ruby-spark 1.1.0.1-java
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- checksums.yaml +7 -0
- data/.gitignore +37 -0
- data/Gemfile +47 -0
- data/Guardfile +5 -0
- data/LICENSE.txt +22 -0
- data/README.md +252 -0
- data/Rakefile +35 -0
- data/TODO.md +6 -0
- data/benchmark/aggregate.rb +33 -0
- data/benchmark/bisect.rb +88 -0
- data/benchmark/comparison/prepare.sh +18 -0
- data/benchmark/comparison/python.py +156 -0
- data/benchmark/comparison/r.r +69 -0
- data/benchmark/comparison/ruby.rb +167 -0
- data/benchmark/comparison/run-all.sh +160 -0
- data/benchmark/comparison/scala.scala +181 -0
- data/benchmark/custom_marshal.rb +94 -0
- data/benchmark/digest.rb +150 -0
- data/benchmark/enumerator.rb +88 -0
- data/benchmark/serializer.rb +82 -0
- data/benchmark/sort.rb +43 -0
- data/benchmark/sort2.rb +164 -0
- data/benchmark/take.rb +28 -0
- data/bin/ruby-spark +8 -0
- data/example/pi.rb +28 -0
- data/example/website_search.rb +83 -0
- data/ext/ruby_c/extconf.rb +3 -0
- data/ext/ruby_c/murmur.c +158 -0
- data/ext/ruby_c/murmur.h +9 -0
- data/ext/ruby_c/ruby-spark.c +18 -0
- data/ext/ruby_java/Digest.java +36 -0
- data/ext/ruby_java/Murmur2.java +98 -0
- data/ext/ruby_java/RubySparkExtService.java +28 -0
- data/ext/ruby_java/extconf.rb +3 -0
- data/ext/spark/build.sbt +73 -0
- data/ext/spark/project/plugins.sbt +9 -0
- data/ext/spark/sbt/sbt +34 -0
- data/ext/spark/src/main/scala/Exec.scala +91 -0
- data/ext/spark/src/main/scala/MLLibAPI.scala +4 -0
- data/ext/spark/src/main/scala/Marshal.scala +52 -0
- data/ext/spark/src/main/scala/MarshalDump.scala +113 -0
- data/ext/spark/src/main/scala/MarshalLoad.scala +220 -0
- data/ext/spark/src/main/scala/RubyAccumulatorParam.scala +69 -0
- data/ext/spark/src/main/scala/RubyBroadcast.scala +13 -0
- data/ext/spark/src/main/scala/RubyConstant.scala +13 -0
- data/ext/spark/src/main/scala/RubyMLLibAPI.scala +55 -0
- data/ext/spark/src/main/scala/RubyMLLibUtilAPI.scala +21 -0
- data/ext/spark/src/main/scala/RubyPage.scala +34 -0
- data/ext/spark/src/main/scala/RubyRDD.scala +392 -0
- data/ext/spark/src/main/scala/RubySerializer.scala +14 -0
- data/ext/spark/src/main/scala/RubyTab.scala +11 -0
- data/ext/spark/src/main/scala/RubyUtils.scala +15 -0
- data/ext/spark/src/main/scala/RubyWorker.scala +257 -0
- data/ext/spark/src/test/scala/MarshalSpec.scala +84 -0
- data/lib/ruby-spark.rb +1 -0
- data/lib/spark.rb +198 -0
- data/lib/spark/accumulator.rb +260 -0
- data/lib/spark/broadcast.rb +98 -0
- data/lib/spark/build.rb +43 -0
- data/lib/spark/cli.rb +169 -0
- data/lib/spark/command.rb +86 -0
- data/lib/spark/command/base.rb +158 -0
- data/lib/spark/command/basic.rb +345 -0
- data/lib/spark/command/pair.rb +124 -0
- data/lib/spark/command/sort.rb +51 -0
- data/lib/spark/command/statistic.rb +144 -0
- data/lib/spark/command_builder.rb +141 -0
- data/lib/spark/command_validator.rb +34 -0
- data/lib/spark/config.rb +238 -0
- data/lib/spark/constant.rb +14 -0
- data/lib/spark/context.rb +322 -0
- data/lib/spark/error.rb +50 -0
- data/lib/spark/ext/hash.rb +41 -0
- data/lib/spark/ext/integer.rb +25 -0
- data/lib/spark/ext/io.rb +67 -0
- data/lib/spark/ext/ip_socket.rb +29 -0
- data/lib/spark/ext/module.rb +58 -0
- data/lib/spark/ext/object.rb +24 -0
- data/lib/spark/ext/string.rb +24 -0
- data/lib/spark/helper.rb +10 -0
- data/lib/spark/helper/logger.rb +40 -0
- data/lib/spark/helper/parser.rb +85 -0
- data/lib/spark/helper/serialize.rb +71 -0
- data/lib/spark/helper/statistic.rb +93 -0
- data/lib/spark/helper/system.rb +42 -0
- data/lib/spark/java_bridge.rb +19 -0
- data/lib/spark/java_bridge/base.rb +203 -0
- data/lib/spark/java_bridge/jruby.rb +23 -0
- data/lib/spark/java_bridge/rjb.rb +41 -0
- data/lib/spark/logger.rb +76 -0
- data/lib/spark/mllib.rb +100 -0
- data/lib/spark/mllib/classification/common.rb +31 -0
- data/lib/spark/mllib/classification/logistic_regression.rb +223 -0
- data/lib/spark/mllib/classification/naive_bayes.rb +97 -0
- data/lib/spark/mllib/classification/svm.rb +135 -0
- data/lib/spark/mllib/clustering/gaussian_mixture.rb +82 -0
- data/lib/spark/mllib/clustering/kmeans.rb +118 -0
- data/lib/spark/mllib/matrix.rb +120 -0
- data/lib/spark/mllib/regression/common.rb +73 -0
- data/lib/spark/mllib/regression/labeled_point.rb +41 -0
- data/lib/spark/mllib/regression/lasso.rb +100 -0
- data/lib/spark/mllib/regression/linear.rb +124 -0
- data/lib/spark/mllib/regression/ridge.rb +97 -0
- data/lib/spark/mllib/ruby_matrix/matrix_adapter.rb +53 -0
- data/lib/spark/mllib/ruby_matrix/vector_adapter.rb +57 -0
- data/lib/spark/mllib/stat/distribution.rb +12 -0
- data/lib/spark/mllib/vector.rb +185 -0
- data/lib/spark/rdd.rb +1377 -0
- data/lib/spark/sampler.rb +92 -0
- data/lib/spark/serializer.rb +79 -0
- data/lib/spark/serializer/auto_batched.rb +59 -0
- data/lib/spark/serializer/base.rb +63 -0
- data/lib/spark/serializer/batched.rb +84 -0
- data/lib/spark/serializer/cartesian.rb +13 -0
- data/lib/spark/serializer/compressed.rb +27 -0
- data/lib/spark/serializer/marshal.rb +17 -0
- data/lib/spark/serializer/message_pack.rb +23 -0
- data/lib/spark/serializer/oj.rb +23 -0
- data/lib/spark/serializer/pair.rb +41 -0
- data/lib/spark/serializer/text.rb +25 -0
- data/lib/spark/sort.rb +189 -0
- data/lib/spark/stat_counter.rb +125 -0
- data/lib/spark/storage_level.rb +39 -0
- data/lib/spark/version.rb +3 -0
- data/lib/spark/worker/master.rb +144 -0
- data/lib/spark/worker/spark_files.rb +15 -0
- data/lib/spark/worker/worker.rb +200 -0
- data/ruby-spark.gemspec +47 -0
- data/spec/generator.rb +37 -0
- data/spec/inputs/lorem_300.txt +316 -0
- data/spec/inputs/numbers/1.txt +50 -0
- data/spec/inputs/numbers/10.txt +50 -0
- data/spec/inputs/numbers/11.txt +50 -0
- data/spec/inputs/numbers/12.txt +50 -0
- data/spec/inputs/numbers/13.txt +50 -0
- data/spec/inputs/numbers/14.txt +50 -0
- data/spec/inputs/numbers/15.txt +50 -0
- data/spec/inputs/numbers/16.txt +50 -0
- data/spec/inputs/numbers/17.txt +50 -0
- data/spec/inputs/numbers/18.txt +50 -0
- data/spec/inputs/numbers/19.txt +50 -0
- data/spec/inputs/numbers/2.txt +50 -0
- data/spec/inputs/numbers/20.txt +50 -0
- data/spec/inputs/numbers/3.txt +50 -0
- data/spec/inputs/numbers/4.txt +50 -0
- data/spec/inputs/numbers/5.txt +50 -0
- data/spec/inputs/numbers/6.txt +50 -0
- data/spec/inputs/numbers/7.txt +50 -0
- data/spec/inputs/numbers/8.txt +50 -0
- data/spec/inputs/numbers/9.txt +50 -0
- data/spec/inputs/numbers_0_100.txt +101 -0
- data/spec/inputs/numbers_1_100.txt +100 -0
- data/spec/lib/collect_spec.rb +42 -0
- data/spec/lib/command_spec.rb +68 -0
- data/spec/lib/config_spec.rb +64 -0
- data/spec/lib/context_spec.rb +165 -0
- data/spec/lib/ext_spec.rb +72 -0
- data/spec/lib/external_apps_spec.rb +45 -0
- data/spec/lib/filter_spec.rb +80 -0
- data/spec/lib/flat_map_spec.rb +100 -0
- data/spec/lib/group_spec.rb +109 -0
- data/spec/lib/helper_spec.rb +19 -0
- data/spec/lib/key_spec.rb +41 -0
- data/spec/lib/manipulation_spec.rb +122 -0
- data/spec/lib/map_partitions_spec.rb +87 -0
- data/spec/lib/map_spec.rb +91 -0
- data/spec/lib/mllib/classification_spec.rb +54 -0
- data/spec/lib/mllib/clustering_spec.rb +35 -0
- data/spec/lib/mllib/matrix_spec.rb +32 -0
- data/spec/lib/mllib/regression_spec.rb +116 -0
- data/spec/lib/mllib/vector_spec.rb +77 -0
- data/spec/lib/reduce_by_key_spec.rb +118 -0
- data/spec/lib/reduce_spec.rb +131 -0
- data/spec/lib/sample_spec.rb +46 -0
- data/spec/lib/serializer_spec.rb +88 -0
- data/spec/lib/sort_spec.rb +58 -0
- data/spec/lib/statistic_spec.rb +170 -0
- data/spec/lib/whole_text_files_spec.rb +33 -0
- data/spec/spec_helper.rb +38 -0
- metadata +389 -0
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require 'distribution'
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# Random Generators
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module Spark
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module RandomGenerator
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class Poisson
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def initialize(mean, seed)
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generator = Random.new(seed)
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@exp_rng = Distribution::Exponential.rng(1.0/mean, random: generator)
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end
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def rand
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t = 0.0
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number = 0
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loop{
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t += @exp_rng.call
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if t > 1
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return number
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end
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number += 1
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}
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end
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end
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end
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end
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# Samplers
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module Spark
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module Sampler
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class Base
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attr_reader :fraction, :seed
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def initialize(fraction, seed=nil)
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@fraction = fraction
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@seed = seed || Random.new_seed
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end
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end
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# Poisson Sampler
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# -------------------------------------------------------------------------
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class Poisson < Base
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def sample(iterator)
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iterator.map! do |item|
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count = rng.rand
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Array.new(count) { item }
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end
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iterator.flatten!
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iterator.compact!
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iterator
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end
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def lazy_sample(iterator)
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Enumerator::Lazy.new(iterator) do |yielder, value|
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count = rng.rand
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count.times { yielder << value }
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end
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end
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def rng
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@rng ||= Spark::RandomGenerator::Poisson.new(fraction, seed)
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end
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end
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# Uniform Sampler
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# -------------------------------------------------------------------------
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class Uniform < Base
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def sample(iterator)
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iterator.select!{|item| rng.rand <= fraction}
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iterator
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end
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def lazy_sample(iterator)
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iterator.select do |item|
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rng.rand <= fraction
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end
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end
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def rng
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@rng ||= Random.new(seed)
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end
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end
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end
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end
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module Spark
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##
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# Serializer
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#
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module Serializer
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DEFAULT_COMPRESS = false
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DEFAULT_BATCH_SIZE = 1024
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DEFAULT_SERIALIZER_NAME = 'marshal'
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@@registered = {}
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# Register class and create method for quick access.
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# Class will be available also as __name__ for using
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# in build method (Proc binding problem).
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#
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# == Examples:
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# register('test1', 'test2', Class)
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#
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# Spark::Serializer.test1
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# Spark::Serializer.test2
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#
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# # Proc binding problem
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# build { marshal } # => Spark::Serializer::Marshal
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#
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# marshal = 1
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# build { marshal } # => 1
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#
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# build { __marshal__ } # => Spark::Serializer::Marshal
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#
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def self.register(*args)
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klass = args.pop
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args.each do |arg|
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@@registered[arg] = klass
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define_singleton_method(arg.to_sym){|*args| klass.new(*args) }
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define_singleton_method("__#{arg}__".to_sym){|*args| klass.new(*args) }
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end
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end
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def self.find(name)
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@@registered[name.to_s.downcase]
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end
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def self.find!(name)
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klass = find(name)
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if klass.nil?
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raise Spark::SerializeError, "Unknow serializer #{name}."
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end
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klass
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end
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def self.build(text=nil, &block)
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if block_given?
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class_eval(&block)
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else
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class_eval(text.to_s)
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end
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end
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end
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end
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# Parent
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require 'spark/serializer/base'
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# Basic
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require 'spark/serializer/oj'
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require 'spark/serializer/marshal'
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require 'spark/serializer/message_pack'
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require 'spark/serializer/text'
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# Others
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require 'spark/serializer/batched'
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require 'spark/serializer/auto_batched'
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require 'spark/serializer/compressed'
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require 'spark/serializer/pair'
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require 'spark/serializer/cartesian'
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module Spark
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module Serializer
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##
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# AutoBatched serializator
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#
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# Batch size is computed automatically. Simillar to Python's AutoBatchedSerializer.
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#
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class AutoBatched < Batched
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MAX_RATIO = 10
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def initialize(serializer, best_size=65536)
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@serializer = serializer
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@best_size = best_size.to_i
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error('Batch size must be greater than 1') if @best_size < 2
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end
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def name
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"AutoBatched(#{@best_size})"
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end
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def dump_to_io(data, io)
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check_each(data)
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# Only Array have .slice
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data = data.to_a
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index = 0
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batch = 2
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max = @best_size * MAX_RATIO
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loop do
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chunk = data.slice(index, batch)
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if chunk.nil? || chunk.empty?
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break
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end
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serialized = @serializer.dump(chunk)
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io.write_string(serialized)
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index += batch
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size = serialized.bytesize
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if size < @best_size
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batch *= 2
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elsif size > max && batch > 1
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batch /= 2
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end
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end
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io.flush
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end
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end
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end
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end
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Spark::Serializer.register('auto_batched', 'autobatched', Spark::Serializer::AutoBatched)
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module Spark
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module Serializer
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# @abstract Parent for all serializers
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class Base
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def load_from_io(io)
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return to_enum(__callee__, io) unless block_given?
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loop do
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size = io.read_int_or_eof
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break if size == Spark::Constant::DATA_EOF
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yield load(io.read(size))
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end
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end
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def load_from_file(file, *args)
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return to_enum(__callee__, file, *args) unless block_given?
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load_from_io(file, *args).each do |item|
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yield item
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end
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file.close
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file.unlink
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end
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def ==(other)
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self.to_s == other.to_s
|
30
|
+
end
|
31
|
+
|
32
|
+
def batched?
|
33
|
+
false
|
34
|
+
end
|
35
|
+
|
36
|
+
def unbatch!
|
37
|
+
end
|
38
|
+
|
39
|
+
def check_each(data)
|
40
|
+
unless data.respond_to?(:each)
|
41
|
+
error('Data must be iterable.')
|
42
|
+
end
|
43
|
+
end
|
44
|
+
|
45
|
+
def error(message)
|
46
|
+
raise Spark::SerializeError, message
|
47
|
+
end
|
48
|
+
|
49
|
+
def name
|
50
|
+
self.class.name.split('::').last
|
51
|
+
end
|
52
|
+
|
53
|
+
def to_s
|
54
|
+
name
|
55
|
+
end
|
56
|
+
|
57
|
+
def inspect
|
58
|
+
%{#<Spark::Serializer:0x#{object_id} "#{self}">}
|
59
|
+
end
|
60
|
+
|
61
|
+
end
|
62
|
+
end
|
63
|
+
end
|
@@ -0,0 +1,84 @@
|
|
1
|
+
module Spark
|
2
|
+
module Serializer
|
3
|
+
class Batched < Base
|
4
|
+
|
5
|
+
attr_writer :serializer
|
6
|
+
|
7
|
+
def initialize(serializer, batch_size=nil)
|
8
|
+
batch_size ||= Spark::Serializer::DEFAULT_BATCH_SIZE
|
9
|
+
|
10
|
+
@serializer = serializer
|
11
|
+
@batch_size = batch_size.to_i
|
12
|
+
|
13
|
+
error('Batch size must be greater than 0') if @batch_size < 1
|
14
|
+
end
|
15
|
+
|
16
|
+
# Really batched
|
17
|
+
def batched?
|
18
|
+
@batch_size > 1
|
19
|
+
end
|
20
|
+
|
21
|
+
def unbatch!
|
22
|
+
@batch_size = 1
|
23
|
+
end
|
24
|
+
|
25
|
+
def load(data)
|
26
|
+
@serializer.load(data)
|
27
|
+
end
|
28
|
+
|
29
|
+
def dump(data)
|
30
|
+
@serializer.dump(data)
|
31
|
+
end
|
32
|
+
|
33
|
+
def name
|
34
|
+
"Batched(#{@batch_size})"
|
35
|
+
end
|
36
|
+
|
37
|
+
def to_s
|
38
|
+
"#{name} -> #{@serializer}"
|
39
|
+
end
|
40
|
+
|
41
|
+
|
42
|
+
# === Dump ==============================================================
|
43
|
+
|
44
|
+
def dump_to_io(data, io)
|
45
|
+
check_each(data)
|
46
|
+
|
47
|
+
if batched?
|
48
|
+
data = data.each_slice(@batch_size)
|
49
|
+
end
|
50
|
+
|
51
|
+
data.each do |item|
|
52
|
+
serialized = dump(item)
|
53
|
+
io.write_string(serialized)
|
54
|
+
end
|
55
|
+
|
56
|
+
io.flush
|
57
|
+
end
|
58
|
+
|
59
|
+
|
60
|
+
# === Load ==============================================================
|
61
|
+
|
62
|
+
def load_from_io(io)
|
63
|
+
return to_enum(__callee__, io) unless block_given?
|
64
|
+
|
65
|
+
loop do
|
66
|
+
size = io.read_int_or_eof
|
67
|
+
break if size == Spark::Constant::DATA_EOF
|
68
|
+
|
69
|
+
data = io.read(size)
|
70
|
+
data = load(data)
|
71
|
+
|
72
|
+
if batched?
|
73
|
+
data.each{|item| yield item }
|
74
|
+
else
|
75
|
+
yield data
|
76
|
+
end
|
77
|
+
end
|
78
|
+
end
|
79
|
+
|
80
|
+
end
|
81
|
+
end
|
82
|
+
end
|
83
|
+
|
84
|
+
Spark::Serializer.register('batched', Spark::Serializer::Batched)
|
@@ -0,0 +1,27 @@
|
|
1
|
+
module Spark
|
2
|
+
module Serializer
|
3
|
+
class Compressed < Base
|
4
|
+
|
5
|
+
def initialize(serializer)
|
6
|
+
@serializer = serializer
|
7
|
+
end
|
8
|
+
|
9
|
+
def dump(data)
|
10
|
+
Zlib::Deflate.deflate(@serializer.dump(data))
|
11
|
+
end
|
12
|
+
|
13
|
+
def load(data)
|
14
|
+
@serializer.load(Zlib::Inflate.inflate(data))
|
15
|
+
end
|
16
|
+
|
17
|
+
end
|
18
|
+
end
|
19
|
+
end
|
20
|
+
|
21
|
+
begin
|
22
|
+
# TODO: require only if it is necessary
|
23
|
+
require 'zlib'
|
24
|
+
|
25
|
+
Spark::Serializer.register('compress', 'compressed', Spark::Serializer::Compressed)
|
26
|
+
rescue LoadError
|
27
|
+
end
|
@@ -0,0 +1,17 @@
|
|
1
|
+
module Spark
|
2
|
+
module Serializer
|
3
|
+
class Marshal < Base
|
4
|
+
|
5
|
+
def dump(data)
|
6
|
+
::Marshal.dump(data)
|
7
|
+
end
|
8
|
+
|
9
|
+
def load(data)
|
10
|
+
::Marshal.load(data)
|
11
|
+
end
|
12
|
+
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
|
17
|
+
Spark::Serializer.register('marshal', Spark::Serializer::Marshal)
|
@@ -0,0 +1,23 @@
|
|
1
|
+
module Spark
|
2
|
+
module Serializer
|
3
|
+
class MessagePack < Base
|
4
|
+
|
5
|
+
def dump(data)
|
6
|
+
::MessagePack.dump(data)
|
7
|
+
end
|
8
|
+
|
9
|
+
def load(data)
|
10
|
+
::MessagePack.load(data)
|
11
|
+
end
|
12
|
+
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
|
17
|
+
begin
|
18
|
+
# TODO: require only if it is necessary
|
19
|
+
require 'msgpack'
|
20
|
+
|
21
|
+
Spark::Serializer.register('messagepack', 'message_pack', 'msgpack', 'msg_pack', Spark::Serializer::MessagePack)
|
22
|
+
rescue LoadError
|
23
|
+
end
|