
- data/lib/spark/mllib/matrix.rb +120 -0
- data/lib/spark/mllib/regression/common.rb +73 -0
- data/lib/spark/mllib/regression/labeled_point.rb +41 -0
- data/lib/spark/mllib/regression/lasso.rb +100 -0
- data/lib/spark/mllib/regression/linear.rb +124 -0
- data/lib/spark/mllib/regression/ridge.rb +97 -0
- data/lib/spark/mllib/ruby_matrix/matrix_adapter.rb +53 -0
- data/lib/spark/mllib/ruby_matrix/vector_adapter.rb +57 -0
- data/lib/spark/mllib/stat/distribution.rb +12 -0
- data/lib/spark/mllib/vector.rb +185 -0
- data/lib/spark/rdd.rb +1377 -0
- data/lib/spark/sampler.rb +92 -0
- data/lib/spark/serializer.rb +79 -0
- data/lib/spark/serializer/auto_batched.rb +59 -0
- data/lib/spark/serializer/base.rb +63 -0
- data/lib/spark/serializer/batched.rb +84 -0
- data/lib/spark/serializer/cartesian.rb +13 -0
- data/lib/spark/serializer/compressed.rb +27 -0
- data/lib/spark/serializer/marshal.rb +17 -0
- data/lib/spark/serializer/message_pack.rb +23 -0
- data/lib/spark/serializer/oj.rb +23 -0
- data/lib/spark/serializer/pair.rb +41 -0
- data/lib/spark/serializer/text.rb +25 -0
- data/lib/spark/sort.rb +189 -0
- data/lib/spark/stat_counter.rb +125 -0
- data/lib/spark/storage_level.rb +39 -0
- data/lib/spark/version.rb +3 -0
- data/lib/spark/worker/master.rb +144 -0
- data/lib/spark/worker/spark_files.rb +15 -0
- data/lib/spark/worker/worker.rb +200 -0
- data/ruby-spark.gemspec +47 -0
- data/spec/generator.rb +37 -0
- data/spec/inputs/lorem_300.txt +316 -0
- data/spec/inputs/numbers/1.txt +50 -0
- data/spec/inputs/numbers/10.txt +50 -0
- data/spec/inputs/numbers/11.txt +50 -0
- data/spec/inputs/numbers/12.txt +50 -0
- data/spec/inputs/numbers/13.txt +50 -0
- data/spec/inputs/numbers/14.txt +50 -0
- data/spec/inputs/numbers/15.txt +50 -0
- data/spec/inputs/numbers/16.txt +50 -0
- data/spec/inputs/numbers/17.txt +50 -0
- data/spec/inputs/numbers/18.txt +50 -0
- data/spec/inputs/numbers/19.txt +50 -0
- data/spec/inputs/numbers/2.txt +50 -0
- data/spec/inputs/numbers/20.txt +50 -0
- data/spec/inputs/numbers/3.txt +50 -0
- data/spec/inputs/numbers/4.txt +50 -0
- data/spec/inputs/numbers/5.txt +50 -0
- data/spec/inputs/numbers/6.txt +50 -0
- data/spec/inputs/numbers/7.txt +50 -0
- data/spec/inputs/numbers/8.txt +50 -0
- data/spec/inputs/numbers/9.txt +50 -0
- data/spec/inputs/numbers_0_100.txt +101 -0
- data/spec/inputs/numbers_1_100.txt +100 -0
- data/spec/lib/collect_spec.rb +42 -0
- data/spec/lib/command_spec.rb +68 -0
- data/spec/lib/config_spec.rb +64 -0
- data/spec/lib/context_spec.rb +165 -0
- data/spec/lib/ext_spec.rb +72 -0
- data/spec/lib/external_apps_spec.rb +45 -0
- data/spec/lib/filter_spec.rb +80 -0
- data/spec/lib/flat_map_spec.rb +100 -0
- data/spec/lib/group_spec.rb +109 -0
- data/spec/lib/helper_spec.rb +19 -0
- data/spec/lib/key_spec.rb +41 -0
- data/spec/lib/manipulation_spec.rb +122 -0
- data/spec/lib/map_partitions_spec.rb +87 -0
- data/spec/lib/map_spec.rb +91 -0
- data/spec/lib/mllib/classification_spec.rb +54 -0
- data/spec/lib/mllib/clustering_spec.rb +35 -0
- data/spec/lib/mllib/matrix_spec.rb +32 -0
- data/spec/lib/mllib/regression_spec.rb +116 -0
- data/spec/lib/mllib/vector_spec.rb +77 -0
- data/spec/lib/reduce_by_key_spec.rb +118 -0
- data/spec/lib/reduce_spec.rb +131 -0
- data/spec/lib/sample_spec.rb +46 -0
- data/spec/lib/serializer_spec.rb +88 -0
- data/spec/lib/sort_spec.rb +58 -0
- data/spec/lib/statistic_spec.rb +170 -0
- data/spec/lib/whole_text_files_spec.rb +33 -0
- data/spec/spec_helper.rb +38 -0
- metadata +389 -0
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#!/usr/bin/env ruby
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$PROGRAM_NAME = 'RubySparkMaster'
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require 'socket'
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require 'io/wait'
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require 'nio'
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require_relative 'worker'
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# New process group
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# Otherwise master can be killed from pry console
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Process.setsid
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# =================================================================================================
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# Master
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#
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module Master
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def self.create
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case ARGV[0].to_s.strip
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when 'thread'
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Master::Thread.new
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else
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Master::Process.new
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end
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end
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class Base
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include Spark::Constant
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def initialize
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@port = ARGV[1].to_s.strip.to_i
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@socket = TCPSocket.open('localhost', @port)
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@worker_arguments = @socket.read_string
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end
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def run
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selector = NIO::Selector.new
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monitor = selector.register(@socket, :r)
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monitor.value = Proc.new { receive_message }
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loop {
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selector.select {|monitor| monitor.value.call}
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}
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end
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def receive_message
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command = @socket.read_int
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case command
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when CREATE_WORKER
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create_worker
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when KILL_WORKER
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kill_worker
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when KILL_WORKER_AND_WAIT
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kill_worker_and_wait
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end
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end
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def kill_worker_and_wait
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if kill_worker
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@socket.write_int(SUCCESSFULLY_KILLED)
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else
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@socket.write_int(UNSUCCESSFUL_KILLING)
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end
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end
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end
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# ===============================================================================================
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# Worker::Process
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#
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class Process < Base
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def create_worker
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if fork?
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pid = ::Process.fork do
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Worker::Process.new(@port).run
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end
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else
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pid = ::Process.spawn("ruby #{@worker_arguments} worker.rb #{@port}")
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end
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# Detach child from master to avoid zombie process
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::Process.detach(pid)
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end
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def kill_worker
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worker_id = @socket.read_long
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::Process.kill('TERM', worker_id)
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rescue
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nil
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end
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def fork?
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@can_fork ||= _fork?
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end
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def _fork?
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return false if !::Process.respond_to?(:fork)
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pid = ::Process.fork
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exit unless pid # exit the child immediately
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true
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rescue NotImplementedError
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false
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end
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end
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# ===============================================================================================
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# Worker::Thread
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#
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class Thread < Base
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def initialize
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::Thread.abort_on_exception = true
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# For synchronous access to socket IO
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$mutex_for_command = Mutex.new
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$mutex_for_iterator = Mutex.new
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super
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end
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def create_worker
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::Thread.new do
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Worker::Thread.new(@port).run
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end
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end
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def kill_worker
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worker_id = @socket.read_long
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thread = ObjectSpace._id2ref(worker_id)
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thread.kill
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rescue
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nil
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end
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end
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end
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# Create proper master by worker_type
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Master.create.run
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#!/usr/bin/env ruby
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# Load root of the gem
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lib = File.expand_path(File.join('..', '..'), File.dirname(__FILE__))
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$LOAD_PATH.unshift(lib) if File.directory?(lib) && !$LOAD_PATH.include?(lib)
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require 'ruby-spark.rb'
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require 'socket'
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require_relative 'spark_files'
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# =================================================================================================
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# Worker
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#
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# Iterator is LAZY !!!
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#
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module Worker
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class Base
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include Spark::Helper::Serialize
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include Spark::Helper::System
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include Spark::Constant
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attr_accessor :socket
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def initialize(port)
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# Open socket to Spark
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@socket = TCPSocket.open('localhost', port)
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# Send back worker ID
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socket.write_long(id)
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end
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def run
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begin
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compute
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rescue => e
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send_error(e)
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else
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successful_finish
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end
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end
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private
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def before_start
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# Should be implemented in sub-classes
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end
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def before_end
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# Should be implemented in sub-classes
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end
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# These methods must be on one method because iterator is Lazy
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# which mean that exception can be raised at `serializer` or `compute`
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def compute
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before_start
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# Load split index
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@split_index = socket.read_int
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# Load files
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SparkFiles.root_directory = socket.read_string
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# Load broadcast
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count = socket.read_int
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count.times do
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Spark::Broadcast.register(socket.read_long, socket.read_string)
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end
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# Load command
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@command = socket.read_data
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# Load iterator
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@iterator = @command.deserializer.load_from_io(socket).lazy
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# Compute
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@iterator = @command.execute(@iterator, @split_index)
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# Result is not iterable
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@iterator = [@iterator] unless @iterator.respond_to?(:each)
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# Send result
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@command.serializer.dump_to_io(@iterator, socket)
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end
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def send_error(e)
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# Flag
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socket.write_int(WORKER_ERROR)
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# Message
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socket.write_string(e.message)
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# Backtrace
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socket.write_int(e.backtrace.size)
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e.backtrace.each do |item|
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socket.write_string(item)
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end
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socket.flush
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# Wait for spark
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# Socket is closed before throwing an exception
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# Singal that ruby exception was fully received
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until socket.closed?
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sleep(0.1)
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end
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# Depend on type of worker
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kill_worker
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end
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def successful_finish
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# Finish
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socket.write_int(WORKER_DONE)
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# Send changed accumulator
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changed = Spark::Accumulator.changed
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|
+
socket.write_int(changed.size)
|
121
|
+
changed.each do |accumulator|
|
122
|
+
socket.write_data([accumulator.id, accumulator.value])
|
123
|
+
end
|
124
|
+
|
125
|
+
# Send it
|
126
|
+
socket.flush
|
127
|
+
|
128
|
+
before_end
|
129
|
+
end
|
130
|
+
|
131
|
+
def log(message=nil)
|
132
|
+
return if !$DEBUG
|
133
|
+
|
134
|
+
$stdout.puts %{==> #{Time.now.strftime('%H:%M:%S')} [#{id}] #{message}}
|
135
|
+
$stdout.flush
|
136
|
+
end
|
137
|
+
|
138
|
+
end
|
139
|
+
|
140
|
+
# ===============================================================================================
|
141
|
+
# Worker::Process
|
142
|
+
#
|
143
|
+
class Process < Base
|
144
|
+
|
145
|
+
def id
|
146
|
+
::Process.pid
|
147
|
+
end
|
148
|
+
|
149
|
+
private
|
150
|
+
|
151
|
+
def before_start
|
152
|
+
$PROGRAM_NAME = 'RubySparkWorker'
|
153
|
+
end
|
154
|
+
|
155
|
+
def kill_worker
|
156
|
+
Process.exit(false)
|
157
|
+
end
|
158
|
+
|
159
|
+
end
|
160
|
+
|
161
|
+
# ===============================================================================================
|
162
|
+
# Worker::Thread
|
163
|
+
#
|
164
|
+
class Thread < Base
|
165
|
+
|
166
|
+
def id
|
167
|
+
::Thread.current.object_id
|
168
|
+
end
|
169
|
+
|
170
|
+
private
|
171
|
+
|
172
|
+
def load_command
|
173
|
+
$mutex_for_command.synchronize { super }
|
174
|
+
end
|
175
|
+
|
176
|
+
# Threads changing for reading is very slow
|
177
|
+
# Faster way is do it one by one
|
178
|
+
def load_iterator
|
179
|
+
# Wait for incoming connection for preventing deadlock
|
180
|
+
if jruby?
|
181
|
+
socket.io_wait
|
182
|
+
else
|
183
|
+
socket.wait_readable
|
184
|
+
end
|
185
|
+
|
186
|
+
$mutex_for_iterator.synchronize { super }
|
187
|
+
end
|
188
|
+
|
189
|
+
def kill_worker
|
190
|
+
Thread.current.kill
|
191
|
+
end
|
192
|
+
|
193
|
+
end
|
194
|
+
end
|
195
|
+
|
196
|
+
# Worker is loaded as standalone
|
197
|
+
if $PROGRAM_NAME == __FILE__
|
198
|
+
worker = Worker::Process.new(ARGV[0])
|
199
|
+
worker.run
|
200
|
+
end
|
data/ruby-spark.gemspec
ADDED
@@ -0,0 +1,47 @@
|
|
1
|
+
# coding: utf-8
|
2
|
+
|
3
|
+
lib = File.expand_path('../lib', __FILE__)
|
4
|
+
$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
|
5
|
+
|
6
|
+
require 'spark/version'
|
7
|
+
|
8
|
+
Gem::Specification.new do |spec|
|
9
|
+
spec.name = 'ruby-spark'
|
10
|
+
spec.version = Spark::VERSION
|
11
|
+
spec.authors = ['Ondřej Moravčík']
|
12
|
+
spec.email = ['moravcik.ondrej@gmail.com']
|
13
|
+
spec.summary = %q{Ruby wrapper for Apache Spark}
|
14
|
+
spec.description = %q{}
|
15
|
+
spec.homepage = ''
|
16
|
+
spec.license = 'MIT'
|
17
|
+
|
18
|
+
spec.files = `git ls-files -z`.split("\x0")
|
19
|
+
spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
|
20
|
+
spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
|
21
|
+
spec.require_paths = ['lib']
|
22
|
+
|
23
|
+
if RUBY_PLATFORM =~ /java/
|
24
|
+
spec.platform = 'java'
|
25
|
+
|
26
|
+
extensions = ['ext/ruby_java/extconf.rb']
|
27
|
+
else
|
28
|
+
extensions = ['ext/ruby_c/extconf.rb']
|
29
|
+
|
30
|
+
spec.add_dependency 'rjb'
|
31
|
+
end
|
32
|
+
|
33
|
+
spec.extensions = extensions
|
34
|
+
spec.required_ruby_version = '>= 2.0'
|
35
|
+
|
36
|
+
spec.requirements << 'java, scala'
|
37
|
+
|
38
|
+
spec.add_dependency 'sourcify', '0.6.0.rc4'
|
39
|
+
spec.add_dependency 'method_source'
|
40
|
+
spec.add_dependency 'commander'
|
41
|
+
spec.add_dependency 'pry'
|
42
|
+
spec.add_dependency 'nio4r'
|
43
|
+
spec.add_dependency 'distribution'
|
44
|
+
|
45
|
+
spec.add_development_dependency 'bundler', '~> 1.6'
|
46
|
+
spec.add_development_dependency 'rake'
|
47
|
+
end
|
data/spec/generator.rb
ADDED
@@ -0,0 +1,37 @@
|
|
1
|
+
class Generator
|
2
|
+
def self.numbers(size=1000)
|
3
|
+
Array.new(size){ rand(1..1000) }
|
4
|
+
end
|
5
|
+
|
6
|
+
def self.numbers_with_zero(size=1000)
|
7
|
+
Array.new(size){ rand(0..1000) }
|
8
|
+
end
|
9
|
+
|
10
|
+
def self.words(size=1000)
|
11
|
+
Array.new(size) { word }
|
12
|
+
end
|
13
|
+
|
14
|
+
def self.word(size=10)
|
15
|
+
Array.new(rand(1..size)){(97+rand(26)).chr}.join
|
16
|
+
end
|
17
|
+
|
18
|
+
def self.lines(size=1000, letters=3)
|
19
|
+
Array.new(size) do
|
20
|
+
Array.new(rand(50..100)){
|
21
|
+
(97+rand(letters)).chr + (" " * (rand(10) == 0 ? 1 : 0))
|
22
|
+
}.join
|
23
|
+
end
|
24
|
+
end
|
25
|
+
|
26
|
+
def self.hash(size=1000)
|
27
|
+
Array.new(size) do
|
28
|
+
[word(2), rand(1..10)]
|
29
|
+
end
|
30
|
+
end
|
31
|
+
|
32
|
+
def self.hash_with_values(size=1000, values_count=10)
|
33
|
+
Array.new(size) do
|
34
|
+
[word(2), Array.new(values_count) { rand(1..10) }]
|
35
|
+
end
|
36
|
+
end
|
37
|
+
end
|