evosynth 0.1.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (390) hide show
  1. data/INSTALL +74 -0
  2. data/LICENSE +22 -0
  3. data/README +57 -0
  4. data/Rakefile +132 -0
  5. data/TODO +88 -0
  6. data/docs/FEATURES +111 -0
  7. data/docs/rdoc/classes/EvoSynth.html +2643 -0
  8. data/docs/rdoc/classes/EvoSynth/Adjustments.html +119 -0
  9. data/docs/rdoc/classes/EvoSynth/Adjustments/AdaptiveAdjustment.html +264 -0
  10. data/docs/rdoc/classes/EvoSynth/Adjustments/PredifinedAdjustment.html +235 -0
  11. data/docs/rdoc/classes/EvoSynth/ArrayGenome.html +313 -0
  12. data/docs/rdoc/classes/EvoSynth/BinaryGenome.html +518 -0
  13. data/docs/rdoc/classes/EvoSynth/Decoder.html +286 -0
  14. data/docs/rdoc/classes/EvoSynth/Evaluator.html +466 -0
  15. data/docs/rdoc/classes/EvoSynth/Evolvers.html +469 -0
  16. data/docs/rdoc/classes/EvoSynth/Evolvers/AdaptiveES.html +448 -0
  17. data/docs/rdoc/classes/EvoSynth/Evolvers/BalancedCoevolutionary.html +439 -0
  18. data/docs/rdoc/classes/EvoSynth/Evolvers/DerandomizedES.html +450 -0
  19. data/docs/rdoc/classes/EvoSynth/Evolvers/Evolver.html +125 -0
  20. data/docs/rdoc/classes/EvoSynth/Evolvers/GeneticAlgorithm.html +467 -0
  21. data/docs/rdoc/classes/EvoSynth/Evolvers/Hillclimber.html +343 -0
  22. data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch.html +422 -0
  23. data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/GreatDelugeAcceptance.html +287 -0
  24. data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/HillclimberAcceptance.html +197 -0
  25. data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/RecordToRecordTravelAcceptance.html +296 -0
  26. data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/SimulatedAnnealingAcceptance.html +286 -0
  27. data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/ThresholdAcceptance.html +287 -0
  28. data/docs/rdoc/classes/EvoSynth/Evolvers/MemeticAlgorithm.html +441 -0
  29. data/docs/rdoc/classes/EvoSynth/Evolvers/PopulationHillclimber.html +375 -0
  30. data/docs/rdoc/classes/EvoSynth/Evolvers/ProfileUsingEvolver.html +205 -0
  31. data/docs/rdoc/classes/EvoSynth/Evolvers/RoundRobinCoevolutionary.html +383 -0
  32. data/docs/rdoc/classes/EvoSynth/Evolvers/RunnableEvolver.html +279 -0
  33. data/docs/rdoc/classes/EvoSynth/Evolvers/RunnableEvolver/Goal.html +193 -0
  34. data/docs/rdoc/classes/EvoSynth/Evolvers/SelfAdaptiveES.html +394 -0
  35. data/docs/rdoc/classes/EvoSynth/Evolvers/SteadyStateGA.html +390 -0
  36. data/docs/rdoc/classes/EvoSynth/GlobalRecombinations.html +119 -0
  37. data/docs/rdoc/classes/EvoSynth/GlobalRecombinations/GlobalArithmeticCrossover.html +204 -0
  38. data/docs/rdoc/classes/EvoSynth/GlobalRecombinations/GlobalUniformCrossover.html +203 -0
  39. data/docs/rdoc/classes/EvoSynth/Individual.html +561 -0
  40. data/docs/rdoc/classes/EvoSynth/MaximizingIndividual.html +266 -0
  41. data/docs/rdoc/classes/EvoSynth/MetaOperators.html +149 -0
  42. data/docs/rdoc/classes/EvoSynth/MetaOperators/ConditionalCombinedOperator.html +278 -0
  43. data/docs/rdoc/classes/EvoSynth/MetaOperators/ProportionalCombinedOperator.html +285 -0
  44. data/docs/rdoc/classes/EvoSynth/MetaOperators/SequentialCombinedOperator.html +290 -0
  45. data/docs/rdoc/classes/EvoSynth/MinimizingIndividual.html +266 -0
  46. data/docs/rdoc/classes/EvoSynth/Mutations.html +251 -0
  47. data/docs/rdoc/classes/EvoSynth/Mutations/BinaryMutation.html +336 -0
  48. data/docs/rdoc/classes/EvoSynth/Mutations/EfficientBinaryMutation.html +345 -0
  49. data/docs/rdoc/classes/EvoSynth/Mutations/ExchangeMutation.html +320 -0
  50. data/docs/rdoc/classes/EvoSynth/Mutations/Functions.html +160 -0
  51. data/docs/rdoc/classes/EvoSynth/Mutations/GaussMutation.html +311 -0
  52. data/docs/rdoc/classes/EvoSynth/Mutations/Identity.html +220 -0
  53. data/docs/rdoc/classes/EvoSynth/Mutations/InversionMutation.html +231 -0
  54. data/docs/rdoc/classes/EvoSynth/Mutations/MixingMutation.html +233 -0
  55. data/docs/rdoc/classes/EvoSynth/Mutations/OneGeneFlipping.html +295 -0
  56. data/docs/rdoc/classes/EvoSynth/Mutations/SelfAdaptiveGaussMutation.html +347 -0
  57. data/docs/rdoc/classes/EvoSynth/Mutations/ShiftingMutation.html +229 -0
  58. data/docs/rdoc/classes/EvoSynth/Mutations/UniformRealMutation.html +264 -0
  59. data/docs/rdoc/classes/EvoSynth/Output.html +212 -0
  60. data/docs/rdoc/classes/EvoSynth/Output/CSVExporter.html +211 -0
  61. data/docs/rdoc/classes/EvoSynth/Output/ConsoleWriter.html +194 -0
  62. data/docs/rdoc/classes/EvoSynth/Output/GnuPlotExporter.html +235 -0
  63. data/docs/rdoc/classes/EvoSynth/Output/GruffExporter.html +219 -0
  64. data/docs/rdoc/classes/EvoSynth/Output/Logger.html +345 -0
  65. data/docs/rdoc/classes/EvoSynth/Population.html +430 -0
  66. data/docs/rdoc/classes/EvoSynth/Problems.html +159 -0
  67. data/docs/rdoc/classes/EvoSynth/Problems/BinaryBenchmarkFuntions.html +258 -0
  68. data/docs/rdoc/classes/EvoSynth/Problems/FloatBenchmarkFuntions.html +406 -0
  69. data/docs/rdoc/classes/EvoSynth/Problems/GraphColouring.html +265 -0
  70. data/docs/rdoc/classes/EvoSynth/Problems/TSP.html +327 -0
  71. data/docs/rdoc/classes/EvoSynth/Profile.html +324 -0
  72. data/docs/rdoc/classes/EvoSynth/Recombinations.html +251 -0
  73. data/docs/rdoc/classes/EvoSynth/Recombinations/ArithmeticCrossover.html +286 -0
  74. data/docs/rdoc/classes/EvoSynth/Recombinations/EdgeRecombination.html +203 -0
  75. data/docs/rdoc/classes/EvoSynth/Recombinations/Identity.html +192 -0
  76. data/docs/rdoc/classes/EvoSynth/Recombinations/KPointCrossover.html +286 -0
  77. data/docs/rdoc/classes/EvoSynth/Recombinations/OnePointCrossover.html +211 -0
  78. data/docs/rdoc/classes/EvoSynth/Recombinations/OrderedRecombination.html +206 -0
  79. data/docs/rdoc/classes/EvoSynth/Recombinations/PartiallyMappedCrossover.html +206 -0
  80. data/docs/rdoc/classes/EvoSynth/Recombinations/UniformCrossover.html +208 -0
  81. data/docs/rdoc/classes/EvoSynth/Selections.html +174 -0
  82. data/docs/rdoc/classes/EvoSynth/Selections/FitnessProportionalSelection.html +206 -0
  83. data/docs/rdoc/classes/EvoSynth/Selections/Identity.html +200 -0
  84. data/docs/rdoc/classes/EvoSynth/Selections/NStageTournamentSelection.html +273 -0
  85. data/docs/rdoc/classes/EvoSynth/Selections/RandomSelection.html +192 -0
  86. data/docs/rdoc/classes/EvoSynth/Selections/RouletteWheelSelection.html +212 -0
  87. data/docs/rdoc/classes/EvoSynth/Selections/SelectBest.html +206 -0
  88. data/docs/rdoc/classes/EvoSynth/Selections/TournamentSelection.html +274 -0
  89. data/docs/rdoc/classes/Examples.html +268 -0
  90. data/docs/rdoc/classes/Examples/Ants.html +198 -0
  91. data/docs/rdoc/classes/Examples/Ants/AntMutation.html +381 -0
  92. data/docs/rdoc/classes/Examples/Ants/Pheromon.html +256 -0
  93. data/docs/rdoc/classes/Examples/CCGAExample.html +305 -0
  94. data/docs/rdoc/classes/Examples/CCGAExample/CCGA2BenchmarkEvaluator.html +165 -0
  95. data/docs/rdoc/classes/Examples/CCGAExample/CCGABenchmarkEvaluator.html +242 -0
  96. data/docs/rdoc/classes/Examples/CCGAExample/CCGAIndividual.html +181 -0
  97. data/docs/rdoc/classes/Examples/CMBExample.html +215 -0
  98. data/docs/rdoc/classes/Examples/CMBExample/CMBEvaluator.html +212 -0
  99. data/docs/rdoc/classes/Examples/EsExample.html +270 -0
  100. data/docs/rdoc/classes/Examples/EsExample/BenchmarkEvaluator.html +162 -0
  101. data/docs/rdoc/classes/Examples/Exporter.html +208 -0
  102. data/docs/rdoc/classes/Examples/Exporter/ExporterEvaluator.html +196 -0
  103. data/docs/rdoc/classes/Examples/GraphColouring.html +199 -0
  104. data/docs/rdoc/classes/Examples/Hacking.html +147 -0
  105. data/docs/rdoc/classes/Examples/Hacking/HackingEvaluator.html +169 -0
  106. data/docs/rdoc/classes/Examples/LocalSearch.html +294 -0
  107. data/docs/rdoc/classes/Examples/LocalSearch/LocalSearchEvaluator.html +198 -0
  108. data/docs/rdoc/classes/Examples/MaxOnes.html +187 -0
  109. data/docs/rdoc/classes/Examples/MaxOnes/MaxOnesEvaluator.html +170 -0
  110. data/docs/rdoc/classes/Examples/Partitionproblem.html +201 -0
  111. data/docs/rdoc/classes/Examples/Partitionproblem/PartitionEvaluator.html +164 -0
  112. data/docs/rdoc/classes/Examples/Partitionproblem/PartitionIndividual.html +334 -0
  113. data/docs/rdoc/classes/Examples/Partitionproblem/PartitionMutation.html +199 -0
  114. data/docs/rdoc/classes/Examples/Partitionproblem/Testdata.html +294 -0
  115. data/docs/rdoc/classes/Examples/SPk.html +139 -0
  116. data/docs/rdoc/classes/Examples/SPk/SPkFitnessEvaluator.html +299 -0
  117. data/docs/rdoc/classes/Examples/TSP.html +187 -0
  118. data/docs/rdoc/created.rid +1 -0
  119. data/docs/rdoc/files/INSTALL.html +253 -0
  120. data/docs/rdoc/files/LICENSE.html +119 -0
  121. data/docs/rdoc/files/README.html +235 -0
  122. data/docs/rdoc/files/docs/FEATURES.html +428 -0
  123. data/docs/rdoc/files/examples/ants_rb.html +133 -0
  124. data/docs/rdoc/files/examples/ccga_example_rb.html +129 -0
  125. data/docs/rdoc/files/examples/cmb_example_rb.html +129 -0
  126. data/docs/rdoc/files/examples/evolution_strategies_rb.html +129 -0
  127. data/docs/rdoc/files/examples/exporter_rb.html +129 -0
  128. data/docs/rdoc/files/examples/graph_colouring_rb.html +129 -0
  129. data/docs/rdoc/files/examples/hacking_rb.html +129 -0
  130. data/docs/rdoc/files/examples/local_search_rb.html +129 -0
  131. data/docs/rdoc/files/examples/max_ones_rb.html +129 -0
  132. data/docs/rdoc/files/examples/partition_rb.html +131 -0
  133. data/docs/rdoc/files/examples/spk_rb.html +129 -0
  134. data/docs/rdoc/files/examples/tsp_rb.html +131 -0
  135. data/docs/rdoc/files/lib/evosynth/core/array_genome_rb.html +119 -0
  136. data/docs/rdoc/files/lib/evosynth/core/binary_genome_rb.html +119 -0
  137. data/docs/rdoc/files/lib/evosynth/core/evaluator_rb.html +129 -0
  138. data/docs/rdoc/files/lib/evosynth/core/individual_rb.html +119 -0
  139. data/docs/rdoc/files/lib/evosynth/core/maximizing_individual_rb.html +119 -0
  140. data/docs/rdoc/files/lib/evosynth/core/minimizing_individual_rb.html +119 -0
  141. data/docs/rdoc/files/lib/evosynth/core/population_rb.html +119 -0
  142. data/docs/rdoc/files/lib/evosynth/core/profile_rb.html +119 -0
  143. data/docs/rdoc/files/lib/evosynth/core/randomizer_rb.html +119 -0
  144. data/docs/rdoc/files/lib/evosynth/core_rb.html +145 -0
  145. data/docs/rdoc/files/lib/evosynth/decoder/binary_to_real_rb.html +119 -0
  146. data/docs/rdoc/files/lib/evosynth/decoder/gray_rb.html +119 -0
  147. data/docs/rdoc/files/lib/evosynth/decoder_rb.html +131 -0
  148. data/docs/rdoc/files/lib/evosynth/evolvers/basic/genetic_algorithm_rb.html +119 -0
  149. data/docs/rdoc/files/lib/evosynth/evolvers/basic/hillclimber_rb.html +119 -0
  150. data/docs/rdoc/files/lib/evosynth/evolvers/basic/memetic_algorithm_rb.html +119 -0
  151. data/docs/rdoc/files/lib/evosynth/evolvers/basic/population_hillclimber_rb.html +119 -0
  152. data/docs/rdoc/files/lib/evosynth/evolvers/basic/steady_state_ga_rb.html +119 -0
  153. data/docs/rdoc/files/lib/evosynth/evolvers/coevolutionary/balanced_coevolutionary_rb.html +119 -0
  154. data/docs/rdoc/files/lib/evosynth/evolvers/coevolutionary/round_robin_coevolutionary_rb.html +119 -0
  155. data/docs/rdoc/files/lib/evosynth/evolvers/elitism_rb.html +119 -0
  156. data/docs/rdoc/files/lib/evosynth/evolvers/evolution_strategies/adaptive_es_rb.html +129 -0
  157. data/docs/rdoc/files/lib/evosynth/evolvers/evolution_strategies/derandomized_es_rb.html +129 -0
  158. data/docs/rdoc/files/lib/evosynth/evolvers/evolution_strategies/selfadaptive_es_rb.html +119 -0
  159. data/docs/rdoc/files/lib/evosynth/evolvers/evolver_rb.html +131 -0
  160. data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_great_deluge_rb.html +119 -0
  161. data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_hillclimber_rb.html +119 -0
  162. data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_record_to_record_rb.html +119 -0
  163. data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_simulated_annealing_rb.html +119 -0
  164. data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_threshold_rb.html +119 -0
  165. data/docs/rdoc/files/lib/evosynth/evolvers/local_search/local_search_rb.html +137 -0
  166. data/docs/rdoc/files/lib/evosynth/evolvers/profile_using_evolver_rb.html +119 -0
  167. data/docs/rdoc/files/lib/evosynth/evolvers/runnable_evolver_rb.html +129 -0
  168. data/docs/rdoc/files/lib/evosynth/evolvers_rb.html +153 -0
  169. data/docs/rdoc/files/lib/evosynth/operators/adjustments/adaptive_adjustment_rb.html +119 -0
  170. data/docs/rdoc/files/lib/evosynth/operators/adjustments/predefined_adjustment_rb.html +119 -0
  171. data/docs/rdoc/files/lib/evosynth/operators/adjustments_rb.html +131 -0
  172. data/docs/rdoc/files/lib/evosynth/operators/global_recombinations/global_arithmetic_crossover_rb.html +119 -0
  173. data/docs/rdoc/files/lib/evosynth/operators/global_recombinations/global_uniform_crossover_rb.html +119 -0
  174. data/docs/rdoc/files/lib/evosynth/operators/global_recombinations_rb.html +131 -0
  175. data/docs/rdoc/files/lib/evosynth/operators/meta_operators/conditional_combined_operator_rb.html +119 -0
  176. data/docs/rdoc/files/lib/evosynth/operators/meta_operators/proportional_combined_operator_rb.html +119 -0
  177. data/docs/rdoc/files/lib/evosynth/operators/meta_operators/sequential_combined_operator_rb.html +119 -0
  178. data/docs/rdoc/files/lib/evosynth/operators/meta_operators_rb.html +133 -0
  179. data/docs/rdoc/files/lib/evosynth/operators/mutations/binary_mutation_rb.html +119 -0
  180. data/docs/rdoc/files/lib/evosynth/operators/mutations/efficient_binary_mutation_rb.html +119 -0
  181. data/docs/rdoc/files/lib/evosynth/operators/mutations/exchange_mutation_rb.html +119 -0
  182. data/docs/rdoc/files/lib/evosynth/operators/mutations/flip_functions_rb.html +119 -0
  183. data/docs/rdoc/files/lib/evosynth/operators/mutations/gauss_mutation_rb.html +119 -0
  184. data/docs/rdoc/files/lib/evosynth/operators/mutations/identity_rb.html +119 -0
  185. data/docs/rdoc/files/lib/evosynth/operators/mutations/inversion_mutation_rb.html +119 -0
  186. data/docs/rdoc/files/lib/evosynth/operators/mutations/mixing_mutation_rb.html +119 -0
  187. data/docs/rdoc/files/lib/evosynth/operators/mutations/one_gene_flipping_rb.html +119 -0
  188. data/docs/rdoc/files/lib/evosynth/operators/mutations/self_adaptive_gauss_mutation_rb.html +119 -0
  189. data/docs/rdoc/files/lib/evosynth/operators/mutations/shifting_mutation_rb.html +119 -0
  190. data/docs/rdoc/files/lib/evosynth/operators/mutations/uniform_real_mutation_rb.html +119 -0
  191. data/docs/rdoc/files/lib/evosynth/operators/mutations_rb.html +151 -0
  192. data/docs/rdoc/files/lib/evosynth/operators/recombinations/arithmetic_crossover_rb.html +119 -0
  193. data/docs/rdoc/files/lib/evosynth/operators/recombinations/edge_recombination_rb.html +129 -0
  194. data/docs/rdoc/files/lib/evosynth/operators/recombinations/identity_rb.html +119 -0
  195. data/docs/rdoc/files/lib/evosynth/operators/recombinations/k_point_crossover_rb.html +119 -0
  196. data/docs/rdoc/files/lib/evosynth/operators/recombinations/one_point_crossover_rb.html +119 -0
  197. data/docs/rdoc/files/lib/evosynth/operators/recombinations/ordered_recombination_rb.html +129 -0
  198. data/docs/rdoc/files/lib/evosynth/operators/recombinations/partially_mapped_crossover_rb.html +129 -0
  199. data/docs/rdoc/files/lib/evosynth/operators/recombinations/uniform_crossover_rb.html +119 -0
  200. data/docs/rdoc/files/lib/evosynth/operators/recombinations_rb.html +143 -0
  201. data/docs/rdoc/files/lib/evosynth/operators/selections/best_selection_rb.html +119 -0
  202. data/docs/rdoc/files/lib/evosynth/operators/selections/fitness_proportional_selection_rb.html +119 -0
  203. data/docs/rdoc/files/lib/evosynth/operators/selections/identity_rb.html +119 -0
  204. data/docs/rdoc/files/lib/evosynth/operators/selections/n_stage_tournament_selection_rb.html +119 -0
  205. data/docs/rdoc/files/lib/evosynth/operators/selections/random_selection_rb.html +119 -0
  206. data/docs/rdoc/files/lib/evosynth/operators/selections/roulette_wheel_selection_rb.html +119 -0
  207. data/docs/rdoc/files/lib/evosynth/operators/selections/tournament_selection_rb.html +119 -0
  208. data/docs/rdoc/files/lib/evosynth/operators/selections_rb.html +141 -0
  209. data/docs/rdoc/files/lib/evosynth/operators_rb.html +139 -0
  210. data/docs/rdoc/files/lib/evosynth/output/console_writer_rb.html +129 -0
  211. data/docs/rdoc/files/lib/evosynth/output/exporter/csv_exporter_rb.html +129 -0
  212. data/docs/rdoc/files/lib/evosynth/output/exporter/gnuplot_exporter_rb.html +131 -0
  213. data/docs/rdoc/files/lib/evosynth/output/exporter/gruff_exporter_rb.html +131 -0
  214. data/docs/rdoc/files/lib/evosynth/output/exporter_rb.html +133 -0
  215. data/docs/rdoc/files/lib/evosynth/output/factory_rb.html +129 -0
  216. data/docs/rdoc/files/lib/evosynth/output/logger_rb.html +119 -0
  217. data/docs/rdoc/files/lib/evosynth/output_rb.html +135 -0
  218. data/docs/rdoc/files/lib/evosynth/problems/binary_benchmark_functions_rb.html +119 -0
  219. data/docs/rdoc/files/lib/evosynth/problems/float_benchmark_functions_rb.html +1630 -0
  220. data/docs/rdoc/files/lib/evosynth/problems/graph_colouring_rb.html +129 -0
  221. data/docs/rdoc/files/lib/evosynth/problems/tsp_rb.html +129 -0
  222. data/docs/rdoc/files/lib/evosynth/problems_rb.html +135 -0
  223. data/docs/rdoc/files/lib/evosynth_rb.html +139 -0
  224. data/docs/rdoc/fr_class_index.html +245 -0
  225. data/docs/rdoc/fr_file_index.html +233 -0
  226. data/docs/rdoc/fr_method_index.html +661 -0
  227. data/docs/rdoc/index.html +21 -0
  228. data/docs/rdoc/rdoc-style.css +299 -0
  229. data/examples/ants.rb +237 -0
  230. data/examples/ccga_example.rb +150 -0
  231. data/examples/cmb_example.rb +117 -0
  232. data/examples/evolution_strategies.rb +84 -0
  233. data/examples/exporter.rb +90 -0
  234. data/examples/graph_colouring.rb +72 -0
  235. data/examples/hacking.rb +62 -0
  236. data/examples/local_search.rb +109 -0
  237. data/examples/max_ones.rb +83 -0
  238. data/examples/partition.rb +172 -0
  239. data/examples/spk.rb +106 -0
  240. data/examples/tsp.rb +83 -0
  241. data/lib/evosynth.rb +32 -0
  242. data/lib/evosynth/core.rb +33 -0
  243. data/lib/evosynth/core/array_genome.rb +77 -0
  244. data/lib/evosynth/core/binary_genome.rb +156 -0
  245. data/lib/evosynth/core/evaluator.rb +109 -0
  246. data/lib/evosynth/core/individual.rb +92 -0
  247. data/lib/evosynth/core/maximizing_individual.rb +71 -0
  248. data/lib/evosynth/core/minimizing_individual.rb +71 -0
  249. data/lib/evosynth/core/population.rb +120 -0
  250. data/lib/evosynth/core/profile.rb +110 -0
  251. data/lib/evosynth/core/randomizer.rb +73 -0
  252. data/lib/evosynth/decoder.rb +33 -0
  253. data/lib/evosynth/decoder/binary_to_real.rb +57 -0
  254. data/lib/evosynth/decoder/gray.rb +54 -0
  255. data/lib/evosynth/evolvers.rb +41 -0
  256. data/lib/evosynth/evolvers/basic/genetic_algorithm.rb +92 -0
  257. data/lib/evosynth/evolvers/basic/hillclimber.rb +64 -0
  258. data/lib/evosynth/evolvers/basic/memetic_algorithm.rb +111 -0
  259. data/lib/evosynth/evolvers/basic/population_hillclimber.rb +69 -0
  260. data/lib/evosynth/evolvers/basic/steady_state_ga.rb +85 -0
  261. data/lib/evosynth/evolvers/coevolutionary/balanced_coevolutionary.rb +125 -0
  262. data/lib/evosynth/evolvers/coevolutionary/round_robin_coevolutionary.rb +87 -0
  263. data/lib/evosynth/evolvers/elitism.rb +108 -0
  264. data/lib/evosynth/evolvers/evolution_strategies/adaptive_es.rb +104 -0
  265. data/lib/evosynth/evolvers/evolution_strategies/derandomized_es.rb +120 -0
  266. data/lib/evosynth/evolvers/evolution_strategies/selfadaptive_es.rb +82 -0
  267. data/lib/evosynth/evolvers/evolver.rb +43 -0
  268. data/lib/evosynth/evolvers/local_search/acceptance_great_deluge.rb +60 -0
  269. data/lib/evosynth/evolvers/local_search/acceptance_hillclimber.rb +47 -0
  270. data/lib/evosynth/evolvers/local_search/acceptance_record_to_record.rb +69 -0
  271. data/lib/evosynth/evolvers/local_search/acceptance_simulated_annealing.rb +59 -0
  272. data/lib/evosynth/evolvers/local_search/acceptance_threshold.rb +60 -0
  273. data/lib/evosynth/evolvers/local_search/local_search.rb +74 -0
  274. data/lib/evosynth/evolvers/profile_using_evolver.rb +77 -0
  275. data/lib/evosynth/evolvers/runnable_evolver.rb +89 -0
  276. data/lib/evosynth/operators.rb +30 -0
  277. data/lib/evosynth/operators/adjustments.rb +26 -0
  278. data/lib/evosynth/operators/adjustments/adaptive_adjustment.rb +55 -0
  279. data/lib/evosynth/operators/adjustments/predefined_adjustment.rb +46 -0
  280. data/lib/evosynth/operators/global_recombinations.rb +26 -0
  281. data/lib/evosynth/operators/global_recombinations/global_arithmetic_crossover.rb +50 -0
  282. data/lib/evosynth/operators/global_recombinations/global_uniform_crossover.rb +49 -0
  283. data/lib/evosynth/operators/meta_operators.rb +36 -0
  284. data/lib/evosynth/operators/meta_operators/conditional_combined_operator.rb +65 -0
  285. data/lib/evosynth/operators/meta_operators/proportional_combined_operator.rb +84 -0
  286. data/lib/evosynth/operators/meta_operators/sequential_combined_operator.rb +73 -0
  287. data/lib/evosynth/operators/mutations.rb +47 -0
  288. data/lib/evosynth/operators/mutations/binary_mutation.rb +100 -0
  289. data/lib/evosynth/operators/mutations/efficient_binary_mutation.rb +105 -0
  290. data/lib/evosynth/operators/mutations/exchange_mutation.rb +107 -0
  291. data/lib/evosynth/operators/mutations/flip_functions.rb +45 -0
  292. data/lib/evosynth/operators/mutations/gauss_mutation.rb +65 -0
  293. data/lib/evosynth/operators/mutations/identity.rb +62 -0
  294. data/lib/evosynth/operators/mutations/inversion_mutation.rb +73 -0
  295. data/lib/evosynth/operators/mutations/mixing_mutation.rb +75 -0
  296. data/lib/evosynth/operators/mutations/one_gene_flipping.rb +89 -0
  297. data/lib/evosynth/operators/mutations/self_adaptive_gauss_mutation.rb +73 -0
  298. data/lib/evosynth/operators/mutations/shifting_mutation.rb +88 -0
  299. data/lib/evosynth/operators/mutations/uniform_real_mutation.rb +59 -0
  300. data/lib/evosynth/operators/recombinations.rb +48 -0
  301. data/lib/evosynth/operators/recombinations/arithmetic_crossover.rb +67 -0
  302. data/lib/evosynth/operators/recombinations/edge_recombination.rb +108 -0
  303. data/lib/evosynth/operators/recombinations/identity.rb +42 -0
  304. data/lib/evosynth/operators/recombinations/k_point_crossover.rb +81 -0
  305. data/lib/evosynth/operators/recombinations/one_point_crossover.rb +56 -0
  306. data/lib/evosynth/operators/recombinations/ordered_recombination.rb +75 -0
  307. data/lib/evosynth/operators/recombinations/partially_mapped_crossover.rb +102 -0
  308. data/lib/evosynth/operators/recombinations/uniform_crossover.rb +54 -0
  309. data/lib/evosynth/operators/selections.rb +31 -0
  310. data/lib/evosynth/operators/selections/best_selection.rb +54 -0
  311. data/lib/evosynth/operators/selections/fitness_proportional_selection.rb +83 -0
  312. data/lib/evosynth/operators/selections/identity.rb +48 -0
  313. data/lib/evosynth/operators/selections/n_stage_tournament_selection.rb +84 -0
  314. data/lib/evosynth/operators/selections/random_selection.rb +44 -0
  315. data/lib/evosynth/operators/selections/roulette_wheel_selection.rb +54 -0
  316. data/lib/evosynth/operators/selections/tournament_selection.rb +71 -0
  317. data/lib/evosynth/output.rb +28 -0
  318. data/lib/evosynth/output/console_writer.rb +45 -0
  319. data/lib/evosynth/output/exporter.rb +27 -0
  320. data/lib/evosynth/output/exporter/csv_exporter.rb +62 -0
  321. data/lib/evosynth/output/exporter/gnuplot_exporter.rb +81 -0
  322. data/lib/evosynth/output/exporter/gruff_exporter.rb +70 -0
  323. data/lib/evosynth/output/factory.rb +38 -0
  324. data/lib/evosynth/output/logger.rb +83 -0
  325. data/lib/evosynth/problems.rb +37 -0
  326. data/lib/evosynth/problems/binary_benchmark_functions.rb +74 -0
  327. data/lib/evosynth/problems/float_benchmark_functions.rb +99 -0
  328. data/lib/evosynth/problems/graph_colouring.rb +89 -0
  329. data/lib/evosynth/problems/tsp.rb +88 -0
  330. data/test/benchmark/decoder_benchmark.rb +75 -0
  331. data/test/benchmark/mutation_benchmark.rb +88 -0
  332. data/test/benchmark/recombination_benchmark.rb +58 -0
  333. data/test/benchmark/selection_benchmark.rb +52 -0
  334. data/test/core/tc_array_genome.rb +154 -0
  335. data/test/core/tc_binary_genome.rb +160 -0
  336. data/test/core/tc_population.rb +154 -0
  337. data/test/core/tc_profile.rb +75 -0
  338. data/test/core/tc_randomizer.rb +165 -0
  339. data/test/coverage.rb +43 -0
  340. data/test/decoder/tc_binary_to_real.rb +52 -0
  341. data/test/decoder/tc_gray.rb +107 -0
  342. data/test/operators/adjustments/tc_adaptive_adjustment.rb +63 -0
  343. data/test/operators/adjustments/tc_predefined_adjustment.rb +49 -0
  344. data/test/operators/global_recombinations/tc_global_arithmetic_crossover.rb +78 -0
  345. data/test/operators/global_recombinations/tc_global_uniform_crossover.rb +90 -0
  346. data/test/operators/meta_operators/tc_conditional_combined_operator.rb +66 -0
  347. data/test/operators/meta_operators/tc_proportional_combined_operator.rb +167 -0
  348. data/test/operators/meta_operators/tc_sequential_combined_operator.rb +98 -0
  349. data/test/operators/mutations/tc_binary_mutation.rb +73 -0
  350. data/test/operators/mutations/tc_efficient_binary_mutation.rb +73 -0
  351. data/test/operators/mutations/tc_exchange_mutation.rb +127 -0
  352. data/test/operators/mutations/tc_gauss_mutation.rb +130 -0
  353. data/test/operators/mutations/tc_identity_mutation.rb +64 -0
  354. data/test/operators/mutations/tc_inversion_mutation.rb +70 -0
  355. data/test/operators/mutations/tc_mixing_mutation.rb +73 -0
  356. data/test/operators/mutations/tc_one_gene_flipping.rb +109 -0
  357. data/test/operators/mutations/tc_self_adaptive_gauss_mutation.rb +72 -0
  358. data/test/operators/mutations/tc_shifting_muation.rb +73 -0
  359. data/test/operators/mutations/tc_uniform_real_mutation.rb +65 -0
  360. data/test/operators/recombinations/tc_arithmetic_crossover.rb +79 -0
  361. data/test/operators/recombinations/tc_edge_recombination.rb +76 -0
  362. data/test/operators/recombinations/tc_identity_recombination.rb +81 -0
  363. data/test/operators/recombinations/tc_k_point_crossover.rb +81 -0
  364. data/test/operators/recombinations/tc_one_point_crossover.rb +80 -0
  365. data/test/operators/recombinations/tc_ordered_recombination.rb +76 -0
  366. data/test/operators/recombinations/tc_partially_mapped_crossover.rb +91 -0
  367. data/test/operators/recombinations/tc_uniform_crossover.rb +84 -0
  368. data/test/operators/selections/tc_best_selection.rb +85 -0
  369. data/test/operators/selections/tc_fitness_proportional_selection.rb +78 -0
  370. data/test/operators/selections/tc_identity.rb +91 -0
  371. data/test/operators/selections/tc_n_stage_tournament.rb +78 -0
  372. data/test/operators/selections/tc_random_selection.rb +70 -0
  373. data/test/operators/selections/tc_roulette_wheel_selection.rb +78 -0
  374. data/test/operators/selections/tc_tournament_selection.rb +83 -0
  375. data/test/problems/tc_binary_benchmark_functions.rb +126 -0
  376. data/test/problems/tc_float_benchmark_functions.rb +100 -0
  377. data/test/test_util/test_helper.rb +128 -0
  378. data/test/ts_adjustments.rb +26 -0
  379. data/test/ts_core.rb +29 -0
  380. data/test/ts_decoder.rb +26 -0
  381. data/test/ts_global_recombinations.rb +26 -0
  382. data/test/ts_meta_operators.rb +27 -0
  383. data/test/ts_mutations.rb +35 -0
  384. data/test/ts_problems.rb +26 -0
  385. data/test/ts_recombinations.rb +32 -0
  386. data/test/ts_selections.rb +31 -0
  387. data/testdata/README +4 -0
  388. data/testdata/bays29.tsp +68 -0
  389. data/testdata/myciel4.col +77 -0
  390. metadata +552 -0
@@ -0,0 +1,286 @@
1
+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
2
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
3
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
4
+ <head>
5
+ <title>Module: EvoSynth::Decoder [EvoSynth Documentation]</title>
6
+ <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
7
+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
8
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
9
+ <script type="text/javascript">
10
+ // <![CDATA[
11
+
12
+ function popupCode( url ) {
13
+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
14
+ }
15
+
16
+ function toggleCode( id ) {
17
+ if ( document.getElementById )
18
+ elem = document.getElementById( id );
19
+ else if ( document.all )
20
+ elem = eval( "document.all." + id );
21
+ else
22
+ return false;
23
+
24
+ elemStyle = elem.style;
25
+
26
+ if ( elemStyle.display != "block" ) {
27
+ elemStyle.display = "block"
28
+ } else {
29
+ elemStyle.display = "none"
30
+ }
31
+
32
+ return true;
33
+ }
34
+
35
+ // Make codeblocks hidden by default
36
+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }<\/style>" )
37
+
38
+ // ]]>
39
+ </script>
40
+
41
+ </head>
42
+ <body>
43
+
44
+
45
+ <div id="classHeader">
46
+ <table class="header-table">
47
+ <tr class="top-aligned-row">
48
+ <td><strong>Module</strong></td>
49
+ <td class="class-name-in-header">EvoSynth::Decoder</td>
50
+ </tr>
51
+ <tr class="top-aligned-row">
52
+ <td><strong>In:</strong></td>
53
+ <td>
54
+
55
+
56
+ <a href="../../files/lib/evosynth/decoder_rb.html">
57
+
58
+ lib/evosynth/decoder.rb
59
+
60
+ </a>
61
+
62
+
63
+ <br />
64
+
65
+
66
+ <a href="../../files/lib/evosynth/decoder/binary_to_real_rb.html">
67
+
68
+ lib/evosynth/decoder/binary_to_real.rb
69
+
70
+ </a>
71
+
72
+
73
+ <br />
74
+
75
+
76
+ <a href="../../files/lib/evosynth/decoder/gray_rb.html">
77
+
78
+ lib/evosynth/decoder/gray.rb
79
+
80
+ </a>
81
+
82
+
83
+ <br />
84
+
85
+ </td>
86
+ </tr>
87
+
88
+
89
+ </table>
90
+ </div>
91
+ <!-- banner header -->
92
+
93
+ <div id="bodyContent">
94
+
95
+ <div id="contextContent">
96
+
97
+ <div id="description">
98
+ <p>
99
+ This module contains all genome decoders (genotype <-> phenotype
100
+ conversion).
101
+ </p>
102
+
103
+ </div>
104
+
105
+ </div>
106
+
107
+
108
+ <div id="method-list">
109
+ <h3 class="section-bar">Methods</h3>
110
+
111
+ <div class="name-list">
112
+
113
+ <a href="#M000123">binary_to_gray</a>&nbsp;&nbsp;
114
+
115
+ <a href="#M000121">binary_to_real</a>&nbsp;&nbsp;
116
+
117
+ <a href="#M000122">gray_to_binary</a>&nbsp;&nbsp;
118
+
119
+ </div>
120
+ </div>
121
+
122
+ </div>
123
+
124
+ <!-- if includes -->
125
+
126
+ <div id="section">
127
+
128
+
129
+
130
+
131
+ <!-- if method_list -->
132
+
133
+ <div id="methods">
134
+
135
+ <h3 class="section-bar">Public Class methods</h3>
136
+
137
+
138
+ <div id="method-M000123" class="method-detail">
139
+ <a name="M000123"></a>
140
+
141
+ <div class="method-heading">
142
+
143
+ <a href="#M000123" class="method-signature">
144
+
145
+ <span class="method-name">binary_to_gray</span><span class="method-args">(binary)</span>
146
+
147
+ </a>
148
+
149
+ </div>
150
+
151
+ <div class="method-description">
152
+
153
+ <p>
154
+ Converts a standard binary bitstring (either 1/0 or true/false) into a gray
155
+ code bitstring.
156
+ </p>
157
+
158
+ <p><a class="source-toggle" href="#"
159
+ onclick="toggleCode('M000123-source');return false;">[Source]</a></p>
160
+ <div class="method-source-code" id="M000123-source">
161
+ <pre>
162
+ <span class="ruby-comment cmt"># File lib/evosynth/decoder/gray.rb, line 42</span>
163
+ 42: <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Decoder</span>.<span class="ruby-identifier">binary_to_gray</span>(<span class="ruby-identifier">binary</span>)
164
+ 43: <span class="ruby-identifier">gray</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">binary</span>)
165
+ 44:
166
+ 45: <span class="ruby-identifier">popped</span> = <span class="ruby-identifier">gray</span>.<span class="ruby-identifier">pop</span>
167
+ 46: <span class="ruby-identifier">gray</span>.<span class="ruby-identifier">unshift</span>(<span class="ruby-identifier">popped</span> <span class="ruby-operator">^</span> <span class="ruby-identifier">popped</span>)
168
+ 47: <span class="ruby-identifier">gray</span>.<span class="ruby-identifier">each_index</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">index</span><span class="ruby-operator">|</span> <span class="ruby-identifier">gray</span>[<span class="ruby-identifier">index</span>] = <span class="ruby-identifier">binary</span>[<span class="ruby-identifier">index</span>] <span class="ruby-operator">^</span> <span class="ruby-identifier">gray</span>[<span class="ruby-identifier">index</span>]}
169
+ 48:
170
+ 49: <span class="ruby-identifier">gray</span>
171
+ 50: <span class="ruby-keyword kw">end</span>
172
+ </pre>
173
+ </div>
174
+
175
+ </div>
176
+ </div>
177
+
178
+
179
+ <div id="method-M000121" class="method-detail">
180
+ <a name="M000121"></a>
181
+
182
+ <div class="method-heading">
183
+
184
+ <a href="#M000121" class="method-signature">
185
+
186
+ <span class="method-name">Decoder.binary_to_real([1,1,0,1]) &rarr; Float (between -1.0 and 1.0)<br />
187
+ Decoder.binary_to_real([1,1,0,1], 0.0) &rarr; Float (between 0.0 and 1.0)<br />
188
+ Decoder.binary_to_real([1,1,0,1], -5.12, 5.12) &rarr; Float (between -5.12 and 5.12)<br />
189
+ </span>
190
+
191
+ </a>
192
+
193
+ </div>
194
+
195
+ <div class="method-description">
196
+
197
+ <p>
198
+ This converts a given array of binary values (either 1/0 or true/false)
199
+ into a Float in a given range.
200
+ </p>
201
+
202
+ <p><a class="source-toggle" href="#"
203
+ onclick="toggleCode('M000121-source');return false;">[Source]</a></p>
204
+ <div class="method-source-code" id="M000121-source">
205
+ <pre>
206
+ <span class="ruby-comment cmt"># File lib/evosynth/decoder/binary_to_real.rb, line 36</span>
207
+ 36: <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Decoder</span>.<span class="ruby-identifier">binary_to_real</span>(<span class="ruby-identifier">binary</span>, <span class="ruby-identifier">min_bound</span> = <span class="ruby-value">-1.0</span>, <span class="ruby-identifier">max_bound</span> = <span class="ruby-value">1.0</span>)
208
+ 37: <span class="ruby-identifier">binary</span> = <span class="ruby-identifier">binary</span>.<span class="ruby-identifier">map</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">bin</span><span class="ruby-operator">|</span>
209
+ 38: <span class="ruby-keyword kw">case</span> <span class="ruby-identifier">bin</span>
210
+ 39: <span class="ruby-keyword kw">when</span> <span class="ruby-keyword kw">false</span> <span class="ruby-keyword kw">then</span> <span class="ruby-value">0</span>
211
+ 40: <span class="ruby-keyword kw">when</span> <span class="ruby-keyword kw">true</span> <span class="ruby-keyword kw">then</span> <span class="ruby-value">1</span>
212
+ 41: <span class="ruby-keyword kw">else</span> <span class="ruby-identifier">bin</span>
213
+ 42: <span class="ruby-keyword kw">end</span>
214
+ 43: <span class="ruby-keyword kw">end</span>
215
+ 44:
216
+ 45: <span class="ruby-identifier">max_bound</span>, <span class="ruby-identifier">min_bound</span> = <span class="ruby-identifier">min_bound</span>, <span class="ruby-identifier">max_bound</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">min_bound</span> <span class="ruby-operator">&gt;</span> <span class="ruby-identifier">max_bound</span>
217
+ 46:
218
+ 47: <span class="ruby-identifier">range_size</span> = <span class="ruby-identifier">max_bound</span>.<span class="ruby-identifier">to_f</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">min_bound</span>.<span class="ruby-identifier">to_f</span>
219
+ 48: <span class="ruby-identifier">integer</span> = <span class="ruby-constant">Integer</span>(<span class="ruby-node">&quot;0b#{binary.join}&quot;</span>)
220
+ 49: <span class="ruby-identifier">max_integer</span> = <span class="ruby-constant">Integer</span>(<span class="ruby-value str">&quot;0b&quot;</span> <span class="ruby-operator">+</span> (<span class="ruby-value str">&quot;1&quot;</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">binary</span>.<span class="ruby-identifier">size</span>))
221
+ 50:
222
+ 51: <span class="ruby-identifier">float</span> = <span class="ruby-identifier">integer</span> <span class="ruby-operator">*</span> (<span class="ruby-identifier">range_size</span> <span class="ruby-operator">/</span> <span class="ruby-identifier">max_integer</span>) <span class="ruby-operator">+</span> <span class="ruby-identifier">min_bound</span>;
223
+ 52: <span class="ruby-identifier">float</span>
224
+ 53: <span class="ruby-keyword kw">end</span>
225
+ </pre>
226
+ </div>
227
+
228
+ </div>
229
+ </div>
230
+
231
+
232
+ <div id="method-M000122" class="method-detail">
233
+ <a name="M000122"></a>
234
+
235
+ <div class="method-heading">
236
+
237
+ <a href="#M000122" class="method-signature">
238
+
239
+ <span class="method-name">gray_to_binary</span><span class="method-args">(gray)</span>
240
+
241
+ </a>
242
+
243
+ </div>
244
+
245
+ <div class="method-description">
246
+
247
+ <p>
248
+ Converts a binary gray code bitstring (either 1/0 or true/false) into a
249
+ standard binary bitstring.
250
+ </p>
251
+
252
+ <p><a class="source-toggle" href="#"
253
+ onclick="toggleCode('M000122-source');return false;">[Source]</a></p>
254
+ <div class="method-source-code" id="M000122-source">
255
+ <pre>
256
+ <span class="ruby-comment cmt"># File lib/evosynth/decoder/gray.rb, line 30</span>
257
+ 30: <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Decoder</span>.<span class="ruby-identifier">gray_to_binary</span>(<span class="ruby-identifier">gray</span>)
258
+ 31: <span class="ruby-identifier">rev_stdbin</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">gray</span>.<span class="ruby-identifier">size</span>)
259
+ 32: <span class="ruby-identifier">gray</span>.<span class="ruby-identifier">reverse!</span>
260
+ 33:
261
+ 34: <span class="ruby-identifier">rev_stdbin</span>[<span class="ruby-identifier">gray</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">-</span> <span class="ruby-value">1</span>] = <span class="ruby-identifier">gray</span>[<span class="ruby-identifier">gray</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">-</span> <span class="ruby-value">1</span>]
262
+ 35: (<span class="ruby-identifier">gray</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">-</span> <span class="ruby-value">2</span>).<span class="ruby-identifier">downto</span>(<span class="ruby-value">0</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">index</span><span class="ruby-operator">|</span> <span class="ruby-identifier">rev_stdbin</span>[<span class="ruby-identifier">index</span>] = <span class="ruby-identifier">rev_stdbin</span>[<span class="ruby-identifier">index</span> <span class="ruby-operator">+</span> <span class="ruby-value">1</span>] <span class="ruby-operator">^</span> <span class="ruby-identifier">gray</span>[<span class="ruby-identifier">index</span>] }
263
+ 36:
264
+ 37: <span class="ruby-identifier">rev_stdbin</span>.<span class="ruby-identifier">reverse</span>
265
+ 38: <span class="ruby-keyword kw">end</span>
266
+ </pre>
267
+ </div>
268
+
269
+ </div>
270
+ </div>
271
+
272
+
273
+
274
+ </div>
275
+
276
+
277
+
278
+
279
+ </div>
280
+
281
+ <div id="validator-badges">
282
+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
283
+ </div>
284
+
285
+ </body>
286
+ </html>
@@ -0,0 +1,466 @@
1
+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
2
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
3
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
4
+ <head>
5
+ <title>Class: EvoSynth::Evaluator [EvoSynth Documentation]</title>
6
+ <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
7
+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
8
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
9
+ <script type="text/javascript">
10
+ // <![CDATA[
11
+
12
+ function popupCode( url ) {
13
+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
14
+ }
15
+
16
+ function toggleCode( id ) {
17
+ if ( document.getElementById )
18
+ elem = document.getElementById( id );
19
+ else if ( document.all )
20
+ elem = eval( "document.all." + id );
21
+ else
22
+ return false;
23
+
24
+ elemStyle = elem.style;
25
+
26
+ if ( elemStyle.display != "block" ) {
27
+ elemStyle.display = "block"
28
+ } else {
29
+ elemStyle.display = "none"
30
+ }
31
+
32
+ return true;
33
+ }
34
+
35
+ // Make codeblocks hidden by default
36
+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }<\/style>" )
37
+
38
+ // ]]>
39
+ </script>
40
+
41
+ </head>
42
+ <body>
43
+
44
+
45
+ <div id="classHeader">
46
+ <table class="header-table">
47
+ <tr class="top-aligned-row">
48
+ <td><strong>Class</strong></td>
49
+ <td class="class-name-in-header">EvoSynth::Evaluator</td>
50
+ </tr>
51
+ <tr class="top-aligned-row">
52
+ <td><strong>In:</strong></td>
53
+ <td>
54
+
55
+
56
+ <a href="../../files/lib/evosynth/core/evaluator_rb.html">
57
+
58
+ lib/evosynth/core/evaluator.rb
59
+
60
+ </a>
61
+
62
+
63
+ <br />
64
+
65
+ </td>
66
+ </tr>
67
+
68
+
69
+ <tr class="top-aligned-row">
70
+ <td><strong>Parent:</strong></td>
71
+ <td>
72
+
73
+ Object
74
+
75
+ </td>
76
+ </tr>
77
+
78
+ </table>
79
+ </div>
80
+ <!-- banner header -->
81
+
82
+ <div id="bodyContent">
83
+
84
+ <div id="contextContent">
85
+
86
+ <div id="description">
87
+ <p>
88
+ Baseclass for all fitness evaluators. It also counts how often it was used
89
+ to calculate the fitness of a given individual and how often it actually
90
+ calculated the fitness.
91
+ </p>
92
+ <p>
93
+ For simple problems you just need to overwrite <a
94
+ href="Evaluator.html#M000226">calculate_fitness</a>(individual)
95
+ </p>
96
+ <p>
97
+ Obervers get notified each time <a
98
+ href="Evaluator.html#M000224">calculate_and_set_fitness</a>(individual)
99
+ gets called, not on actual calculations
100
+ </p>
101
+
102
+ </div>
103
+
104
+ </div>
105
+
106
+
107
+ <div id="method-list">
108
+ <h3 class="section-bar">Methods</h3>
109
+
110
+ <div class="name-list">
111
+
112
+ <a href="#M000224">calculate_and_set_fitness</a>&nbsp;&nbsp;
113
+
114
+ <a href="#M000225">calculate_and_set_initial_fitness</a>&nbsp;&nbsp;
115
+
116
+ <a href="#M000226">calculate_fitness</a>&nbsp;&nbsp;
117
+
118
+ <a href="#M000227">calculate_initial_fitness</a>&nbsp;&nbsp;
119
+
120
+ <a href="#M000223">new</a>&nbsp;&nbsp;
121
+
122
+ <a href="#M000228">reset_counters</a>&nbsp;&nbsp;
123
+
124
+ <a href="#M000229">to_s</a>&nbsp;&nbsp;
125
+
126
+ </div>
127
+ </div>
128
+
129
+ </div>
130
+
131
+ <!-- if includes -->
132
+
133
+ <div id="includes">
134
+ <h3 class="section-bar">Included Modules</h3>
135
+
136
+ <div id="includes-list">
137
+
138
+ <span class="include-name">Observable</span>
139
+
140
+ </div>
141
+ </div>
142
+
143
+ <div id="section">
144
+
145
+
146
+
147
+ <div id="attribute-list">
148
+ <h3 class="section-bar">Attributes</h3>
149
+
150
+ <div class="name-list">
151
+ <table>
152
+
153
+ <tr class="top-aligned-row context-row">
154
+ <td class="context-item-name">calculated</td>
155
+
156
+ <td class="context-item-value">&nbsp;[R]&nbsp;</td>
157
+
158
+ <td class="context-item-desc">
159
+ How often did the <a href="Evaluator.html">Evaluator</a> actually calculate
160
+ a fitness value
161
+
162
+ </td>
163
+ </tr>
164
+
165
+ <tr class="top-aligned-row context-row">
166
+ <td class="context-item-name">called</td>
167
+
168
+ <td class="context-item-value">&nbsp;[R]&nbsp;</td>
169
+
170
+ <td class="context-item-desc">
171
+ How often did the <a href="Evaluator.html">Evaluator</a> return a fitness
172
+ value
173
+
174
+ </td>
175
+ </tr>
176
+
177
+ </table>
178
+ </div>
179
+ </div>
180
+
181
+
182
+ <!-- if method_list -->
183
+
184
+ <div id="methods">
185
+
186
+ <h3 class="section-bar">Public Class methods</h3>
187
+
188
+
189
+ <div id="method-M000223" class="method-detail">
190
+ <a name="M000223"></a>
191
+
192
+ <div class="method-heading">
193
+
194
+ <a href="#M000223" class="method-signature">
195
+
196
+ <span class="method-name">new</span><span class="method-args">()</span>
197
+
198
+ </a>
199
+
200
+ </div>
201
+
202
+ <div class="method-description">
203
+
204
+ <p>
205
+ Returns a new <a href="Evaluator.html">Evaluator</a> object
206
+ </p>
207
+
208
+ <p><a class="source-toggle" href="#"
209
+ onclick="toggleCode('M000223-source');return false;">[Source]</a></p>
210
+ <div class="method-source-code" id="M000223-source">
211
+ <pre>
212
+ <span class="ruby-comment cmt"># File lib/evosynth/core/evaluator.rb, line 50</span>
213
+ 50: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>
214
+ 51: <span class="ruby-identifier">reset_counters</span>
215
+ 52: <span class="ruby-keyword kw">end</span>
216
+ </pre>
217
+ </div>
218
+
219
+ </div>
220
+ </div>
221
+
222
+
223
+ <h3 class="section-bar">Public Instance methods</h3>
224
+
225
+
226
+ <div id="method-M000224" class="method-detail">
227
+ <a name="M000224"></a>
228
+
229
+ <div class="method-heading">
230
+
231
+ <a href="#M000224" class="method-signature">
232
+
233
+ <span class="method-name">calculate_and_set_fitness</span><span class="method-args">(individual)</span>
234
+
235
+ </a>
236
+
237
+ </div>
238
+
239
+ <div class="method-description">
240
+
241
+ <p>
242
+ Calculates and sets the fitness of the given individual if the individual
243
+ has changed, otherwise it just returns the cached fitness of the individual
244
+ </p>
245
+
246
+ <p><a class="source-toggle" href="#"
247
+ onclick="toggleCode('M000224-source');return false;">[Source]</a></p>
248
+ <div class="method-source-code" id="M000224-source">
249
+ <pre>
250
+ <span class="ruby-comment cmt"># File lib/evosynth/core/evaluator.rb, line 57</span>
251
+ 57: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">calculate_and_set_fitness</span>(<span class="ruby-identifier">individual</span>)
252
+ 58: <span class="ruby-ivar">@called</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
253
+ 59:
254
+ 60: <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">individual</span>.<span class="ruby-identifier">changed?</span>
255
+ 61: <span class="ruby-ivar">@calculated</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
256
+ 62: <span class="ruby-identifier">individual</span>.<span class="ruby-identifier">fitness</span> = <span class="ruby-identifier">calculate_fitness</span>(<span class="ruby-identifier">individual</span>)
257
+ 63: <span class="ruby-keyword kw">end</span>
258
+ 64:
259
+ 65: <span class="ruby-identifier">changed</span>
260
+ 66: <span class="ruby-identifier">notify_observers</span> <span class="ruby-keyword kw">self</span>, <span class="ruby-ivar">@called</span>
261
+ 67: <span class="ruby-identifier">individual</span>.<span class="ruby-identifier">fitness</span>
262
+ 68: <span class="ruby-keyword kw">end</span>
263
+ </pre>
264
+ </div>
265
+
266
+ </div>
267
+ </div>
268
+
269
+
270
+ <div id="method-M000225" class="method-detail">
271
+ <a name="M000225"></a>
272
+
273
+ <div class="method-heading">
274
+
275
+ <a href="#M000225" class="method-signature">
276
+
277
+ <span class="method-name">calculate_and_set_initial_fitness</span><span class="method-args">(individual)</span>
278
+
279
+ </a>
280
+
281
+ </div>
282
+
283
+ <div class="method-description">
284
+
285
+ <p>
286
+ Calculates and sets the initial fitness of the given individual.
287
+ </p>
288
+
289
+ <p><a class="source-toggle" href="#"
290
+ onclick="toggleCode('M000225-source');return false;">[Source]</a></p>
291
+ <div class="method-source-code" id="M000225-source">
292
+ <pre>
293
+ <span class="ruby-comment cmt"># File lib/evosynth/core/evaluator.rb, line 72</span>
294
+ 72: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">calculate_and_set_initial_fitness</span>(<span class="ruby-identifier">individual</span>)
295
+ 73: <span class="ruby-ivar">@called</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
296
+ 74: <span class="ruby-ivar">@calculated</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
297
+ 75:
298
+ 76: <span class="ruby-identifier">individual</span>.<span class="ruby-identifier">fitness</span> = <span class="ruby-identifier">calculate_initial_fitness</span>(<span class="ruby-identifier">individual</span>)
299
+ 77:
300
+ 78: <span class="ruby-identifier">changed</span>
301
+ 79: <span class="ruby-identifier">notify_observers</span> <span class="ruby-keyword kw">self</span>, <span class="ruby-ivar">@called</span>
302
+ 80: <span class="ruby-identifier">individual</span>.<span class="ruby-identifier">fitness</span>
303
+ 81: <span class="ruby-keyword kw">end</span>
304
+ </pre>
305
+ </div>
306
+
307
+ </div>
308
+ </div>
309
+
310
+
311
+ <div id="method-M000226" class="method-detail">
312
+ <a name="M000226"></a>
313
+
314
+ <div class="method-heading">
315
+
316
+ <a href="#M000226" class="method-signature">
317
+
318
+ <span class="method-name">calculate_fitness</span><span class="method-args">(individual)</span>
319
+
320
+ </a>
321
+
322
+ </div>
323
+
324
+ <div class="method-description">
325
+
326
+ <p>
327
+ This function is actually used to calculate the fitness of a individual.
328
+ It&#8217;s the &#8220;fitness function&#8221;.
329
+ </p>
330
+
331
+ <p><a class="source-toggle" href="#"
332
+ onclick="toggleCode('M000226-source');return false;">[Source]</a></p>
333
+ <div class="method-source-code" id="M000226-source">
334
+ <pre>
335
+ <span class="ruby-comment cmt"># File lib/evosynth/core/evaluator.rb, line 85</span>
336
+ 85: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">calculate_fitness</span>(<span class="ruby-identifier">individual</span>)
337
+ 86: <span class="ruby-identifier">raise</span> <span class="ruby-constant">NotImplementedError</span>, <span class="ruby-value str">&quot;please implement calculate_fitness!&quot;</span>
338
+ 87: <span class="ruby-keyword kw">end</span>
339
+ </pre>
340
+ </div>
341
+
342
+ </div>
343
+ </div>
344
+
345
+
346
+ <div id="method-M000227" class="method-detail">
347
+ <a name="M000227"></a>
348
+
349
+ <div class="method-heading">
350
+
351
+ <a href="#M000227" class="method-signature">
352
+
353
+ <span class="method-name">calculate_initial_fitness</span><span class="method-args">(individual)</span>
354
+
355
+ </a>
356
+
357
+ </div>
358
+
359
+ <div class="method-description">
360
+
361
+ <p>
362
+ This function is used to calculate an intitial fitness value for a
363
+ individual. Calls <a href="Evaluator.html#M000226">calculate_fitness</a> by
364
+ default.
365
+ </p>
366
+
367
+ <p><a class="source-toggle" href="#"
368
+ onclick="toggleCode('M000227-source');return false;">[Source]</a></p>
369
+ <div class="method-source-code" id="M000227-source">
370
+ <pre>
371
+ <span class="ruby-comment cmt"># File lib/evosynth/core/evaluator.rb, line 91</span>
372
+ 91: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">calculate_initial_fitness</span>(<span class="ruby-identifier">individual</span>)
373
+ 92: <span class="ruby-identifier">calculate_fitness</span>(<span class="ruby-identifier">individual</span>)
374
+ 93: <span class="ruby-keyword kw">end</span>
375
+ </pre>
376
+ </div>
377
+
378
+ </div>
379
+ </div>
380
+
381
+
382
+ <div id="method-M000228" class="method-detail">
383
+ <a name="M000228"></a>
384
+
385
+ <div class="method-heading">
386
+
387
+ <a href="#M000228" class="method-signature">
388
+
389
+ <span class="method-name">reset_counters</span><span class="method-args">()</span>
390
+
391
+ </a>
392
+
393
+ </div>
394
+
395
+ <div class="method-description">
396
+
397
+ <p>
398
+ Reset the called/calculated counters of the <a
399
+ href="Evaluator.html">Evaluator</a>
400
+ </p>
401
+
402
+ <p><a class="source-toggle" href="#"
403
+ onclick="toggleCode('M000228-source');return false;">[Source]</a></p>
404
+ <div class="method-source-code" id="M000228-source">
405
+ <pre>
406
+ <span class="ruby-comment cmt"># File lib/evosynth/core/evaluator.rb, line 97</span>
407
+ 97: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">reset_counters</span>
408
+ 98: <span class="ruby-ivar">@called</span> = <span class="ruby-value">0</span>
409
+ 99: <span class="ruby-ivar">@calculated</span> = <span class="ruby-value">0</span>
410
+ 100: <span class="ruby-keyword kw">end</span>
411
+ </pre>
412
+ </div>
413
+
414
+ </div>
415
+ </div>
416
+
417
+
418
+ <div id="method-M000229" class="method-detail">
419
+ <a name="M000229"></a>
420
+
421
+ <div class="method-heading">
422
+
423
+ <a href="#M000229" class="method-signature">
424
+
425
+ <span class="method-name">to_s</span><span class="method-args">()</span>
426
+
427
+ </a>
428
+
429
+ </div>
430
+
431
+ <div class="method-description">
432
+
433
+ <p>
434
+ Returns a human readable reprasentation of the <a
435
+ href="Evaluator.html">Evaluator</a>
436
+ </p>
437
+
438
+ <p><a class="source-toggle" href="#"
439
+ onclick="toggleCode('M000229-source');return false;">[Source]</a></p>
440
+ <div class="method-source-code" id="M000229-source">
441
+ <pre>
442
+ <span class="ruby-comment cmt"># File lib/evosynth/core/evaluator.rb, line 104</span>
443
+ 104: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_s</span>
444
+ 105: <span class="ruby-node">&quot;Evaluator &lt;called: #{@called}, calculated: #{@calculated}&gt;&quot;</span>
445
+ 106: <span class="ruby-keyword kw">end</span>
446
+ </pre>
447
+ </div>
448
+
449
+ </div>
450
+ </div>
451
+
452
+
453
+
454
+ </div>
455
+
456
+
457
+
458
+
459
+ </div>
460
+
461
+ <div id="validator-badges">
462
+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
463
+ </div>
464
+
465
+ </body>
466
+ </html>