ruby-spark 1.1.0.1-java

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Files changed (180) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +37 -0
  3. data/Gemfile +47 -0
  4. data/Guardfile +5 -0
  5. data/LICENSE.txt +22 -0
  6. data/README.md +252 -0
  7. data/Rakefile +35 -0
  8. data/TODO.md +6 -0
  9. data/benchmark/aggregate.rb +33 -0
  10. data/benchmark/bisect.rb +88 -0
  11. data/benchmark/comparison/prepare.sh +18 -0
  12. data/benchmark/comparison/python.py +156 -0
  13. data/benchmark/comparison/r.r +69 -0
  14. data/benchmark/comparison/ruby.rb +167 -0
  15. data/benchmark/comparison/run-all.sh +160 -0
  16. data/benchmark/comparison/scala.scala +181 -0
  17. data/benchmark/custom_marshal.rb +94 -0
  18. data/benchmark/digest.rb +150 -0
  19. data/benchmark/enumerator.rb +88 -0
  20. data/benchmark/serializer.rb +82 -0
  21. data/benchmark/sort.rb +43 -0
  22. data/benchmark/sort2.rb +164 -0
  23. data/benchmark/take.rb +28 -0
  24. data/bin/ruby-spark +8 -0
  25. data/example/pi.rb +28 -0
  26. data/example/website_search.rb +83 -0
  27. data/ext/ruby_c/extconf.rb +3 -0
  28. data/ext/ruby_c/murmur.c +158 -0
  29. data/ext/ruby_c/murmur.h +9 -0
  30. data/ext/ruby_c/ruby-spark.c +18 -0
  31. data/ext/ruby_java/Digest.java +36 -0
  32. data/ext/ruby_java/Murmur2.java +98 -0
  33. data/ext/ruby_java/RubySparkExtService.java +28 -0
  34. data/ext/ruby_java/extconf.rb +3 -0
  35. data/ext/spark/build.sbt +73 -0
  36. data/ext/spark/project/plugins.sbt +9 -0
  37. data/ext/spark/sbt/sbt +34 -0
  38. data/ext/spark/src/main/scala/Exec.scala +91 -0
  39. data/ext/spark/src/main/scala/MLLibAPI.scala +4 -0
  40. data/ext/spark/src/main/scala/Marshal.scala +52 -0
  41. data/ext/spark/src/main/scala/MarshalDump.scala +113 -0
  42. data/ext/spark/src/main/scala/MarshalLoad.scala +220 -0
  43. data/ext/spark/src/main/scala/RubyAccumulatorParam.scala +69 -0
  44. data/ext/spark/src/main/scala/RubyBroadcast.scala +13 -0
  45. data/ext/spark/src/main/scala/RubyConstant.scala +13 -0
  46. data/ext/spark/src/main/scala/RubyMLLibAPI.scala +55 -0
  47. data/ext/spark/src/main/scala/RubyMLLibUtilAPI.scala +21 -0
  48. data/ext/spark/src/main/scala/RubyPage.scala +34 -0
  49. data/ext/spark/src/main/scala/RubyRDD.scala +392 -0
  50. data/ext/spark/src/main/scala/RubySerializer.scala +14 -0
  51. data/ext/spark/src/main/scala/RubyTab.scala +11 -0
  52. data/ext/spark/src/main/scala/RubyUtils.scala +15 -0
  53. data/ext/spark/src/main/scala/RubyWorker.scala +257 -0
  54. data/ext/spark/src/test/scala/MarshalSpec.scala +84 -0
  55. data/lib/ruby-spark.rb +1 -0
  56. data/lib/spark.rb +198 -0
  57. data/lib/spark/accumulator.rb +260 -0
  58. data/lib/spark/broadcast.rb +98 -0
  59. data/lib/spark/build.rb +43 -0
  60. data/lib/spark/cli.rb +169 -0
  61. data/lib/spark/command.rb +86 -0
  62. data/lib/spark/command/base.rb +158 -0
  63. data/lib/spark/command/basic.rb +345 -0
  64. data/lib/spark/command/pair.rb +124 -0
  65. data/lib/spark/command/sort.rb +51 -0
  66. data/lib/spark/command/statistic.rb +144 -0
  67. data/lib/spark/command_builder.rb +141 -0
  68. data/lib/spark/command_validator.rb +34 -0
  69. data/lib/spark/config.rb +238 -0
  70. data/lib/spark/constant.rb +14 -0
  71. data/lib/spark/context.rb +322 -0
  72. data/lib/spark/error.rb +50 -0
  73. data/lib/spark/ext/hash.rb +41 -0
  74. data/lib/spark/ext/integer.rb +25 -0
  75. data/lib/spark/ext/io.rb +67 -0
  76. data/lib/spark/ext/ip_socket.rb +29 -0
  77. data/lib/spark/ext/module.rb +58 -0
  78. data/lib/spark/ext/object.rb +24 -0
  79. data/lib/spark/ext/string.rb +24 -0
  80. data/lib/spark/helper.rb +10 -0
  81. data/lib/spark/helper/logger.rb +40 -0
  82. data/lib/spark/helper/parser.rb +85 -0
  83. data/lib/spark/helper/serialize.rb +71 -0
  84. data/lib/spark/helper/statistic.rb +93 -0
  85. data/lib/spark/helper/system.rb +42 -0
  86. data/lib/spark/java_bridge.rb +19 -0
  87. data/lib/spark/java_bridge/base.rb +203 -0
  88. data/lib/spark/java_bridge/jruby.rb +23 -0
  89. data/lib/spark/java_bridge/rjb.rb +41 -0
  90. data/lib/spark/logger.rb +76 -0
  91. data/lib/spark/mllib.rb +100 -0
  92. data/lib/spark/mllib/classification/common.rb +31 -0
  93. data/lib/spark/mllib/classification/logistic_regression.rb +223 -0
  94. data/lib/spark/mllib/classification/naive_bayes.rb +97 -0
  95. data/lib/spark/mllib/classification/svm.rb +135 -0
  96. data/lib/spark/mllib/clustering/gaussian_mixture.rb +82 -0
  97. data/lib/spark/mllib/clustering/kmeans.rb +118 -0
  98. data/lib/spark/mllib/matrix.rb +120 -0
  99. data/lib/spark/mllib/regression/common.rb +73 -0
  100. data/lib/spark/mllib/regression/labeled_point.rb +41 -0
  101. data/lib/spark/mllib/regression/lasso.rb +100 -0
  102. data/lib/spark/mllib/regression/linear.rb +124 -0
  103. data/lib/spark/mllib/regression/ridge.rb +97 -0
  104. data/lib/spark/mllib/ruby_matrix/matrix_adapter.rb +53 -0
  105. data/lib/spark/mllib/ruby_matrix/vector_adapter.rb +57 -0
  106. data/lib/spark/mllib/stat/distribution.rb +12 -0
  107. data/lib/spark/mllib/vector.rb +185 -0
  108. data/lib/spark/rdd.rb +1377 -0
  109. data/lib/spark/sampler.rb +92 -0
  110. data/lib/spark/serializer.rb +79 -0
  111. data/lib/spark/serializer/auto_batched.rb +59 -0
  112. data/lib/spark/serializer/base.rb +63 -0
  113. data/lib/spark/serializer/batched.rb +84 -0
  114. data/lib/spark/serializer/cartesian.rb +13 -0
  115. data/lib/spark/serializer/compressed.rb +27 -0
  116. data/lib/spark/serializer/marshal.rb +17 -0
  117. data/lib/spark/serializer/message_pack.rb +23 -0
  118. data/lib/spark/serializer/oj.rb +23 -0
  119. data/lib/spark/serializer/pair.rb +41 -0
  120. data/lib/spark/serializer/text.rb +25 -0
  121. data/lib/spark/sort.rb +189 -0
  122. data/lib/spark/stat_counter.rb +125 -0
  123. data/lib/spark/storage_level.rb +39 -0
  124. data/lib/spark/version.rb +3 -0
  125. data/lib/spark/worker/master.rb +144 -0
  126. data/lib/spark/worker/spark_files.rb +15 -0
  127. data/lib/spark/worker/worker.rb +200 -0
  128. data/ruby-spark.gemspec +47 -0
  129. data/spec/generator.rb +37 -0
  130. data/spec/inputs/lorem_300.txt +316 -0
  131. data/spec/inputs/numbers/1.txt +50 -0
  132. data/spec/inputs/numbers/10.txt +50 -0
  133. data/spec/inputs/numbers/11.txt +50 -0
  134. data/spec/inputs/numbers/12.txt +50 -0
  135. data/spec/inputs/numbers/13.txt +50 -0
  136. data/spec/inputs/numbers/14.txt +50 -0
  137. data/spec/inputs/numbers/15.txt +50 -0
  138. data/spec/inputs/numbers/16.txt +50 -0
  139. data/spec/inputs/numbers/17.txt +50 -0
  140. data/spec/inputs/numbers/18.txt +50 -0
  141. data/spec/inputs/numbers/19.txt +50 -0
  142. data/spec/inputs/numbers/2.txt +50 -0
  143. data/spec/inputs/numbers/20.txt +50 -0
  144. data/spec/inputs/numbers/3.txt +50 -0
  145. data/spec/inputs/numbers/4.txt +50 -0
  146. data/spec/inputs/numbers/5.txt +50 -0
  147. data/spec/inputs/numbers/6.txt +50 -0
  148. data/spec/inputs/numbers/7.txt +50 -0
  149. data/spec/inputs/numbers/8.txt +50 -0
  150. data/spec/inputs/numbers/9.txt +50 -0
  151. data/spec/inputs/numbers_0_100.txt +101 -0
  152. data/spec/inputs/numbers_1_100.txt +100 -0
  153. data/spec/lib/collect_spec.rb +42 -0
  154. data/spec/lib/command_spec.rb +68 -0
  155. data/spec/lib/config_spec.rb +64 -0
  156. data/spec/lib/context_spec.rb +165 -0
  157. data/spec/lib/ext_spec.rb +72 -0
  158. data/spec/lib/external_apps_spec.rb +45 -0
  159. data/spec/lib/filter_spec.rb +80 -0
  160. data/spec/lib/flat_map_spec.rb +100 -0
  161. data/spec/lib/group_spec.rb +109 -0
  162. data/spec/lib/helper_spec.rb +19 -0
  163. data/spec/lib/key_spec.rb +41 -0
  164. data/spec/lib/manipulation_spec.rb +122 -0
  165. data/spec/lib/map_partitions_spec.rb +87 -0
  166. data/spec/lib/map_spec.rb +91 -0
  167. data/spec/lib/mllib/classification_spec.rb +54 -0
  168. data/spec/lib/mllib/clustering_spec.rb +35 -0
  169. data/spec/lib/mllib/matrix_spec.rb +32 -0
  170. data/spec/lib/mllib/regression_spec.rb +116 -0
  171. data/spec/lib/mllib/vector_spec.rb +77 -0
  172. data/spec/lib/reduce_by_key_spec.rb +118 -0
  173. data/spec/lib/reduce_spec.rb +131 -0
  174. data/spec/lib/sample_spec.rb +46 -0
  175. data/spec/lib/serializer_spec.rb +88 -0
  176. data/spec/lib/sort_spec.rb +58 -0
  177. data/spec/lib/statistic_spec.rb +170 -0
  178. data/spec/lib/whole_text_files_spec.rb +33 -0
  179. data/spec/spec_helper.rb +38 -0
  180. metadata +389 -0
@@ -0,0 +1,88 @@
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+ require "benchmark"
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+
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+ def bisect_left1(a, x, opts={})
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+ return nil if a.nil?
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+ return 0 if a.empty?
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+
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+ lo = (opts[:lo] || opts[:low]).to_i
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+ hi = opts[:hi] || opts[:high] || a.length
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+
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+ while lo < hi
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+ mid = (lo + hi) / 2
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+ v = a[mid]
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+ if v < x
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+ lo = mid + 1
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+ else
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+ hi = mid
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+ end
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+ end
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+ return lo
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+ end
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+
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+ def bisect_left2(list, item)
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+ count = 0
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+ list.each{|i|
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+ return count if i >= item
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+ count += 1
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+ }
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+ nil
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+ end
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+
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+ def bisect_left3(list, item, lo = 0, hi = list.size)
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+ while lo < hi
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+ i = (lo + hi - 1) >> 1
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+
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+ if 0 <= (list[i] <=> item)
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+ hi = i
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+ else
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+ lo = i + 1
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+ end
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+ end
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+ return hi
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+ end
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+
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+ array = Array.new(1000000) { rand(0..1000000) };
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+ to_find = Array.new(500) { rand(0..10000) };
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+
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+ Benchmark.bm(20) do |x|
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+ x.report("bisect_left1") do
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+ to_find.each do |item|
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+ bisect_left1(array, item)
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+ end
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+ end
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+
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+ x.report("bisect_left2") do
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+ to_find.each do |item|
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+ bisect_left2(array, item)
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+ end
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+ end
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+
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+ x.report("bisect_left3") do
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+ to_find.each do |item|
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+ bisect_left3(array, item)
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+ end
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+ end
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+ end
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+
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+ array = Array.new(100000) { Array.new(rand(1..10)){(97+rand(26)).chr}.join };
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+ to_find = Array.new(500) { (97+rand(26)).chr };
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+
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+ Benchmark.bm(20) do |x|
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+ x.report("bisect_left1") do
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+ to_find.each do |item|
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+ bisect_left1(array, item)
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+ end
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+ end
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+
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+ x.report("bisect_left2") do
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+ to_find.each do |item|
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+ bisect_left2(array, item)
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+ end
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+ end
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+
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+ x.report("bisect_left3") do
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+ to_find.each do |item|
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+ bisect_left3(array, item)
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+ end
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+ end
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+ end
@@ -0,0 +1,18 @@
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+ #!/usr/bin/env bash
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+
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+ # Current dir
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+ cd "$(dirname "$0")"
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+
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+ # Exit immediately if a pipeline returns a non-zero status.
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+ set -e
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+
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+ # Spark
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+ wget "http://d3kbcqa49mib13.cloudfront.net/spark-1.3.0-bin-hadoop2.4.tgz" -O spark.tgz
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+ tar xvzf spark.tgz
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+ mv spark-1.3.0-bin-hadoop2.4 spark
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+ rm spark.tgz
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+
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+ # RSpark (only for 1.3.0)
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+ git clone git@github.com:amplab-extras/SparkR-pkg.git rspark
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+ cd rspark
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+ SPARK_VERSION=1.3.0 ./install-dev.sh
@@ -0,0 +1,156 @@
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+ import os
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+ import math
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+ from time import time
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+ from random import random
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+ from operator import add
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+ from pyspark import SparkContext
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+
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+ sc = SparkContext(appName="Python", master="local[*]")
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+
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+ log_file = open(os.environ.get('PYTHON_LOG'), 'w')
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+
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+ def log(*values):
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+ values = map(lambda x: str(x), values)
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+ log_file.write(';'.join(values))
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+ log_file.write('\n')
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+
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+ workers = int(os.environ.get('WORKERS'))
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+ numbers_count = int(os.environ.get('NUMBERS_COUNT'))
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+ text_file = os.environ.get('TEXT_FILE')
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+
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+ numbers = range(numbers_count)
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+ floats = [float(i) for i in numbers]
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+ with open(text_file) as t:
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+ strings = t.read().split("\n")
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+
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+
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+ # =============================================================================
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+ # Serialization
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+ # =============================================================================
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+
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+ t = time()
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+ rdd_numbers = sc.parallelize(numbers, workers)
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+ t = time() - t
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+ log('NumbersSerialization', t)
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+
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+
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+ t = time()
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+ rdd_floats = sc.parallelize(floats, workers)
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+ t = time() - t
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+ log('FloatsSerialization', t)
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+
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+
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+ t = time()
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+ rdd_strings = sc.parallelize(strings, workers)
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+ t = time() - t
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+ log('StringsSerialization', t)
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+
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+
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+ # =============================================================================
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+ # Computing
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+ # =============================================================================
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+
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+
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+ # --- Is prime? ---------------------------------------------------------------
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+
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+ def is_prime(x):
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+ if x < 2:
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+ return [x, False]
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+ elif x == 2:
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+ return [x, True]
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+ elif x % 2 == 0:
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+ return [x, False]
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+ else:
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+ upper = int(math.sqrt(float(x)))
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+ result = True
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+
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+ i = 3
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+ while i <= upper:
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+ if x % i == 0:
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+ result = False
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+ break
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+
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+ i += 2
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+
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+ return [x, result]
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+
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+ t = time()
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+ rdd_numbers.map(is_prime).collect()
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+ t = time() - t
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+
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+ log('IsPrime', t)
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+
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+
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+ # --- Matrix multiplication ---------------------------------------------------
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+
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+ matrix_size = int(os.environ.get('MATRIX_SIZE'))
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+
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+ matrix = []
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+ for row in range(matrix_size):
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+ matrix.append([])
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+ for col in range(matrix_size):
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+ matrix[row].append(row+col)
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+
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+ def multiplication_func(matrix):
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+ matrix = list(matrix)
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+ size = len(matrix)
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+
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+ new_matrix = []
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+ for row in range(size):
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+ new_matrix.append([])
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+ for col in range(size):
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+
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+ result = 0
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+ for i in range(size):
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+ result += matrix[row][i] * matrix[col][i]
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+ new_matrix[row].append(result)
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+
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+ return new_matrix
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+
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+ t = time()
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+ rdd = sc.parallelize(matrix, 1)
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+ rdd.mapPartitions(multiplication_func).collect()
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+ t = time() - t
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+
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+ log('MatrixMultiplication', t)
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+
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+
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+ # --- Pi digits ---------------------------------------------------------------
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+ # http://rosettacode.org/wiki/Pi#Python
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+
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+ pi_digit = int(os.environ.get('PI_DIGIT'))
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+
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+ def pi_func(size):
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+ size = size.next()
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+ result = ''
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+
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+ q, r, t, k, n, l = 1, 0, 1, 1, 3, 3
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+ while size > 0:
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+ if 4*q+r-t < n*t:
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+ result += str(n)
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+ size -= 1
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+ nr = 10*(r-n*t)
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+ n = ((10*(3*q+r))//t)-10*n
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+ q *= 10
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+ r = nr
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+ else:
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+ nr = (2*q+r)*l
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+ nn = (q*(7*k)+2+(r*l))//(t*l)
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+ q *= k
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+ t *= l
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+ l += 2
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+ k += 1
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+ n = nn
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+ r = nr
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+
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+ return [result]
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+
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+ t = time()
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+ rdd = sc.parallelize([pi_digit], 1)
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+ rdd.mapPartitions(pi_func).collect()
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+ t = time() - t
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+
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+ log('PiDigit', t)
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+
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+
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+ log_file.close()
@@ -0,0 +1,69 @@
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+ library(SparkR)
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+ sc <- sparkR.init(master="local[*]")
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+
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+ logFile <- file(Sys.getenv("R_LOG"), "w")
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+
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+ logInfo <- function(...){
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+ args <- list(...)
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+ line <- paste(args, collapse = ";")
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+ writeLines(line, logFile)
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+ }
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+
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+ workers <- as.integer(Sys.getenv('WORKERS'))
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+ numbersCount <- as.integer(Sys.getenv('NUMBERS_COUNT'))
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+ textFile <- Sys.getenv('TEXT_FILE')
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+
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+
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+ # =============================================================================
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+ # Serialization
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+ # =============================================================================
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+
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+ time <- proc.time()
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+ rddNumbers <- parallelize(sc, as.numeric(seq(0, numbersCount)), workers)
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+ time <- as.double(proc.time()-time)[3]
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+
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+ logInfo('NumbersSerialization', time)
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+
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+
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+ # =============================================================================
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+ # Computing
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+ # =============================================================================
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+
32
+ isPrime = function(x) {
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+ if(x < 2){
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+ c(x, FALSE)
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+ }
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+ else if(x == 2){
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+ c(x, TRUE)
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+ }
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+ else if(x %% 2 == 0){
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+ c(x, FALSE)
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+ }
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+ else{
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+ upper <- as.numeric(sqrt(as.double(x)))
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+ result <- TRUE
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+
46
+ i <- 3
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+ while(i <= upper){
48
+ if(x %% i == 0){
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+ result = FALSE
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+ break
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+ }
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+
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+ i <- i+2
54
+ }
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+
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+ c(x, result)
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+ }
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+ }
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+
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+ time <- proc.time()
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+ rdd <- map(rddNumbers, isPrime)
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+ capture.output(collect(rdd), file='/dev/null')
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+ time <- as.double(proc.time()-time)[3]
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+
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+ logInfo('IsPrime', time)
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+
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+
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+ close(logFile)
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+ sparkR.stop()
@@ -0,0 +1,167 @@
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+ #!/usr/bin/env ruby
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+
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+ lib = File.expand_path(File.dirname(__FILE__) + '/../../lib')
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+ $LOAD_PATH.unshift(lib) if File.directory?(lib) && !$LOAD_PATH.include?(lib)
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+
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+ require 'ruby-spark'
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+ require 'benchmark'
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+
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+ Spark.start
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+ sc = Spark.context
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+
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+ $log_file = File.open(ENV['RUBY_LOG'], 'w')
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+
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+ def log(*values)
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+ $log_file.puts(values.join(';'))
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+ end
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+
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+ workers = ENV['WORKERS'].to_i
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+ numbers_count = ENV['NUMBERS_COUNT'].to_i
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+ text_file = ENV['TEXT_FILE']
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+
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+ numbers = (0...numbers_count).to_a
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+ floats = numbers.map(&:to_f)
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+ strings = File.read(text_file).split("\n")
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+
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+
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+ # =============================================================================
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+ # Serialization
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+ # =============================================================================
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+
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+ time = Benchmark.realtime do
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+ @rdd_numbers = sc.parallelize(numbers, workers)
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+ end
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+
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+ log('NumbersSerialization', time)
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+
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+
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+ time = Benchmark.realtime do
39
+ @rdd_floats = sc.parallelize(floats, workers)
40
+ end
41
+
42
+ log('FloatsSerialization', time)
43
+
44
+
45
+ time = Benchmark.realtime do
46
+ @rdd_strings = sc.parallelize(strings, workers)
47
+ end
48
+
49
+ log('StringsSerialization', time)
50
+
51
+
52
+ # =============================================================================
53
+ # Computing
54
+ # =============================================================================
55
+
56
+
57
+ # --- Is prime? ---------------------------------------------------------------
58
+
59
+ is_prime = Proc.new do |x|
60
+ case
61
+ when x < 2
62
+ [x, false]
63
+ when x == 2
64
+ [x, true]
65
+ when x % 2 == 0
66
+ [x, false]
67
+ else
68
+ upper = Math.sqrt(x.to_f).to_i
69
+ result = true
70
+
71
+ i = 3
72
+ while i <= upper
73
+ if x % i == 0
74
+ result = false
75
+ break
76
+ end
77
+
78
+ i += 2
79
+ end
80
+
81
+ [x, result]
82
+ end
83
+ end
84
+
85
+ time = Benchmark.realtime do
86
+ @rdd_numbers.map(is_prime).collect
87
+ end
88
+
89
+ log('IsPrime', time)
90
+
91
+
92
+ # --- Matrix multiplication ---------------------------------------------------
93
+
94
+ matrix_size = ENV['MATRIX_SIZE'].to_i
95
+
96
+ matrix = Array.new(matrix_size) do |row|
97
+ Array.new(matrix_size) do |col|
98
+ row+col
99
+ end
100
+ end;
101
+
102
+ multiplication_func = Proc.new do |matrix|
103
+ size = matrix.size
104
+
105
+ Array.new(size) do |row|
106
+ Array.new(size) do |col|
107
+ matrix[row]
108
+
109
+ result = 0
110
+ size.times do |i|
111
+ result += matrix[row][i] * matrix[col][i]
112
+ end
113
+ result
114
+ end
115
+ end
116
+ end
117
+
118
+ time = Benchmark.realtime do
119
+ rdd = sc.parallelize(matrix, 1)
120
+ rdd.map_partitions(multiplication_func).collect
121
+ end
122
+
123
+ log('MatrixMultiplication', time)
124
+
125
+
126
+ # --- Pi digits ---------------------------------------------------------------
127
+ # http://rosettacode.org/wiki/Pi#Ruby
128
+
129
+ pi_digit = ENV['PI_DIGIT'].to_i
130
+
131
+ pi_func = Proc.new do |size|
132
+ size = size.first
133
+ result = ''
134
+
135
+ q, r, t, k, n, l = 1, 0, 1, 1, 3, 3
136
+ while size > 0
137
+ if 4*q+r-t < n*t
138
+ result << n.to_s
139
+ size -= 1
140
+ nr = 10*(r-n*t)
141
+ n = ((10*(3*q+r)) / t) - 10*n
142
+ q *= 10
143
+ r = nr
144
+ else
145
+ nr = (2*q+r) * l
146
+ nn = (q*(7*k+2)+r*l) / (t*l)
147
+ q *= k
148
+ t *= l
149
+ l += 2
150
+ k += 1
151
+ n = nn
152
+ r = nr
153
+ end
154
+ end
155
+
156
+ [result]
157
+ end
158
+
159
+ time = Benchmark.realtime do
160
+ rdd = sc.parallelize([pi_digit], 1)
161
+ rdd.map_partitions(pi_func).collect
162
+ end
163
+
164
+ log('PiDigit', time)
165
+
166
+
167
+ $log_file.close