renalware-core 2.0.148 → 2.0.155
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- checksums.yaml +4 -4
- data/README.md +23 -2
- data/app/assets/config/renalware/core/manifest.js +1 -0
- data/app/assets/images/renalware/icons/align-justify.svg +3 -0
- data/app/assets/images/renalware/icons/bar-chart.svg +1 -0
- data/app/assets/images/renalware/icons/chart-bar.svg +1 -0
- data/app/assets/images/renalware/icons/chart.svg +3 -0
- data/app/assets/images/renalware/icons/list-bullet.svg +1 -0
- data/app/assets/images/renalware/icons/list.svg +8 -0
- data/app/assets/javascripts/renalware/README.md +25 -1
- data/app/assets/javascripts/renalware/components/dialogs.js.erb +3 -1
- data/app/assets/javascripts/renalware/components/hd.js +2 -2
- data/app/assets/javascripts/renalware/components/letters.js +1 -1
- data/app/assets/javascripts/renalware/components/masonry.run.js +2 -2
- data/app/assets/javascripts/renalware/components/navigation.js +0 -7
- data/app/assets/javascripts/renalware/components/patient_menu.js +1 -1
- data/app/assets/javascripts/renalware/components/session_timeout_redirect.js.erb +26 -21
- data/app/assets/javascripts/renalware/components/sortable.js +3 -0
- data/app/assets/javascripts/renalware/components/toggler.js +1 -1
- data/app/assets/javascripts/renalware/core.js.erb +2 -2
- data/app/assets/javascripts/renalware/rollup_compiled.css +106315 -0
- data/app/assets/javascripts/renalware/rollup_compiled.js +3326 -16
- data/app/assets/stylesheets/renalware/base/_variables.scss +1 -0
- data/app/assets/stylesheets/renalware/core.scss +1 -0
- data/app/assets/stylesheets/renalware/lib/_foundation_and_overrides.scss +1 -620
- data/app/assets/stylesheets/renalware/lib/_select2-foundation5-overrides.scss +1 -1
- data/app/assets/stylesheets/renalware/modules/_hd.scss +8 -4
- data/app/assets/stylesheets/renalware/modules/_medications.scss +9 -9
- data/app/assets/stylesheets/renalware/modules/_pathology.scss +8 -1
- data/app/assets/stylesheets/renalware/modules/_patients.scss +4 -0
- data/app/assets/stylesheets/renalware/modules/_pd.scss +35 -0
- data/app/assets/stylesheets/renalware/modules/_users.scss +2 -1
- data/app/assets/stylesheets/renalware/partials/_charting.scss +17 -0
- data/app/assets/stylesheets/renalware/partials/_forms.scss +16 -1
- data/app/assets/stylesheets/renalware/partials/_navigation.scss +15 -12
- data/app/assets/stylesheets/renalware/partials/_simple_form.scss +11 -3
- data/app/assets/stylesheets/renalware/partials/_tables.scss +15 -8
- data/app/assets/stylesheets/renalware/partials/_toggle.scss +0 -66
- data/app/assets/stylesheets/renalware/partials/_toggling.scss +18 -0
- data/app/assets/stylesheets/renalware/partials/_trix.scss +12 -0
- data/app/assets/stylesheets/renalware/partials/_utilities.scss +12 -0
- data/app/assets/stylesheets/tailwind/tailwind.css +3 -0
- data/app/components/renalware/admissions/active_consult_alert_component.html.slim +4 -0
- data/app/components/renalware/admissions/active_consult_alert_component.rb +25 -0
- data/app/components/renalware/application_component.rb +2 -1
- data/app/components/renalware/article_component.html.slim +5 -0
- data/app/components/renalware/article_component.rb +12 -0
- data/app/components/renalware/events/{biopsies_component.html.slim → event_list_component.html.slim} +5 -4
- data/app/components/renalware/events/event_list_component.rb +82 -0
- data/app/components/renalware/hd/administer_prescription_dropdown_component.html.slim +1 -1
- data/app/components/renalware/hd/administer_prescription_dropdown_component.rb +1 -5
- data/app/components/renalware/hd/prescription_last_administration_component.html.slim +0 -1
- data/app/components/renalware/hd/prescription_last_administration_component.rb +8 -7
- data/app/components/renalware/letters/unread_electronic_ccs_component.rb +1 -0
- data/app/components/renalware/medications/tabbed_prescriptions_list_component.html.slim +41 -0
- data/app/components/renalware/medications/tabbed_prescriptions_list_component.rb +47 -0
- data/app/components/renalware/pathology/chart_component.html.slim +5 -0
- data/app/components/renalware/pathology/chart_component.rb +40 -0
- data/app/components/renalware/pathology/sparkline_component.html.slim +15 -0
- data/app/components/renalware/pathology/sparkline_component.rb +135 -0
- data/app/components/renalware/patients/messages_component.html.slim +45 -0
- data/app/components/renalware/patients/messages_component.rb +52 -0
- data/app/components/renalware/patients/side_menu_component.rb +2 -11
- data/app/components/renalware/pd/adequacy_results_component.html.slim +7 -0
- data/app/components/renalware/pd/adequacy_results_component.rb +39 -0
- data/app/components/renalware/pd/pet_results_component.html.slim +37 -0
- data/app/components/renalware/pd/pet_results_component.rb +84 -0
- data/app/{views/renalware/surveys/_eq5d_summary_part.html.slim → components/renalware/surveys/eq5d_component.html.slim} +5 -5
- data/app/{models/renalware/surveys/eq5d_summary_part.rb → components/renalware/surveys/eq5d_component.rb} +7 -5
- data/app/{views/renalware/surveys/_pos_s_summary_part.html.slim → components/renalware/surveys/pos_s_component.html.slim} +6 -9
- data/app/{models/renalware/surveys/pos_s_summary_part.rb → components/renalware/surveys/pos_s_component.rb} +9 -5
- data/app/components/renalware/system/admin_menu_component.html.slim +3 -1
- data/app/components/renalware/system/admin_menu_component.rb +2 -2
- data/app/components/renalware/system/article_component.html.slim +3 -0
- data/app/components/renalware/system/article_component.rb +9 -0
- data/app/components/renalware/users/last_signin_component.html.slim +3 -0
- data/app/components/renalware/users/last_signin_component.rb +23 -0
- data/app/controllers/renalware/admin/playgrounds_controller.rb +1 -1
- data/app/controllers/renalware/admin/users_controller.rb +1 -0
- data/app/controllers/renalware/admissions/consults_controller.rb +1 -1
- data/app/controllers/renalware/base_controller.rb +3 -3
- data/app/controllers/renalware/concerns/pdf_renderable.rb +1 -1
- data/app/controllers/renalware/drugs/drugs_controller.rb +4 -0
- data/app/controllers/renalware/hd/historical_profiles_controller.rb +1 -1
- data/app/controllers/renalware/hd/scheduling/diaries_controller.rb +1 -1
- data/app/controllers/renalware/medications/prescriptions_controller.rb +6 -3
- data/app/controllers/renalware/messaging/internal/messages_controller.rb +14 -5
- data/app/controllers/renalware/pathology/charts_controller.rb +21 -0
- data/app/controllers/renalware/pathology/current_observation_results_controller.rb +1 -1
- data/app/controllers/renalware/pathology/historical_observation_results_controller.rb +1 -1
- data/app/controllers/renalware/pathology/nearest_observation_results_controller.rb +52 -0
- data/app/controllers/renalware/pathology/observation_descriptions_controller.rb +58 -0
- data/app/controllers/renalware/pathology/observation_requests_controller.rb +1 -1
- data/app/controllers/renalware/pathology/observations_controller.rb +26 -2
- data/app/controllers/renalware/pathology/requests/requests_controller.rb +7 -5
- data/app/controllers/renalware/patients/mdms_controller.rb +104 -0
- data/app/controllers/renalware/pd/adequacy_completions_controller.rb +18 -0
- data/app/controllers/renalware/pd/adequacy_results_controller.rb +98 -0
- data/app/controllers/renalware/pd/pet_completions_controller.rb +18 -0
- data/app/controllers/renalware/pd/pet_results_controller.rb +122 -0
- data/app/controllers/renalware/pd/unified_pet_adequacies_controller.rb +102 -0
- data/app/controllers/renalware/renal/aki_alerts_controller.rb +1 -1
- data/app/controllers/renalware/renal/registry_preflight_checks_controller.rb +55 -19
- data/app/controllers/renalware/session_timeout_controller.rb +20 -17
- data/app/controllers/renalware/system/view_metadata_controller.rb +61 -0
- data/app/controllers/renalware/users_controller.rb +25 -0
- data/app/documents/renalware/age.rb +3 -1
- data/app/helpers/renalware/application_helper.rb +9 -8
- data/app/helpers/renalware/article_helper.rb +3 -3
- data/app/helpers/renalware/boolean_helper.rb +15 -0
- data/app/helpers/renalware/clipboard_helper.rb +2 -3
- data/app/helpers/renalware/dashboards_helper.rb +2 -2
- data/app/helpers/renalware/definition_list_helper.rb +3 -3
- data/app/helpers/renalware/devise_helper.rb +1 -1
- data/app/helpers/renalware/drugs_helper.rb +6 -0
- data/app/helpers/renalware/form_helper.rb +2 -2
- data/app/helpers/renalware/layout_helper.rb +1 -1
- data/app/helpers/renalware/letters_helper.rb +1 -1
- data/app/helpers/renalware/link_helper.rb +1 -1
- data/app/helpers/renalware/mdm_helper.rb +1 -0
- data/app/helpers/renalware/navigation_helper.rb +1 -1
- data/app/helpers/renalware/patient_helper.rb +2 -2
- data/app/helpers/renalware/snippets_helper.rb +9 -10
- data/app/helpers/renalware/toggle_helper.rb +6 -6
- data/app/helpers/renalware/tooltip_helper.rb +14 -16
- data/app/inputs/clock_picker_input.rb +3 -3
- data/app/inputs/date_picker_input.rb +3 -3
- data/app/inputs/simple_time_input.rb +3 -3
- data/app/inputs/trix_editor_input.rb +2 -0
- data/app/javascript/renalware/controllers/blas_controller.js +37 -0
- data/app/javascript/renalware/controllers/modal_controller.js +137 -0
- data/app/javascript/renalware/controllers/pathology/sparklines_controller.js +206 -0
- data/app/javascript/renalware/controllers/pd/pet_charts_controller.js +169 -0
- data/app/javascript/renalware/controllers/session_controller.js +223 -0
- data/app/javascript/renalware/controllers/simple_toggle_controller.js +17 -0
- data/app/javascript/renalware/controllers/tabs_controller.js +43 -0
- data/app/javascript/renalware/controllers/toggle_controller.js +2 -2
- data/app/javascript/renalware/index.js +12 -0
- data/app/models/concerns/renalware/patients_ransack_helper.rb +2 -0
- data/app/models/concerns/renalware/sortable.rb +49 -0
- data/app/models/renalware/accesses/assessment.rb +5 -1
- data/app/models/renalware/accesses/patient.rb +2 -2
- data/app/models/renalware/accesses/plan.rb +1 -1
- data/app/models/renalware/accesses/procedure.rb +4 -1
- data/app/models/renalware/accesses/profile.rb +4 -1
- data/app/models/renalware/admissions/request.rb +1 -0
- data/app/models/renalware/clinical/body_composition.rb +5 -2
- data/app/models/renalware/clinical/dry_weight.rb +5 -2
- data/app/models/renalware/clinics/body_surface_area.rb +40 -0
- data/app/models/renalware/clinics/clinic_visit.rb +30 -5
- data/app/models/renalware/clinics/total_body_water.rb +63 -0
- data/app/models/renalware/events/advanced_care_plan.rb +24 -0
- data/app/models/renalware/events/clinical_frailty_score.rb +24 -0
- data/app/models/renalware/feeds/files/create_feed_file.rb +1 -1
- data/app/models/renalware/feeds/hl7_message.rb +1 -0
- data/app/models/renalware/hd/patient.rb +1 -1
- data/app/models/renalware/hd/preference_set.rb +5 -2
- data/app/models/renalware/hd/prescription_last_administration_query.rb +4 -0
- data/app/models/renalware/hd/profile.rb +9 -6
- data/app/models/renalware/hd/schedule_definition.rb +1 -1
- data/app/models/renalware/hd/session.rb +6 -3
- data/app/models/renalware/hd/session_forms/batch_compile_pdfs.rb +1 -1
- data/app/models/renalware/hd/session_forms/pdf_renderer.rb +1 -1
- data/app/models/renalware/hd/sessions/auditable_session_collection.rb +4 -1
- data/app/models/renalware/hd/station.rb +2 -1
- data/app/models/renalware/letters/description.rb +2 -0
- data/app/models/renalware/letters/html_renderer.rb +1 -1
- data/app/models/renalware/letters/letter.rb +1 -1
- data/app/models/renalware/letters/part/prescriptions.rb +12 -3
- data/app/models/renalware/letters/pdf_letter_cache.rb +1 -1
- data/app/models/renalware/letters/printing/batch_compile_pdfs.rb +1 -1
- data/app/models/renalware/letters/printing/duplex_interleaved_pdf_renderer.rb +1 -1
- data/app/models/renalware/letters/recipient_address_pdf_renderer.rb +1 -1
- data/app/models/renalware/letters/recipient_params_processor.rb +1 -1
- data/app/models/renalware/low_clearance/profile.rb +5 -2
- data/app/models/renalware/medications/prescription.rb +4 -6
- data/app/models/renalware/messaging/internal/message_form.rb +1 -0
- data/app/models/renalware/messaging/internal/message_form_builder.rb +2 -1
- data/app/models/renalware/pathology/code_group.rb +3 -1
- data/app/models/renalware/pathology/code_group_membership.rb +4 -1
- data/app/models/renalware/pathology/current_observations_for_descriptions_query.rb +3 -3
- data/app/models/renalware/pathology/measurement_unit.rb +13 -0
- data/app/models/renalware/pathology/nearest_observations_query.rb +44 -0
- data/app/models/renalware/pathology/observation_description.rb +23 -5
- data/app/models/renalware/pathology/observation_descriptions_by_code_query.rb +1 -1
- data/app/models/renalware/pathology/observation_requests_attributes_builder.rb +45 -5
- data/app/models/renalware/pathology/observations_jsonb_serializer.rb +1 -1
- data/app/models/renalware/pathology/observations_within_date_range_query.rb +1 -1
- data/app/models/renalware/patient.rb +22 -4
- data/app/models/renalware/patients/alert.rb +1 -0
- data/app/models/renalware/patients/bookmark.rb +2 -2
- data/app/models/renalware/patients/ingestion/update_master_patient_index.rb +1 -0
- data/app/models/renalware/patients/mdm_menu.rb +41 -0
- data/app/models/renalware/patients/mdm_patients_query.rb +1 -1
- data/app/models/renalware/patients/patient_hospital_identifiers.rb +1 -0
- data/app/models/renalware/patients/search_query.rb +1 -1
- data/app/models/renalware/patients/worry.rb +5 -2
- data/app/models/renalware/pd.rb +2 -0
- data/app/models/renalware/pd/adequacy_calculated_attributes.rb +159 -0
- data/app/models/renalware/pd/adequacy_result.rb +76 -0
- data/app/models/renalware/pd/apd/glucose_calculator.rb +1 -0
- data/app/models/renalware/pd/mdm_patients_query.rb +1 -1
- data/app/models/renalware/pd/patient.rb +4 -0
- data/app/models/renalware/pd/pet_dextrose_concentration.rb +17 -0
- data/app/models/renalware/pd/pet_result.rb +92 -0
- data/app/models/renalware/pd/unified_pet_adequacy_form.rb +46 -0
- data/app/models/renalware/problems/problem.rb +7 -2
- data/app/models/renalware/renal/aki_alert.rb +4 -1
- data/app/models/renalware/renal/profile.rb +4 -1
- data/app/models/renalware/renal/registry/preflight_checks/missing_esrf_query.rb +50 -0
- data/app/models/renalware/snippets/duplicate_snippet_title_generator.rb +1 -0
- data/app/models/renalware/snippets/snippet_query.rb +1 -1
- data/app/models/renalware/surveys/question.rb +1 -2
- data/app/models/renalware/system/column_definition.rb +43 -0
- data/app/models/renalware/system/filter_definition.rb +29 -0
- data/app/models/renalware/system/update_user.rb +5 -0
- data/app/models/renalware/system/version.rb +11 -0
- data/app/models/renalware/system/view_metadata.rb +25 -0
- data/app/models/renalware/transplants/donation.rb +5 -3
- data/app/models/renalware/transplants/donor_followup.rb +4 -3
- data/app/models/renalware/transplants/donor_operation.rb +4 -2
- data/app/models/renalware/transplants/donor_workup.rb +4 -2
- data/app/models/renalware/transplants/failure_cause_description.rb +1 -1
- data/app/models/renalware/transplants/mdm_patients_query.rb +2 -2
- data/app/models/renalware/transplants/patient.rb +1 -1
- data/app/models/renalware/transplants/recipient_followup.rb +6 -5
- data/app/models/renalware/transplants/recipient_operation.rb +5 -2
- data/app/models/renalware/transplants/recipient_workup.rb +5 -2
- data/app/models/renalware/transplants/recipient_workup_builder.rb +1 -0
- data/app/models/renalware/transplants/registration.rb +6 -5
- data/app/models/renalware/transplants/registration_status.rb +1 -1
- data/app/models/renalware/transplants/registrations/wait_list_query.rb +4 -4
- data/app/models/renalware/transplants/rejection_episode.rb +1 -1
- data/app/models/renalware/ukrdc/{batch_number.rb → batch.rb} +1 -1
- data/app/models/renalware/ukrdc/create_encrypted_patient_xml_files.rb +7 -10
- data/app/models/renalware/ukrdc/create_patient_xml_file.rb +3 -4
- data/app/models/renalware/ukrdc/housekeeping/remove_old_export_archive_folders.rb +3 -3
- data/app/models/renalware/ukrdc/housekeeping/remove_stale_files.rb +2 -2
- data/app/models/renalware/ukrdc/incoming/import_surveys.rb +1 -2
- data/app/models/renalware/ukrdc/measurement_unit.rb +21 -0
- data/app/models/renalware/ukrdc/outgoing/rendering/lab_order.rb +30 -2
- data/app/models/renalware/ukrdc/outgoing/rendering/patient_number.rb +1 -1
- data/app/models/renalware/ukrdc/paths.rb +1 -1
- data/app/models/renalware/ukrdc/transmission_log.rb +3 -2
- data/app/models/renalware/ukrdc/treatment_timeline/prepare_tables.rb +1 -1
- data/app/models/renalware/ukrdc/treatment_timeline/remap_model_table_names_to_their_prepared_equivalents.rb +1 -1
- data/app/models/renalware/user.rb +10 -0
- data/app/pdfs/renalware/events/event_pdf.rb +1 -0
- data/app/policies/application_policy.rb +1 -1
- data/app/policies/renalware/events/advanced_care_plan_policy.rb +10 -0
- data/app/policies/renalware/events/clinical_frailty_score_policy.rb +10 -0
- data/app/policies/renalware/medications/prescription_policy.rb +35 -0
- data/app/policies/renalware/pd/adequacy_result_policy.rb +15 -0
- data/app/policies/renalware/pd/pet_result_policy.rb +15 -0
- data/app/policies/renalware/renal/registry_preflight_check_policy.rb +4 -0
- data/app/policies/renalware/system/view_metadata_policy.rb +17 -0
- data/app/presenters/concerns/renalware/accountable_presentation.rb +33 -0
- data/app/presenters/renalware/clinical/profile_presenter.rb +1 -0
- data/app/presenters/renalware/clinics/visit_presenter.rb +11 -0
- data/app/presenters/renalware/events/event_presenter.rb +11 -0
- data/app/presenters/renalware/hd/dashboard_presenter.rb +1 -0
- data/app/presenters/renalware/hd/profile_presenter.rb +1 -0
- data/app/presenters/renalware/hd/scheduling/diary_presenter.rb +1 -0
- data/app/presenters/renalware/hd/session_presenter.rb +1 -0
- data/app/presenters/renalware/hd/unmet_preferences_presenter.rb +1 -1
- data/app/presenters/renalware/mdm_patients_presenter.rb +1 -0
- data/app/presenters/renalware/mdm_presenter.rb +11 -0
- data/app/presenters/renalware/pathology/results_presenter.rb +1 -2
- data/app/presenters/renalware/pd/dashboard_presenter.rb +10 -2
- data/app/presenters/renalware/renal/clinical_summary_presenter.rb +9 -6
- data/app/presenters/renalware/ukrdc/patient_presenter.rb +1 -0
- data/app/presenters/renalware/user_session_presenter.rb +44 -0
- data/app/validators/renalware/patients/nhs_number_validator.rb +88 -0
- data/app/values/renalware/address.rb +1 -0
- data/app/views/renalware/accesses/assessments/show.html.slim +1 -1
- data/app/views/renalware/accesses/procedures/show.html.slim +1 -1
- data/app/views/renalware/accesses/profiles/show.html.slim +1 -1
- data/app/views/renalware/admin/cache/show.html.slim +36 -0
- data/app/views/renalware/admin/playgrounds/show.html.slim +5 -6
- data/app/views/renalware/admin/users/edit.html.slim +9 -0
- data/app/views/renalware/admin/users/index.html.slim +6 -0
- data/app/views/renalware/admissions/admissions/_filters.html.slim +8 -16
- data/app/views/renalware/admissions/consults/_form.html.slim +19 -18
- data/app/views/renalware/clinical/allergies/_list.html.slim +3 -1
- data/app/views/renalware/clinical/profiles/show.html.slim +11 -1
- data/app/views/renalware/clinics/clinic_visits/_table.html.slim +2 -0
- data/app/views/renalware/clinics/clinic_visits/_table_row.html.slim +2 -0
- data/app/views/renalware/dashboard/dashboards/show.html.slim +1 -0
- data/app/views/renalware/dashboard/letters/_letter.html.slim +1 -1
- data/app/views/renalware/directory/people/show.html.slim +1 -1
- data/app/views/renalware/events/advanced_care_plans/_cell.html.slim +2 -0
- data/app/views/renalware/events/advanced_care_plans/_inputs.html.slim +4 -0
- data/app/views/renalware/events/advanced_care_plans/_toggled_cell.html.slim +8 -0
- data/app/views/renalware/events/clinical_frailty_score/_cell.html.slim +2 -0
- data/app/views/renalware/events/clinical_frailty_score/_inputs.html.slim +4 -0
- data/app/views/renalware/events/clinical_frailty_score/_toggled_cell.html.slim +8 -0
- data/app/views/renalware/events/events/_table.html.slim +1 -1
- data/app/views/renalware/hd/current_profile/_show.html.slim +1 -1
- data/app/views/renalware/hd/current_profile/show.html.slim +1 -1
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- data/app/views/renalware/hd/prescription_administrations/new.js.erb +1 -1
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- data/app/views/renalware/letters/contacts/_contact.html.slim +1 -1
- data/app/views/renalware/letters/electronic_receipts/_table.html.slim +1 -1
- data/app/views/renalware/letters/letters/_form.html.slim +1 -1
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- data/app/views/renalware/mdm/_prescriptions.html.slim +4 -13
- data/app/views/renalware/mdm/prescriptions/_table.html.slim +3 -1
- data/app/views/renalware/mdm/show.html.slim +1 -1
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- data/app/views/renalware/medications/prescriptions/_options.html.slim +3 -3
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- data/app/views/renalware/medications/prescriptions/_tables.html.slim +13 -16
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- data/app/views/renalware/navigation/{_super_admin.html.slim → _super_admin.html.slim.dead} +0 -0
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- data/app/views/renalware/pd/unified_pet_adequacies/new.html.slim +2 -0
- data/app/views/renalware/renal/profiles/show.html.slim +1 -1
- data/app/views/renalware/renal/registry_preflight_checks/_filters.html.slim +5 -3
- data/app/views/renalware/renal/registry_preflight_checks/_navigation.html.slim +1 -0
- data/app/views/renalware/renal/registry_preflight_checks/deaths.html.slim +2 -1
- data/app/views/renalware/renal/registry_preflight_checks/missing_esrf.html.slim +12 -0
- data/app/views/renalware/renal/registry_preflight_checks/patients.html.slim +1 -2
- data/app/views/renalware/shared/_fieldset.html.slim +1 -2
- data/app/views/renalware/shared/_magellan_block.html.slim +1 -2
- data/app/views/renalware/surveys/dashboards/show.html.slim +2 -2
- data/app/views/renalware/system/view_metadata/_columns_table.html.slim +44 -0
- data/app/views/renalware/system/view_metadata/_filters_form.html.slim +19 -0
- data/app/views/renalware/system/view_metadata/_versions.html.slim +23 -0
- data/app/views/renalware/system/view_metadata/edit.html.slim +66 -0
- data/app/views/renalware/transplants/donor_workups/show.html.slim +1 -1
- data/app/views/renalware/transplants/mdm/_bottom.html.slim +3 -1
- data/app/views/renalware/transplants/mdm/_prescriptions.html.slim +6 -22
- data/app/views/renalware/transplants/recipient_followups/show.html.slim +1 -1
- data/app/views/renalware/transplants/recipient_operations/show.html.slim +1 -1
- data/app/views/renalware/transplants/recipient_workups/show.html.slim +1 -1
- data/app/views/renalware/transplants/registrations/show.html.slim +1 -1
- data/app/views/renalware/transplants/wait_lists/show.html.slim +1 -1
- data/app/views/renalware/users/_filters.html.slim +11 -0
- data/app/views/renalware/users/index.html.slim +24 -0
- data/config/initializers/core_extensions.rb +2 -2
- data/config/initializers/delayed_job.rb +1 -1
- data/config/initializers/inflections.rb +9 -0
- data/config/initializers/pagy.rb +5 -0
- data/config/initializers/paper_trail.rb +1 -1
- data/config/initializers/simple_form_wrappers.rb +14 -9
- data/config/initializers/wicked_pdf.rb +12 -0
- data/config/locales/en-GB.yml +1 -1
- data/config/locales/renalware/clinical/allergies.en.yml +1 -0
- data/config/locales/renalware/events/advanced_care_plan.en.yml +12 -0
- data/config/locales/renalware/events/biopsy.en.yml +2 -0
- data/config/locales/renalware/events/clinical_frailty_score.en.yml +16 -0
- data/config/locales/renalware/events/clinical_frailty_score_component.en.yml +8 -0
- data/config/locales/renalware/medications/tabbed_prescriptions_list_component.yml +15 -0
- data/config/locales/renalware/navigation/renal.en.yml +1 -0
- data/config/locales/renalware/nhs_number.en.yml +6 -0
- data/config/locales/renalware/patients/side_menu.en.yml +1 -0
- data/config/locales/renalware/pd/adequacy_result.en.yml +9 -0
- data/config/locales/renalware/pd/dashboard.en.yml +3 -0
- data/config/locales/renalware/pd/pet_result.en.yml +23 -0
- data/config/locales/renalware/renal/registry.en.yml +1 -0
- data/config/permissions.yml +1 -0
- data/config/routes.rb +1 -0
- data/config/routes/messaging.rb +9 -1
- data/config/routes/pathology.rb +7 -0
- data/config/routes/patients.rb +1 -0
- data/config/routes/pd.rb +5 -0
- data/config/routes/renal.rb +1 -0
- data/config/routes/system.rb +5 -1
- data/config/routes/users.rb +3 -0
- data/db/functions/convert_to_float_with_explicit_return_v01.sql +18 -0
- data/db/functions/generate_secure_id_v01.sql +1 -1
- data/db/functions/update_current_observation_set_from_trigger_v05.sql +92 -0
- data/db/functions/update_pathology_observations_nresult_from_trigger_v01.sql +13 -0
- data/db/migrate/20200122182018_update_patient_current_modalities.rb +7 -0
- data/db/migrate/20200122182036_create_transplant_mdm_patients.rb +7 -0
- data/db/migrate/20200122190909_create_view_metadata.rb +44 -0
- data/db/migrate/20200131133223_create_hd_mdm_patients.rb +7 -0
- data/db/migrate/20200205185151_add_columns_to_system_view_metadata.rb +13 -0
- data/db/migrate/20200219113324_create_supportive_care_mdm_patients_view.rb +7 -0
- data/db/migrate/20200226145010_add_unique_indexes.rb +47 -0
- data/db/migrate/20200408131217_associate_batch_with_ukrdc_transmission_log.rb +15 -0
- data/db/migrate/20200421082715_add_body_surface_area_to_clinic_visits.rb +8 -0
- data/db/migrate/20200421132911_create_pd_pet_dextrose_concentrations.rb +13 -0
- data/db/migrate/20200421143546_create_pet_results.rb +66 -0
- data/db/migrate/20200427123229_create_adequacy_results.rb +54 -0
- data/db/migrate/20200616115709_add_height_weight_to_pd_adequacy_results.rb +8 -0
- data/db/migrate/20200618144228_add_feature_flags_to_users.rb +14 -0
- data/db/migrate/20200622120232_add_limits_to_path_obs_descriptions.rb +18 -0
- data/db/migrate/20200626081248_overload_convert_to_float_function.rb +13 -0
- data/db/migrate/20200626090256_add_nresult_to_pathology_observations.rb +29 -0
- data/db/migrate/20200628094228_add_prescriber_to_users.rb +14 -0
- data/db/migrate/20200812074223_add_public_flag_to_messages.rb +18 -0
- data/db/migrate/20200815150303_create_system_versions.rb +16 -0
- data/db/migrate/20200817085618_create_pd_mdm_patients.rb +7 -0
- data/db/migrate/20200817103930_create_low_clearance_mdm_patients.rb +7 -0
- data/db/migrate/20201001144512_update_fn_update_current_obs_set_triggerv05.rb +13 -0
- data/db/migrate/20201001145452_add_position_to_letter_descriptions.rb +5 -0
- data/db/migrate/20201009090959_make_drug_types_unique.rb +8 -0
- data/db/migrate/20201012160414_add_suggested_measurement_unit_to_pathology_observation_descriptions.rb +18 -0
- data/db/migrate/20201012171428_create_ukrdc_measurement_units.rb +18 -0
- data/db/migrate/20201015160542_add_position_to_drug_types.rb +31 -0
- data/db/migrate/20201020155510_add_bmi_to_clinic_visits.rb +28 -0
- data/db/migrate/20201020164524_update_pd_mdm_patients_view.rb +7 -0
- data/db/migrate/20201020170921_update_hd_mdm_patients_view.rb +7 -0
- data/db/migrate/20201020171139_update_low_clearance_mdm_patients_view.rb +7 -0
- data/db/migrate/20201021153832_update_supportive_care_mdm_patients_view.rb +7 -0
- data/db/migrate/20201021154809_update_transplant_mdm_patients_view.rb +7 -0
- data/db/migrate/20201023092859_remove_unused_indexes.rb +20 -0
- data/db/seeds/default/events/event_types.csv +2 -0
- data/db/seeds/default/system/seeds.rb +1 -0
- data/db/seeds/default/system/view_metadata.rb +91 -0
- data/db/seeds/default/ukrdc/measurement_units.csv +12 -0
- data/db/seeds/default/ukrdc/measurement_units.rb +15 -0
- data/db/seeds/default/ukrdc/seeds.rb +1 -0
- data/db/seeds/seeds_helper.rb +8 -2
- data/db/triggers/update_pathology_observations_nresult_trigger_v01.sql +11 -0
- data/db/views/hd_mdm_patients_v01.sql +69 -0
- data/db/views/hd_mdm_patients_v02.sql +70 -0
- data/db/views/low_clearance_mdm_patients_v01.sql +38 -0
- data/db/views/low_clearance_mdm_patients_v02.sql +39 -0
- data/db/views/patient_current_modalities_v02.sql +18 -0
- data/db/views/pd_mdm_patients_v01.sql +42 -0
- data/db/views/pd_mdm_patients_v02.sql +43 -0
- data/db/views/supportive_care_mdm_patients_v01.sql +28 -0
- data/db/views/supportive_care_mdm_patients_v02.sql +29 -0
- data/db/views/transplant_mdm_patients_v01.sql +46 -0
- data/db/views/transplant_mdm_patients_v02.sql +47 -0
- data/lib/renalware/configuration.rb +8 -0
- data/lib/renalware/engine.rb +8 -5
- data/lib/renalware/version_number.rb +10 -0
- data/lib/tasks/db.rake +9 -0
- data/lib/tasks/pd.rake +28 -0
- data/lib/tasks/renalware.rake +7 -1
- data/spec/factories/accesses/profiles.rb +1 -0
- data/spec/factories/drugs/drug_types.rb +5 -1
- data/spec/factories/events/events_types.rb +12 -0
- data/spec/factories/messaging/internal/messages.rb +1 -0
- data/spec/factories/patients/patients.rb +22 -1
- data/spec/factories/patients/practices.rb +1 -1
- data/spec/factories/patients/primary_care_physicians.rb +1 -1
- data/spec/factories/pd/adequacy_results.rb +16 -0
- data/spec/factories/pd/pet_results.rb +9 -0
- data/spec/factories/system/users.rb +1 -0
- data/spec/factories/system/view_metadata.rb +20 -0
- data/spec/support/capybara_helper.rb +2 -4
- data/spec/support/letters_spec_helper.rb +1 -1
- data/spec/support/matchers/validate_timeliness_of.rb +1 -1
- data/spec/support/pathology_spec_helper.rb +1 -2
- data/spec/support/policy_spec_helper.rb +12 -0
- data/spec/support/shared_examples/supersedable_examples.rb +2 -2
- data/vendor/assets/javascripts/foundation/foundation.alert.js +43 -0
- data/vendor/assets/javascripts/foundation/foundation.dropdown.js +468 -0
- data/vendor/assets/javascripts/foundation/foundation.js +727 -0
- data/vendor/assets/javascripts/foundation/foundation.reveal.js +522 -0
- data/vendor/assets/javascripts/foundation/foundation.tab.js +247 -0
- data/vendor/assets/javascripts/foundation/foundation.tooltip.js +348 -0
- data/vendor/assets/javascripts/foundation/foundation.topbar.js +458 -0
- data/vendor/assets/stylesheets/foundation/_functions.scss +156 -0
- data/vendor/assets/stylesheets/foundation/components/_alert-boxes.scss +128 -0
- data/vendor/assets/stylesheets/foundation/components/_buttons.scss +261 -0
- data/vendor/assets/stylesheets/foundation/components/_dropdown-buttons.scss +130 -0
- data/vendor/assets/stylesheets/foundation/components/_dropdown.scss +269 -0
- data/vendor/assets/stylesheets/foundation/components/_forms.scss +601 -0
- data/vendor/assets/stylesheets/foundation/components/_global.scss +566 -0
- data/vendor/assets/stylesheets/foundation/components/_grid.scss +292 -0
- data/vendor/assets/stylesheets/foundation/components/_labels.scss +106 -0
- data/vendor/assets/stylesheets/foundation/components/_pagination.scss +163 -0
- data/vendor/assets/stylesheets/foundation/components/_panels.scss +107 -0
- data/vendor/assets/stylesheets/foundation/components/_reveal.scss +212 -0
- data/vendor/assets/stylesheets/foundation/components/_side-nav.scss +120 -0
- data/vendor/assets/stylesheets/foundation/components/_split-buttons.scss +203 -0
- data/vendor/assets/stylesheets/foundation/components/_sub-nav.scss +125 -0
- data/vendor/assets/stylesheets/foundation/components/_tables.scss +135 -0
- data/vendor/assets/stylesheets/foundation/components/_tabs.scss +142 -0
- data/vendor/assets/stylesheets/foundation/components/_tooltips.scss +142 -0
- data/vendor/assets/stylesheets/foundation/components/_top-bar.scss +745 -0
- data/vendor/assets/stylesheets/foundation/components/_type.scss +525 -0
- data/vendor/assets/stylesheets/foundation/components/_visibility.scss +425 -0
- metadata +293 -90
- data/app/components/renalware/events/biopsies_component.rb +0 -20
- data/app/views/renalware/pd/infection_organisms/_edit.html.slim.obsolete +0 -16
- data/app/views/renalware/transplants/donor_operations/_sections_nav.html.slim +0 -11
- data/app/views/renalware/transplants/donor_workups/_sections_nav.html.slim +0 -15
- data/app/views/renalware/transplants/recipient_operations/_sections_nav.html.slim +0 -14
- data/app/views/renalware/transplants/recipient_workups/_sections_nav.html.slim +0 -15
- data/lib/core_extensions/active_record/sort.rb +0 -52
- data/lib/renalware/version.rb +0 -5
- data/spec/support/pages/accesses/procedure_page.rb +0 -53
- data/spec/support/pages/accesses/profile_page.rb +0 -45
- data/spec/support/pages/admissions/consults_page.rb +0 -26
- data/spec/support/pages/clinical/allergy_page.rb +0 -74
- data/spec/support/pages/clinical/profile_page.rb +0 -28
- data/spec/support/pages/hd/prescription_administration_dialog.rb +0 -132
- data/spec/support/pages/letters/form.rb +0 -63
- data/spec/support/pages/letters/mailshots/form.rb +0 -58
- data/spec/support/pages/letters/patient_letters.rb +0 -20
- data/spec/support/pages/low_clearance/profile_page.rb +0 -70
- data/spec/support/pages/medications/home_delivery_dialog.rb +0 -77
- data/spec/support/pages/medications/prescription_fom.rb +0 -62
- data/spec/support/pages/page_object.rb +0 -10
@@ -11,7 +11,7 @@ module Renalware
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has_many :prescription_administrations
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scope :with_profile, lambda {
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includes(hd_profile: :hospital_unit)
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.joins(<<-SQL)
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.joins(<<-SQL.squish)
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LEFT OUTER JOIN hd_profiles ON hd_profiles.patient_id = patients.id
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LEFT OUTER JOIN hospital_units ON hd_profiles.hospital_unit_id = hospital_units.id
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SQL
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@@ -10,9 +10,12 @@ module Renalware
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belongs_to :patient, touch: true
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belongs_to :hospital_unit, class_name: "Hospitals::Unit"
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belongs_to :schedule_definition
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belongs_to :schedule_definition
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has_paper_trail
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has_paper_trail(
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versions: { class_name: "Renalware::HD::Version" },
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on: [:create, :update, :destroy]
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)
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validates :patient, presence: true
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validates :entered_on, timeliness: { type: :date, allow_blank: true }
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@@ -8,6 +8,10 @@ module Renalware
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pattr_initialize [:prescription!]
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delegate :patient, to: :prescription
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def self.call(prescription:)
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new(prescription: prescription).call
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end
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def call
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raise ArgumentError if prescription.blank?
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raise ArgumentError if patient.blank?
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@@ -14,13 +14,16 @@ module Renalware
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belongs_to :patient, touch: true
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belongs_to :hospital_unit, class_name: "Hospitals::Unit"
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belongs_to :dialysate
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belongs_to :prescriber, class_name: "User"
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belongs_to :named_nurse, class_name: "User"
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belongs_to :transport_decider, class_name: "User"
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-
belongs_to :schedule_definition
|
21
|
-
|
17
|
+
belongs_to :prescriber, class_name: "User"
|
18
|
+
belongs_to :named_nurse, class_name: "User"
|
19
|
+
belongs_to :transport_decider, class_name: "User"
|
20
|
+
belongs_to :schedule_definition
|
22
21
|
has_document class_name: "Renalware::HD::ProfileDocument"
|
23
|
-
|
22
|
+
|
23
|
+
has_paper_trail(
|
24
|
+
versions: { class_name: "Renalware::HD::Version" },
|
25
|
+
on: [:create, :update, :destroy]
|
26
|
+
)
|
24
27
|
|
25
28
|
validates :patient, presence: true
|
26
29
|
validates :prescriber, presence: true
|
@@ -23,7 +23,7 @@ module Renalware
|
|
23
23
|
ABBREV_DAY_NAMES = %w(Mon Tue Wed Thu Fri Sat Sun).freeze
|
24
24
|
validates :days, presence: true
|
25
25
|
validates :diurnal_period_id, presence: true
|
26
|
-
belongs_to :diurnal_period, class_name: "DiurnalPeriodCode"
|
26
|
+
belongs_to :diurnal_period, class_name: "DiurnalPeriodCode"
|
27
27
|
scope :ordered, -> { order(days: :asc) }
|
28
28
|
|
29
29
|
# Render the schedule definition to a human friendly format e.g. "Mon, Wed, Fri AM"
|
@@ -24,15 +24,18 @@ module Renalware
|
|
24
24
|
belongs_to :modality_description, class_name: "Modalities::Description"
|
25
25
|
belongs_to :hospital_unit, class_name: "Hospitals::Unit"
|
26
26
|
belongs_to :dialysate
|
27
|
-
belongs_to :signed_on_by, class_name: "User"
|
28
|
-
belongs_to :signed_off_by, class_name: "User"
|
27
|
+
belongs_to :signed_on_by, class_name: "User"
|
28
|
+
belongs_to :signed_off_by, class_name: "User"
|
29
29
|
has_many :prescription_administrations,
|
30
30
|
class_name: "PrescriptionAdministration",
|
31
31
|
foreign_key: "hd_session_id",
|
32
32
|
dependent: :destroy
|
33
33
|
accepts_nested_attributes_for :prescription_administrations
|
34
34
|
|
35
|
-
has_paper_trail
|
35
|
+
has_paper_trail(
|
36
|
+
versions: { class_name: "Renalware::HD::Version" },
|
37
|
+
on: [:create, :update, :destroy]
|
38
|
+
)
|
36
39
|
|
37
40
|
before_create :assign_modality
|
38
41
|
before_save :compute_duration
|
@@ -23,7 +23,7 @@ module Renalware
|
|
23
23
|
def pdf_html
|
24
24
|
@pdf_html ||= begin
|
25
25
|
# Note we don't actually hit the ProtocolController#index action here.
|
26
|
-
controller.
|
26
|
+
controller.render_to_string_with_wicked_pdf(
|
27
27
|
template: "renalware/hd/protocols/index",
|
28
28
|
layout: "renalware/layouts/pdf",
|
29
29
|
locals: {
|
@@ -146,7 +146,10 @@ module Renalware
|
|
146
146
|
# Any values like "## TEST CANCELLED" etc are thus excluded from the calculation
|
147
147
|
def values
|
148
148
|
@values ||= begin
|
149
|
-
sessions
|
149
|
+
sessions
|
150
|
+
.map { |session| selector.call(session) }
|
151
|
+
.compact
|
152
|
+
.select { |val| number?(val) }
|
150
153
|
end
|
151
154
|
end
|
152
155
|
|
@@ -6,7 +6,8 @@ module Renalware
|
|
6
6
|
module HD
|
7
7
|
class Station < ApplicationRecord
|
8
8
|
include Accountable
|
9
|
-
|
9
|
+
include Sortable
|
10
|
+
belongs_to :location, class_name: "HD::StationLocation"
|
10
11
|
validates :hospital_unit_id, presence: true
|
11
12
|
validates :name, uniqueness: { scope: :hospital_unit_id }
|
12
13
|
|
@@ -8,7 +8,7 @@ module Renalware
|
|
8
8
|
class HTMLRenderer
|
9
9
|
def call(letter)
|
10
10
|
context = LettersController.new
|
11
|
-
context.
|
11
|
+
context.render_to_string_with_wicked_pdf(
|
12
12
|
partial: "/renalware/letters/formatted_letters/letter",
|
13
13
|
locals: { letter: letter },
|
14
14
|
encoding: "UTF-8"
|
@@ -35,7 +35,7 @@ module Renalware
|
|
35
35
|
through: :electronic_receipts,
|
36
36
|
source: :recipient
|
37
37
|
has_one :signature, dependent: :destroy
|
38
|
-
has_one :archive,
|
38
|
+
has_one :archive, inverse_of: :letter
|
39
39
|
serialize :pathology_snapshot, Pathology::ObservationsJsonbSerializer
|
40
40
|
|
41
41
|
accepts_nested_attributes_for :main_recipient
|
@@ -22,12 +22,17 @@ module Renalware
|
|
22
22
|
def prescriptions
|
23
23
|
presenter_klass = ::Renalware::Medications::PrescriptionPresenter
|
24
24
|
::OpenStruct.new(
|
25
|
-
current: present(
|
25
|
+
current: present(current_non_hd, presenter_klass),
|
26
26
|
recently_changed: present(recently_changed_current_prescriptions, presenter_klass),
|
27
|
-
recently_stopped: present(recently_stopped_prescriptions, presenter_klass)
|
27
|
+
recently_stopped: present(recently_stopped_prescriptions, presenter_klass),
|
28
|
+
current_hd: present(current_hd, presenter_klass)
|
28
29
|
)
|
29
30
|
end
|
30
31
|
|
32
|
+
def current_non_hd
|
33
|
+
@current_non_hd ||= current_prescriptions.where.not(administer_on_hd: true)
|
34
|
+
end
|
35
|
+
|
31
36
|
def current_prescriptions
|
32
37
|
@current_prescriptions ||= patient_prescriptions.current
|
33
38
|
end
|
@@ -36,7 +41,7 @@ module Renalware
|
|
36
41
|
# Because we terminated a prescription if the dosage changes, and create a new one,
|
37
42
|
# we just need to search for prescriptions created in the last 14 days.
|
38
43
|
def recently_changed_current_prescriptions
|
39
|
-
@
|
44
|
+
@recently_changed_current_prescriptions ||= begin
|
40
45
|
current_prescriptions.prescribed_between(from: 14.days.ago, to: ::Time.zone.now)
|
41
46
|
end
|
42
47
|
end
|
@@ -51,6 +56,10 @@ module Renalware
|
|
51
56
|
end
|
52
57
|
end
|
53
58
|
|
59
|
+
def current_hd
|
60
|
+
@current_hd ||= current_prescriptions.where(administer_on_hd: true)
|
61
|
+
end
|
62
|
+
|
54
63
|
def patient_prescriptions
|
55
64
|
@patient_prescriptions ||= begin
|
56
65
|
@patient.prescriptions
|
@@ -43,7 +43,7 @@ module Renalware
|
|
43
43
|
attr_reader :batch, :dir, :user
|
44
44
|
|
45
45
|
def append_files
|
46
|
-
folder = Rails.root.join("tmp
|
46
|
+
folder = Rails.root.join("tmp/batched_letters")
|
47
47
|
FileUtils.mkdir_p folder
|
48
48
|
pdf_file = folder.join("#{batch.id}.pdf")
|
49
49
|
glob = Dir.glob(dir.join("*.pdf"))
|
@@ -24,7 +24,7 @@ module Renalware
|
|
24
24
|
# using a hex digest of the interleaved letter but currently would not be.
|
25
25
|
# PdfLetterCache.fetch(letter) do
|
26
26
|
WickedPdf.new.pdf_from_string(
|
27
|
-
LettersController.new.
|
27
|
+
LettersController.new.render_to_string_with_wicked_pdf(
|
28
28
|
template: "/renalware/letters/printable_letters/show",
|
29
29
|
locals: { letter: letter, recipients: PrintableRecipients.for(letter) },
|
30
30
|
encoding: "UTF-8"
|
@@ -13,7 +13,7 @@ module Renalware
|
|
13
13
|
recipient = RecipientPresenter::WithCurrentAddress.new(recipient)
|
14
14
|
end
|
15
15
|
WickedPdf.new.pdf_from_string(
|
16
|
-
LettersController.new.
|
16
|
+
LettersController.new.render_to_string_with_wicked_pdf(
|
17
17
|
partial: "/renalware/letters/formatted_letters/recipient_address_cover_sheet",
|
18
18
|
locals: { recipient: recipient },
|
19
19
|
encoding: "UTF-8"
|
@@ -12,8 +12,11 @@ module Renalware
|
|
12
12
|
belongs_to :patient, touch: true
|
13
13
|
belongs_to :referrer
|
14
14
|
has_document class_name: "Renalware::LowClearance::ProfileDocument"
|
15
|
-
|
16
|
-
|
15
|
+
|
16
|
+
has_paper_trail(
|
17
|
+
versions: { class_name: "Renalware::LowClearance::Version" },
|
18
|
+
on: [:create, :update, :destroy]
|
19
|
+
)
|
17
20
|
end
|
18
21
|
end
|
19
22
|
end
|
@@ -10,8 +10,10 @@ module Renalware
|
|
10
10
|
|
11
11
|
attr_accessor :drug_select
|
12
12
|
|
13
|
-
has_paper_trail
|
14
|
-
|
13
|
+
has_paper_trail(
|
14
|
+
versions: { class_name: "Renalware::Medications::PrescriptionVersion" },
|
15
|
+
on: [:create, :update]
|
16
|
+
)
|
15
17
|
|
16
18
|
belongs_to :patient, touch: true
|
17
19
|
|
@@ -87,10 +89,6 @@ module Renalware
|
|
87
89
|
["drug_name asc", "prescribed_on desc"]
|
88
90
|
end
|
89
91
|
|
90
|
-
def self.policy_class
|
91
|
-
BasePolicy
|
92
|
-
end
|
93
|
-
|
94
92
|
# @section attributes
|
95
93
|
#
|
96
94
|
def terminated_by
|
@@ -17,6 +17,7 @@ module Renalware
|
|
17
17
|
attribute :urgent, Boolean, default: false
|
18
18
|
attribute :recipient_ids, Array, default: []
|
19
19
|
attribute :replying_to_message_id
|
20
|
+
attribute :public, Boolean, default: true
|
20
21
|
|
21
22
|
validates :body, presence: true
|
22
23
|
validates :subject, presence: true
|
@@ -30,10 +30,12 @@ module Renalware
|
|
30
30
|
# M.position_within_subgroup;
|
31
31
|
class CodeGroup < ApplicationRecord
|
32
32
|
include Accountable
|
33
|
+
|
33
34
|
has_paper_trail(
|
34
|
-
class_name: "Renalware::Pathology::Version",
|
35
|
+
versions: { class_name: "Renalware::Pathology::Version" },
|
35
36
|
on: [:create, :update, :destroy]
|
36
37
|
)
|
38
|
+
|
37
39
|
validates :name, presence: true, uniqueness: true
|
38
40
|
validates :description, presence: true
|
39
41
|
has_many(
|
@@ -11,7 +11,10 @@ module Renalware
|
|
11
11
|
# determines its order in the subgroup.
|
12
12
|
class CodeGroupMembership < ApplicationRecord
|
13
13
|
include Accountable
|
14
|
-
has_paper_trail
|
14
|
+
has_paper_trail(
|
15
|
+
versions: { class_name: "Renalware::Pathology::Version" },
|
16
|
+
on: [:create, :update, :destroy]
|
17
|
+
)
|
15
18
|
validates :position_within_subgroup, presence: true
|
16
19
|
validates :subgroup, presence: true
|
17
20
|
belongs_to :code_group
|
@@ -42,17 +42,17 @@ module Renalware
|
|
42
42
|
# the same.
|
43
43
|
Observation
|
44
44
|
.includes(:description)
|
45
|
-
.select(<<-SQL)
|
45
|
+
.select(<<-SQL.squish)
|
46
46
|
DISTINCT ON (pathology_observation_descriptions.id)
|
47
47
|
pathology_observations.*,
|
48
48
|
pathology_observation_descriptions.code AS description_code,
|
49
49
|
pathology_observation_descriptions.name AS description_name
|
50
50
|
SQL
|
51
|
-
.joins(<<-SQL)
|
51
|
+
.joins(<<-SQL.squish)
|
52
52
|
LEFT JOIN pathology_observation_requests
|
53
53
|
ON pathology_observations.request_id = pathology_observation_requests.id
|
54
54
|
SQL
|
55
|
-
.joins(<<-SQL)
|
55
|
+
.joins(<<-SQL.squish)
|
56
56
|
RIGHT JOIN pathology_observation_descriptions
|
57
57
|
ON pathology_observations.description_id = pathology_observation_descriptions.id
|
58
58
|
SQL
|
@@ -7,6 +7,19 @@ module Renalware
|
|
7
7
|
class MeasurementUnit < ApplicationRecord
|
8
8
|
validates :name, presence: true
|
9
9
|
has_many :observation_descriptions, inverse_of: :measurement_unit
|
10
|
+
belongs_to :ukrdc_measurement_unit, class_name: "Renalware::UKRDC::MeasurementUnit"
|
11
|
+
|
12
|
+
def self.for_collection_select
|
13
|
+
order(:name).select(:id, :name, :description).map { |row| [row.title, row.id] }
|
14
|
+
end
|
15
|
+
|
16
|
+
# A friendly string containing name and description (if present) in parentheses
|
17
|
+
# e.g. "l (litres)"
|
18
|
+
def title
|
19
|
+
return name if description.blank? || name == description
|
20
|
+
|
21
|
+
"#{name} (#{description})"
|
22
|
+
end
|
10
23
|
end
|
11
24
|
end
|
12
25
|
end
|
@@ -0,0 +1,44 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
require_dependency "renalware/pathology"
|
4
|
+
|
5
|
+
module Renalware
|
6
|
+
module Pathology
|
7
|
+
class NearestObservationsQuery
|
8
|
+
pattr_initialize [:patient!, :date!, :code_group!, look_behind_days!: 2]
|
9
|
+
|
10
|
+
# rubocop:disable Metrics/MethodLength
|
11
|
+
def call
|
12
|
+
pathology_patient
|
13
|
+
.observations
|
14
|
+
.joins(:description)
|
15
|
+
.where(description_id: observation_description_ids)
|
16
|
+
.where("observed_at >= ?", (date - look_behind_days.days).beginning_of_day)
|
17
|
+
.select(
|
18
|
+
:observed_at,
|
19
|
+
:result,
|
20
|
+
:description_id,
|
21
|
+
"pathology_observation_descriptions.code as code"
|
22
|
+
)
|
23
|
+
.map do |row|
|
24
|
+
{
|
25
|
+
code: row.code,
|
26
|
+
observed_on: row.observed_at.to_date,
|
27
|
+
result: row.result
|
28
|
+
}
|
29
|
+
end
|
30
|
+
end
|
31
|
+
# rubocop:enable Metrics/MethodLength
|
32
|
+
|
33
|
+
private
|
34
|
+
|
35
|
+
def pathology_patient
|
36
|
+
Pathology.cast_patient(patient)
|
37
|
+
end
|
38
|
+
|
39
|
+
def observation_description_ids
|
40
|
+
@observation_description_ids ||= code_group.memberships.pluck(:observation_description_id)
|
41
|
+
end
|
42
|
+
end
|
43
|
+
end
|
44
|
+
end
|
@@ -6,15 +6,14 @@ module Renalware
|
|
6
6
|
module Pathology
|
7
7
|
class ObservationDescription < ApplicationRecord
|
8
8
|
belongs_to :measurement_unit
|
9
|
+
belongs_to :suggested_measurement_unit, class_name: "MeasurementUnit"
|
10
|
+
|
9
11
|
has_many :observations,
|
10
12
|
class_name: "Pathology::Observation",
|
11
13
|
inverse_of: :description,
|
12
14
|
dependent: :restrict_with_exception
|
13
|
-
has_many :code_group_memberships,
|
14
|
-
|
15
|
-
dependent: :destroy
|
16
|
-
has_many :code_groups,
|
17
|
-
through: :code_group_memberships
|
15
|
+
has_many :code_group_memberships, dependent: :destroy
|
16
|
+
has_many :code_groups, through: :code_group_memberships
|
18
17
|
|
19
18
|
scope :in_display_order, lambda {
|
20
19
|
where("display_group is not null and display_order is not null")
|
@@ -24,6 +23,10 @@ module Renalware
|
|
24
23
|
enum rr_type: { rr_type_simple: 0, rr_type_interpretation: 1 }
|
25
24
|
enum rr_coding_standard: { ukrr: 0, pv: 1 }
|
26
25
|
|
26
|
+
validates :lower_threshold, numericality: { allow_nil: true }
|
27
|
+
validates :upper_threshold, numericality: { allow_nil: true }
|
28
|
+
validate :lower_threshold_lteq_upper_threshold
|
29
|
+
|
27
30
|
def self.for(codes)
|
28
31
|
ObservationDescriptionsByCodeQuery.new(codes: codes).call
|
29
32
|
end
|
@@ -31,6 +34,21 @@ module Renalware
|
|
31
34
|
def to_s
|
32
35
|
code
|
33
36
|
end
|
37
|
+
|
38
|
+
def self.policy_class
|
39
|
+
BasePolicy
|
40
|
+
end
|
41
|
+
|
42
|
+
private
|
43
|
+
|
44
|
+
def lower_threshold_lteq_upper_threshold
|
45
|
+
return if lower_threshold.blank?
|
46
|
+
return if upper_threshold.blank?
|
47
|
+
|
48
|
+
if lower_threshold.to_f >= upper_threshold.to_f
|
49
|
+
errors.add(:lower_threshold, "must be less than the upper threshold")
|
50
|
+
end
|
51
|
+
end
|
34
52
|
end
|
35
53
|
end
|
36
54
|
end
|