faiss 0.2.0 → 0.2.1
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- checksums.yaml +4 -4
- data/CHANGELOG.md +4 -0
- data/lib/faiss/version.rb +1 -1
- data/vendor/faiss/faiss/AutoTune.cpp +292 -291
- data/vendor/faiss/faiss/AutoTune.h +55 -56
- data/vendor/faiss/faiss/Clustering.cpp +334 -195
- data/vendor/faiss/faiss/Clustering.h +88 -35
- data/vendor/faiss/faiss/IVFlib.cpp +171 -195
- data/vendor/faiss/faiss/IVFlib.h +48 -51
- data/vendor/faiss/faiss/Index.cpp +85 -103
- data/vendor/faiss/faiss/Index.h +54 -48
- data/vendor/faiss/faiss/Index2Layer.cpp +139 -164
- data/vendor/faiss/faiss/Index2Layer.h +22 -22
- data/vendor/faiss/faiss/IndexBinary.cpp +45 -37
- data/vendor/faiss/faiss/IndexBinary.h +140 -132
- data/vendor/faiss/faiss/IndexBinaryFlat.cpp +73 -53
- data/vendor/faiss/faiss/IndexBinaryFlat.h +29 -24
- data/vendor/faiss/faiss/IndexBinaryFromFloat.cpp +46 -43
- data/vendor/faiss/faiss/IndexBinaryFromFloat.h +16 -15
- data/vendor/faiss/faiss/IndexBinaryHNSW.cpp +215 -232
- data/vendor/faiss/faiss/IndexBinaryHNSW.h +25 -24
- data/vendor/faiss/faiss/IndexBinaryHash.cpp +182 -177
- data/vendor/faiss/faiss/IndexBinaryHash.h +41 -34
- data/vendor/faiss/faiss/IndexBinaryIVF.cpp +489 -461
- data/vendor/faiss/faiss/IndexBinaryIVF.h +97 -68
- data/vendor/faiss/faiss/IndexFlat.cpp +116 -147
- data/vendor/faiss/faiss/IndexFlat.h +35 -46
- data/vendor/faiss/faiss/IndexHNSW.cpp +372 -348
- data/vendor/faiss/faiss/IndexHNSW.h +57 -41
- data/vendor/faiss/faiss/IndexIVF.cpp +474 -454
- data/vendor/faiss/faiss/IndexIVF.h +146 -113
- data/vendor/faiss/faiss/IndexIVFFlat.cpp +248 -250
- data/vendor/faiss/faiss/IndexIVFFlat.h +48 -51
- data/vendor/faiss/faiss/IndexIVFPQ.cpp +457 -516
- data/vendor/faiss/faiss/IndexIVFPQ.h +74 -66
- data/vendor/faiss/faiss/IndexIVFPQFastScan.cpp +406 -372
- data/vendor/faiss/faiss/IndexIVFPQFastScan.h +82 -57
- data/vendor/faiss/faiss/IndexIVFPQR.cpp +104 -102
- data/vendor/faiss/faiss/IndexIVFPQR.h +33 -28
- data/vendor/faiss/faiss/IndexIVFSpectralHash.cpp +125 -133
- data/vendor/faiss/faiss/IndexIVFSpectralHash.h +19 -21
- data/vendor/faiss/faiss/IndexLSH.cpp +75 -96
- data/vendor/faiss/faiss/IndexLSH.h +21 -26
- data/vendor/faiss/faiss/IndexLattice.cpp +42 -56
- data/vendor/faiss/faiss/IndexLattice.h +11 -16
- data/vendor/faiss/faiss/IndexNNDescent.cpp +231 -0
- data/vendor/faiss/faiss/IndexNNDescent.h +72 -0
- data/vendor/faiss/faiss/IndexNSG.cpp +303 -0
- data/vendor/faiss/faiss/IndexNSG.h +85 -0
- data/vendor/faiss/faiss/IndexPQ.cpp +405 -464
- data/vendor/faiss/faiss/IndexPQ.h +64 -67
- data/vendor/faiss/faiss/IndexPQFastScan.cpp +143 -170
- data/vendor/faiss/faiss/IndexPQFastScan.h +46 -32
- data/vendor/faiss/faiss/IndexPreTransform.cpp +120 -150
- data/vendor/faiss/faiss/IndexPreTransform.h +33 -36
- data/vendor/faiss/faiss/IndexRefine.cpp +115 -131
- data/vendor/faiss/faiss/IndexRefine.h +22 -23
- data/vendor/faiss/faiss/IndexReplicas.cpp +147 -153
- data/vendor/faiss/faiss/IndexReplicas.h +62 -56
- data/vendor/faiss/faiss/IndexResidual.cpp +291 -0
- data/vendor/faiss/faiss/IndexResidual.h +152 -0
- data/vendor/faiss/faiss/IndexScalarQuantizer.cpp +120 -155
- data/vendor/faiss/faiss/IndexScalarQuantizer.h +41 -45
- data/vendor/faiss/faiss/IndexShards.cpp +256 -240
- data/vendor/faiss/faiss/IndexShards.h +85 -73
- data/vendor/faiss/faiss/MatrixStats.cpp +112 -97
- data/vendor/faiss/faiss/MatrixStats.h +7 -10
- data/vendor/faiss/faiss/MetaIndexes.cpp +135 -157
- data/vendor/faiss/faiss/MetaIndexes.h +40 -34
- data/vendor/faiss/faiss/MetricType.h +7 -7
- data/vendor/faiss/faiss/VectorTransform.cpp +652 -474
- data/vendor/faiss/faiss/VectorTransform.h +61 -89
- data/vendor/faiss/faiss/clone_index.cpp +77 -73
- data/vendor/faiss/faiss/clone_index.h +4 -9
- data/vendor/faiss/faiss/gpu/GpuAutoTune.cpp +33 -38
- data/vendor/faiss/faiss/gpu/GpuAutoTune.h +11 -9
- data/vendor/faiss/faiss/gpu/GpuCloner.cpp +197 -170
- data/vendor/faiss/faiss/gpu/GpuCloner.h +53 -35
- data/vendor/faiss/faiss/gpu/GpuClonerOptions.cpp +12 -14
- data/vendor/faiss/faiss/gpu/GpuClonerOptions.h +27 -25
- data/vendor/faiss/faiss/gpu/GpuDistance.h +116 -112
- data/vendor/faiss/faiss/gpu/GpuFaissAssert.h +1 -2
- data/vendor/faiss/faiss/gpu/GpuIndex.h +134 -137
- data/vendor/faiss/faiss/gpu/GpuIndexBinaryFlat.h +76 -73
- data/vendor/faiss/faiss/gpu/GpuIndexFlat.h +173 -162
- data/vendor/faiss/faiss/gpu/GpuIndexIVF.h +67 -64
- data/vendor/faiss/faiss/gpu/GpuIndexIVFFlat.h +89 -86
- data/vendor/faiss/faiss/gpu/GpuIndexIVFPQ.h +150 -141
- data/vendor/faiss/faiss/gpu/GpuIndexIVFScalarQuantizer.h +101 -103
- data/vendor/faiss/faiss/gpu/GpuIndicesOptions.h +17 -16
- data/vendor/faiss/faiss/gpu/GpuResources.cpp +116 -128
- data/vendor/faiss/faiss/gpu/GpuResources.h +182 -186
- data/vendor/faiss/faiss/gpu/StandardGpuResources.cpp +433 -422
- data/vendor/faiss/faiss/gpu/StandardGpuResources.h +131 -130
- data/vendor/faiss/faiss/gpu/impl/InterleavedCodes.cpp +468 -456
- data/vendor/faiss/faiss/gpu/impl/InterleavedCodes.h +25 -19
- data/vendor/faiss/faiss/gpu/impl/RemapIndices.cpp +22 -20
- data/vendor/faiss/faiss/gpu/impl/RemapIndices.h +9 -8
- data/vendor/faiss/faiss/gpu/perf/IndexWrapper-inl.h +39 -44
- data/vendor/faiss/faiss/gpu/perf/IndexWrapper.h +16 -14
- data/vendor/faiss/faiss/gpu/perf/PerfClustering.cpp +77 -71
- data/vendor/faiss/faiss/gpu/perf/PerfIVFPQAdd.cpp +109 -88
- data/vendor/faiss/faiss/gpu/perf/WriteIndex.cpp +75 -64
- data/vendor/faiss/faiss/gpu/test/TestCodePacking.cpp +230 -215
- data/vendor/faiss/faiss/gpu/test/TestGpuIndexBinaryFlat.cpp +80 -86
- data/vendor/faiss/faiss/gpu/test/TestGpuIndexFlat.cpp +284 -277
- data/vendor/faiss/faiss/gpu/test/TestGpuIndexIVFFlat.cpp +416 -416
- data/vendor/faiss/faiss/gpu/test/TestGpuIndexIVFPQ.cpp +611 -517
- data/vendor/faiss/faiss/gpu/test/TestGpuIndexIVFScalarQuantizer.cpp +166 -164
- data/vendor/faiss/faiss/gpu/test/TestGpuMemoryException.cpp +61 -53
- data/vendor/faiss/faiss/gpu/test/TestUtils.cpp +274 -238
- data/vendor/faiss/faiss/gpu/test/TestUtils.h +73 -57
- data/vendor/faiss/faiss/gpu/test/demo_ivfpq_indexing_gpu.cpp +47 -50
- data/vendor/faiss/faiss/gpu/utils/DeviceUtils.h +79 -72
- data/vendor/faiss/faiss/gpu/utils/StackDeviceMemory.cpp +140 -146
- data/vendor/faiss/faiss/gpu/utils/StackDeviceMemory.h +69 -71
- data/vendor/faiss/faiss/gpu/utils/StaticUtils.h +21 -16
- data/vendor/faiss/faiss/gpu/utils/Timer.cpp +25 -29
- data/vendor/faiss/faiss/gpu/utils/Timer.h +30 -29
- data/vendor/faiss/faiss/impl/AdditiveQuantizer.cpp +270 -0
- data/vendor/faiss/faiss/impl/AdditiveQuantizer.h +115 -0
- data/vendor/faiss/faiss/impl/AuxIndexStructures.cpp +90 -120
- data/vendor/faiss/faiss/impl/AuxIndexStructures.h +81 -65
- data/vendor/faiss/faiss/impl/FaissAssert.h +73 -58
- data/vendor/faiss/faiss/impl/FaissException.cpp +56 -48
- data/vendor/faiss/faiss/impl/FaissException.h +41 -29
- data/vendor/faiss/faiss/impl/HNSW.cpp +595 -611
- data/vendor/faiss/faiss/impl/HNSW.h +179 -200
- data/vendor/faiss/faiss/impl/LocalSearchQuantizer.cpp +672 -0
- data/vendor/faiss/faiss/impl/LocalSearchQuantizer.h +172 -0
- data/vendor/faiss/faiss/impl/NNDescent.cpp +487 -0
- data/vendor/faiss/faiss/impl/NNDescent.h +154 -0
- data/vendor/faiss/faiss/impl/NSG.cpp +682 -0
- data/vendor/faiss/faiss/impl/NSG.h +199 -0
- data/vendor/faiss/faiss/impl/PolysemousTraining.cpp +484 -454
- data/vendor/faiss/faiss/impl/PolysemousTraining.h +52 -55
- data/vendor/faiss/faiss/impl/ProductQuantizer-inl.h +26 -47
- data/vendor/faiss/faiss/impl/ProductQuantizer.cpp +469 -459
- data/vendor/faiss/faiss/impl/ProductQuantizer.h +76 -87
- data/vendor/faiss/faiss/impl/ResidualQuantizer.cpp +448 -0
- data/vendor/faiss/faiss/impl/ResidualQuantizer.h +130 -0
- data/vendor/faiss/faiss/impl/ResultHandler.h +96 -132
- data/vendor/faiss/faiss/impl/ScalarQuantizer.cpp +648 -701
- data/vendor/faiss/faiss/impl/ScalarQuantizer.h +48 -46
- data/vendor/faiss/faiss/impl/ThreadedIndex-inl.h +129 -131
- data/vendor/faiss/faiss/impl/ThreadedIndex.h +61 -55
- data/vendor/faiss/faiss/impl/index_read.cpp +547 -479
- data/vendor/faiss/faiss/impl/index_write.cpp +497 -407
- data/vendor/faiss/faiss/impl/io.cpp +75 -94
- data/vendor/faiss/faiss/impl/io.h +31 -41
- data/vendor/faiss/faiss/impl/io_macros.h +40 -29
- data/vendor/faiss/faiss/impl/lattice_Zn.cpp +137 -186
- data/vendor/faiss/faiss/impl/lattice_Zn.h +40 -51
- data/vendor/faiss/faiss/impl/platform_macros.h +29 -8
- data/vendor/faiss/faiss/impl/pq4_fast_scan.cpp +77 -124
- data/vendor/faiss/faiss/impl/pq4_fast_scan.h +39 -48
- data/vendor/faiss/faiss/impl/pq4_fast_scan_search_1.cpp +41 -52
- data/vendor/faiss/faiss/impl/pq4_fast_scan_search_qbs.cpp +80 -117
- data/vendor/faiss/faiss/impl/simd_result_handlers.h +109 -137
- data/vendor/faiss/faiss/index_factory.cpp +269 -218
- data/vendor/faiss/faiss/index_factory.h +6 -7
- data/vendor/faiss/faiss/index_io.h +23 -26
- data/vendor/faiss/faiss/invlists/BlockInvertedLists.cpp +67 -75
- data/vendor/faiss/faiss/invlists/BlockInvertedLists.h +22 -24
- data/vendor/faiss/faiss/invlists/DirectMap.cpp +96 -112
- data/vendor/faiss/faiss/invlists/DirectMap.h +29 -33
- data/vendor/faiss/faiss/invlists/InvertedLists.cpp +307 -364
- data/vendor/faiss/faiss/invlists/InvertedLists.h +151 -151
- data/vendor/faiss/faiss/invlists/InvertedListsIOHook.cpp +29 -34
- data/vendor/faiss/faiss/invlists/InvertedListsIOHook.h +17 -18
- data/vendor/faiss/faiss/invlists/OnDiskInvertedLists.cpp +257 -293
- data/vendor/faiss/faiss/invlists/OnDiskInvertedLists.h +50 -45
- data/vendor/faiss/faiss/python/python_callbacks.cpp +23 -26
- data/vendor/faiss/faiss/python/python_callbacks.h +9 -16
- data/vendor/faiss/faiss/utils/AlignedTable.h +79 -44
- data/vendor/faiss/faiss/utils/Heap.cpp +40 -48
- data/vendor/faiss/faiss/utils/Heap.h +186 -209
- data/vendor/faiss/faiss/utils/WorkerThread.cpp +67 -76
- data/vendor/faiss/faiss/utils/WorkerThread.h +32 -33
- data/vendor/faiss/faiss/utils/distances.cpp +301 -310
- data/vendor/faiss/faiss/utils/distances.h +133 -118
- data/vendor/faiss/faiss/utils/distances_simd.cpp +456 -516
- data/vendor/faiss/faiss/utils/extra_distances-inl.h +117 -0
- data/vendor/faiss/faiss/utils/extra_distances.cpp +113 -232
- data/vendor/faiss/faiss/utils/extra_distances.h +30 -29
- data/vendor/faiss/faiss/utils/hamming-inl.h +260 -209
- data/vendor/faiss/faiss/utils/hamming.cpp +375 -469
- data/vendor/faiss/faiss/utils/hamming.h +62 -85
- data/vendor/faiss/faiss/utils/ordered_key_value.h +16 -18
- data/vendor/faiss/faiss/utils/partitioning.cpp +393 -318
- data/vendor/faiss/faiss/utils/partitioning.h +26 -21
- data/vendor/faiss/faiss/utils/quantize_lut.cpp +78 -66
- data/vendor/faiss/faiss/utils/quantize_lut.h +22 -20
- data/vendor/faiss/faiss/utils/random.cpp +39 -63
- data/vendor/faiss/faiss/utils/random.h +13 -16
- data/vendor/faiss/faiss/utils/simdlib.h +4 -2
- data/vendor/faiss/faiss/utils/simdlib_avx2.h +88 -85
- data/vendor/faiss/faiss/utils/simdlib_emulated.h +226 -165
- data/vendor/faiss/faiss/utils/simdlib_neon.h +832 -0
- data/vendor/faiss/faiss/utils/utils.cpp +304 -287
- data/vendor/faiss/faiss/utils/utils.h +53 -48
- metadata +20 -2
@@ -5,8 +5,6 @@
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* LICENSE file in the root directory of this source tree.
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// -*- c++ -*-
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#pragma once
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#include <faiss/Index.h>
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/** Build and index with the sequence of processing steps described in
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Index
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Index* index_factory(
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const char* description,
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MetricType metric = METRIC_L2);
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IndexBinary* index_binary_factory(int d, const char* description);
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} // namespace faiss
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#ifndef FAISS_INDEX_IO_H
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#define FAISS_INDEX_IO_H
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#include <typeinfo>
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struct InvertedLists;
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void write_index
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void write_index
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void write_index
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void write_index(const Index* idx, const char* fname);
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void write_index(const Index* idx, FILE* f);
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void write_index(const Index* idx, IOWriter* writer);
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void write_index_binary
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void write_index_binary
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void write_index_binary(const IndexBinary* idx, const char* fname);
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void write_index_binary(const IndexBinary* idx, FILE* f);
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void write_index_binary(const IndexBinary* idx, IOWriter* writer);
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const int IO_FLAG_ONDISK_SAME_DIR = 4;
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// try to memmap data (useful to load an ArrayInvertedLists as an
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// OnDiskInvertedLists)
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Index* read_index(const char* fname, int io_flags = 0);
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Index* read_index(FILE* f, int io_flags = 0);
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Index* read_index(IOReader* reader, int io_flags = 0);
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IndexBinary* read_index_binary(const char* fname, int io_flags = 0);
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IndexBinary* read_index_binary(FILE* f, int io_flags = 0);
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IndexBinary* read_index_binary(IOReader* reader, int io_flags = 0);
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IndexBinary *read_index_binary (IOReader *reader, int io_flags = 0);
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void write_VectorTransform(const VectorTransform* vt, const char* fname);
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VectorTransform* read_VectorTransform(const char* fname);
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ProductQuantizer* read_ProductQuantizer(const char* fname);
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ProductQuantizer* read_ProductQuantizer(IOReader* reader);
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ProductQuantizer
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void write_ProductQuantizer (const ProductQuantizer*pq, const char *fname);
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void write_ProductQuantizer (const ProductQuantizer*pq, IOWriter *f);
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void write_InvertedLists (const InvertedLists *ils, IOWriter *f);
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InvertedLists *read_InvertedLists (IOReader *reader, int io_flags = 0);
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void write_ProductQuantizer(const ProductQuantizer* pq, const char* fname);
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void write_ProductQuantizer(const ProductQuantizer* pq, IOWriter* f);
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void write_InvertedLists(const InvertedLists* ils, IOWriter* f);
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InvertedLists* read_InvertedLists(IOReader* reader, int io_flags = 0);
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#include <faiss/impl/io_macros.h>
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namespace faiss {
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BlockInvertedLists::BlockInvertedLists(
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size_t n_per_block,
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size_t block_size)
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: InvertedLists(nlist, InvertedLists::INVALID_CODE_SIZE),
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n_per_block(n_per_block),
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block_size(block_size) {
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ids.resize(nlist);
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codes.resize(nlist);
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{
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BlockInvertedLists::BlockInvertedLists()
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n_per_block(0),
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block_size(0) {}
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const uint8_t* code) {
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return 0;
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+
FAISS_THROW_IF_NOT(list_no < nlist);
|
41
|
+
size_t o = ids[list_no].size();
|
42
|
+
FAISS_THROW_IF_NOT(
|
43
|
+
o == 0); // not clear how we should handle subsequent adds
|
44
|
+
ids[list_no].resize(o + n_entry);
|
45
|
+
memcpy(&ids[list_no][o], ids_in, sizeof(ids_in[0]) * n_entry);
|
44
46
|
|
45
47
|
// copy whole blocks
|
46
48
|
size_t n_block = (n_entry + n_per_block - 1) / n_per_block;
|
47
|
-
codes
|
48
|
-
memcpy
|
49
|
+
codes[list_no].resize(n_block * block_size);
|
50
|
+
memcpy(&codes[list_no][o * code_size], code, n_block * block_size);
|
49
51
|
return o;
|
50
52
|
}
|
51
53
|
|
52
|
-
size_t BlockInvertedLists::list_size(size_t list_no) const
|
53
|
-
|
54
|
-
assert (list_no < nlist);
|
54
|
+
size_t BlockInvertedLists::list_size(size_t list_no) const {
|
55
|
+
assert(list_no < nlist);
|
55
56
|
return ids[list_no].size();
|
56
57
|
}
|
57
58
|
|
58
|
-
const uint8_t
|
59
|
-
|
60
|
-
assert (list_no < nlist);
|
59
|
+
const uint8_t* BlockInvertedLists::get_codes(size_t list_no) const {
|
60
|
+
assert(list_no < nlist);
|
61
61
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return codes[list_no].get();
|
62
62
|
}
|
63
63
|
|
64
|
-
const InvertedLists::idx_t
|
65
|
-
|
66
|
-
assert (list_no < nlist);
|
64
|
+
const InvertedLists::idx_t* BlockInvertedLists::get_ids(size_t list_no) const {
|
65
|
+
assert(list_no < nlist);
|
67
66
|
return ids[list_no].data();
|
68
67
|
}
|
69
68
|
|
70
|
-
void BlockInvertedLists::resize
|
71
|
-
|
72
|
-
ids[list_no].resize (new_size);
|
69
|
+
void BlockInvertedLists::resize(size_t list_no, size_t new_size) {
|
70
|
+
ids[list_no].resize(new_size);
|
73
71
|
size_t prev_nbytes = codes[list_no].size();
|
74
72
|
size_t n_block = (new_size + n_per_block - 1) / n_per_block;
|
75
73
|
size_t new_nbytes = n_block * block_size;
|
76
|
-
codes[list_no].resize
|
74
|
+
codes[list_no].resize(new_nbytes);
|
77
75
|
if (prev_nbytes < new_nbytes) {
|
78
76
|
// set new elements to 0
|
79
|
-
memset(
|
80
|
-
|
81
|
-
|
82
|
-
);
|
77
|
+
memset(codes[list_no].data() + prev_nbytes,
|
78
|
+
0,
|
79
|
+
new_nbytes - prev_nbytes);
|
83
80
|
}
|
84
81
|
}
|
85
82
|
|
86
|
-
void BlockInvertedLists::update_entries
|
87
|
-
|
88
|
-
|
89
|
-
|
83
|
+
void BlockInvertedLists::update_entries(
|
84
|
+
size_t,
|
85
|
+
size_t,
|
86
|
+
size_t,
|
87
|
+
const idx_t*,
|
88
|
+
const uint8_t*) {
|
90
89
|
FAISS_THROW_MSG("not impemented");
|
91
90
|
/*
|
92
91
|
assert (list_no < nlist);
|
@@ -96,29 +95,25 @@ void BlockInvertedLists::update_entries (
|
|
96
95
|
*/
|
97
96
|
}
|
98
97
|
|
99
|
-
|
100
|
-
BlockInvertedLists::~BlockInvertedLists ()
|
101
|
-
{}
|
98
|
+
BlockInvertedLists::~BlockInvertedLists() {}
|
102
99
|
|
103
100
|
/**************************************************
|
104
101
|
* IO hook implementation
|
105
102
|
**************************************************/
|
106
103
|
|
107
|
-
BlockInvertedListsIOHook::BlockInvertedListsIOHook()
|
108
|
-
|
109
|
-
{}
|
110
|
-
|
104
|
+
BlockInvertedListsIOHook::BlockInvertedListsIOHook()
|
105
|
+
: InvertedListsIOHook("ilbl", typeid(BlockInvertedLists).name()) {}
|
111
106
|
|
112
|
-
void BlockInvertedListsIOHook::write(const InvertedLists
|
113
|
-
{
|
114
|
-
uint32_t h = fourcc
|
115
|
-
WRITE1
|
116
|
-
const BlockInvertedLists
|
117
|
-
|
118
|
-
WRITE1
|
119
|
-
WRITE1
|
120
|
-
WRITE1
|
121
|
-
WRITE1
|
107
|
+
void BlockInvertedListsIOHook::write(const InvertedLists* ils_in, IOWriter* f)
|
108
|
+
const {
|
109
|
+
uint32_t h = fourcc("ilbl");
|
110
|
+
WRITE1(h);
|
111
|
+
const BlockInvertedLists* il =
|
112
|
+
dynamic_cast<const BlockInvertedLists*>(ils_in);
|
113
|
+
WRITE1(il->nlist);
|
114
|
+
WRITE1(il->code_size);
|
115
|
+
WRITE1(il->n_per_block);
|
116
|
+
WRITE1(il->block_size);
|
122
117
|
|
123
118
|
for (size_t i = 0; i < il->nlist; i++) {
|
124
119
|
WRITEVECTOR(il->ids[i]);
|
@@ -126,13 +121,13 @@ void BlockInvertedListsIOHook::write(const InvertedLists *ils_in, IOWriter *f) c
|
|
126
121
|
}
|
127
122
|
}
|
128
123
|
|
129
|
-
InvertedLists
|
130
|
-
{
|
131
|
-
BlockInvertedLists
|
132
|
-
READ1
|
133
|
-
READ1
|
134
|
-
READ1
|
135
|
-
READ1
|
124
|
+
InvertedLists* BlockInvertedListsIOHook::read(IOReader* f, int /* io_flags */)
|
125
|
+
const {
|
126
|
+
BlockInvertedLists* il = new BlockInvertedLists();
|
127
|
+
READ1(il->nlist);
|
128
|
+
READ1(il->code_size);
|
129
|
+
READ1(il->n_per_block);
|
130
|
+
READ1(il->block_size);
|
136
131
|
|
137
132
|
il->ids.resize(il->nlist);
|
138
133
|
il->codes.resize(il->nlist);
|
@@ -145,7 +140,4 @@ InvertedLists * BlockInvertedListsIOHook::read(IOReader *f, int /* io_flags */)
|
|
145
140
|
return il;
|
146
141
|
}
|
147
142
|
|
148
|
-
|
149
|
-
|
150
|
-
|
151
143
|
} // namespace faiss
|
@@ -5,13 +5,12 @@
|
|
5
5
|
* LICENSE file in the root directory of this source tree.
|
6
6
|
*/
|
7
7
|
|
8
|
-
|
9
8
|
#pragma once
|
10
9
|
|
10
|
+
#include <faiss/index_io.h>
|
11
11
|
#include <faiss/invlists/InvertedLists.h>
|
12
12
|
#include <faiss/invlists/InvertedListsIOHook.h>
|
13
13
|
#include <faiss/utils/AlignedTable.h>
|
14
|
-
#include <faiss/index_io.h>
|
15
14
|
|
16
15
|
namespace faiss {
|
17
16
|
|
@@ -28,49 +27,48 @@ namespace faiss {
|
|
28
27
|
* The writing functions add_entries and update_entries operate on block-aligned
|
29
28
|
* data.
|
30
29
|
*/
|
31
|
-
struct BlockInvertedLists: InvertedLists {
|
32
|
-
|
33
|
-
size_t
|
34
|
-
size_t block_size; // nb bytes per block
|
30
|
+
struct BlockInvertedLists : InvertedLists {
|
31
|
+
size_t n_per_block; // nb of vectors stored per block
|
32
|
+
size_t block_size; // nb bytes per block
|
35
33
|
|
36
34
|
std::vector<AlignedTable<uint8_t>> codes;
|
37
35
|
std::vector<std::vector<idx_t>> ids;
|
38
36
|
|
39
|
-
|
40
|
-
BlockInvertedLists (
|
41
|
-
size_t nlist, size_t vec_per_block,
|
42
|
-
size_t block_size
|
43
|
-
);
|
37
|
+
BlockInvertedLists(size_t nlist, size_t vec_per_block, size_t block_size);
|
44
38
|
|
45
39
|
BlockInvertedLists();
|
46
40
|
|
47
41
|
size_t list_size(size_t list_no) const override;
|
48
|
-
const uint8_t
|
49
|
-
const idx_t
|
42
|
+
const uint8_t* get_codes(size_t list_no) const override;
|
43
|
+
const idx_t* get_ids(size_t list_no) const override;
|
50
44
|
|
51
45
|
// works only on empty BlockInvertedLists
|
52
46
|
// the codes should be of size ceil(n_entry / n_per_block) * block_size
|
53
47
|
// and padded with 0s
|
54
|
-
size_t add_entries
|
55
|
-
|
56
|
-
|
48
|
+
size_t add_entries(
|
49
|
+
size_t list_no,
|
50
|
+
size_t n_entry,
|
51
|
+
const idx_t* ids,
|
52
|
+
const uint8_t* code) override;
|
57
53
|
|
58
54
|
/// not implemented
|
59
|
-
void update_entries
|
60
|
-
|
55
|
+
void update_entries(
|
56
|
+
size_t list_no,
|
57
|
+
size_t offset,
|
58
|
+
size_t n_entry,
|
59
|
+
const idx_t* ids,
|
60
|
+
const uint8_t* code) override;
|
61
61
|
|
62
62
|
// also pads new data with 0s
|
63
|
-
void resize
|
64
|
-
|
65
|
-
~BlockInvertedLists () override;
|
63
|
+
void resize(size_t list_no, size_t new_size) override;
|
66
64
|
|
65
|
+
~BlockInvertedLists() override;
|
67
66
|
};
|
68
67
|
|
69
68
|
struct BlockInvertedListsIOHook : InvertedListsIOHook {
|
70
69
|
BlockInvertedListsIOHook();
|
71
|
-
void write(const InvertedLists
|
72
|
-
InvertedLists
|
70
|
+
void write(const InvertedLists* ils, IOWriter* f) const override;
|
71
|
+
InvertedLists* read(IOReader* f, int io_flags) const override;
|
73
72
|
};
|
74
73
|
|
75
|
-
|
76
74
|
} // namespace faiss
|
@@ -9,142 +9,130 @@
|
|
9
9
|
|
10
10
|
#include <faiss/invlists/DirectMap.h>
|
11
11
|
|
12
|
-
#include <cstdio>
|
13
12
|
#include <cassert>
|
13
|
+
#include <cstdio>
|
14
14
|
|
15
|
-
#include <faiss/impl/FaissAssert.h>
|
16
15
|
#include <faiss/impl/AuxIndexStructures.h>
|
16
|
+
#include <faiss/impl/FaissAssert.h>
|
17
17
|
|
18
18
|
namespace faiss {
|
19
19
|
|
20
|
-
DirectMap::DirectMap(): type(NoMap)
|
21
|
-
{}
|
20
|
+
DirectMap::DirectMap() : type(NoMap) {}
|
22
21
|
|
23
|
-
void DirectMap::set_type
|
24
|
-
|
25
|
-
|
26
|
-
|
22
|
+
void DirectMap::set_type(
|
23
|
+
Type new_type,
|
24
|
+
const InvertedLists* invlists,
|
25
|
+
size_t ntotal) {
|
26
|
+
FAISS_THROW_IF_NOT(
|
27
|
+
new_type == NoMap || new_type == Array || new_type == Hashtable);
|
27
28
|
|
28
29
|
if (new_type == type) {
|
29
30
|
// nothing to do
|
30
31
|
return;
|
31
32
|
}
|
32
33
|
|
33
|
-
array.clear
|
34
|
-
hashtable.clear
|
34
|
+
array.clear();
|
35
|
+
hashtable.clear();
|
35
36
|
type = new_type;
|
36
37
|
|
37
38
|
if (new_type == NoMap) {
|
38
39
|
return;
|
39
40
|
} else if (new_type == Array) {
|
40
|
-
array.resize
|
41
|
+
array.resize(ntotal, -1);
|
41
42
|
} else if (new_type == Hashtable) {
|
42
|
-
hashtable.reserve
|
43
|
+
hashtable.reserve(ntotal);
|
43
44
|
}
|
44
45
|
|
45
46
|
for (size_t key = 0; key < invlists->nlist; key++) {
|
46
|
-
size_t list_size = invlists->list_size
|
47
|
-
InvertedLists::ScopedIds idlist
|
47
|
+
size_t list_size = invlists->list_size(key);
|
48
|
+
InvertedLists::ScopedIds idlist(invlists, key);
|
48
49
|
|
49
50
|
if (new_type == Array) {
|
50
51
|
for (long ofs = 0; ofs < list_size; ofs++) {
|
51
|
-
FAISS_THROW_IF_NOT_MSG
|
52
|
-
|
53
|
-
|
54
|
-
array
|
52
|
+
FAISS_THROW_IF_NOT_MSG(
|
53
|
+
0 <= idlist[ofs] && idlist[ofs] < ntotal,
|
54
|
+
"direct map supported only for seuquential ids");
|
55
|
+
array[idlist[ofs]] = lo_build(key, ofs);
|
55
56
|
}
|
56
57
|
} else if (new_type == Hashtable) {
|
57
58
|
for (long ofs = 0; ofs < list_size; ofs++) {
|
58
|
-
hashtable
|
59
|
+
hashtable[idlist[ofs]] = lo_build(key, ofs);
|
59
60
|
}
|
60
61
|
}
|
61
62
|
}
|
62
63
|
}
|
63
64
|
|
64
|
-
void DirectMap::clear()
|
65
|
-
|
66
|
-
|
67
|
-
hashtable.clear ();
|
65
|
+
void DirectMap::clear() {
|
66
|
+
array.clear();
|
67
|
+
hashtable.clear();
|
68
68
|
}
|
69
69
|
|
70
|
-
|
71
|
-
DirectMap::idx_t DirectMap::get (idx_t key) const
|
72
|
-
{
|
70
|
+
DirectMap::idx_t DirectMap::get(idx_t key) const {
|
73
71
|
if (type == Array) {
|
74
|
-
FAISS_THROW_IF_NOT_MSG (
|
75
|
-
key >= 0 && key < array.size(), "invalid key"
|
76
|
-
);
|
72
|
+
FAISS_THROW_IF_NOT_MSG(key >= 0 && key < array.size(), "invalid key");
|
77
73
|
idx_t lo = array[key];
|
78
74
|
FAISS_THROW_IF_NOT_MSG(lo >= 0, "-1 entry in direct_map");
|
79
75
|
return lo;
|
80
76
|
} else if (type == Hashtable) {
|
81
|
-
auto res = hashtable.find
|
82
|
-
FAISS_THROW_IF_NOT_MSG
|
77
|
+
auto res = hashtable.find(key);
|
78
|
+
FAISS_THROW_IF_NOT_MSG(res != hashtable.end(), "key not found");
|
83
79
|
return res->second;
|
84
80
|
} else {
|
85
|
-
FAISS_THROW_MSG
|
81
|
+
FAISS_THROW_MSG("direct map not initialized");
|
86
82
|
}
|
87
83
|
}
|
88
84
|
|
89
|
-
|
90
|
-
|
91
|
-
|
92
|
-
{
|
93
|
-
if (type == NoMap) return;
|
85
|
+
void DirectMap::add_single_id(idx_t id, idx_t list_no, size_t offset) {
|
86
|
+
if (type == NoMap)
|
87
|
+
return;
|
94
88
|
|
95
89
|
if (type == Array) {
|
96
|
-
assert
|
90
|
+
assert(id == array.size());
|
97
91
|
if (list_no >= 0) {
|
98
|
-
array.push_back
|
92
|
+
array.push_back(lo_build(list_no, offset));
|
99
93
|
} else {
|
100
|
-
array.push_back
|
94
|
+
array.push_back(-1);
|
101
95
|
}
|
102
96
|
} else if (type == Hashtable) {
|
103
97
|
if (list_no >= 0) {
|
104
|
-
hashtable[id] = lo_build
|
98
|
+
hashtable[id] = lo_build(list_no, offset);
|
105
99
|
}
|
106
100
|
}
|
107
|
-
|
108
101
|
}
|
109
102
|
|
110
|
-
void DirectMap::check_can_add
|
103
|
+
void DirectMap::check_can_add(const idx_t* ids) {
|
111
104
|
if (type == Array && ids) {
|
112
|
-
FAISS_THROW_MSG
|
105
|
+
FAISS_THROW_MSG("cannot have array direct map and add with ids");
|
113
106
|
}
|
114
107
|
}
|
115
108
|
|
116
109
|
/********************* DirectMapAdd implementation */
|
117
110
|
|
118
|
-
|
119
|
-
|
120
|
-
|
121
|
-
|
122
|
-
if (type == DirectMap::Array) {
|
123
|
-
FAISS_THROW_IF_NOT (xids == nullptr);
|
111
|
+
DirectMapAdd::DirectMapAdd(DirectMap& direct_map, size_t n, const idx_t* xids)
|
112
|
+
: direct_map(direct_map), type(direct_map.type), n(n), xids(xids) {
|
113
|
+
if (type == DirectMap::Array) {
|
114
|
+
FAISS_THROW_IF_NOT(xids == nullptr);
|
124
115
|
ntotal = direct_map.array.size();
|
125
|
-
direct_map.array.resize
|
116
|
+
direct_map.array.resize(ntotal + n, -1);
|
126
117
|
} else if (type == DirectMap::Hashtable) {
|
127
118
|
// can't parallel update hashtable so use temp array
|
128
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-
all_ofs.resize
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119
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+
all_ofs.resize(n, -1);
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129
120
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}
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130
121
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}
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131
122
|
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132
|
-
|
133
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-
void DirectMapAdd::add (size_t i, idx_t list_no, size_t ofs)
|
134
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-
{
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123
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+
void DirectMapAdd::add(size_t i, idx_t list_no, size_t ofs) {
|
135
124
|
if (type == DirectMap::Array) {
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136
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-
direct_map.array
|
125
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+
direct_map.array[ntotal + i] = lo_build(list_no, ofs);
|
137
126
|
} else if (type == DirectMap::Hashtable) {
|
138
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-
all_ofs
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127
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+
all_ofs[i] = lo_build(list_no, ofs);
|
139
128
|
}
|
140
129
|
}
|
141
130
|
|
142
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-
DirectMapAdd::~DirectMapAdd
|
143
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-
{
|
131
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+
DirectMapAdd::~DirectMapAdd() {
|
144
132
|
if (type == DirectMap::Hashtable) {
|
145
133
|
for (int i = 0; i < n; i++) {
|
146
134
|
idx_t id = xids ? xids[i] : ntotal + i;
|
147
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-
direct_map.hashtable
|
135
|
+
direct_map.hashtable[id] = all_ofs[i];
|
148
136
|
}
|
149
137
|
}
|
150
138
|
}
|
@@ -154,9 +142,7 @@ DirectMapAdd::~DirectMapAdd ()
|
|
154
142
|
using ScopedCodes = InvertedLists::ScopedCodes;
|
155
143
|
using ScopedIds = InvertedLists::ScopedIds;
|
156
144
|
|
157
|
-
|
158
|
-
size_t DirectMap::remove_ids(const IDSelector& sel, InvertedLists *invlists)
|
159
|
-
{
|
145
|
+
size_t DirectMap::remove_ids(const IDSelector& sel, InvertedLists* invlists) {
|
160
146
|
size_t nlist = invlists->nlist;
|
161
147
|
std::vector<idx_t> toremove(nlist);
|
162
148
|
|
@@ -166,16 +152,16 @@ size_t DirectMap::remove_ids(const IDSelector& sel, InvertedLists *invlists)
|
|
166
152
|
// exhaustive scan of IVF
|
167
153
|
#pragma omp parallel for
|
168
154
|
for (idx_t i = 0; i < nlist; i++) {
|
169
|
-
idx_t l0 = invlists->list_size
|
170
|
-
ScopedIds idsi
|
155
|
+
idx_t l0 = invlists->list_size(i), l = l0, j = 0;
|
156
|
+
ScopedIds idsi(invlists, i);
|
171
157
|
while (j < l) {
|
172
|
-
if (sel.is_member
|
158
|
+
if (sel.is_member(idsi[j])) {
|
173
159
|
l--;
|
174
|
-
invlists->update_entry
|
175
|
-
|
176
|
-
|
177
|
-
|
178
|
-
|
160
|
+
invlists->update_entry(
|
161
|
+
i,
|
162
|
+
j,
|
163
|
+
invlists->get_single_id(i, l),
|
164
|
+
ScopedCodes(invlists, i, l).get());
|
179
165
|
} else {
|
180
166
|
j++;
|
181
167
|
}
|
@@ -191,30 +177,28 @@ size_t DirectMap::remove_ids(const IDSelector& sel, InvertedLists *invlists)
|
|
191
177
|
}
|
192
178
|
}
|
193
179
|
} else if (type == Hashtable) {
|
194
|
-
const IDSelectorArray
|
195
|
-
|
196
|
-
FAISS_THROW_IF_NOT_MSG
|
197
|
-
|
198
|
-
"remove with hashtable works only with IDSelectorArray"
|
199
|
-
);
|
180
|
+
const IDSelectorArray* sela =
|
181
|
+
dynamic_cast<const IDSelectorArray*>(&sel);
|
182
|
+
FAISS_THROW_IF_NOT_MSG(
|
183
|
+
sela, "remove with hashtable works only with IDSelectorArray");
|
200
184
|
|
201
185
|
for (idx_t i = 0; i < sela->n; i++) {
|
202
186
|
idx_t id = sela->ids[i];
|
203
|
-
auto res = hashtable.find
|
187
|
+
auto res = hashtable.find(id);
|
204
188
|
if (res != hashtable.end()) {
|
205
|
-
size_t list_no = lo_listno
|
206
|
-
size_t offset = lo_offset
|
207
|
-
idx_t last = invlists->list_size
|
208
|
-
hashtable.erase
|
189
|
+
size_t list_no = lo_listno(res->second);
|
190
|
+
size_t offset = lo_offset(res->second);
|
191
|
+
idx_t last = invlists->list_size(list_no) - 1;
|
192
|
+
hashtable.erase(res);
|
209
193
|
if (offset < last) {
|
210
|
-
idx_t last_id = invlists->get_single_id
|
211
|
-
invlists->update_entry
|
212
|
-
|
213
|
-
|
214
|
-
|
215
|
-
|
194
|
+
idx_t last_id = invlists->get_single_id(list_no, last);
|
195
|
+
invlists->update_entry(
|
196
|
+
list_no,
|
197
|
+
offset,
|
198
|
+
last_id,
|
199
|
+
ScopedCodes(invlists, list_no, last).get());
|
216
200
|
// update hash entry for last element
|
217
|
-
hashtable
|
201
|
+
hashtable[last_id] = list_no << 32 | offset;
|
218
202
|
}
|
219
203
|
invlists->resize(list_no, last);
|
220
204
|
nremove++;
|
@@ -227,41 +211,41 @@ size_t DirectMap::remove_ids(const IDSelector& sel, InvertedLists *invlists)
|
|
227
211
|
return nremove;
|
228
212
|
}
|
229
213
|
|
230
|
-
void DirectMap::update_codes
|
231
|
-
|
232
|
-
|
233
|
-
|
234
|
-
|
235
|
-
|
214
|
+
void DirectMap::update_codes(
|
215
|
+
InvertedLists* invlists,
|
216
|
+
int n,
|
217
|
+
const idx_t* ids,
|
218
|
+
const idx_t* assign,
|
219
|
+
const uint8_t* codes) {
|
220
|
+
FAISS_THROW_IF_NOT(type == Array);
|
236
221
|
|
237
222
|
size_t code_size = invlists->code_size;
|
238
223
|
|
239
224
|
for (size_t i = 0; i < n; i++) {
|
240
225
|
idx_t id = ids[i];
|
241
|
-
FAISS_THROW_IF_NOT_MSG
|
242
|
-
|
226
|
+
FAISS_THROW_IF_NOT_MSG(
|
227
|
+
0 <= id && id < array.size(), "id to update out of range");
|
243
228
|
{ // remove old one
|
244
|
-
idx_t dm = array
|
245
|
-
int64_t ofs = lo_offset
|
246
|
-
int64_t il = lo_listno
|
247
|
-
size_t l = invlists->list_size
|
229
|
+
idx_t dm = array[id];
|
230
|
+
int64_t ofs = lo_offset(dm);
|
231
|
+
int64_t il = lo_listno(dm);
|
232
|
+
size_t l = invlists->list_size(il);
|
248
233
|
if (ofs != l - 1) { // move l - 1 to ofs
|
249
|
-
int64_t id2 = invlists->get_single_id
|
250
|
-
array[id2] = lo_build
|
251
|
-
invlists->update_entry
|
252
|
-
|
234
|
+
int64_t id2 = invlists->get_single_id(il, l - 1);
|
235
|
+
array[id2] = lo_build(il, ofs);
|
236
|
+
invlists->update_entry(
|
237
|
+
il, ofs, id2, invlists->get_single_code(il, l - 1));
|
253
238
|
}
|
254
|
-
invlists->resize
|
239
|
+
invlists->resize(il, l - 1);
|
255
240
|
}
|
256
241
|
{ // insert new one
|
257
242
|
int64_t il = assign[i];
|
258
|
-
size_t l = invlists->list_size
|
259
|
-
idx_t dm = lo_build
|
260
|
-
array
|
261
|
-
invlists->add_entry
|
243
|
+
size_t l = invlists->list_size(il);
|
244
|
+
idx_t dm = lo_build(il, l);
|
245
|
+
array[id] = dm;
|
246
|
+
invlists->add_entry(il, id, codes + i * code_size);
|
262
247
|
}
|
263
248
|
}
|
264
249
|
}
|
265
250
|
|
266
|
-
|
267
|
-
}
|
251
|
+
} // namespace faiss
|