renalware-core 2.0.148 → 2.0.155
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/README.md +23 -2
- data/app/assets/config/renalware/core/manifest.js +1 -0
- data/app/assets/images/renalware/icons/align-justify.svg +3 -0
- data/app/assets/images/renalware/icons/bar-chart.svg +1 -0
- data/app/assets/images/renalware/icons/chart-bar.svg +1 -0
- data/app/assets/images/renalware/icons/chart.svg +3 -0
- data/app/assets/images/renalware/icons/list-bullet.svg +1 -0
- data/app/assets/images/renalware/icons/list.svg +8 -0
- data/app/assets/javascripts/renalware/README.md +25 -1
- data/app/assets/javascripts/renalware/components/dialogs.js.erb +3 -1
- data/app/assets/javascripts/renalware/components/hd.js +2 -2
- data/app/assets/javascripts/renalware/components/letters.js +1 -1
- data/app/assets/javascripts/renalware/components/masonry.run.js +2 -2
- data/app/assets/javascripts/renalware/components/navigation.js +0 -7
- data/app/assets/javascripts/renalware/components/patient_menu.js +1 -1
- data/app/assets/javascripts/renalware/components/session_timeout_redirect.js.erb +26 -21
- data/app/assets/javascripts/renalware/components/sortable.js +3 -0
- data/app/assets/javascripts/renalware/components/toggler.js +1 -1
- data/app/assets/javascripts/renalware/core.js.erb +2 -2
- data/app/assets/javascripts/renalware/rollup_compiled.css +106315 -0
- data/app/assets/javascripts/renalware/rollup_compiled.js +3326 -16
- data/app/assets/stylesheets/renalware/base/_variables.scss +1 -0
- data/app/assets/stylesheets/renalware/core.scss +1 -0
- data/app/assets/stylesheets/renalware/lib/_foundation_and_overrides.scss +1 -620
- data/app/assets/stylesheets/renalware/lib/_select2-foundation5-overrides.scss +1 -1
- data/app/assets/stylesheets/renalware/modules/_hd.scss +8 -4
- data/app/assets/stylesheets/renalware/modules/_medications.scss +9 -9
- data/app/assets/stylesheets/renalware/modules/_pathology.scss +8 -1
- data/app/assets/stylesheets/renalware/modules/_patients.scss +4 -0
- data/app/assets/stylesheets/renalware/modules/_pd.scss +35 -0
- data/app/assets/stylesheets/renalware/modules/_users.scss +2 -1
- data/app/assets/stylesheets/renalware/partials/_charting.scss +17 -0
- data/app/assets/stylesheets/renalware/partials/_forms.scss +16 -1
- data/app/assets/stylesheets/renalware/partials/_navigation.scss +15 -12
- data/app/assets/stylesheets/renalware/partials/_simple_form.scss +11 -3
- data/app/assets/stylesheets/renalware/partials/_tables.scss +15 -8
- data/app/assets/stylesheets/renalware/partials/_toggle.scss +0 -66
- data/app/assets/stylesheets/renalware/partials/_toggling.scss +18 -0
- data/app/assets/stylesheets/renalware/partials/_trix.scss +12 -0
- data/app/assets/stylesheets/renalware/partials/_utilities.scss +12 -0
- data/app/assets/stylesheets/tailwind/tailwind.css +3 -0
- data/app/components/renalware/admissions/active_consult_alert_component.html.slim +4 -0
- data/app/components/renalware/admissions/active_consult_alert_component.rb +25 -0
- data/app/components/renalware/application_component.rb +2 -1
- data/app/components/renalware/article_component.html.slim +5 -0
- data/app/components/renalware/article_component.rb +12 -0
- data/app/components/renalware/events/{biopsies_component.html.slim → event_list_component.html.slim} +5 -4
- data/app/components/renalware/events/event_list_component.rb +82 -0
- data/app/components/renalware/hd/administer_prescription_dropdown_component.html.slim +1 -1
- data/app/components/renalware/hd/administer_prescription_dropdown_component.rb +1 -5
- data/app/components/renalware/hd/prescription_last_administration_component.html.slim +0 -1
- data/app/components/renalware/hd/prescription_last_administration_component.rb +8 -7
- data/app/components/renalware/letters/unread_electronic_ccs_component.rb +1 -0
- data/app/components/renalware/medications/tabbed_prescriptions_list_component.html.slim +41 -0
- data/app/components/renalware/medications/tabbed_prescriptions_list_component.rb +47 -0
- data/app/components/renalware/pathology/chart_component.html.slim +5 -0
- data/app/components/renalware/pathology/chart_component.rb +40 -0
- data/app/components/renalware/pathology/sparkline_component.html.slim +15 -0
- data/app/components/renalware/pathology/sparkline_component.rb +135 -0
- data/app/components/renalware/patients/messages_component.html.slim +45 -0
- data/app/components/renalware/patients/messages_component.rb +52 -0
- data/app/components/renalware/patients/side_menu_component.rb +2 -11
- data/app/components/renalware/pd/adequacy_results_component.html.slim +7 -0
- data/app/components/renalware/pd/adequacy_results_component.rb +39 -0
- data/app/components/renalware/pd/pet_results_component.html.slim +37 -0
- data/app/components/renalware/pd/pet_results_component.rb +84 -0
- data/app/{views/renalware/surveys/_eq5d_summary_part.html.slim → components/renalware/surveys/eq5d_component.html.slim} +5 -5
- data/app/{models/renalware/surveys/eq5d_summary_part.rb → components/renalware/surveys/eq5d_component.rb} +7 -5
- data/app/{views/renalware/surveys/_pos_s_summary_part.html.slim → components/renalware/surveys/pos_s_component.html.slim} +6 -9
- data/app/{models/renalware/surveys/pos_s_summary_part.rb → components/renalware/surveys/pos_s_component.rb} +9 -5
- data/app/components/renalware/system/admin_menu_component.html.slim +3 -1
- data/app/components/renalware/system/admin_menu_component.rb +2 -2
- data/app/components/renalware/system/article_component.html.slim +3 -0
- data/app/components/renalware/system/article_component.rb +9 -0
- data/app/components/renalware/users/last_signin_component.html.slim +3 -0
- data/app/components/renalware/users/last_signin_component.rb +23 -0
- data/app/controllers/renalware/admin/playgrounds_controller.rb +1 -1
- data/app/controllers/renalware/admin/users_controller.rb +1 -0
- data/app/controllers/renalware/admissions/consults_controller.rb +1 -1
- data/app/controllers/renalware/base_controller.rb +3 -3
- data/app/controllers/renalware/concerns/pdf_renderable.rb +1 -1
- data/app/controllers/renalware/drugs/drugs_controller.rb +4 -0
- data/app/controllers/renalware/hd/historical_profiles_controller.rb +1 -1
- data/app/controllers/renalware/hd/scheduling/diaries_controller.rb +1 -1
- data/app/controllers/renalware/medications/prescriptions_controller.rb +6 -3
- data/app/controllers/renalware/messaging/internal/messages_controller.rb +14 -5
- data/app/controllers/renalware/pathology/charts_controller.rb +21 -0
- data/app/controllers/renalware/pathology/current_observation_results_controller.rb +1 -1
- data/app/controllers/renalware/pathology/historical_observation_results_controller.rb +1 -1
- data/app/controllers/renalware/pathology/nearest_observation_results_controller.rb +52 -0
- data/app/controllers/renalware/pathology/observation_descriptions_controller.rb +58 -0
- data/app/controllers/renalware/pathology/observation_requests_controller.rb +1 -1
- data/app/controllers/renalware/pathology/observations_controller.rb +26 -2
- data/app/controllers/renalware/pathology/requests/requests_controller.rb +7 -5
- data/app/controllers/renalware/patients/mdms_controller.rb +104 -0
- data/app/controllers/renalware/pd/adequacy_completions_controller.rb +18 -0
- data/app/controllers/renalware/pd/adequacy_results_controller.rb +98 -0
- data/app/controllers/renalware/pd/pet_completions_controller.rb +18 -0
- data/app/controllers/renalware/pd/pet_results_controller.rb +122 -0
- data/app/controllers/renalware/pd/unified_pet_adequacies_controller.rb +102 -0
- data/app/controllers/renalware/renal/aki_alerts_controller.rb +1 -1
- data/app/controllers/renalware/renal/registry_preflight_checks_controller.rb +55 -19
- data/app/controllers/renalware/session_timeout_controller.rb +20 -17
- data/app/controllers/renalware/system/view_metadata_controller.rb +61 -0
- data/app/controllers/renalware/users_controller.rb +25 -0
- data/app/documents/renalware/age.rb +3 -1
- data/app/helpers/renalware/application_helper.rb +9 -8
- data/app/helpers/renalware/article_helper.rb +3 -3
- data/app/helpers/renalware/boolean_helper.rb +15 -0
- data/app/helpers/renalware/clipboard_helper.rb +2 -3
- data/app/helpers/renalware/dashboards_helper.rb +2 -2
- data/app/helpers/renalware/definition_list_helper.rb +3 -3
- data/app/helpers/renalware/devise_helper.rb +1 -1
- data/app/helpers/renalware/drugs_helper.rb +6 -0
- data/app/helpers/renalware/form_helper.rb +2 -2
- data/app/helpers/renalware/layout_helper.rb +1 -1
- data/app/helpers/renalware/letters_helper.rb +1 -1
- data/app/helpers/renalware/link_helper.rb +1 -1
- data/app/helpers/renalware/mdm_helper.rb +1 -0
- data/app/helpers/renalware/navigation_helper.rb +1 -1
- data/app/helpers/renalware/patient_helper.rb +2 -2
- data/app/helpers/renalware/snippets_helper.rb +9 -10
- data/app/helpers/renalware/toggle_helper.rb +6 -6
- data/app/helpers/renalware/tooltip_helper.rb +14 -16
- data/app/inputs/clock_picker_input.rb +3 -3
- data/app/inputs/date_picker_input.rb +3 -3
- data/app/inputs/simple_time_input.rb +3 -3
- data/app/inputs/trix_editor_input.rb +2 -0
- data/app/javascript/renalware/controllers/blas_controller.js +37 -0
- data/app/javascript/renalware/controllers/modal_controller.js +137 -0
- data/app/javascript/renalware/controllers/pathology/sparklines_controller.js +206 -0
- data/app/javascript/renalware/controllers/pd/pet_charts_controller.js +169 -0
- data/app/javascript/renalware/controllers/session_controller.js +223 -0
- data/app/javascript/renalware/controllers/simple_toggle_controller.js +17 -0
- data/app/javascript/renalware/controllers/tabs_controller.js +43 -0
- data/app/javascript/renalware/controllers/toggle_controller.js +2 -2
- data/app/javascript/renalware/index.js +12 -0
- data/app/models/concerns/renalware/patients_ransack_helper.rb +2 -0
- data/app/models/concerns/renalware/sortable.rb +49 -0
- data/app/models/renalware/accesses/assessment.rb +5 -1
- data/app/models/renalware/accesses/patient.rb +2 -2
- data/app/models/renalware/accesses/plan.rb +1 -1
- data/app/models/renalware/accesses/procedure.rb +4 -1
- data/app/models/renalware/accesses/profile.rb +4 -1
- data/app/models/renalware/admissions/request.rb +1 -0
- data/app/models/renalware/clinical/body_composition.rb +5 -2
- data/app/models/renalware/clinical/dry_weight.rb +5 -2
- data/app/models/renalware/clinics/body_surface_area.rb +40 -0
- data/app/models/renalware/clinics/clinic_visit.rb +30 -5
- data/app/models/renalware/clinics/total_body_water.rb +63 -0
- data/app/models/renalware/events/advanced_care_plan.rb +24 -0
- data/app/models/renalware/events/clinical_frailty_score.rb +24 -0
- data/app/models/renalware/feeds/files/create_feed_file.rb +1 -1
- data/app/models/renalware/feeds/hl7_message.rb +1 -0
- data/app/models/renalware/hd/patient.rb +1 -1
- data/app/models/renalware/hd/preference_set.rb +5 -2
- data/app/models/renalware/hd/prescription_last_administration_query.rb +4 -0
- data/app/models/renalware/hd/profile.rb +9 -6
- data/app/models/renalware/hd/schedule_definition.rb +1 -1
- data/app/models/renalware/hd/session.rb +6 -3
- data/app/models/renalware/hd/session_forms/batch_compile_pdfs.rb +1 -1
- data/app/models/renalware/hd/session_forms/pdf_renderer.rb +1 -1
- data/app/models/renalware/hd/sessions/auditable_session_collection.rb +4 -1
- data/app/models/renalware/hd/station.rb +2 -1
- data/app/models/renalware/letters/description.rb +2 -0
- data/app/models/renalware/letters/html_renderer.rb +1 -1
- data/app/models/renalware/letters/letter.rb +1 -1
- data/app/models/renalware/letters/part/prescriptions.rb +12 -3
- data/app/models/renalware/letters/pdf_letter_cache.rb +1 -1
- data/app/models/renalware/letters/printing/batch_compile_pdfs.rb +1 -1
- data/app/models/renalware/letters/printing/duplex_interleaved_pdf_renderer.rb +1 -1
- data/app/models/renalware/letters/recipient_address_pdf_renderer.rb +1 -1
- data/app/models/renalware/letters/recipient_params_processor.rb +1 -1
- data/app/models/renalware/low_clearance/profile.rb +5 -2
- data/app/models/renalware/medications/prescription.rb +4 -6
- data/app/models/renalware/messaging/internal/message_form.rb +1 -0
- data/app/models/renalware/messaging/internal/message_form_builder.rb +2 -1
- data/app/models/renalware/pathology/code_group.rb +3 -1
- data/app/models/renalware/pathology/code_group_membership.rb +4 -1
- data/app/models/renalware/pathology/current_observations_for_descriptions_query.rb +3 -3
- data/app/models/renalware/pathology/measurement_unit.rb +13 -0
- data/app/models/renalware/pathology/nearest_observations_query.rb +44 -0
- data/app/models/renalware/pathology/observation_description.rb +23 -5
- data/app/models/renalware/pathology/observation_descriptions_by_code_query.rb +1 -1
- data/app/models/renalware/pathology/observation_requests_attributes_builder.rb +45 -5
- data/app/models/renalware/pathology/observations_jsonb_serializer.rb +1 -1
- data/app/models/renalware/pathology/observations_within_date_range_query.rb +1 -1
- data/app/models/renalware/patient.rb +22 -4
- data/app/models/renalware/patients/alert.rb +1 -0
- data/app/models/renalware/patients/bookmark.rb +2 -2
- data/app/models/renalware/patients/ingestion/update_master_patient_index.rb +1 -0
- data/app/models/renalware/patients/mdm_menu.rb +41 -0
- data/app/models/renalware/patients/mdm_patients_query.rb +1 -1
- data/app/models/renalware/patients/patient_hospital_identifiers.rb +1 -0
- data/app/models/renalware/patients/search_query.rb +1 -1
- data/app/models/renalware/patients/worry.rb +5 -2
- data/app/models/renalware/pd.rb +2 -0
- data/app/models/renalware/pd/adequacy_calculated_attributes.rb +159 -0
- data/app/models/renalware/pd/adequacy_result.rb +76 -0
- data/app/models/renalware/pd/apd/glucose_calculator.rb +1 -0
- data/app/models/renalware/pd/mdm_patients_query.rb +1 -1
- data/app/models/renalware/pd/patient.rb +4 -0
- data/app/models/renalware/pd/pet_dextrose_concentration.rb +17 -0
- data/app/models/renalware/pd/pet_result.rb +92 -0
- data/app/models/renalware/pd/unified_pet_adequacy_form.rb +46 -0
- data/app/models/renalware/problems/problem.rb +7 -2
- data/app/models/renalware/renal/aki_alert.rb +4 -1
- data/app/models/renalware/renal/profile.rb +4 -1
- data/app/models/renalware/renal/registry/preflight_checks/missing_esrf_query.rb +50 -0
- data/app/models/renalware/snippets/duplicate_snippet_title_generator.rb +1 -0
- data/app/models/renalware/snippets/snippet_query.rb +1 -1
- data/app/models/renalware/surveys/question.rb +1 -2
- data/app/models/renalware/system/column_definition.rb +43 -0
- data/app/models/renalware/system/filter_definition.rb +29 -0
- data/app/models/renalware/system/update_user.rb +5 -0
- data/app/models/renalware/system/version.rb +11 -0
- data/app/models/renalware/system/view_metadata.rb +25 -0
- data/app/models/renalware/transplants/donation.rb +5 -3
- data/app/models/renalware/transplants/donor_followup.rb +4 -3
- data/app/models/renalware/transplants/donor_operation.rb +4 -2
- data/app/models/renalware/transplants/donor_workup.rb +4 -2
- data/app/models/renalware/transplants/failure_cause_description.rb +1 -1
- data/app/models/renalware/transplants/mdm_patients_query.rb +2 -2
- data/app/models/renalware/transplants/patient.rb +1 -1
- data/app/models/renalware/transplants/recipient_followup.rb +6 -5
- data/app/models/renalware/transplants/recipient_operation.rb +5 -2
- data/app/models/renalware/transplants/recipient_workup.rb +5 -2
- data/app/models/renalware/transplants/recipient_workup_builder.rb +1 -0
- data/app/models/renalware/transplants/registration.rb +6 -5
- data/app/models/renalware/transplants/registration_status.rb +1 -1
- data/app/models/renalware/transplants/registrations/wait_list_query.rb +4 -4
- data/app/models/renalware/transplants/rejection_episode.rb +1 -1
- data/app/models/renalware/ukrdc/{batch_number.rb → batch.rb} +1 -1
- data/app/models/renalware/ukrdc/create_encrypted_patient_xml_files.rb +7 -10
- data/app/models/renalware/ukrdc/create_patient_xml_file.rb +3 -4
- data/app/models/renalware/ukrdc/housekeeping/remove_old_export_archive_folders.rb +3 -3
- data/app/models/renalware/ukrdc/housekeeping/remove_stale_files.rb +2 -2
- data/app/models/renalware/ukrdc/incoming/import_surveys.rb +1 -2
- data/app/models/renalware/ukrdc/measurement_unit.rb +21 -0
- data/app/models/renalware/ukrdc/outgoing/rendering/lab_order.rb +30 -2
- data/app/models/renalware/ukrdc/outgoing/rendering/patient_number.rb +1 -1
- data/app/models/renalware/ukrdc/paths.rb +1 -1
- data/app/models/renalware/ukrdc/transmission_log.rb +3 -2
- data/app/models/renalware/ukrdc/treatment_timeline/prepare_tables.rb +1 -1
- data/app/models/renalware/ukrdc/treatment_timeline/remap_model_table_names_to_their_prepared_equivalents.rb +1 -1
- data/app/models/renalware/user.rb +10 -0
- data/app/pdfs/renalware/events/event_pdf.rb +1 -0
- data/app/policies/application_policy.rb +1 -1
- data/app/policies/renalware/events/advanced_care_plan_policy.rb +10 -0
- data/app/policies/renalware/events/clinical_frailty_score_policy.rb +10 -0
- data/app/policies/renalware/medications/prescription_policy.rb +35 -0
- data/app/policies/renalware/pd/adequacy_result_policy.rb +15 -0
- data/app/policies/renalware/pd/pet_result_policy.rb +15 -0
- data/app/policies/renalware/renal/registry_preflight_check_policy.rb +4 -0
- data/app/policies/renalware/system/view_metadata_policy.rb +17 -0
- data/app/presenters/concerns/renalware/accountable_presentation.rb +33 -0
- data/app/presenters/renalware/clinical/profile_presenter.rb +1 -0
- data/app/presenters/renalware/clinics/visit_presenter.rb +11 -0
- data/app/presenters/renalware/events/event_presenter.rb +11 -0
- data/app/presenters/renalware/hd/dashboard_presenter.rb +1 -0
- data/app/presenters/renalware/hd/profile_presenter.rb +1 -0
- data/app/presenters/renalware/hd/scheduling/diary_presenter.rb +1 -0
- data/app/presenters/renalware/hd/session_presenter.rb +1 -0
- data/app/presenters/renalware/hd/unmet_preferences_presenter.rb +1 -1
- data/app/presenters/renalware/mdm_patients_presenter.rb +1 -0
- data/app/presenters/renalware/mdm_presenter.rb +11 -0
- data/app/presenters/renalware/pathology/results_presenter.rb +1 -2
- data/app/presenters/renalware/pd/dashboard_presenter.rb +10 -2
- data/app/presenters/renalware/renal/clinical_summary_presenter.rb +9 -6
- data/app/presenters/renalware/ukrdc/patient_presenter.rb +1 -0
- data/app/presenters/renalware/user_session_presenter.rb +44 -0
- data/app/validators/renalware/patients/nhs_number_validator.rb +88 -0
- data/app/values/renalware/address.rb +1 -0
- data/app/views/renalware/accesses/assessments/show.html.slim +1 -1
- data/app/views/renalware/accesses/procedures/show.html.slim +1 -1
- data/app/views/renalware/accesses/profiles/show.html.slim +1 -1
- data/app/views/renalware/admin/cache/show.html.slim +36 -0
- data/app/views/renalware/admin/playgrounds/show.html.slim +5 -6
- data/app/views/renalware/admin/users/edit.html.slim +9 -0
- data/app/views/renalware/admin/users/index.html.slim +6 -0
- data/app/views/renalware/admissions/admissions/_filters.html.slim +8 -16
- data/app/views/renalware/admissions/consults/_form.html.slim +19 -18
- data/app/views/renalware/clinical/allergies/_list.html.slim +3 -1
- data/app/views/renalware/clinical/profiles/show.html.slim +11 -1
- data/app/views/renalware/clinics/clinic_visits/_table.html.slim +2 -0
- data/app/views/renalware/clinics/clinic_visits/_table_row.html.slim +2 -0
- data/app/views/renalware/dashboard/dashboards/show.html.slim +1 -0
- data/app/views/renalware/dashboard/letters/_letter.html.slim +1 -1
- data/app/views/renalware/directory/people/show.html.slim +1 -1
- data/app/views/renalware/events/advanced_care_plans/_cell.html.slim +2 -0
- data/app/views/renalware/events/advanced_care_plans/_inputs.html.slim +4 -0
- data/app/views/renalware/events/advanced_care_plans/_toggled_cell.html.slim +8 -0
- data/app/views/renalware/events/clinical_frailty_score/_cell.html.slim +2 -0
- data/app/views/renalware/events/clinical_frailty_score/_inputs.html.slim +4 -0
- data/app/views/renalware/events/clinical_frailty_score/_toggled_cell.html.slim +8 -0
- data/app/views/renalware/events/events/_table.html.slim +1 -1
- data/app/views/renalware/hd/current_profile/_show.html.slim +1 -1
- data/app/views/renalware/hd/current_profile/show.html.slim +1 -1
- data/app/views/renalware/hd/prescription_administrations/_form.html.slim +3 -1
- data/app/views/renalware/hd/prescription_administrations/_row.html.slim +1 -1
- data/app/views/renalware/hd/prescription_administrations/new.js.erb +1 -1
- data/app/views/renalware/hd/protocols/_protocol.pdf.slim +39 -38
- data/app/views/renalware/hd/protocols/_virology.html.slim +4 -5
- data/app/views/renalware/hd/scheduling/diary_slots/_slot.html.slim +2 -1
- data/app/views/renalware/hd/sessions/_show.html.slim +1 -1
- data/app/views/renalware/hd/witnesses/_form.html.slim +4 -2
- data/app/views/renalware/letters/contacts/_contact.html.slim +1 -1
- data/app/views/renalware/letters/electronic_receipts/_table.html.slim +1 -1
- data/app/views/renalware/letters/letters/_form.html.slim +1 -1
- data/app/views/renalware/letters/letters/index.html.slim +4 -0
- data/app/views/renalware/letters/parts/_prescriptions.html.slim +4 -0
- data/app/views/renalware/low_clearance/dashboards/show.html.slim +10 -0
- data/app/views/renalware/mdm/_pathology.html.slim +0 -1
- data/app/views/renalware/mdm/_prescriptions.html.slim +4 -13
- data/app/views/renalware/mdm/prescriptions/_table.html.slim +3 -1
- data/app/views/renalware/mdm/show.html.slim +1 -1
- data/app/views/renalware/medications/prescriptions/_current_hd.html.slim +13 -0
- data/app/views/renalware/medications/prescriptions/_filter_form.html.slim +26 -13
- data/app/views/renalware/medications/prescriptions/_form.html.slim +3 -2
- data/app/views/renalware/medications/prescriptions/_options.html.slim +3 -3
- data/app/views/renalware/medications/prescriptions/_table.html.slim +5 -4
- data/app/views/renalware/medications/prescriptions/_tables.html.slim +13 -16
- data/app/views/renalware/medications/prescriptions/index.html.slim +6 -5
- data/app/views/renalware/messaging/internal/messages/_form.html.slim +3 -0
- data/app/views/renalware/messaging/internal/messages/index.html.slim +36 -0
- data/app/views/renalware/navigation/_mdms.html.slim +5 -0
- data/app/views/renalware/navigation/_menu.html.slim +1 -0
- data/app/views/renalware/navigation/_pd.html.slim +5 -0
- data/app/views/renalware/navigation/_renal.html.slim +1 -0
- data/app/views/renalware/navigation/_sign_out.html.slim +5 -1
- data/app/views/renalware/navigation/{_super_admin.html.slim → _super_admin.html.slim.dead} +0 -0
- data/app/views/renalware/pathology/charts/show.html.slim +11 -0
- data/app/views/renalware/pathology/code_groups/edit.html.slim +5 -5
- data/app/views/renalware/pathology/code_groups/index.html.slim +4 -5
- data/app/views/renalware/pathology/code_groups/show.html.slim +25 -26
- data/app/views/renalware/pathology/current_observation_results/index.html.slim +6 -0
- data/app/views/renalware/pathology/historical_observation_results/_table.html.slim +4 -3
- data/app/views/renalware/pathology/historical_observation_results/index.html.slim +1 -1
- data/app/views/renalware/pathology/observation_descriptions/_filters.html.slim +14 -0
- data/app/views/renalware/pathology/observation_descriptions/edit.html.slim +21 -0
- data/app/views/renalware/pathology/observation_descriptions/index.html.slim +38 -0
- data/app/views/renalware/pathology/observations/_diff.html.slim +1 -1
- data/app/views/renalware/pathology/requests/requests/request_form/_crs_form.html.slim +1 -1
- data/app/views/renalware/patients/alerts/_list.html.slim +1 -0
- data/app/views/renalware/patients/mdms/_filters.html.slim +38 -0
- data/app/views/renalware/patients/mdms/_table.html.slim +72 -0
- data/app/views/renalware/patients/mdms/show.html.slim +18 -0
- data/app/views/renalware/patients/patients/show.html.slim +1 -1
- data/app/views/renalware/patients/patients/show/_primary_care_physician.html.slim +1 -1
- data/app/views/renalware/patients/side_menu/_general.html.slim +4 -0
- data/app/views/renalware/patients/worryboard/_filters.html.slim +18 -13
- data/app/views/renalware/pd/_exit_site_infections.html.slim +4 -0
- data/app/views/renalware/pd/_peritonitis_episodes.html.slim +14 -11
- data/app/views/renalware/pd/adequacy_completions/_filters.html.slim +19 -0
- data/app/views/renalware/pd/adequacy_completions/index.html.slim +4 -0
- data/app/views/renalware/pd/adequacy_results/_form_fields.html.slim +9 -0
- data/app/views/renalware/pd/adequacy_results/_table.html.slim +72 -0
- data/app/views/renalware/pd/adequacy_results/edit.html.slim +89 -0
- data/app/views/renalware/pd/adequacy_results/index.js.erb +1 -0
- data/app/views/renalware/pd/adequacy_results/new.html.slim +8 -0
- data/app/views/renalware/pd/dashboards/show.html.slim +3 -0
- data/app/views/renalware/pd/dashboards/show/_page_actions.html.slim +10 -3
- data/app/views/renalware/pd/dashboards/show/_pet_adequacies.html.slim +1 -1
- data/app/views/renalware/pd/peritonitis_episodes/show.html.slim +8 -6
- data/app/views/renalware/pd/pet_completions/_filters.html.slim +24 -0
- data/app/views/renalware/pd/pet_completions/index.html.slim +4 -0
- data/app/views/renalware/pd/pet_results/_form_fields.html.slim +12 -0
- data/app/views/renalware/pd/pet_results/_pathology_results.html.slim +36 -0
- data/app/views/renalware/pd/pet_results/_table.html.slim +62 -0
- data/app/views/renalware/pd/pet_results/edit.html.slim +35 -0
- data/app/views/renalware/pd/pet_results/index.js.erb +1 -0
- data/app/views/renalware/pd/pet_results/new.html.slim +8 -0
- data/app/views/renalware/pd/unified_pet_adequacies/_form.html.slim +22 -0
- data/app/views/renalware/pd/unified_pet_adequacies/new.html.slim +2 -0
- data/app/views/renalware/renal/profiles/show.html.slim +1 -1
- data/app/views/renalware/renal/registry_preflight_checks/_filters.html.slim +5 -3
- data/app/views/renalware/renal/registry_preflight_checks/_navigation.html.slim +1 -0
- data/app/views/renalware/renal/registry_preflight_checks/deaths.html.slim +2 -1
- data/app/views/renalware/renal/registry_preflight_checks/missing_esrf.html.slim +12 -0
- data/app/views/renalware/renal/registry_preflight_checks/patients.html.slim +1 -2
- data/app/views/renalware/shared/_fieldset.html.slim +1 -2
- data/app/views/renalware/shared/_magellan_block.html.slim +1 -2
- data/app/views/renalware/surveys/dashboards/show.html.slim +2 -2
- data/app/views/renalware/system/view_metadata/_columns_table.html.slim +44 -0
- data/app/views/renalware/system/view_metadata/_filters_form.html.slim +19 -0
- data/app/views/renalware/system/view_metadata/_versions.html.slim +23 -0
- data/app/views/renalware/system/view_metadata/edit.html.slim +66 -0
- data/app/views/renalware/transplants/donor_workups/show.html.slim +1 -1
- data/app/views/renalware/transplants/mdm/_bottom.html.slim +3 -1
- data/app/views/renalware/transplants/mdm/_prescriptions.html.slim +6 -22
- data/app/views/renalware/transplants/recipient_followups/show.html.slim +1 -1
- data/app/views/renalware/transplants/recipient_operations/show.html.slim +1 -1
- data/app/views/renalware/transplants/recipient_workups/show.html.slim +1 -1
- data/app/views/renalware/transplants/registrations/show.html.slim +1 -1
- data/app/views/renalware/transplants/wait_lists/show.html.slim +1 -1
- data/app/views/renalware/users/_filters.html.slim +11 -0
- data/app/views/renalware/users/index.html.slim +24 -0
- data/config/initializers/core_extensions.rb +2 -2
- data/config/initializers/delayed_job.rb +1 -1
- data/config/initializers/inflections.rb +9 -0
- data/config/initializers/pagy.rb +5 -0
- data/config/initializers/paper_trail.rb +1 -1
- data/config/initializers/simple_form_wrappers.rb +14 -9
- data/config/initializers/wicked_pdf.rb +12 -0
- data/config/locales/en-GB.yml +1 -1
- data/config/locales/renalware/clinical/allergies.en.yml +1 -0
- data/config/locales/renalware/events/advanced_care_plan.en.yml +12 -0
- data/config/locales/renalware/events/biopsy.en.yml +2 -0
- data/config/locales/renalware/events/clinical_frailty_score.en.yml +16 -0
- data/config/locales/renalware/events/clinical_frailty_score_component.en.yml +8 -0
- data/config/locales/renalware/medications/tabbed_prescriptions_list_component.yml +15 -0
- data/config/locales/renalware/navigation/renal.en.yml +1 -0
- data/config/locales/renalware/nhs_number.en.yml +6 -0
- data/config/locales/renalware/patients/side_menu.en.yml +1 -0
- data/config/locales/renalware/pd/adequacy_result.en.yml +9 -0
- data/config/locales/renalware/pd/dashboard.en.yml +3 -0
- data/config/locales/renalware/pd/pet_result.en.yml +23 -0
- data/config/locales/renalware/renal/registry.en.yml +1 -0
- data/config/permissions.yml +1 -0
- data/config/routes.rb +1 -0
- data/config/routes/messaging.rb +9 -1
- data/config/routes/pathology.rb +7 -0
- data/config/routes/patients.rb +1 -0
- data/config/routes/pd.rb +5 -0
- data/config/routes/renal.rb +1 -0
- data/config/routes/system.rb +5 -1
- data/config/routes/users.rb +3 -0
- data/db/functions/convert_to_float_with_explicit_return_v01.sql +18 -0
- data/db/functions/generate_secure_id_v01.sql +1 -1
- data/db/functions/update_current_observation_set_from_trigger_v05.sql +92 -0
- data/db/functions/update_pathology_observations_nresult_from_trigger_v01.sql +13 -0
- data/db/migrate/20200122182018_update_patient_current_modalities.rb +7 -0
- data/db/migrate/20200122182036_create_transplant_mdm_patients.rb +7 -0
- data/db/migrate/20200122190909_create_view_metadata.rb +44 -0
- data/db/migrate/20200131133223_create_hd_mdm_patients.rb +7 -0
- data/db/migrate/20200205185151_add_columns_to_system_view_metadata.rb +13 -0
- data/db/migrate/20200219113324_create_supportive_care_mdm_patients_view.rb +7 -0
- data/db/migrate/20200226145010_add_unique_indexes.rb +47 -0
- data/db/migrate/20200408131217_associate_batch_with_ukrdc_transmission_log.rb +15 -0
- data/db/migrate/20200421082715_add_body_surface_area_to_clinic_visits.rb +8 -0
- data/db/migrate/20200421132911_create_pd_pet_dextrose_concentrations.rb +13 -0
- data/db/migrate/20200421143546_create_pet_results.rb +66 -0
- data/db/migrate/20200427123229_create_adequacy_results.rb +54 -0
- data/db/migrate/20200616115709_add_height_weight_to_pd_adequacy_results.rb +8 -0
- data/db/migrate/20200618144228_add_feature_flags_to_users.rb +14 -0
- data/db/migrate/20200622120232_add_limits_to_path_obs_descriptions.rb +18 -0
- data/db/migrate/20200626081248_overload_convert_to_float_function.rb +13 -0
- data/db/migrate/20200626090256_add_nresult_to_pathology_observations.rb +29 -0
- data/db/migrate/20200628094228_add_prescriber_to_users.rb +14 -0
- data/db/migrate/20200812074223_add_public_flag_to_messages.rb +18 -0
- data/db/migrate/20200815150303_create_system_versions.rb +16 -0
- data/db/migrate/20200817085618_create_pd_mdm_patients.rb +7 -0
- data/db/migrate/20200817103930_create_low_clearance_mdm_patients.rb +7 -0
- data/db/migrate/20201001144512_update_fn_update_current_obs_set_triggerv05.rb +13 -0
- data/db/migrate/20201001145452_add_position_to_letter_descriptions.rb +5 -0
- data/db/migrate/20201009090959_make_drug_types_unique.rb +8 -0
- data/db/migrate/20201012160414_add_suggested_measurement_unit_to_pathology_observation_descriptions.rb +18 -0
- data/db/migrate/20201012171428_create_ukrdc_measurement_units.rb +18 -0
- data/db/migrate/20201015160542_add_position_to_drug_types.rb +31 -0
- data/db/migrate/20201020155510_add_bmi_to_clinic_visits.rb +28 -0
- data/db/migrate/20201020164524_update_pd_mdm_patients_view.rb +7 -0
- data/db/migrate/20201020170921_update_hd_mdm_patients_view.rb +7 -0
- data/db/migrate/20201020171139_update_low_clearance_mdm_patients_view.rb +7 -0
- data/db/migrate/20201021153832_update_supportive_care_mdm_patients_view.rb +7 -0
- data/db/migrate/20201021154809_update_transplant_mdm_patients_view.rb +7 -0
- data/db/migrate/20201023092859_remove_unused_indexes.rb +20 -0
- data/db/seeds/default/events/event_types.csv +2 -0
- data/db/seeds/default/system/seeds.rb +1 -0
- data/db/seeds/default/system/view_metadata.rb +91 -0
- data/db/seeds/default/ukrdc/measurement_units.csv +12 -0
- data/db/seeds/default/ukrdc/measurement_units.rb +15 -0
- data/db/seeds/default/ukrdc/seeds.rb +1 -0
- data/db/seeds/seeds_helper.rb +8 -2
- data/db/triggers/update_pathology_observations_nresult_trigger_v01.sql +11 -0
- data/db/views/hd_mdm_patients_v01.sql +69 -0
- data/db/views/hd_mdm_patients_v02.sql +70 -0
- data/db/views/low_clearance_mdm_patients_v01.sql +38 -0
- data/db/views/low_clearance_mdm_patients_v02.sql +39 -0
- data/db/views/patient_current_modalities_v02.sql +18 -0
- data/db/views/pd_mdm_patients_v01.sql +42 -0
- data/db/views/pd_mdm_patients_v02.sql +43 -0
- data/db/views/supportive_care_mdm_patients_v01.sql +28 -0
- data/db/views/supportive_care_mdm_patients_v02.sql +29 -0
- data/db/views/transplant_mdm_patients_v01.sql +46 -0
- data/db/views/transplant_mdm_patients_v02.sql +47 -0
- data/lib/renalware/configuration.rb +8 -0
- data/lib/renalware/engine.rb +8 -5
- data/lib/renalware/version_number.rb +10 -0
- data/lib/tasks/db.rake +9 -0
- data/lib/tasks/pd.rake +28 -0
- data/lib/tasks/renalware.rake +7 -1
- data/spec/factories/accesses/profiles.rb +1 -0
- data/spec/factories/drugs/drug_types.rb +5 -1
- data/spec/factories/events/events_types.rb +12 -0
- data/spec/factories/messaging/internal/messages.rb +1 -0
- data/spec/factories/patients/patients.rb +22 -1
- data/spec/factories/patients/practices.rb +1 -1
- data/spec/factories/patients/primary_care_physicians.rb +1 -1
- data/spec/factories/pd/adequacy_results.rb +16 -0
- data/spec/factories/pd/pet_results.rb +9 -0
- data/spec/factories/system/users.rb +1 -0
- data/spec/factories/system/view_metadata.rb +20 -0
- data/spec/support/capybara_helper.rb +2 -4
- data/spec/support/letters_spec_helper.rb +1 -1
- data/spec/support/matchers/validate_timeliness_of.rb +1 -1
- data/spec/support/pathology_spec_helper.rb +1 -2
- data/spec/support/policy_spec_helper.rb +12 -0
- data/spec/support/shared_examples/supersedable_examples.rb +2 -2
- data/vendor/assets/javascripts/foundation/foundation.alert.js +43 -0
- data/vendor/assets/javascripts/foundation/foundation.dropdown.js +468 -0
- data/vendor/assets/javascripts/foundation/foundation.js +727 -0
- data/vendor/assets/javascripts/foundation/foundation.reveal.js +522 -0
- data/vendor/assets/javascripts/foundation/foundation.tab.js +247 -0
- data/vendor/assets/javascripts/foundation/foundation.tooltip.js +348 -0
- data/vendor/assets/javascripts/foundation/foundation.topbar.js +458 -0
- data/vendor/assets/stylesheets/foundation/_functions.scss +156 -0
- data/vendor/assets/stylesheets/foundation/components/_alert-boxes.scss +128 -0
- data/vendor/assets/stylesheets/foundation/components/_buttons.scss +261 -0
- data/vendor/assets/stylesheets/foundation/components/_dropdown-buttons.scss +130 -0
- data/vendor/assets/stylesheets/foundation/components/_dropdown.scss +269 -0
- data/vendor/assets/stylesheets/foundation/components/_forms.scss +601 -0
- data/vendor/assets/stylesheets/foundation/components/_global.scss +566 -0
- data/vendor/assets/stylesheets/foundation/components/_grid.scss +292 -0
- data/vendor/assets/stylesheets/foundation/components/_labels.scss +106 -0
- data/vendor/assets/stylesheets/foundation/components/_pagination.scss +163 -0
- data/vendor/assets/stylesheets/foundation/components/_panels.scss +107 -0
- data/vendor/assets/stylesheets/foundation/components/_reveal.scss +212 -0
- data/vendor/assets/stylesheets/foundation/components/_side-nav.scss +120 -0
- data/vendor/assets/stylesheets/foundation/components/_split-buttons.scss +203 -0
- data/vendor/assets/stylesheets/foundation/components/_sub-nav.scss +125 -0
- data/vendor/assets/stylesheets/foundation/components/_tables.scss +135 -0
- data/vendor/assets/stylesheets/foundation/components/_tabs.scss +142 -0
- data/vendor/assets/stylesheets/foundation/components/_tooltips.scss +142 -0
- data/vendor/assets/stylesheets/foundation/components/_top-bar.scss +745 -0
- data/vendor/assets/stylesheets/foundation/components/_type.scss +525 -0
- data/vendor/assets/stylesheets/foundation/components/_visibility.scss +425 -0
- metadata +293 -90
- data/app/components/renalware/events/biopsies_component.rb +0 -20
- data/app/views/renalware/pd/infection_organisms/_edit.html.slim.obsolete +0 -16
- data/app/views/renalware/transplants/donor_operations/_sections_nav.html.slim +0 -11
- data/app/views/renalware/transplants/donor_workups/_sections_nav.html.slim +0 -15
- data/app/views/renalware/transplants/recipient_operations/_sections_nav.html.slim +0 -14
- data/app/views/renalware/transplants/recipient_workups/_sections_nav.html.slim +0 -15
- data/lib/core_extensions/active_record/sort.rb +0 -52
- data/lib/renalware/version.rb +0 -5
- data/spec/support/pages/accesses/procedure_page.rb +0 -53
- data/spec/support/pages/accesses/profile_page.rb +0 -45
- data/spec/support/pages/admissions/consults_page.rb +0 -26
- data/spec/support/pages/clinical/allergy_page.rb +0 -74
- data/spec/support/pages/clinical/profile_page.rb +0 -28
- data/spec/support/pages/hd/prescription_administration_dialog.rb +0 -132
- data/spec/support/pages/letters/form.rb +0 -63
- data/spec/support/pages/letters/mailshots/form.rb +0 -58
- data/spec/support/pages/letters/patient_letters.rb +0 -20
- data/spec/support/pages/low_clearance/profile_page.rb +0 -70
- data/spec/support/pages/medications/home_delivery_dialog.rb +0 -77
- data/spec/support/pages/medications/prescription_fom.rb +0 -62
- data/spec/support/pages/page_object.rb +0 -10
@@ -0,0 +1,20 @@
|
|
1
|
+
class RemoveUnusedIndexes < ActiveRecord::Migration[6.0]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
# Covered by index_admission_requests_on_patient_id_and_deleted_at
|
5
|
+
remove_index(:admission_requests, :patient_id)
|
6
|
+
|
7
|
+
# Covered by index_drug_homecare_forms_on_drug_type_id_and_supplier_id
|
8
|
+
remove_index(:drug_homecare_forms, :drug_type_id)
|
9
|
+
|
10
|
+
# Covered by survey_responses_compound_index (answered_on, patient_id, question_id)
|
11
|
+
remove_index(:survey_responses, :answered_on)
|
12
|
+
|
13
|
+
# Covered by idx_dashboard_component_position (dashboard_id, position)
|
14
|
+
remove_index(:system_dashboard_components, :dashboard_id)
|
15
|
+
|
16
|
+
# Covered by index_letter_mailshot_items_on_mailshot_id_and_letter_id
|
17
|
+
remove_index(:letter_mailshot_items, :mailshot_id)
|
18
|
+
end
|
19
|
+
end
|
20
|
+
end
|
@@ -6,3 +6,5 @@
|
|
6
6
|
"PD Line Change",,"pd_line_changes"
|
7
7
|
"Investigation","Renalware::Events::Investigation","investigations"
|
8
8
|
"Vaccination","Renalware::Virology::Vaccination","vaccinations"
|
9
|
+
"Advanced Care Plan","Renalware::Events::AdvancedCarePlan","advanced_care_plans"
|
10
|
+
"Clinical Frailty Score","Renalware::Events::ClinicalFrailtyScore","clinical_frailty_score"
|
@@ -0,0 +1,91 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module Renalware
|
4
|
+
log "Adding View Metadata" do
|
5
|
+
Renalware::System::ViewMetadata.find_or_create_by!(
|
6
|
+
view_name: "transplant_mdm_patients",
|
7
|
+
scope: "transplant",
|
8
|
+
category: "mdm",
|
9
|
+
schema_name: "renalware"
|
10
|
+
) do |view|
|
11
|
+
view.slug = "all"
|
12
|
+
view.title = "All"
|
13
|
+
view.position = 1
|
14
|
+
view.filters = [
|
15
|
+
{ code: "sex", type: "list" },
|
16
|
+
{ code: "tx_status", type: "list" },
|
17
|
+
{ code: "on_worryboard", type: "list" },
|
18
|
+
{ code: "tx_in_past_3m", type: "list" },
|
19
|
+
{ code: "tx_in_past_12m", type: "list" },
|
20
|
+
{ code: "patient_name", type: "search" }
|
21
|
+
]
|
22
|
+
view.columns = [].to_json # empty will display all
|
23
|
+
end
|
24
|
+
|
25
|
+
Renalware::System::ViewMetadata.find_or_create_by!(
|
26
|
+
view_name: "hd_mdm_patients",
|
27
|
+
scope: "hd",
|
28
|
+
category: "mdm",
|
29
|
+
slug: "all",
|
30
|
+
schema_name: "renalware"
|
31
|
+
) do |view|
|
32
|
+
view.title = "All"
|
33
|
+
view.position = 1
|
34
|
+
view.filters = [
|
35
|
+
{ code: :schedule, type: :list },
|
36
|
+
{ code: :hospital_unit, type: :list },
|
37
|
+
{ code: :named_nurse, type: :list },
|
38
|
+
{ code: :on_worryboard, type: :list }
|
39
|
+
]
|
40
|
+
# schedule: :list,
|
41
|
+
# hospital_unit: :list,
|
42
|
+
# named_nurse: :list,
|
43
|
+
# on_worryboard: :list
|
44
|
+
view.columns = [].to_json # empty will display all
|
45
|
+
end
|
46
|
+
|
47
|
+
Renalware::System::ViewMetadata.find_or_create_by!(
|
48
|
+
view_name: "supportive_care_mdm_patients",
|
49
|
+
scope: "supportive_care",
|
50
|
+
category: "mdm",
|
51
|
+
slug: "all",
|
52
|
+
schema_name: "renalware"
|
53
|
+
) do |view|
|
54
|
+
view.title = "All"
|
55
|
+
view.position = 1
|
56
|
+
view.filters = [{ code: :on_worryboard, type: :list }].to_json
|
57
|
+
view.columns = [].to_json
|
58
|
+
end
|
59
|
+
|
60
|
+
Renalware::System::ViewMetadata.find_or_create_by!(
|
61
|
+
view_name: "pd_mdm_patients",
|
62
|
+
scope: "pd",
|
63
|
+
category: "mdm",
|
64
|
+
slug: "all",
|
65
|
+
schema_name: "renalware"
|
66
|
+
) do |view|
|
67
|
+
view.title = "All"
|
68
|
+
view.position = 1
|
69
|
+
view.filters = [{ code: :on_worryboard, type: :list }]
|
70
|
+
view.columns = [].to_json
|
71
|
+
end
|
72
|
+
|
73
|
+
Renalware::System::ViewMetadata.find_or_create_by!(
|
74
|
+
view_name: "low_clearance_mdm_patients",
|
75
|
+
scope: "low_clearance",
|
76
|
+
category: "mdm",
|
77
|
+
slug: "all",
|
78
|
+
schema_name: "renalware"
|
79
|
+
) do |view|
|
80
|
+
view.title = "All"
|
81
|
+
view.position = 1
|
82
|
+
view.filters = [
|
83
|
+
{ code: :on_worryboard, type: :list },
|
84
|
+
{ code: :tx_candidate, type: :list },
|
85
|
+
{ code: :hgb_range, type: :list },
|
86
|
+
{ code: :urea_range, type: :list }
|
87
|
+
]
|
88
|
+
view.columns = [].to_json
|
89
|
+
end
|
90
|
+
end
|
91
|
+
end
|
@@ -0,0 +1,15 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module Renalware
|
4
|
+
module UKRDC
|
5
|
+
log "Adding UKRDC measurement units" do
|
6
|
+
file_path = File.join(File.dirname(__FILE__), "measurement_units.csv")
|
7
|
+
|
8
|
+
CSV.foreach(file_path, headers: true) do |row|
|
9
|
+
MeasurementUnit.find_or_create_by!(name: row["name"]) do |mu|
|
10
|
+
mu.description = row["description"]
|
11
|
+
end
|
12
|
+
end
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
data/db/seeds/seeds_helper.rb
CHANGED
@@ -2,8 +2,14 @@
|
|
2
2
|
|
3
3
|
module SeedsHelper
|
4
4
|
def without_papertrail_versioning_for(klasses)
|
5
|
-
Array(klasses).each
|
5
|
+
Array(klasses).each do |klass|
|
6
|
+
klass.paper_trail.disable if klass.paper_trail.respond_to?(:disable)
|
7
|
+
end
|
8
|
+
|
6
9
|
yield
|
7
|
-
|
10
|
+
|
11
|
+
Array(klasses).each do |klass|
|
12
|
+
klass.paper_trail.enable if klass.paper_trail.respond_to?(:enable)
|
13
|
+
end
|
8
14
|
end
|
9
15
|
end
|
@@ -0,0 +1,11 @@
|
|
1
|
+
-- Create the trigger which will call out function every time a row in pathology_observations
|
2
|
+
-- is inserted or updated
|
3
|
+
DROP TRIGGER IF EXISTS update_pathology_observations_nresult_trigger ON pathology_observations;
|
4
|
+
CREATE TRIGGER update_pathology_observations_nresult_trigger
|
5
|
+
BEFORE INSERT OR UPDATE
|
6
|
+
ON pathology_observations
|
7
|
+
FOR EACH ROW EXECUTE PROCEDURE update_pathology_observations_nresult_from_trigger();
|
8
|
+
|
9
|
+
COMMENT ON TRIGGER update_pathology_observations_nresult_trigger ON pathology_observations IS
|
10
|
+
'When a row is updated or inserted into pathology_observations, call a function to try and
|
11
|
+
coerce the result into a new float column which can be more easily consumed for graphing etc';
|
@@ -0,0 +1,69 @@
|
|
1
|
+
SELECT
|
2
|
+
p.id,
|
3
|
+
p.secure_id,
|
4
|
+
(upper(p.family_name::text) || ', '::text) || p.given_name::text AS patient_name,
|
5
|
+
p.nhs_number,
|
6
|
+
p.local_patient_id AS hospital_numbers,
|
7
|
+
p.sex,
|
8
|
+
p.born_on,
|
9
|
+
rprof.esrf_on,
|
10
|
+
latest_op.performed_on AS last_operation_date,
|
11
|
+
date_part('year'::text, age(p.born_on::timestamp with time zone))::integer AS age,
|
12
|
+
mx.modality_name,
|
13
|
+
case when pw.id > 0 then true else false end as on_worryboard,
|
14
|
+
at.name AS access,
|
15
|
+
ap.started_on AS access_date,
|
16
|
+
aplantype.name AS access_plan,
|
17
|
+
aplan.created_at::date AS plan_date,
|
18
|
+
txrsd.name AS tx_status,
|
19
|
+
unit.name AS hospital_unit,
|
20
|
+
unit.unit_code AS dialysing_at,
|
21
|
+
(named_nurses.family_name::text || ', '::text) || named_nurses.given_name::text AS named_nurse,
|
22
|
+
(((hdp.document -> 'transport'::text) ->> 'has_transport'::text) || ': '::text) || ((hdp.document -> 'transport'::text) ->> 'type'::text) AS transport,
|
23
|
+
(sched.days_text || ' '::text) || upper(diurnal.code::text) AS schedule,
|
24
|
+
(pa."values" -> 'HGB'::text) ->> 'result'::text AS hgb,
|
25
|
+
((pa."values" -> 'HGB'::text) ->> 'observed_at'::text)::date AS hgb_date,
|
26
|
+
(pa."values" -> 'PHOS'::text) ->> 'result'::text AS phos,
|
27
|
+
((pa."values" -> 'PHOS'::text) ->> 'observed_at'::text)::date AS phos_date,
|
28
|
+
(pa."values" -> 'POT'::text) ->> 'result'::text AS pot,
|
29
|
+
((pa."values" -> 'POT'::text) ->> 'observed_at'::text)::date AS pot_date,
|
30
|
+
(pa."values" -> 'PTHI'::text) ->> 'result'::text AS pthi,
|
31
|
+
((pa."values" -> 'PTHI'::text) ->> 'observed_at'::text)::date AS pthi_date,
|
32
|
+
(pa."values" -> 'URR'::text) ->> 'result'::text AS urr,
|
33
|
+
((pa."values" -> 'URR'::text) ->> 'observed_at'::text)::date AS urr_date
|
34
|
+
FROM patients p
|
35
|
+
JOIN patient_current_modalities mx ON mx.patient_id = p.id AND mx.modality_code::text = 'hd'::text
|
36
|
+
LEFT JOIN hd_profiles hdp ON hdp.patient_id = p.id AND hdp.deactivated_at IS NULL
|
37
|
+
LEFT JOIN hospital_units unit ON unit.id = hdp.hospital_unit_id
|
38
|
+
LEFT JOIN users named_nurses ON named_nurses.id = hdp.named_nurse_id
|
39
|
+
left join patient_worries pw on pw.patient_id = p.id
|
40
|
+
LEFT JOIN hd_schedule_definitions sched ON sched.id = hdp.schedule_definition_id
|
41
|
+
LEFT JOIN hd_diurnal_period_codes diurnal ON diurnal.id = sched.diurnal_period_id
|
42
|
+
LEFT JOIN pathology_current_observation_sets pa ON pa.patient_id = p.id
|
43
|
+
LEFT JOIN ( SELECT DISTINCT ON (access_profiles.patient_id) access_profiles.id,
|
44
|
+
access_profiles.patient_id,
|
45
|
+
access_profiles.formed_on,
|
46
|
+
access_profiles.started_on,
|
47
|
+
access_profiles.terminated_on,
|
48
|
+
access_profiles.type_id,
|
49
|
+
access_profiles.side,
|
50
|
+
access_profiles.notes,
|
51
|
+
access_profiles.created_by_id,
|
52
|
+
access_profiles.updated_by_id,
|
53
|
+
access_profiles.created_at,
|
54
|
+
access_profiles.updated_at,
|
55
|
+
access_profiles.decided_by_id
|
56
|
+
FROM access_profiles
|
57
|
+
WHERE access_profiles.terminated_on IS NULL
|
58
|
+
ORDER BY access_profiles.patient_id, access_profiles.created_at DESC) ap ON ap.patient_id = p.id
|
59
|
+
LEFT JOIN access_types at ON at.id = ap.type_id
|
60
|
+
LEFT JOIN access_plans aplan ON aplan.patient_id = p.id AND aplan.terminated_at IS NULL
|
61
|
+
LEFT JOIN access_plan_types aplantype ON aplantype.id = aplan.plan_type_id
|
62
|
+
LEFT JOIN transplant_registrations txr ON txr.patient_id = p.id
|
63
|
+
LEFT JOIN transplant_registration_statuses txrs ON txrs.registration_id = txr.id AND txrs.terminated_on IS NULL
|
64
|
+
LEFT JOIN transplant_registration_status_descriptions txrsd ON txrsd.id = txrs.description_id
|
65
|
+
LEFT JOIN renal_profiles rprof ON rprof.patient_id = p.id
|
66
|
+
LEFT JOIN ( SELECT DISTINCT ON (transplant_recipient_operations.patient_id) transplant_recipient_operations.patient_id,
|
67
|
+
transplant_recipient_operations.performed_on
|
68
|
+
FROM transplant_recipient_operations
|
69
|
+
ORDER BY transplant_recipient_operations.patient_id, transplant_recipient_operations.performed_on DESC) latest_op ON latest_op.patient_id = p.id;
|
@@ -0,0 +1,70 @@
|
|
1
|
+
SELECT
|
2
|
+
p.id,
|
3
|
+
p.secure_id,
|
4
|
+
(upper(p.family_name::text) || ', '::text) || p.given_name::text AS patient_name,
|
5
|
+
p.nhs_number,
|
6
|
+
p.local_patient_id AS hospital_numbers,
|
7
|
+
p.sex,
|
8
|
+
p.born_on,
|
9
|
+
rprof.esrf_on,
|
10
|
+
latest_op.performed_on AS last_operation_date,
|
11
|
+
date_part('year'::text, age(p.born_on::timestamp with time zone))::integer AS age,
|
12
|
+
mx.modality_name,
|
13
|
+
case when pw.id > 0 then true else false end as on_worryboard,
|
14
|
+
at.name AS access,
|
15
|
+
(select bmi from clinic_visits cv2 where cv2.patient_id = P.id and bmi > 0 order by date desc limit 1) as bmi,
|
16
|
+
ap.started_on AS access_date,
|
17
|
+
aplantype.name AS access_plan,
|
18
|
+
aplan.created_at::date AS plan_date,
|
19
|
+
txrsd.name AS tx_status,
|
20
|
+
unit.name AS hospital_unit,
|
21
|
+
unit.unit_code AS dialysing_at,
|
22
|
+
(named_nurses.family_name::text || ', '::text) || named_nurses.given_name::text AS named_nurse,
|
23
|
+
(((hdp.document -> 'transport'::text) ->> 'has_transport'::text) || ': '::text) || ((hdp.document -> 'transport'::text) ->> 'type'::text) AS transport,
|
24
|
+
(sched.days_text || ' '::text) || upper(diurnal.code::text) AS schedule,
|
25
|
+
(pa."values" -> 'HGB'::text) ->> 'result'::text AS hgb,
|
26
|
+
((pa."values" -> 'HGB'::text) ->> 'observed_at'::text)::date AS hgb_date,
|
27
|
+
(pa."values" -> 'PHOS'::text) ->> 'result'::text AS phos,
|
28
|
+
((pa."values" -> 'PHOS'::text) ->> 'observed_at'::text)::date AS phos_date,
|
29
|
+
(pa."values" -> 'POT'::text) ->> 'result'::text AS pot,
|
30
|
+
((pa."values" -> 'POT'::text) ->> 'observed_at'::text)::date AS pot_date,
|
31
|
+
(pa."values" -> 'PTHI'::text) ->> 'result'::text AS pthi,
|
32
|
+
((pa."values" -> 'PTHI'::text) ->> 'observed_at'::text)::date AS pthi_date,
|
33
|
+
(pa."values" -> 'URR'::text) ->> 'result'::text AS urr,
|
34
|
+
((pa."values" -> 'URR'::text) ->> 'observed_at'::text)::date AS urr_date
|
35
|
+
FROM patients p
|
36
|
+
JOIN patient_current_modalities mx ON mx.patient_id = p.id AND mx.modality_code::text = 'hd'::text
|
37
|
+
LEFT JOIN hd_profiles hdp ON hdp.patient_id = p.id AND hdp.deactivated_at IS NULL
|
38
|
+
LEFT JOIN hospital_units unit ON unit.id = hdp.hospital_unit_id
|
39
|
+
LEFT JOIN users named_nurses ON named_nurses.id = hdp.named_nurse_id
|
40
|
+
left join patient_worries pw on pw.patient_id = p.id
|
41
|
+
LEFT JOIN hd_schedule_definitions sched ON sched.id = hdp.schedule_definition_id
|
42
|
+
LEFT JOIN hd_diurnal_period_codes diurnal ON diurnal.id = sched.diurnal_period_id
|
43
|
+
LEFT JOIN pathology_current_observation_sets pa ON pa.patient_id = p.id
|
44
|
+
LEFT JOIN ( SELECT DISTINCT ON (access_profiles.patient_id) access_profiles.id,
|
45
|
+
access_profiles.patient_id,
|
46
|
+
access_profiles.formed_on,
|
47
|
+
access_profiles.started_on,
|
48
|
+
access_profiles.terminated_on,
|
49
|
+
access_profiles.type_id,
|
50
|
+
access_profiles.side,
|
51
|
+
access_profiles.notes,
|
52
|
+
access_profiles.created_by_id,
|
53
|
+
access_profiles.updated_by_id,
|
54
|
+
access_profiles.created_at,
|
55
|
+
access_profiles.updated_at,
|
56
|
+
access_profiles.decided_by_id
|
57
|
+
FROM access_profiles
|
58
|
+
WHERE access_profiles.terminated_on IS NULL
|
59
|
+
ORDER BY access_profiles.patient_id, access_profiles.created_at DESC) ap ON ap.patient_id = p.id
|
60
|
+
LEFT JOIN access_types at ON at.id = ap.type_id
|
61
|
+
LEFT JOIN access_plans aplan ON aplan.patient_id = p.id AND aplan.terminated_at IS NULL
|
62
|
+
LEFT JOIN access_plan_types aplantype ON aplantype.id = aplan.plan_type_id
|
63
|
+
LEFT JOIN transplant_registrations txr ON txr.patient_id = p.id
|
64
|
+
LEFT JOIN transplant_registration_statuses txrs ON txrs.registration_id = txr.id AND txrs.terminated_on IS NULL
|
65
|
+
LEFT JOIN transplant_registration_status_descriptions txrsd ON txrsd.id = txrs.description_id
|
66
|
+
LEFT JOIN renal_profiles rprof ON rprof.patient_id = p.id
|
67
|
+
LEFT JOIN ( SELECT DISTINCT ON (transplant_recipient_operations.patient_id) transplant_recipient_operations.patient_id,
|
68
|
+
transplant_recipient_operations.performed_on
|
69
|
+
FROM transplant_recipient_operations
|
70
|
+
ORDER BY transplant_recipient_operations.patient_id, transplant_recipient_operations.performed_on DESC) latest_op ON latest_op.patient_id = p.id;
|
@@ -0,0 +1,38 @@
|
|
1
|
+
select
|
2
|
+
P.id,
|
3
|
+
P.secure_id,
|
4
|
+
(upper(P.family_name) || ', ' || P.given_name) as "patient_name",
|
5
|
+
P.nhs_number,
|
6
|
+
P.local_patient_id as hospital_numbers,
|
7
|
+
P.sex,
|
8
|
+
P.born_on,
|
9
|
+
date_part('year', age(P.born_on)) as "age",
|
10
|
+
RPROF.esrf_on,
|
11
|
+
Mx.modality_name,
|
12
|
+
case when pw.id > 0 then true else false end as on_worryboard,
|
13
|
+
TXRSD."name" tx_status,
|
14
|
+
PA.values -> 'HGB' ->> 'result' as hgb,
|
15
|
+
(PA.values -> 'HGB' ->> 'observed_at')::date as hgb_date,
|
16
|
+
PA.values -> 'URE' ->> 'result' as ure,
|
17
|
+
(PA.values -> 'URE' ->> 'observed_at')::date as ure_date,
|
18
|
+
PA.values -> 'CRE' ->> 'result' as cre,
|
19
|
+
(PA.values -> 'CRE' ->> 'observed_at')::date as cre_date,
|
20
|
+
PA.values -> 'EGFR' ->> 'result' as egfr,
|
21
|
+
case when TXRSD.code not ilike '%permanent' then true else false end as tx_candidate,
|
22
|
+
case
|
23
|
+
when (convert_to_float(PA.values->'HGB'->>'result') < 100.0) then '< 100'
|
24
|
+
when (convert_to_float(PA.values->'HGB'->>'result') > 130.0) then '> 130'
|
25
|
+
else NULL
|
26
|
+
end as hgb_range,
|
27
|
+
case
|
28
|
+
when (convert_to_float(values->'URE'->>'result') >= 30.0) then '>= 30'
|
29
|
+
else NULL
|
30
|
+
end as urea_range
|
31
|
+
from renalware.patients P
|
32
|
+
left join patient_worries pw on pw.patient_id = p.id
|
33
|
+
left outer join renalware.pathology_current_observation_sets PA on PA.patient_id = P.id
|
34
|
+
left outer join renalware.renal_profiles RPROF on RPROF.patient_id = P.id
|
35
|
+
left outer join renalware.transplant_registrations TXR on TXR.patient_id = P.id
|
36
|
+
left outer join renalware.transplant_registration_statuses TXRS on TXRS.registration_id = TXR.id AND TXRS.terminated_on IS null and TXRS.started_on <= current_date
|
37
|
+
left outer join renalware.transplant_registration_status_descriptions TXRSD on TXRSD.id = TXRS.description_id
|
38
|
+
inner join renalware.patient_current_modalities Mx on Mx.patient_id = P.id and Mx.modality_code = 'low_clearance'
|
@@ -0,0 +1,39 @@
|
|
1
|
+
select
|
2
|
+
P.id,
|
3
|
+
P.secure_id,
|
4
|
+
(upper(P.family_name) || ', ' || P.given_name) as "patient_name",
|
5
|
+
P.nhs_number,
|
6
|
+
P.local_patient_id as hospital_numbers,
|
7
|
+
P.sex,
|
8
|
+
P.born_on,
|
9
|
+
date_part('year', age(P.born_on)) as "age",
|
10
|
+
RPROF.esrf_on,
|
11
|
+
Mx.modality_name,
|
12
|
+
case when pw.id > 0 then true else false end as on_worryboard,
|
13
|
+
(select bmi from clinic_visits where patient_id = P.id and bmi > 0 order by date desc limit 1) as bmi,
|
14
|
+
TXRSD."name" tx_status,
|
15
|
+
PA.values -> 'HGB' ->> 'result' as hgb,
|
16
|
+
(PA.values -> 'HGB' ->> 'observed_at')::date as hgb_date,
|
17
|
+
PA.values -> 'URE' ->> 'result' as ure,
|
18
|
+
(PA.values -> 'URE' ->> 'observed_at')::date as ure_date,
|
19
|
+
PA.values -> 'CRE' ->> 'result' as cre,
|
20
|
+
(PA.values -> 'CRE' ->> 'observed_at')::date as cre_date,
|
21
|
+
PA.values -> 'EGFR' ->> 'result' as egfr,
|
22
|
+
case when TXRSD.code not ilike '%permanent' then true else false end as tx_candidate,
|
23
|
+
case
|
24
|
+
when (convert_to_float(PA.values->'HGB'->>'result') < 100.0) then '< 100'
|
25
|
+
when (convert_to_float(PA.values->'HGB'->>'result') > 130.0) then '> 130'
|
26
|
+
else NULL
|
27
|
+
end as hgb_range,
|
28
|
+
case
|
29
|
+
when (convert_to_float(values->'URE'->>'result') >= 30.0) then '>= 30'
|
30
|
+
else NULL
|
31
|
+
end as urea_range
|
32
|
+
from renalware.patients P
|
33
|
+
left join patient_worries pw on pw.patient_id = p.id
|
34
|
+
left outer join renalware.pathology_current_observation_sets PA on PA.patient_id = P.id
|
35
|
+
left outer join renalware.renal_profiles RPROF on RPROF.patient_id = P.id
|
36
|
+
left outer join renalware.transplant_registrations TXR on TXR.patient_id = P.id
|
37
|
+
left outer join renalware.transplant_registration_statuses TXRS on TXRS.registration_id = TXR.id AND TXRS.terminated_on IS null and TXRS.started_on <= current_date
|
38
|
+
left outer join renalware.transplant_registration_status_descriptions TXRSD on TXRSD.id = TXRS.description_id
|
39
|
+
inner join renalware.patient_current_modalities Mx on Mx.patient_id = P.id and Mx.modality_code = 'low_clearance'
|