lemongraph 0.0.1

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Files changed (161) hide show
  1. checksums.yaml +7 -0
  2. data/.yardopts +8 -0
  3. data/LICENSE +674 -0
  4. data/README.md +6 -0
  5. data/ext/lemon-1.3.1/AUTHORS +26 -0
  6. data/ext/lemon-1.3.1/CMakeLists.txt +371 -0
  7. data/ext/lemon-1.3.1/INSTALL +167 -0
  8. data/ext/lemon-1.3.1/LICENSE +32 -0
  9. data/ext/lemon-1.3.1/NEWS +337 -0
  10. data/ext/lemon-1.3.1/README +50 -0
  11. data/ext/lemon-1.3.1/cmake/FindCOIN.cmake +110 -0
  12. data/ext/lemon-1.3.1/cmake/FindGLPK.cmake +55 -0
  13. data/ext/lemon-1.3.1/cmake/FindGhostscript.cmake +10 -0
  14. data/ext/lemon-1.3.1/cmake/FindILOG.cmake +102 -0
  15. data/ext/lemon-1.3.1/cmake/FindSOPLEX.cmake +23 -0
  16. data/ext/lemon-1.3.1/cmake/LEMONConfig.cmake.in +13 -0
  17. data/ext/lemon-1.3.1/cmake/nsis/lemon.ico +0 -0
  18. data/ext/lemon-1.3.1/cmake/nsis/uninstall.ico +0 -0
  19. data/ext/lemon-1.3.1/cmake/version.cmake +1 -0
  20. data/ext/lemon-1.3.1/cmake/version.cmake.in +1 -0
  21. data/ext/lemon-1.3.1/contrib/CMakeLists.txt +19 -0
  22. data/ext/lemon-1.3.1/lemon/CMakeLists.txt +91 -0
  23. data/ext/lemon-1.3.1/lemon/adaptors.h +3638 -0
  24. data/ext/lemon-1.3.1/lemon/arg_parser.cc +474 -0
  25. data/ext/lemon-1.3.1/lemon/arg_parser.h +440 -0
  26. data/ext/lemon-1.3.1/lemon/assert.h +214 -0
  27. data/ext/lemon-1.3.1/lemon/base.cc +37 -0
  28. data/ext/lemon-1.3.1/lemon/bellman_ford.h +1116 -0
  29. data/ext/lemon-1.3.1/lemon/bfs.h +1754 -0
  30. data/ext/lemon-1.3.1/lemon/bin_heap.h +347 -0
  31. data/ext/lemon-1.3.1/lemon/binomial_heap.h +445 -0
  32. data/ext/lemon-1.3.1/lemon/bits/alteration_notifier.h +472 -0
  33. data/ext/lemon-1.3.1/lemon/bits/array_map.h +351 -0
  34. data/ext/lemon-1.3.1/lemon/bits/bezier.h +174 -0
  35. data/ext/lemon-1.3.1/lemon/bits/default_map.h +182 -0
  36. data/ext/lemon-1.3.1/lemon/bits/edge_set_extender.h +627 -0
  37. data/ext/lemon-1.3.1/lemon/bits/enable_if.h +131 -0
  38. data/ext/lemon-1.3.1/lemon/bits/graph_adaptor_extender.h +401 -0
  39. data/ext/lemon-1.3.1/lemon/bits/graph_extender.h +1332 -0
  40. data/ext/lemon-1.3.1/lemon/bits/lock.h +65 -0
  41. data/ext/lemon-1.3.1/lemon/bits/map_extender.h +332 -0
  42. data/ext/lemon-1.3.1/lemon/bits/path_dump.h +177 -0
  43. data/ext/lemon-1.3.1/lemon/bits/solver_bits.h +194 -0
  44. data/ext/lemon-1.3.1/lemon/bits/traits.h +388 -0
  45. data/ext/lemon-1.3.1/lemon/bits/variant.h +494 -0
  46. data/ext/lemon-1.3.1/lemon/bits/vector_map.h +244 -0
  47. data/ext/lemon-1.3.1/lemon/bits/windows.cc +166 -0
  48. data/ext/lemon-1.3.1/lemon/bits/windows.h +44 -0
  49. data/ext/lemon-1.3.1/lemon/bucket_heap.h +594 -0
  50. data/ext/lemon-1.3.1/lemon/capacity_scaling.h +1014 -0
  51. data/ext/lemon-1.3.1/lemon/cbc.cc +460 -0
  52. data/ext/lemon-1.3.1/lemon/cbc.h +129 -0
  53. data/ext/lemon-1.3.1/lemon/christofides_tsp.h +254 -0
  54. data/ext/lemon-1.3.1/lemon/circulation.h +807 -0
  55. data/ext/lemon-1.3.1/lemon/clp.cc +464 -0
  56. data/ext/lemon-1.3.1/lemon/clp.h +164 -0
  57. data/ext/lemon-1.3.1/lemon/color.cc +44 -0
  58. data/ext/lemon-1.3.1/lemon/color.h +204 -0
  59. data/ext/lemon-1.3.1/lemon/concept_check.h +77 -0
  60. data/ext/lemon-1.3.1/lemon/concepts/bpgraph.h +1029 -0
  61. data/ext/lemon-1.3.1/lemon/concepts/digraph.h +491 -0
  62. data/ext/lemon-1.3.1/lemon/concepts/graph.h +788 -0
  63. data/ext/lemon-1.3.1/lemon/concepts/graph_components.h +2134 -0
  64. data/ext/lemon-1.3.1/lemon/concepts/heap.h +324 -0
  65. data/ext/lemon-1.3.1/lemon/concepts/maps.h +223 -0
  66. data/ext/lemon-1.3.1/lemon/concepts/path.h +312 -0
  67. data/ext/lemon-1.3.1/lemon/config.h.in +22 -0
  68. data/ext/lemon-1.3.1/lemon/connectivity.h +1688 -0
  69. data/ext/lemon-1.3.1/lemon/core.h +2506 -0
  70. data/ext/lemon-1.3.1/lemon/cost_scaling.h +1607 -0
  71. data/ext/lemon-1.3.1/lemon/counter.h +249 -0
  72. data/ext/lemon-1.3.1/lemon/cplex.cc +994 -0
  73. data/ext/lemon-1.3.1/lemon/cplex.h +292 -0
  74. data/ext/lemon-1.3.1/lemon/cycle_canceling.h +1230 -0
  75. data/ext/lemon-1.3.1/lemon/dfs.h +1637 -0
  76. data/ext/lemon-1.3.1/lemon/dheap.h +352 -0
  77. data/ext/lemon-1.3.1/lemon/dijkstra.h +1303 -0
  78. data/ext/lemon-1.3.1/lemon/dim2.h +726 -0
  79. data/ext/lemon-1.3.1/lemon/dimacs.h +448 -0
  80. data/ext/lemon-1.3.1/lemon/edge_set.h +1420 -0
  81. data/ext/lemon-1.3.1/lemon/edmonds_karp.h +556 -0
  82. data/ext/lemon-1.3.1/lemon/elevator.h +982 -0
  83. data/ext/lemon-1.3.1/lemon/error.h +276 -0
  84. data/ext/lemon-1.3.1/lemon/euler.h +287 -0
  85. data/ext/lemon-1.3.1/lemon/fib_heap.h +475 -0
  86. data/ext/lemon-1.3.1/lemon/fractional_matching.h +2139 -0
  87. data/ext/lemon-1.3.1/lemon/full_graph.h +1082 -0
  88. data/ext/lemon-1.3.1/lemon/glpk.cc +1012 -0
  89. data/ext/lemon-1.3.1/lemon/glpk.h +263 -0
  90. data/ext/lemon-1.3.1/lemon/gomory_hu.h +568 -0
  91. data/ext/lemon-1.3.1/lemon/graph_to_eps.h +1186 -0
  92. data/ext/lemon-1.3.1/lemon/greedy_tsp.h +251 -0
  93. data/ext/lemon-1.3.1/lemon/grid_graph.h +699 -0
  94. data/ext/lemon-1.3.1/lemon/grosso_locatelli_pullan_mc.h +840 -0
  95. data/ext/lemon-1.3.1/lemon/hao_orlin.h +1015 -0
  96. data/ext/lemon-1.3.1/lemon/hartmann_orlin_mmc.h +654 -0
  97. data/ext/lemon-1.3.1/lemon/howard_mmc.h +651 -0
  98. data/ext/lemon-1.3.1/lemon/hypercube_graph.h +459 -0
  99. data/ext/lemon-1.3.1/lemon/insertion_tsp.h +533 -0
  100. data/ext/lemon-1.3.1/lemon/karp_mmc.h +590 -0
  101. data/ext/lemon-1.3.1/lemon/kruskal.h +324 -0
  102. data/ext/lemon-1.3.1/lemon/lemon.pc.in +10 -0
  103. data/ext/lemon-1.3.1/lemon/lgf_reader.h +3854 -0
  104. data/ext/lemon-1.3.1/lemon/lgf_writer.h +2687 -0
  105. data/ext/lemon-1.3.1/lemon/list_graph.h +2510 -0
  106. data/ext/lemon-1.3.1/lemon/lp.h +95 -0
  107. data/ext/lemon-1.3.1/lemon/lp_base.cc +30 -0
  108. data/ext/lemon-1.3.1/lemon/lp_base.h +2147 -0
  109. data/ext/lemon-1.3.1/lemon/lp_skeleton.cc +143 -0
  110. data/ext/lemon-1.3.1/lemon/lp_skeleton.h +234 -0
  111. data/ext/lemon-1.3.1/lemon/maps.h +4057 -0
  112. data/ext/lemon-1.3.1/lemon/matching.h +3505 -0
  113. data/ext/lemon-1.3.1/lemon/math.h +77 -0
  114. data/ext/lemon-1.3.1/lemon/max_cardinality_search.h +794 -0
  115. data/ext/lemon-1.3.1/lemon/min_cost_arborescence.h +808 -0
  116. data/ext/lemon-1.3.1/lemon/nagamochi_ibaraki.h +702 -0
  117. data/ext/lemon-1.3.1/lemon/nauty_reader.h +113 -0
  118. data/ext/lemon-1.3.1/lemon/nearest_neighbor_tsp.h +238 -0
  119. data/ext/lemon-1.3.1/lemon/network_simplex.h +1659 -0
  120. data/ext/lemon-1.3.1/lemon/opt2_tsp.h +367 -0
  121. data/ext/lemon-1.3.1/lemon/pairing_heap.h +474 -0
  122. data/ext/lemon-1.3.1/lemon/path.h +1164 -0
  123. data/ext/lemon-1.3.1/lemon/planarity.h +2754 -0
  124. data/ext/lemon-1.3.1/lemon/preflow.h +985 -0
  125. data/ext/lemon-1.3.1/lemon/quad_heap.h +343 -0
  126. data/ext/lemon-1.3.1/lemon/radix_heap.h +438 -0
  127. data/ext/lemon-1.3.1/lemon/radix_sort.h +487 -0
  128. data/ext/lemon-1.3.1/lemon/random.cc +29 -0
  129. data/ext/lemon-1.3.1/lemon/random.h +1005 -0
  130. data/ext/lemon-1.3.1/lemon/smart_graph.h +1344 -0
  131. data/ext/lemon-1.3.1/lemon/soplex.cc +465 -0
  132. data/ext/lemon-1.3.1/lemon/soplex.h +158 -0
  133. data/ext/lemon-1.3.1/lemon/static_graph.h +476 -0
  134. data/ext/lemon-1.3.1/lemon/suurballe.h +776 -0
  135. data/ext/lemon-1.3.1/lemon/time_measure.h +610 -0
  136. data/ext/lemon-1.3.1/lemon/tolerance.h +242 -0
  137. data/ext/lemon-1.3.1/lemon/unionfind.h +1824 -0
  138. data/ext/lemon-1.3.1/scripts/unify-sources.sh +390 -0
  139. data/ext/lemon-1.3.1/scripts/valgrind-wrapper.sh +22 -0
  140. data/ext/lemongraph/arc_map.cc +1007 -0
  141. data/ext/lemongraph/digraph.cc +282 -0
  142. data/ext/lemongraph/digraph_arc.cc +153 -0
  143. data/ext/lemongraph/digraph_node.cc +277 -0
  144. data/ext/lemongraph/edge_map.cc +770 -0
  145. data/ext/lemongraph/extconf.rb +53 -0
  146. data/ext/lemongraph/graph.cc +351 -0
  147. data/ext/lemongraph/graph_arc.cc +95 -0
  148. data/ext/lemongraph/graph_edge.cc +153 -0
  149. data/ext/lemongraph/graph_item.cc +76 -0
  150. data/ext/lemongraph/graph_node.cc +321 -0
  151. data/ext/lemongraph/lemongraph.cc +260 -0
  152. data/ext/lemongraph/lemongraph.hh +295 -0
  153. data/ext/lemongraph/lemongraph.map +6 -0
  154. data/ext/lemongraph/lemongraph_export.hh +31 -0
  155. data/ext/lemongraph/node_map.cc +1011 -0
  156. data/lemongraph.gemspec +176 -0
  157. data/lib/lemongraph/graphviz.rb +240 -0
  158. data/lib/lemongraph/version.rb +4 -0
  159. data/lib/lemongraph.rb +21 -0
  160. data/samples/lemondeps.rb +38 -0
  161. metadata +202 -0
@@ -0,0 +1,254 @@
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+ /* -*- mode: C++; indent-tabs-mode: nil; -*-
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+ *
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+ * This file is a part of LEMON, a generic C++ optimization library.
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+ *
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+ * Copyright (C) 2003-2013
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+ * Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
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+ * (Egervary Research Group on Combinatorial Optimization, EGRES).
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+ *
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+ * Permission to use, modify and distribute this software is granted
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+ * provided that this copyright notice appears in all copies. For
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+ * precise terms see the accompanying LICENSE file.
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+ *
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+ * This software is provided "AS IS" with no warranty of any kind,
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+ * express or implied, and with no claim as to its suitability for any
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+ * purpose.
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+ *
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+ */
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+
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+ #ifndef LEMON_CHRISTOFIDES_TSP_H
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+ #define LEMON_CHRISTOFIDES_TSP_H
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+
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+ /// \ingroup tsp
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+ /// \file
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+ /// \brief Christofides algorithm for symmetric TSP
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+
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+ #include <lemon/full_graph.h>
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+ #include <lemon/smart_graph.h>
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+ #include <lemon/kruskal.h>
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+ #include <lemon/matching.h>
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+ #include <lemon/euler.h>
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+
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+ namespace lemon {
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+
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+ /// \ingroup tsp
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+ ///
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+ /// \brief Christofides algorithm for symmetric TSP.
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+ ///
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+ /// ChristofidesTsp implements Christofides' heuristic for solving
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+ /// symmetric \ref tsp "TSP".
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+ ///
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+ /// This a well-known approximation method for the TSP problem with
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+ /// metric cost function.
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+ /// It has a guaranteed approximation factor of 3/2 (i.e. it finds a tour
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+ /// whose total cost is at most 3/2 of the optimum), but it usually
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+ /// provides better solutions in practice.
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+ /// This implementation runs in O(n<sup>3</sup>log(n)) time.
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+ ///
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+ /// The algorithm starts with a \ref spantree "minimum cost spanning tree" and
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+ /// finds a \ref MaxWeightedPerfectMatching "minimum cost perfect matching"
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+ /// in the subgraph induced by the nodes that have odd degree in the
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+ /// spanning tree.
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+ /// Finally, it constructs the tour from the \ref EulerIt "Euler traversal"
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+ /// of the union of the spanning tree and the matching.
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+ /// During this last step, the algorithm simply skips the visited nodes
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+ /// (i.e. creates shortcuts) assuming that the triangle inequality holds
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+ /// for the cost function.
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+ ///
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+ /// \tparam CM Type of the cost map.
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+ ///
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+ /// \warning CM::Value must be a signed number type.
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+ template <typename CM>
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+ class ChristofidesTsp
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+ {
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+ public:
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+
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+ /// Type of the cost map
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+ typedef CM CostMap;
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+ /// Type of the edge costs
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+ typedef typename CM::Value Cost;
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+
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+ private:
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+
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+ GRAPH_TYPEDEFS(FullGraph);
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+
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+ const FullGraph &_gr;
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+ const CostMap &_cost;
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+ std::vector<Node> _path;
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+ Cost _sum;
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+
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+ public:
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+
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+ /// \brief Constructor
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+ ///
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+ /// Constructor.
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+ /// \param gr The \ref FullGraph "full graph" the algorithm runs on.
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+ /// \param cost The cost map.
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+ ChristofidesTsp(const FullGraph &gr, const CostMap &cost)
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+ : _gr(gr), _cost(cost) {}
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+
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+ /// \name Execution Control
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+ /// @{
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+
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+ /// \brief Runs the algorithm.
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+ ///
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+ /// This function runs the algorithm.
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+ ///
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+ /// \return The total cost of the found tour.
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+ Cost run() {
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+ _path.clear();
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+
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+ if (_gr.nodeNum() == 0) return _sum = 0;
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+ else if (_gr.nodeNum() == 1) {
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+ _path.push_back(_gr(0));
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+ return _sum = 0;
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+ }
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+ else if (_gr.nodeNum() == 2) {
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+ _path.push_back(_gr(0));
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+ _path.push_back(_gr(1));
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+ return _sum = 2 * _cost[_gr.edge(_gr(0), _gr(1))];
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+ }
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+
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+ // Compute min. cost spanning tree
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+ std::vector<Edge> tree;
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+ kruskal(_gr, _cost, std::back_inserter(tree));
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+
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+ FullGraph::NodeMap<int> deg(_gr, 0);
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+ for (int i = 0; i != int(tree.size()); ++i) {
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+ Edge e = tree[i];
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+ ++deg[_gr.u(e)];
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+ ++deg[_gr.v(e)];
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+ }
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+
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+ // Copy the induced subgraph of odd nodes
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+ std::vector<Node> odd_nodes;
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+ for (NodeIt u(_gr); u != INVALID; ++u) {
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+ if (deg[u] % 2 == 1) odd_nodes.push_back(u);
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+ }
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+
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+ SmartGraph sgr;
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+ SmartGraph::EdgeMap<Cost> scost(sgr);
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+ for (int i = 0; i != int(odd_nodes.size()); ++i) {
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+ sgr.addNode();
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+ }
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+ for (int i = 0; i != int(odd_nodes.size()); ++i) {
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+ for (int j = 0; j != int(odd_nodes.size()); ++j) {
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+ if (j == i) continue;
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+ SmartGraph::Edge e =
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+ sgr.addEdge(sgr.nodeFromId(i), sgr.nodeFromId(j));
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+ scost[e] = -_cost[_gr.edge(odd_nodes[i], odd_nodes[j])];
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+ }
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+ }
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+
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+ // Compute min. cost perfect matching
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+ MaxWeightedPerfectMatching<SmartGraph, SmartGraph::EdgeMap<Cost> >
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+ mwpm(sgr, scost);
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+ mwpm.run();
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+
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+ for (SmartGraph::EdgeIt e(sgr); e != INVALID; ++e) {
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+ if (mwpm.matching(e)) {
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+ tree.push_back( _gr.edge(odd_nodes[sgr.id(sgr.u(e))],
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+ odd_nodes[sgr.id(sgr.v(e))]) );
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+ }
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+ }
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+
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+ // Join the spanning tree and the matching
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+ sgr.clear();
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+ for (int i = 0; i != _gr.nodeNum(); ++i) {
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+ sgr.addNode();
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+ }
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+ for (int i = 0; i != int(tree.size()); ++i) {
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+ int ui = _gr.id(_gr.u(tree[i])),
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+ vi = _gr.id(_gr.v(tree[i]));
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+ sgr.addEdge(sgr.nodeFromId(ui), sgr.nodeFromId(vi));
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+ }
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+
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+ // Compute the tour from the Euler traversal
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+ SmartGraph::NodeMap<bool> visited(sgr, false);
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+ for (EulerIt<SmartGraph> e(sgr); e != INVALID; ++e) {
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+ SmartGraph::Node n = sgr.target(e);
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+ if (!visited[n]) {
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+ _path.push_back(_gr(sgr.id(n)));
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+ visited[n] = true;
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+ }
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+ }
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+
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+ _sum = _cost[_gr.edge(_path.back(), _path.front())];
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+ for (int i = 0; i < int(_path.size())-1; ++i) {
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+ _sum += _cost[_gr.edge(_path[i], _path[i+1])];
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+ }
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+
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+ return _sum;
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+ }
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+
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+ /// @}
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+
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+ /// \name Query Functions
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+ /// @{
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+
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+ /// \brief The total cost of the found tour.
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+ ///
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+ /// This function returns the total cost of the found tour.
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+ ///
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+ /// \pre run() must be called before using this function.
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+ Cost tourCost() const {
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+ return _sum;
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+ }
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+
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+ /// \brief Returns a const reference to the node sequence of the
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+ /// found tour.
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+ ///
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+ /// This function returns a const reference to a vector
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+ /// that stores the node sequence of the found tour.
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+ ///
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+ /// \pre run() must be called before using this function.
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+ const std::vector<Node>& tourNodes() const {
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+ return _path;
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+ }
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+
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+ /// \brief Gives back the node sequence of the found tour.
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+ ///
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+ /// This function copies the node sequence of the found tour into
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+ /// an STL container through the given output iterator. The
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+ /// <tt>value_type</tt> of the container must be <tt>FullGraph::Node</tt>.
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+ /// For example,
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+ /// \code
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+ /// std::vector<FullGraph::Node> nodes(countNodes(graph));
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+ /// tsp.tourNodes(nodes.begin());
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+ /// \endcode
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+ /// or
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+ /// \code
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+ /// std::list<FullGraph::Node> nodes;
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+ /// tsp.tourNodes(std::back_inserter(nodes));
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+ /// \endcode
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+ ///
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+ /// \pre run() must be called before using this function.
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+ template <typename Iterator>
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+ void tourNodes(Iterator out) const {
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+ std::copy(_path.begin(), _path.end(), out);
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+ }
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+
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+ /// \brief Gives back the found tour as a path.
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+ ///
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+ /// This function copies the found tour as a list of arcs/edges into
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+ /// the given \ref lemon::concepts::Path "path structure".
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+ ///
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+ /// \pre run() must be called before using this function.
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+ template <typename Path>
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+ void tour(Path &path) const {
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+ path.clear();
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+ for (int i = 0; i < int(_path.size()) - 1; ++i) {
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+ path.addBack(_gr.arc(_path[i], _path[i+1]));
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+ }
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+ if (int(_path.size()) >= 2) {
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+ path.addBack(_gr.arc(_path.back(), _path.front()));
245
+ }
246
+ }
247
+
248
+ /// @}
249
+
250
+ };
251
+
252
+ }; // namespace lemon
253
+
254
+ #endif