RubyGems - evosynth - Versions diffs - 0.1.0 - Mend

evosynth 0.1.0

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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN"
+"http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<!--
+    EvoSynth Documentation
+  -->
+<head>
+  <title>EvoSynth Documentation</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
+</head>
+<frameset rows="20%, 80%">
+    <frameset cols="25%,35%,45%">
+        <frame src="fr_file_index.html"   title="Files" name="Files" />
+        <frame src="fr_class_index.html"  name="Classes" />
+        <frame src="fr_method_index.html" name="Methods" />
+    </frameset>
+    <frame src="files/README.html" name="docwin" />
+</frameset>
+</html>

data/docs/rdoc/rdoc-style.css ADDED

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+/* and inside a section title */
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data/examples/ants.rb ADDED

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+#	Copyright (c) 2009, 2010 Yves Adler <yves.adler@googlemail.com>
+#
+#	Permission is hereby granted, free of charge, to any person
+#	obtaining a copy of this software and associated documentation
+#	files (the "Software"), to deal in the Software without
+#	restriction, including without limitation the rights to use,
+#	copy, modify, merge, publish, distribute, sublicense, and/or sell
+#	copies of the Software, and to permit persons to whom the
+#	Software is furnished to do so, subject to the following
+#	conditions:
+#
+#	The above copyright notice and this permission notice shall be
+#	included in all copies or substantial portions of the Software.
+#
+#	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+#	EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
+#	OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+#	NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
+#	HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+#	WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+#	FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+#	OTHER DEALINGS IN THE SOFTWARE.
+require 'evosynth'
+require 'set'
+require 'matrix'
+module Examples
+	module Ants
+		class Pheromon
+			attr_accessor :matrix
+			def initialize(node_count, evaporation_weight = 0.7)
+				@evaporation_weight = evaporation_weight
+				@matrix = Matrix.zero(node_count).collect { |i| i + 1.0 }
+			end
+			def update(ants)
+				@matrix = @matrix.collect { |i| i * @evaporation_weight }
+				columns = @matrix.column_vectors
+				columns.map! { |col| col.to_a }
+				ants.each do |ant|
+					ant.genome.each_with_index do |node, index|
+						break if (index + 1) >= ant.genome.size
+						columns[node][ant.genome[index + 1]] += 100.0 / ant.fitness
+					end
+				end
+				columns.map! { |col| Vector.elements(col) }
+				@matrix = Matrix.columns(columns)
+			end
+			def to_s
+				@matrix.to_s
+			end
+		end
+		# TODO: this mutation should be refactored
+		class AntMutation
+			def initialize(tsp, pheromon, start, exploration_weight = 0.5, distance_weight = 2.0)
+				@tsp = tsp
+				@pheromon = pheromon
+				@start = start
+				@exploration_weight = exploration_weight
+				@distance_weight = distance_weight
+			end
+			def mutate(ant)
+				mutated = ant.deep_clone
+				mutated.genome[1..mutated.genome.size-1] = []
+				mutated.genome = rand_route
+				mutated
+			end
+			def to_s
+				"simple ant mutation <start: #{@start}, exploration_weight: #{@exploration_weight}>"
+			end
+			def get_next_node(existing_route, pheromon, last_node)
+				best_pr = 0.0
+				best_node = nil
+				route = existing_route.to_set
+				raise "shit!" if last_node.nil?
+				distances = @tsp.matrix.row(last_node).to_a
+				distances.each_with_index do |distance, node_index|
+					unless route.include?(node_index)
+						pr = pheromon.matrix[last_node, node_index]
+						pr *= (1.0 / distance) ** @distance_weight
+						pr /= get_sum(existing_route, pheromon, last_node)
+						pr *= EvoSynth.rand
+					else
+						pr = 0.0
+					end
+					if pr >= best_pr
+						best_node = node_index
+						best_pr = pr
+					end
+				end
+				best_node
+			end
+			def get_sum(existing_route, pheromon, last_node)
+				sum = 0.0
+				route = existing_route.to_set
+				distances = @tsp.matrix.row(last_node).to_a
+				distances.each_with_index do |distance, node_index|
+					next if route.include?(node_index)
+					sum += pheromon.matrix[last_node, node_index] * (distance ** @distance_weight)
+				end
+				sum
+			end
+			def get_nearest_node(existing_route, last_node)
+				best_distance = Float::MAX
+				best_node = nil
+				route = existing_route.to_set
+				raise "shit-2!" if last_node.nil?
+				distances = @tsp.matrix.row(last_node).to_a
+				distances.each_with_index do |distance_to_node, node_index|
+					next if route.include?(node_index)
+					if best_distance > distance_to_node
+						best_distance = distance_to_node
+						best_node = node_index
+					end
+				end
+				best_node
+			end
+			private
+			def rand_route
+				genome = EvoSynth::ArrayGenome.new
+				genome << @start
+				(@tsp.size - 1).times do
+					puts genome.inspect if genome.last.nil?
+					if EvoSynth.rand < @exploration_weight
+						genome << get_next_node(genome, @pheromon, genome.last)
+					else
+						genome << get_nearest_node(genome, genome.last)
+					end
+				end
+				genome
+			end
+		end
+		def Ants.evolver_profile(tsp, pheromon)
+			ant_mutation = Ants::AntMutation.new(tsp, pheromon, 1, 0.2)
+			population = EvoSynth::Population.new(10) do
+				ant = EvoSynth::MinimizingIndividual.new(EvoSynth::ArrayGenome.new)
+				ant_mutation.mutate(ant)
+			end
+			combined_mutation = EvoSynth::MetaOperators::ProportionalCombinedOperator.new
+			combined_mutation.add(EvoSynth::Mutations::InversionMutation.new, 0.25)
+			combined_mutation.add(ant_mutation, 0.75)
+			EvoSynth::Profile.new(
+				:mutation			=> combined_mutation,
+				:parent_selection	=> EvoSynth::Selections::FitnessProportionalSelection.new,
+				:population			=> population,
+				:recombination		=> EvoSynth::Recombinations::PartiallyMappedCrossover.new,
+				:evaluator			=> tsp
+			)
+		end
+		# try to load the testcase
+		tsp = nil
+		begin
+			tsp = EvoSynth::Problems::TSP.new('testdata/bays29.tsp')
+		rescue
+			puts "Could not load test data. Please see testdata/README for instructions..."
+			exit(0)
+		end
+		puts "read testdata/bays29.tsp - matrix contains #{tsp.size} nodes..."
+		# we need to "get into" the used evolver to update the pheromon
+		# each iteration of the
+		PHEROMON = Ants::Pheromon.new(tsp.size)
+		class EvoSynth::Evolvers::GeneticAlgorithm
+			alias :ant_next_generation :next_generation
+			def next_generation
+				ant_next_generation
+				PHEROMON.update(@population);
+			end
+		end
+		# setup the profile, optimal solution and run the evolver:
+		profile = Ants.evolver_profile(tsp, PHEROMON)
+		opt_tour = [1,28,6,12,9,5,26,29,3,2,20,10,4,15,18,17,14,22,11,19,25,7,23,27,8,24,16,13,21].map! { |num| num -= 1 }
+		optimal = EvoSynth::MinimizingIndividual.new(EvoSynth::ArrayGenome.new(opt_tour))
+		profile.evaluator.calculate_and_set_fitness(optimal)
+		puts "Optimal Individual for this problem: #{optimal}"
+		puts "Best Individual before evolution: #{profile.population.best}"
+		evolver = EvoSynth::Evolvers::GeneticAlgorithm.new(profile)
+		EvoSynth::Evolvers.add_weak_elistism(evolver)
+		evolver.add_observer(EvoSynth::Output.create_console_logger(25,
+			"generations"	=> ->{ evolver.generations_computed },
+			"bestfitness"   => ->{ evolver.best_solution.fitness },
+			"worstfitness"  => ->{ evolver.worst_solution.fitness }
+		))
+		result = evolver.run_until_generations_reached(500)
+		puts evolver
+		puts "\nBest Individual after evolution:  #{result.best}"
+		puts "oooops" if result.best.genome.size != result.best.genome.uniq.size
+	end
+end