evosynth 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/INSTALL +74 -0
- data/LICENSE +22 -0
- data/README +57 -0
- data/Rakefile +132 -0
- data/TODO +88 -0
- data/docs/FEATURES +111 -0
- data/docs/rdoc/classes/EvoSynth.html +2643 -0
- data/docs/rdoc/classes/EvoSynth/Adjustments.html +119 -0
- data/docs/rdoc/classes/EvoSynth/Adjustments/AdaptiveAdjustment.html +264 -0
- data/docs/rdoc/classes/EvoSynth/Adjustments/PredifinedAdjustment.html +235 -0
- data/docs/rdoc/classes/EvoSynth/ArrayGenome.html +313 -0
- data/docs/rdoc/classes/EvoSynth/BinaryGenome.html +518 -0
- data/docs/rdoc/classes/EvoSynth/Decoder.html +286 -0
- data/docs/rdoc/classes/EvoSynth/Evaluator.html +466 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers.html +469 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/AdaptiveES.html +448 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/BalancedCoevolutionary.html +439 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/DerandomizedES.html +450 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/Evolver.html +125 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/GeneticAlgorithm.html +467 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/Hillclimber.html +343 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch.html +422 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/GreatDelugeAcceptance.html +287 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/HillclimberAcceptance.html +197 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/RecordToRecordTravelAcceptance.html +296 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/SimulatedAnnealingAcceptance.html +286 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/LocalSearch/ThresholdAcceptance.html +287 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/MemeticAlgorithm.html +441 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/PopulationHillclimber.html +375 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/ProfileUsingEvolver.html +205 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/RoundRobinCoevolutionary.html +383 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/RunnableEvolver.html +279 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/RunnableEvolver/Goal.html +193 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/SelfAdaptiveES.html +394 -0
- data/docs/rdoc/classes/EvoSynth/Evolvers/SteadyStateGA.html +390 -0
- data/docs/rdoc/classes/EvoSynth/GlobalRecombinations.html +119 -0
- data/docs/rdoc/classes/EvoSynth/GlobalRecombinations/GlobalArithmeticCrossover.html +204 -0
- data/docs/rdoc/classes/EvoSynth/GlobalRecombinations/GlobalUniformCrossover.html +203 -0
- data/docs/rdoc/classes/EvoSynth/Individual.html +561 -0
- data/docs/rdoc/classes/EvoSynth/MaximizingIndividual.html +266 -0
- data/docs/rdoc/classes/EvoSynth/MetaOperators.html +149 -0
- data/docs/rdoc/classes/EvoSynth/MetaOperators/ConditionalCombinedOperator.html +278 -0
- data/docs/rdoc/classes/EvoSynth/MetaOperators/ProportionalCombinedOperator.html +285 -0
- data/docs/rdoc/classes/EvoSynth/MetaOperators/SequentialCombinedOperator.html +290 -0
- data/docs/rdoc/classes/EvoSynth/MinimizingIndividual.html +266 -0
- data/docs/rdoc/classes/EvoSynth/Mutations.html +251 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/BinaryMutation.html +336 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/EfficientBinaryMutation.html +345 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/ExchangeMutation.html +320 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/Functions.html +160 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/GaussMutation.html +311 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/Identity.html +220 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/InversionMutation.html +231 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/MixingMutation.html +233 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/OneGeneFlipping.html +295 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/SelfAdaptiveGaussMutation.html +347 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/ShiftingMutation.html +229 -0
- data/docs/rdoc/classes/EvoSynth/Mutations/UniformRealMutation.html +264 -0
- data/docs/rdoc/classes/EvoSynth/Output.html +212 -0
- data/docs/rdoc/classes/EvoSynth/Output/CSVExporter.html +211 -0
- data/docs/rdoc/classes/EvoSynth/Output/ConsoleWriter.html +194 -0
- data/docs/rdoc/classes/EvoSynth/Output/GnuPlotExporter.html +235 -0
- data/docs/rdoc/classes/EvoSynth/Output/GruffExporter.html +219 -0
- data/docs/rdoc/classes/EvoSynth/Output/Logger.html +345 -0
- data/docs/rdoc/classes/EvoSynth/Population.html +430 -0
- data/docs/rdoc/classes/EvoSynth/Problems.html +159 -0
- data/docs/rdoc/classes/EvoSynth/Problems/BinaryBenchmarkFuntions.html +258 -0
- data/docs/rdoc/classes/EvoSynth/Problems/FloatBenchmarkFuntions.html +406 -0
- data/docs/rdoc/classes/EvoSynth/Problems/GraphColouring.html +265 -0
- data/docs/rdoc/classes/EvoSynth/Problems/TSP.html +327 -0
- data/docs/rdoc/classes/EvoSynth/Profile.html +324 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations.html +251 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations/ArithmeticCrossover.html +286 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations/EdgeRecombination.html +203 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations/Identity.html +192 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations/KPointCrossover.html +286 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations/OnePointCrossover.html +211 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations/OrderedRecombination.html +206 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations/PartiallyMappedCrossover.html +206 -0
- data/docs/rdoc/classes/EvoSynth/Recombinations/UniformCrossover.html +208 -0
- data/docs/rdoc/classes/EvoSynth/Selections.html +174 -0
- data/docs/rdoc/classes/EvoSynth/Selections/FitnessProportionalSelection.html +206 -0
- data/docs/rdoc/classes/EvoSynth/Selections/Identity.html +200 -0
- data/docs/rdoc/classes/EvoSynth/Selections/NStageTournamentSelection.html +273 -0
- data/docs/rdoc/classes/EvoSynth/Selections/RandomSelection.html +192 -0
- data/docs/rdoc/classes/EvoSynth/Selections/RouletteWheelSelection.html +212 -0
- data/docs/rdoc/classes/EvoSynth/Selections/SelectBest.html +206 -0
- data/docs/rdoc/classes/EvoSynth/Selections/TournamentSelection.html +274 -0
- data/docs/rdoc/classes/Examples.html +268 -0
- data/docs/rdoc/classes/Examples/Ants.html +198 -0
- data/docs/rdoc/classes/Examples/Ants/AntMutation.html +381 -0
- data/docs/rdoc/classes/Examples/Ants/Pheromon.html +256 -0
- data/docs/rdoc/classes/Examples/CCGAExample.html +305 -0
- data/docs/rdoc/classes/Examples/CCGAExample/CCGA2BenchmarkEvaluator.html +165 -0
- data/docs/rdoc/classes/Examples/CCGAExample/CCGABenchmarkEvaluator.html +242 -0
- data/docs/rdoc/classes/Examples/CCGAExample/CCGAIndividual.html +181 -0
- data/docs/rdoc/classes/Examples/CMBExample.html +215 -0
- data/docs/rdoc/classes/Examples/CMBExample/CMBEvaluator.html +212 -0
- data/docs/rdoc/classes/Examples/EsExample.html +270 -0
- data/docs/rdoc/classes/Examples/EsExample/BenchmarkEvaluator.html +162 -0
- data/docs/rdoc/classes/Examples/Exporter.html +208 -0
- data/docs/rdoc/classes/Examples/Exporter/ExporterEvaluator.html +196 -0
- data/docs/rdoc/classes/Examples/GraphColouring.html +199 -0
- data/docs/rdoc/classes/Examples/Hacking.html +147 -0
- data/docs/rdoc/classes/Examples/Hacking/HackingEvaluator.html +169 -0
- data/docs/rdoc/classes/Examples/LocalSearch.html +294 -0
- data/docs/rdoc/classes/Examples/LocalSearch/LocalSearchEvaluator.html +198 -0
- data/docs/rdoc/classes/Examples/MaxOnes.html +187 -0
- data/docs/rdoc/classes/Examples/MaxOnes/MaxOnesEvaluator.html +170 -0
- data/docs/rdoc/classes/Examples/Partitionproblem.html +201 -0
- data/docs/rdoc/classes/Examples/Partitionproblem/PartitionEvaluator.html +164 -0
- data/docs/rdoc/classes/Examples/Partitionproblem/PartitionIndividual.html +334 -0
- data/docs/rdoc/classes/Examples/Partitionproblem/PartitionMutation.html +199 -0
- data/docs/rdoc/classes/Examples/Partitionproblem/Testdata.html +294 -0
- data/docs/rdoc/classes/Examples/SPk.html +139 -0
- data/docs/rdoc/classes/Examples/SPk/SPkFitnessEvaluator.html +299 -0
- data/docs/rdoc/classes/Examples/TSP.html +187 -0
- data/docs/rdoc/created.rid +1 -0
- data/docs/rdoc/files/INSTALL.html +253 -0
- data/docs/rdoc/files/LICENSE.html +119 -0
- data/docs/rdoc/files/README.html +235 -0
- data/docs/rdoc/files/docs/FEATURES.html +428 -0
- data/docs/rdoc/files/examples/ants_rb.html +133 -0
- data/docs/rdoc/files/examples/ccga_example_rb.html +129 -0
- data/docs/rdoc/files/examples/cmb_example_rb.html +129 -0
- data/docs/rdoc/files/examples/evolution_strategies_rb.html +129 -0
- data/docs/rdoc/files/examples/exporter_rb.html +129 -0
- data/docs/rdoc/files/examples/graph_colouring_rb.html +129 -0
- data/docs/rdoc/files/examples/hacking_rb.html +129 -0
- data/docs/rdoc/files/examples/local_search_rb.html +129 -0
- data/docs/rdoc/files/examples/max_ones_rb.html +129 -0
- data/docs/rdoc/files/examples/partition_rb.html +131 -0
- data/docs/rdoc/files/examples/spk_rb.html +129 -0
- data/docs/rdoc/files/examples/tsp_rb.html +131 -0
- data/docs/rdoc/files/lib/evosynth/core/array_genome_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/core/binary_genome_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/core/evaluator_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/core/individual_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/core/maximizing_individual_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/core/minimizing_individual_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/core/population_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/core/profile_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/core/randomizer_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/core_rb.html +145 -0
- data/docs/rdoc/files/lib/evosynth/decoder/binary_to_real_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/decoder/gray_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/decoder_rb.html +131 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/basic/genetic_algorithm_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/basic/hillclimber_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/basic/memetic_algorithm_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/basic/population_hillclimber_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/basic/steady_state_ga_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/coevolutionary/balanced_coevolutionary_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/coevolutionary/round_robin_coevolutionary_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/elitism_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/evolution_strategies/adaptive_es_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/evolution_strategies/derandomized_es_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/evolution_strategies/selfadaptive_es_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/evolver_rb.html +131 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_great_deluge_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_hillclimber_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_record_to_record_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_simulated_annealing_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/local_search/acceptance_threshold_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/local_search/local_search_rb.html +137 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/profile_using_evolver_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/evolvers/runnable_evolver_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/evolvers_rb.html +153 -0
- data/docs/rdoc/files/lib/evosynth/operators/adjustments/adaptive_adjustment_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/adjustments/predefined_adjustment_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/adjustments_rb.html +131 -0
- data/docs/rdoc/files/lib/evosynth/operators/global_recombinations/global_arithmetic_crossover_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/global_recombinations/global_uniform_crossover_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/global_recombinations_rb.html +131 -0
- data/docs/rdoc/files/lib/evosynth/operators/meta_operators/conditional_combined_operator_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/meta_operators/proportional_combined_operator_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/meta_operators/sequential_combined_operator_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/meta_operators_rb.html +133 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/binary_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/efficient_binary_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/exchange_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/flip_functions_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/gauss_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/identity_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/inversion_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/mixing_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/one_gene_flipping_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/self_adaptive_gauss_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/shifting_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations/uniform_real_mutation_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/mutations_rb.html +151 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations/arithmetic_crossover_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations/edge_recombination_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations/identity_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations/k_point_crossover_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations/one_point_crossover_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations/ordered_recombination_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations/partially_mapped_crossover_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations/uniform_crossover_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/recombinations_rb.html +143 -0
- data/docs/rdoc/files/lib/evosynth/operators/selections/best_selection_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/selections/fitness_proportional_selection_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/selections/identity_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/selections/n_stage_tournament_selection_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/selections/random_selection_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/selections/roulette_wheel_selection_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/selections/tournament_selection_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/operators/selections_rb.html +141 -0
- data/docs/rdoc/files/lib/evosynth/operators_rb.html +139 -0
- data/docs/rdoc/files/lib/evosynth/output/console_writer_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/output/exporter/csv_exporter_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/output/exporter/gnuplot_exporter_rb.html +131 -0
- data/docs/rdoc/files/lib/evosynth/output/exporter/gruff_exporter_rb.html +131 -0
- data/docs/rdoc/files/lib/evosynth/output/exporter_rb.html +133 -0
- data/docs/rdoc/files/lib/evosynth/output/factory_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/output/logger_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/output_rb.html +135 -0
- data/docs/rdoc/files/lib/evosynth/problems/binary_benchmark_functions_rb.html +119 -0
- data/docs/rdoc/files/lib/evosynth/problems/float_benchmark_functions_rb.html +1630 -0
- data/docs/rdoc/files/lib/evosynth/problems/graph_colouring_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/problems/tsp_rb.html +129 -0
- data/docs/rdoc/files/lib/evosynth/problems_rb.html +135 -0
- data/docs/rdoc/files/lib/evosynth_rb.html +139 -0
- data/docs/rdoc/fr_class_index.html +245 -0
- data/docs/rdoc/fr_file_index.html +233 -0
- data/docs/rdoc/fr_method_index.html +661 -0
- data/docs/rdoc/index.html +21 -0
- data/docs/rdoc/rdoc-style.css +299 -0
- data/examples/ants.rb +237 -0
- data/examples/ccga_example.rb +150 -0
- data/examples/cmb_example.rb +117 -0
- data/examples/evolution_strategies.rb +84 -0
- data/examples/exporter.rb +90 -0
- data/examples/graph_colouring.rb +72 -0
- data/examples/hacking.rb +62 -0
- data/examples/local_search.rb +109 -0
- data/examples/max_ones.rb +83 -0
- data/examples/partition.rb +172 -0
- data/examples/spk.rb +106 -0
- data/examples/tsp.rb +83 -0
- data/lib/evosynth.rb +32 -0
- data/lib/evosynth/core.rb +33 -0
- data/lib/evosynth/core/array_genome.rb +77 -0
- data/lib/evosynth/core/binary_genome.rb +156 -0
- data/lib/evosynth/core/evaluator.rb +109 -0
- data/lib/evosynth/core/individual.rb +92 -0
- data/lib/evosynth/core/maximizing_individual.rb +71 -0
- data/lib/evosynth/core/minimizing_individual.rb +71 -0
- data/lib/evosynth/core/population.rb +120 -0
- data/lib/evosynth/core/profile.rb +110 -0
- data/lib/evosynth/core/randomizer.rb +73 -0
- data/lib/evosynth/decoder.rb +33 -0
- data/lib/evosynth/decoder/binary_to_real.rb +57 -0
- data/lib/evosynth/decoder/gray.rb +54 -0
- data/lib/evosynth/evolvers.rb +41 -0
- data/lib/evosynth/evolvers/basic/genetic_algorithm.rb +92 -0
- data/lib/evosynth/evolvers/basic/hillclimber.rb +64 -0
- data/lib/evosynth/evolvers/basic/memetic_algorithm.rb +111 -0
- data/lib/evosynth/evolvers/basic/population_hillclimber.rb +69 -0
- data/lib/evosynth/evolvers/basic/steady_state_ga.rb +85 -0
- data/lib/evosynth/evolvers/coevolutionary/balanced_coevolutionary.rb +125 -0
- data/lib/evosynth/evolvers/coevolutionary/round_robin_coevolutionary.rb +87 -0
- data/lib/evosynth/evolvers/elitism.rb +108 -0
- data/lib/evosynth/evolvers/evolution_strategies/adaptive_es.rb +104 -0
- data/lib/evosynth/evolvers/evolution_strategies/derandomized_es.rb +120 -0
- data/lib/evosynth/evolvers/evolution_strategies/selfadaptive_es.rb +82 -0
- data/lib/evosynth/evolvers/evolver.rb +43 -0
- data/lib/evosynth/evolvers/local_search/acceptance_great_deluge.rb +60 -0
- data/lib/evosynth/evolvers/local_search/acceptance_hillclimber.rb +47 -0
- data/lib/evosynth/evolvers/local_search/acceptance_record_to_record.rb +69 -0
- data/lib/evosynth/evolvers/local_search/acceptance_simulated_annealing.rb +59 -0
- data/lib/evosynth/evolvers/local_search/acceptance_threshold.rb +60 -0
- data/lib/evosynth/evolvers/local_search/local_search.rb +74 -0
- data/lib/evosynth/evolvers/profile_using_evolver.rb +77 -0
- data/lib/evosynth/evolvers/runnable_evolver.rb +89 -0
- data/lib/evosynth/operators.rb +30 -0
- data/lib/evosynth/operators/adjustments.rb +26 -0
- data/lib/evosynth/operators/adjustments/adaptive_adjustment.rb +55 -0
- data/lib/evosynth/operators/adjustments/predefined_adjustment.rb +46 -0
- data/lib/evosynth/operators/global_recombinations.rb +26 -0
- data/lib/evosynth/operators/global_recombinations/global_arithmetic_crossover.rb +50 -0
- data/lib/evosynth/operators/global_recombinations/global_uniform_crossover.rb +49 -0
- data/lib/evosynth/operators/meta_operators.rb +36 -0
- data/lib/evosynth/operators/meta_operators/conditional_combined_operator.rb +65 -0
- data/lib/evosynth/operators/meta_operators/proportional_combined_operator.rb +84 -0
- data/lib/evosynth/operators/meta_operators/sequential_combined_operator.rb +73 -0
- data/lib/evosynth/operators/mutations.rb +47 -0
- data/lib/evosynth/operators/mutations/binary_mutation.rb +100 -0
- data/lib/evosynth/operators/mutations/efficient_binary_mutation.rb +105 -0
- data/lib/evosynth/operators/mutations/exchange_mutation.rb +107 -0
- data/lib/evosynth/operators/mutations/flip_functions.rb +45 -0
- data/lib/evosynth/operators/mutations/gauss_mutation.rb +65 -0
- data/lib/evosynth/operators/mutations/identity.rb +62 -0
- data/lib/evosynth/operators/mutations/inversion_mutation.rb +73 -0
- data/lib/evosynth/operators/mutations/mixing_mutation.rb +75 -0
- data/lib/evosynth/operators/mutations/one_gene_flipping.rb +89 -0
- data/lib/evosynth/operators/mutations/self_adaptive_gauss_mutation.rb +73 -0
- data/lib/evosynth/operators/mutations/shifting_mutation.rb +88 -0
- data/lib/evosynth/operators/mutations/uniform_real_mutation.rb +59 -0
- data/lib/evosynth/operators/recombinations.rb +48 -0
- data/lib/evosynth/operators/recombinations/arithmetic_crossover.rb +67 -0
- data/lib/evosynth/operators/recombinations/edge_recombination.rb +108 -0
- data/lib/evosynth/operators/recombinations/identity.rb +42 -0
- data/lib/evosynth/operators/recombinations/k_point_crossover.rb +81 -0
- data/lib/evosynth/operators/recombinations/one_point_crossover.rb +56 -0
- data/lib/evosynth/operators/recombinations/ordered_recombination.rb +75 -0
- data/lib/evosynth/operators/recombinations/partially_mapped_crossover.rb +102 -0
- data/lib/evosynth/operators/recombinations/uniform_crossover.rb +54 -0
- data/lib/evosynth/operators/selections.rb +31 -0
- data/lib/evosynth/operators/selections/best_selection.rb +54 -0
- data/lib/evosynth/operators/selections/fitness_proportional_selection.rb +83 -0
- data/lib/evosynth/operators/selections/identity.rb +48 -0
- data/lib/evosynth/operators/selections/n_stage_tournament_selection.rb +84 -0
- data/lib/evosynth/operators/selections/random_selection.rb +44 -0
- data/lib/evosynth/operators/selections/roulette_wheel_selection.rb +54 -0
- data/lib/evosynth/operators/selections/tournament_selection.rb +71 -0
- data/lib/evosynth/output.rb +28 -0
- data/lib/evosynth/output/console_writer.rb +45 -0
- data/lib/evosynth/output/exporter.rb +27 -0
- data/lib/evosynth/output/exporter/csv_exporter.rb +62 -0
- data/lib/evosynth/output/exporter/gnuplot_exporter.rb +81 -0
- data/lib/evosynth/output/exporter/gruff_exporter.rb +70 -0
- data/lib/evosynth/output/factory.rb +38 -0
- data/lib/evosynth/output/logger.rb +83 -0
- data/lib/evosynth/problems.rb +37 -0
- data/lib/evosynth/problems/binary_benchmark_functions.rb +74 -0
- data/lib/evosynth/problems/float_benchmark_functions.rb +99 -0
- data/lib/evosynth/problems/graph_colouring.rb +89 -0
- data/lib/evosynth/problems/tsp.rb +88 -0
- data/test/benchmark/decoder_benchmark.rb +75 -0
- data/test/benchmark/mutation_benchmark.rb +88 -0
- data/test/benchmark/recombination_benchmark.rb +58 -0
- data/test/benchmark/selection_benchmark.rb +52 -0
- data/test/core/tc_array_genome.rb +154 -0
- data/test/core/tc_binary_genome.rb +160 -0
- data/test/core/tc_population.rb +154 -0
- data/test/core/tc_profile.rb +75 -0
- data/test/core/tc_randomizer.rb +165 -0
- data/test/coverage.rb +43 -0
- data/test/decoder/tc_binary_to_real.rb +52 -0
- data/test/decoder/tc_gray.rb +107 -0
- data/test/operators/adjustments/tc_adaptive_adjustment.rb +63 -0
- data/test/operators/adjustments/tc_predefined_adjustment.rb +49 -0
- data/test/operators/global_recombinations/tc_global_arithmetic_crossover.rb +78 -0
- data/test/operators/global_recombinations/tc_global_uniform_crossover.rb +90 -0
- data/test/operators/meta_operators/tc_conditional_combined_operator.rb +66 -0
- data/test/operators/meta_operators/tc_proportional_combined_operator.rb +167 -0
- data/test/operators/meta_operators/tc_sequential_combined_operator.rb +98 -0
- data/test/operators/mutations/tc_binary_mutation.rb +73 -0
- data/test/operators/mutations/tc_efficient_binary_mutation.rb +73 -0
- data/test/operators/mutations/tc_exchange_mutation.rb +127 -0
- data/test/operators/mutations/tc_gauss_mutation.rb +130 -0
- data/test/operators/mutations/tc_identity_mutation.rb +64 -0
- data/test/operators/mutations/tc_inversion_mutation.rb +70 -0
- data/test/operators/mutations/tc_mixing_mutation.rb +73 -0
- data/test/operators/mutations/tc_one_gene_flipping.rb +109 -0
- data/test/operators/mutations/tc_self_adaptive_gauss_mutation.rb +72 -0
- data/test/operators/mutations/tc_shifting_muation.rb +73 -0
- data/test/operators/mutations/tc_uniform_real_mutation.rb +65 -0
- data/test/operators/recombinations/tc_arithmetic_crossover.rb +79 -0
- data/test/operators/recombinations/tc_edge_recombination.rb +76 -0
- data/test/operators/recombinations/tc_identity_recombination.rb +81 -0
- data/test/operators/recombinations/tc_k_point_crossover.rb +81 -0
- data/test/operators/recombinations/tc_one_point_crossover.rb +80 -0
- data/test/operators/recombinations/tc_ordered_recombination.rb +76 -0
- data/test/operators/recombinations/tc_partially_mapped_crossover.rb +91 -0
- data/test/operators/recombinations/tc_uniform_crossover.rb +84 -0
- data/test/operators/selections/tc_best_selection.rb +85 -0
- data/test/operators/selections/tc_fitness_proportional_selection.rb +78 -0
- data/test/operators/selections/tc_identity.rb +91 -0
- data/test/operators/selections/tc_n_stage_tournament.rb +78 -0
- data/test/operators/selections/tc_random_selection.rb +70 -0
- data/test/operators/selections/tc_roulette_wheel_selection.rb +78 -0
- data/test/operators/selections/tc_tournament_selection.rb +83 -0
- data/test/problems/tc_binary_benchmark_functions.rb +126 -0
- data/test/problems/tc_float_benchmark_functions.rb +100 -0
- data/test/test_util/test_helper.rb +128 -0
- data/test/ts_adjustments.rb +26 -0
- data/test/ts_core.rb +29 -0
- data/test/ts_decoder.rb +26 -0
- data/test/ts_global_recombinations.rb +26 -0
- data/test/ts_meta_operators.rb +27 -0
- data/test/ts_mutations.rb +35 -0
- data/test/ts_problems.rb +26 -0
- data/test/ts_recombinations.rb +32 -0
- data/test/ts_selections.rb +31 -0
- data/testdata/README +4 -0
- data/testdata/bays29.tsp +68 -0
- data/testdata/myciel4.col +77 -0
- metadata +552 -0
data/test/coverage.rb
ADDED
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# Copyright (c) 2009, 2010 Yves Adler <yves.adler@googlemail.com>
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#
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# Permission is hereby granted, free of charge, to any person
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# obtaining a copy of this software and associated documentation
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# files (the "Software"), to deal in the Software without
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# restriction, including without limitation the rights to use,
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# copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the
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# Software is furnished to do so, subject to the following
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# conditions:
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#
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# The above copyright notice and this permission notice shall be
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# included in all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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# OTHER DEALINGS IN THE SOFTWARE.
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def add_path_to_load_path(path)
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filename = File.dirname(__FILE__)
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pathname = File.expand_path(File.join(filename, path))
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$LOAD_PATH.unshift(pathname) unless $LOAD_PATH.include?(pathname)
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end
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add_path_to_load_path('../lib')
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add_path_to_load_path('.')
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require 'ts_adjustments'
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require 'ts_core'
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require 'ts_global_recombinations'
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require 'ts_mutations'
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require 'ts_mutations'
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require 'ts_recombinations'
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require 'ts_selections'
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require 'ts_util'
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# Copyright (c) 2009, 2010 Yves Adler <yves.adler@googlemail.com>
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#
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# Permission is hereby granted, free of charge, to any person
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# obtaining a copy of this software and associated documentation
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# files (the "Software"), to deal in the Software without
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# restriction, including without limitation the rights to use,
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# copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the
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# Software is furnished to do so, subject to the following
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# conditions:
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#
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# The above copyright notice and this permission notice shall be
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# included in all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
|
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# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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# OTHER DEALINGS IN THE SOFTWARE.
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require 'shoulda'
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require 'evosynth'
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class BinaryToRealTest < Test::Unit::TestCase
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should "decode [0,0,0,0,0] to lower bound" do
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binary = [0,0,0,0,0]
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assert_equal -5, EvoSynth::Decoder.binary_to_real(binary, -5.0, 5.0)
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end
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should "decode [1,1,1,1,1] to upper bound" do
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binary = [1,1,1,1,1]
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assert_equal 5, EvoSynth::Decoder.binary_to_real(binary, -5, 5)
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end
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should "decode [true,false,false,false,false] to lower bound" do
|
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binary = [false,false,false,false,false]
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assert_equal -5, EvoSynth::Decoder.binary_to_real(binary, -5.0, 5.0)
|
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45
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end
|
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46
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|
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47
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should "decode [true,true,true,true,true] to upper bound" do
|
|
48
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binary = [true,true,true,true,true]
|
|
49
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assert_equal 5, EvoSynth::Decoder.binary_to_real(binary, -5, 5)
|
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50
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end
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51
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52
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end
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@@ -0,0 +1,107 @@
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# Copyright (c) 2009, 2010 Yves Adler <yves.adler@googlemail.com>
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#
|
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3
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# Permission is hereby granted, free of charge, to any person
|
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4
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# obtaining a copy of this software and associated documentation
|
|
5
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+
# files (the "Software"), to deal in the Software without
|
|
6
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+
# restriction, including without limitation the rights to use,
|
|
7
|
+
# copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
8
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+
# copies of the Software, and to permit persons to whom the
|
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9
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+
# Software is furnished to do so, subject to the following
|
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10
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+
# conditions:
|
|
11
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+
#
|
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12
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+
# The above copyright notice and this permission notice shall be
|
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13
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+
# included in all copies or substantial portions of the Software.
|
|
14
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+
#
|
|
15
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+
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
|
16
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+
# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
|
|
17
|
+
# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
|
18
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+
# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
|
|
19
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+
# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
|
|
20
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+
# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
|
|
21
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+
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
|
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+
# OTHER DEALINGS IN THE SOFTWARE.
|
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23
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24
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25
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require 'shoulda'
|
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26
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27
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require 'evosynth'
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28
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29
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30
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class GrayDecoderTest < Test::Unit::TestCase
|
|
31
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+
|
|
32
|
+
should "decode gray to standard binary (on 1,0)" do
|
|
33
|
+
assert_equal [0,0,0,0], EvoSynth::Decoder.gray_to_binary([0,0,0,0])
|
|
34
|
+
assert_equal [0,0,0,1], EvoSynth::Decoder.gray_to_binary([0,0,0,1])
|
|
35
|
+
assert_equal [0,0,1,0], EvoSynth::Decoder.gray_to_binary([0,0,1,1])
|
|
36
|
+
assert_equal [0,0,1,1], EvoSynth::Decoder.gray_to_binary([0,0,1,0])
|
|
37
|
+
assert_equal [0,1,0,0], EvoSynth::Decoder.gray_to_binary([0,1,1,0])
|
|
38
|
+
assert_equal [0,1,0,1], EvoSynth::Decoder.gray_to_binary([0,1,1,1])
|
|
39
|
+
assert_equal [0,1,1,0], EvoSynth::Decoder.gray_to_binary([0,1,0,1])
|
|
40
|
+
assert_equal [0,1,1,1], EvoSynth::Decoder.gray_to_binary([0,1,0,0])
|
|
41
|
+
assert_equal [1,0,0,0], EvoSynth::Decoder.gray_to_binary([1,1,0,0])
|
|
42
|
+
assert_equal [1,0,0,1], EvoSynth::Decoder.gray_to_binary([1,1,0,1])
|
|
43
|
+
assert_equal [1,0,1,0], EvoSynth::Decoder.gray_to_binary([1,1,1,1])
|
|
44
|
+
assert_equal [1,0,1,1], EvoSynth::Decoder.gray_to_binary([1,1,1,0])
|
|
45
|
+
assert_equal [1,1,0,0], EvoSynth::Decoder.gray_to_binary([1,0,1,0])
|
|
46
|
+
assert_equal [1,1,0,1], EvoSynth::Decoder.gray_to_binary([1,0,1,1])
|
|
47
|
+
assert_equal [1,1,1,0], EvoSynth::Decoder.gray_to_binary([1,0,0,1])
|
|
48
|
+
assert_equal [1,1,1,1], EvoSynth::Decoder.gray_to_binary([1,0,0,0])
|
|
49
|
+
end
|
|
50
|
+
|
|
51
|
+
should "decode standard binary to gray (on 1,0)" do
|
|
52
|
+
assert_equal [0,0,0,0], EvoSynth::Decoder.binary_to_gray([0,0,0,0])
|
|
53
|
+
assert_equal [0,0,0,1], EvoSynth::Decoder.binary_to_gray([0,0,0,1])
|
|
54
|
+
assert_equal [0,0,1,1], EvoSynth::Decoder.binary_to_gray([0,0,1,0])
|
|
55
|
+
assert_equal [0,0,1,0], EvoSynth::Decoder.binary_to_gray([0,0,1,1])
|
|
56
|
+
assert_equal [0,1,1,0], EvoSynth::Decoder.binary_to_gray([0,1,0,0])
|
|
57
|
+
assert_equal [0,1,1,1], EvoSynth::Decoder.binary_to_gray([0,1,0,1])
|
|
58
|
+
assert_equal [0,1,0,1], EvoSynth::Decoder.binary_to_gray([0,1,1,0])
|
|
59
|
+
assert_equal [0,1,0,0], EvoSynth::Decoder.binary_to_gray([0,1,1,1])
|
|
60
|
+
assert_equal [1,1,0,0], EvoSynth::Decoder.binary_to_gray([1,0,0,0])
|
|
61
|
+
assert_equal [1,1,0,1], EvoSynth::Decoder.binary_to_gray([1,0,0,1])
|
|
62
|
+
assert_equal [1,1,1,1], EvoSynth::Decoder.binary_to_gray([1,0,1,0])
|
|
63
|
+
assert_equal [1,1,1,0], EvoSynth::Decoder.binary_to_gray([1,0,1,1])
|
|
64
|
+
assert_equal [1,0,1,0], EvoSynth::Decoder.binary_to_gray([1,1,0,0])
|
|
65
|
+
assert_equal [1,0,1,1], EvoSynth::Decoder.binary_to_gray([1,1,0,1])
|
|
66
|
+
assert_equal [1,0,0,1], EvoSynth::Decoder.binary_to_gray([1,1,1,0])
|
|
67
|
+
assert_equal [1,0,0,0], EvoSynth::Decoder.binary_to_gray([1,1,1,1])
|
|
68
|
+
end
|
|
69
|
+
|
|
70
|
+
should "decode gray to standard binary (on true,false)" do
|
|
71
|
+
assert_equal [false,false,false,false], EvoSynth::Decoder.gray_to_binary([false,false,false,false])
|
|
72
|
+
assert_equal [false,false,false,true], EvoSynth::Decoder.gray_to_binary([false,false,false,true])
|
|
73
|
+
assert_equal [false,false,true,false], EvoSynth::Decoder.gray_to_binary([false,false,true,true])
|
|
74
|
+
assert_equal [false,false,true,true], EvoSynth::Decoder.gray_to_binary([false,false,true,false])
|
|
75
|
+
assert_equal [false,true,false,false], EvoSynth::Decoder.gray_to_binary([false,true,true,false])
|
|
76
|
+
assert_equal [false,true,false,true], EvoSynth::Decoder.gray_to_binary([false,true,true,true])
|
|
77
|
+
assert_equal [false,true,true,false], EvoSynth::Decoder.gray_to_binary([false,true,false,true])
|
|
78
|
+
assert_equal [false,true,true,true], EvoSynth::Decoder.gray_to_binary([false,true,false,false])
|
|
79
|
+
assert_equal [true,false,false,false], EvoSynth::Decoder.gray_to_binary([true,true,false,false])
|
|
80
|
+
assert_equal [true,false,false,true], EvoSynth::Decoder.gray_to_binary([true,true,false,true])
|
|
81
|
+
assert_equal [true,false,true,false], EvoSynth::Decoder.gray_to_binary([true,true,true,true])
|
|
82
|
+
assert_equal [true,false,true,true], EvoSynth::Decoder.gray_to_binary([true,true,true,false])
|
|
83
|
+
assert_equal [true,true,false,false], EvoSynth::Decoder.gray_to_binary([true,false,true,false])
|
|
84
|
+
assert_equal [true,true,false,true], EvoSynth::Decoder.gray_to_binary([true,false,true,true])
|
|
85
|
+
assert_equal [true,true,true,false], EvoSynth::Decoder.gray_to_binary([true,false,false,true])
|
|
86
|
+
assert_equal [true,true,true,true], EvoSynth::Decoder.gray_to_binary([true,false,false,false])
|
|
87
|
+
end
|
|
88
|
+
|
|
89
|
+
should "decode standard binary to gray (on true,false)" do
|
|
90
|
+
assert_equal [false,false,false,false], EvoSynth::Decoder.binary_to_gray([false,false,false,false])
|
|
91
|
+
assert_equal [false,false,false,true], EvoSynth::Decoder.binary_to_gray([false,false,false,true])
|
|
92
|
+
assert_equal [false,false,true,true], EvoSynth::Decoder.binary_to_gray([false,false,true,false])
|
|
93
|
+
assert_equal [false,false,true,false], EvoSynth::Decoder.binary_to_gray([false,false,true,true])
|
|
94
|
+
assert_equal [false,true,true,false], EvoSynth::Decoder.binary_to_gray([false,true,false,false])
|
|
95
|
+
assert_equal [false,true,true,true], EvoSynth::Decoder.binary_to_gray([false,true,false,true])
|
|
96
|
+
assert_equal [false,true,false,true], EvoSynth::Decoder.binary_to_gray([false,true,true,false])
|
|
97
|
+
assert_equal [false,true,false,false], EvoSynth::Decoder.binary_to_gray([false,true,true,true])
|
|
98
|
+
assert_equal [true,true,false,false], EvoSynth::Decoder.binary_to_gray([true,false,false,false])
|
|
99
|
+
assert_equal [true,true,false,true], EvoSynth::Decoder.binary_to_gray([true,false,false,true])
|
|
100
|
+
assert_equal [true,true,true,true], EvoSynth::Decoder.binary_to_gray([true,false,true,false])
|
|
101
|
+
assert_equal [true,true,true,false], EvoSynth::Decoder.binary_to_gray([true,false,true,true])
|
|
102
|
+
assert_equal [true,false,true,false], EvoSynth::Decoder.binary_to_gray([true,true,false,false])
|
|
103
|
+
assert_equal [true,false,true,true], EvoSynth::Decoder.binary_to_gray([true,true,false,true])
|
|
104
|
+
assert_equal [true,false,false,true], EvoSynth::Decoder.binary_to_gray([true,true,true,false])
|
|
105
|
+
assert_equal [true,false,false,false], EvoSynth::Decoder.binary_to_gray([true,true,true,true])
|
|
106
|
+
end
|
|
107
|
+
end
|
|
@@ -0,0 +1,63 @@
|
|
|
1
|
+
# Copyright (c) 2009, 2010 Yves Adler <yves.adler@googlemail.com>
|
|
2
|
+
#
|
|
3
|
+
# Permission is hereby granted, free of charge, to any person
|
|
4
|
+
# obtaining a copy of this software and associated documentation
|
|
5
|
+
# files (the "Software"), to deal in the Software without
|
|
6
|
+
# restriction, including without limitation the rights to use,
|
|
7
|
+
# copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
8
|
+
# copies of the Software, and to permit persons to whom the
|
|
9
|
+
# Software is furnished to do so, subject to the following
|
|
10
|
+
# conditions:
|
|
11
|
+
#
|
|
12
|
+
# The above copyright notice and this permission notice shall be
|
|
13
|
+
# included in all copies or substantial portions of the Software.
|
|
14
|
+
#
|
|
15
|
+
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
|
16
|
+
# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
|
|
17
|
+
# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
|
18
|
+
# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
|
|
19
|
+
# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
|
|
20
|
+
# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
|
|
21
|
+
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
|
|
22
|
+
# OTHER DEALINGS IN THE SOFTWARE.
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
require 'shoulda'
|
|
26
|
+
|
|
27
|
+
require 'evosynth'
|
|
28
|
+
require 'test/test_util/test_helper'
|
|
29
|
+
|
|
30
|
+
|
|
31
|
+
class AdaptiveAjustmentTest < Test::Unit::TestCase
|
|
32
|
+
|
|
33
|
+
ALPHA = 0.9
|
|
34
|
+
THETA = 0.2
|
|
35
|
+
|
|
36
|
+
context "a adaptive adjustment with alpha = #{ALPHA}, theta = #{THETA}" do
|
|
37
|
+
setup do
|
|
38
|
+
@adjustment = EvoSynth::Adjustments::AdaptiveAdjustment.new(ALPHA, THETA)
|
|
39
|
+
end
|
|
40
|
+
|
|
41
|
+
should "divide a value with #{ALPHA} when adjust is called without success_rate" do
|
|
42
|
+
sigma = 1
|
|
43
|
+
assert_equal sigma / ALPHA, @adjustment.adjust(sigma)
|
|
44
|
+
sigma = 3
|
|
45
|
+
assert_equal sigma / ALPHA, @adjustment.adjust(sigma)
|
|
46
|
+
end
|
|
47
|
+
|
|
48
|
+
should "divide a value with #{ALPHA} when adjust is called with a success_rate > #{THETA}" do
|
|
49
|
+
sigma = 1
|
|
50
|
+
assert_equal sigma * ALPHA, @adjustment.adjust(sigma, THETA*2)
|
|
51
|
+
sigma = 3
|
|
52
|
+
assert_equal sigma * ALPHA, @adjustment.adjust(sigma, THETA*2)
|
|
53
|
+
end
|
|
54
|
+
|
|
55
|
+
should "return the given value when success_rate == #{THETA}" do
|
|
56
|
+
sigma = 1
|
|
57
|
+
assert_equal sigma, @adjustment.adjust(sigma, THETA)
|
|
58
|
+
sigma = 3
|
|
59
|
+
assert_equal sigma, @adjustment.adjust(sigma, THETA)
|
|
60
|
+
end
|
|
61
|
+
end
|
|
62
|
+
|
|
63
|
+
end
|
|
@@ -0,0 +1,49 @@
|
|
|
1
|
+
# Copyright (c) 2009, 2010 Yves Adler <yves.adler@googlemail.com>
|
|
2
|
+
#
|
|
3
|
+
# Permission is hereby granted, free of charge, to any person
|
|
4
|
+
# obtaining a copy of this software and associated documentation
|
|
5
|
+
# files (the "Software"), to deal in the Software without
|
|
6
|
+
# restriction, including without limitation the rights to use,
|
|
7
|
+
# copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
8
|
+
# copies of the Software, and to permit persons to whom the
|
|
9
|
+
# Software is furnished to do so, subject to the following
|
|
10
|
+
# conditions:
|
|
11
|
+
#
|
|
12
|
+
# The above copyright notice and this permission notice shall be
|
|
13
|
+
# included in all copies or substantial portions of the Software.
|
|
14
|
+
#
|
|
15
|
+
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
|
16
|
+
# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
|
|
17
|
+
# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
|
18
|
+
# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
|
|
19
|
+
# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
|
|
20
|
+
# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
|
|
21
|
+
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
|
|
22
|
+
# OTHER DEALINGS IN THE SOFTWARE.
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
require 'shoulda'
|
|
26
|
+
|
|
27
|
+
require 'evosynth'
|
|
28
|
+
require 'test/test_util/test_helper'
|
|
29
|
+
|
|
30
|
+
|
|
31
|
+
class PredefinedAjustmentTest < Test::Unit::TestCase
|
|
32
|
+
|
|
33
|
+
ALPHA = 0.9
|
|
34
|
+
|
|
35
|
+
context "a predefined adjustment with alpha = #{ALPHA}" do
|
|
36
|
+
setup do
|
|
37
|
+
@adjustment = EvoSynth::Adjustments::PredifinedAdjustment.new(ALPHA)
|
|
38
|
+
end
|
|
39
|
+
|
|
40
|
+
should "multiply a value with #{ALPHA} when adjust is called" do
|
|
41
|
+
sigma = 1
|
|
42
|
+
assert_equal sigma * ALPHA, @adjustment.adjust(sigma)
|
|
43
|
+
sigma = 3
|
|
44
|
+
assert_equal sigma * ALPHA, @adjustment.adjust(sigma)
|
|
45
|
+
end
|
|
46
|
+
|
|
47
|
+
end
|
|
48
|
+
|
|
49
|
+
end
|
|
@@ -0,0 +1,78 @@
|
|
|
1
|
+
# Copyright (c) 2009, 2010 Yves Adler <yves.adler@googlemail.com>
|
|
2
|
+
#
|
|
3
|
+
# Permission is hereby granted, free of charge, to any person
|
|
4
|
+
# obtaining a copy of this software and associated documentation
|
|
5
|
+
# files (the "Software"), to deal in the Software without
|
|
6
|
+
# restriction, including without limitation the rights to use,
|
|
7
|
+
# copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
8
|
+
# copies of the Software, and to permit persons to whom the
|
|
9
|
+
# Software is furnished to do so, subject to the following
|
|
10
|
+
# conditions:
|
|
11
|
+
#
|
|
12
|
+
# The above copyright notice and this permission notice shall be
|
|
13
|
+
# included in all copies or substantial portions of the Software.
|
|
14
|
+
#
|
|
15
|
+
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
|
16
|
+
# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
|
|
17
|
+
# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
|
18
|
+
# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
|
|
19
|
+
# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
|
|
20
|
+
# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
|
|
21
|
+
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
|
|
22
|
+
# OTHER DEALINGS IN THE SOFTWARE.
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
require 'shoulda'
|
|
26
|
+
|
|
27
|
+
require 'evosynth'
|
|
28
|
+
require 'test/test_util/test_helper'
|
|
29
|
+
|
|
30
|
+
|
|
31
|
+
class GlobalArithmeticCrossoverTest < Test::Unit::TestCase
|
|
32
|
+
|
|
33
|
+
GENOME_SIZE = 100
|
|
34
|
+
TIMES = 1000
|
|
35
|
+
DELTA = 0.01
|
|
36
|
+
|
|
37
|
+
context "when run on binary genome (size=#{GENOME_SIZE})" do
|
|
38
|
+
setup do
|
|
39
|
+
@population = EvoSynth::Population.new
|
|
40
|
+
individual_one = TestArrayGenomeIndividual.new([1.0]*GENOME_SIZE)
|
|
41
|
+
individual_two = TestArrayGenomeIndividual.new([2.0]*GENOME_SIZE)
|
|
42
|
+
|
|
43
|
+
@population << individual_one << individual_two
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
context "before recombination is executed" do
|
|
47
|
+
should "all genes of individual one should be 1.0" do
|
|
48
|
+
@population[0].genome.each { |gene| assert_equal 1.0, gene }
|
|
49
|
+
end
|
|
50
|
+
|
|
51
|
+
should "all genes of individual two should be 2.0" do
|
|
52
|
+
@population[1].genome.each { |gene| assert_equal 2.0, gene }
|
|
53
|
+
end
|
|
54
|
+
end
|
|
55
|
+
|
|
56
|
+
context "after recombination is executed #{TIMES} times" do
|
|
57
|
+
setup do
|
|
58
|
+
recombination = EvoSynth::GlobalRecombinations::GlobalArithmeticCrossover.new
|
|
59
|
+
@child = recombination.recombine(@population)
|
|
60
|
+
end
|
|
61
|
+
|
|
62
|
+
should "all genes of the parent one should (still) be 1.0" do
|
|
63
|
+
@population[0].genome.each { |gene| assert_equal 1.0, gene }
|
|
64
|
+
end
|
|
65
|
+
|
|
66
|
+
should "all genes of the parent two should (still) be 2.0" do
|
|
67
|
+
@population[1].genome.each { |gene| assert_equal 2.0, gene }
|
|
68
|
+
end
|
|
69
|
+
|
|
70
|
+
should "all genes of the child should equal 0.5" do
|
|
71
|
+
@child.genome.each { |gene| assert_equal 1.5, gene }
|
|
72
|
+
end
|
|
73
|
+
|
|
74
|
+
end
|
|
75
|
+
|
|
76
|
+
end
|
|
77
|
+
|
|
78
|
+
end
|
|
@@ -0,0 +1,90 @@
|
|
|
1
|
+
# Copyright (c) 2009, 2010 Yves Adler <yves.adler@googlemail.com>
|
|
2
|
+
#
|
|
3
|
+
# Permission is hereby granted, free of charge, to any person
|
|
4
|
+
# obtaining a copy of this software and associated documentation
|
|
5
|
+
# files (the "Software"), to deal in the Software without
|
|
6
|
+
# restriction, including without limitation the rights to use,
|
|
7
|
+
# copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
8
|
+
# copies of the Software, and to permit persons to whom the
|
|
9
|
+
# Software is furnished to do so, subject to the following
|
|
10
|
+
# conditions:
|
|
11
|
+
#
|
|
12
|
+
# The above copyright notice and this permission notice shall be
|
|
13
|
+
# included in all copies or substantial portions of the Software.
|
|
14
|
+
#
|
|
15
|
+
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
|
16
|
+
# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
|
|
17
|
+
# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
|
18
|
+
# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
|
|
19
|
+
# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
|
|
20
|
+
# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
|
|
21
|
+
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
|
|
22
|
+
# OTHER DEALINGS IN THE SOFTWARE.
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
require 'shoulda'
|
|
26
|
+
|
|
27
|
+
require 'evosynth'
|
|
28
|
+
require 'test/test_util/test_helper'
|
|
29
|
+
|
|
30
|
+
|
|
31
|
+
class GlobalUniformCrossoverTest < Test::Unit::TestCase
|
|
32
|
+
|
|
33
|
+
GENOME_SIZE = 100
|
|
34
|
+
TIMES = 1000
|
|
35
|
+
DELTA = 0.01
|
|
36
|
+
|
|
37
|
+
context "when run on binary genome (size=#{GENOME_SIZE})" do
|
|
38
|
+
setup do
|
|
39
|
+
@population = EvoSynth::Population.new
|
|
40
|
+
individual_one = TestArrayBinaryIndividual.new(GENOME_SIZE)
|
|
41
|
+
individual_one.genome.map! { |gene| true }
|
|
42
|
+
individual_two = TestArrayBinaryIndividual.new(GENOME_SIZE)
|
|
43
|
+
individual_two.genome.map! { |gene| false }
|
|
44
|
+
|
|
45
|
+
@population << individual_one << individual_two
|
|
46
|
+
end
|
|
47
|
+
|
|
48
|
+
context "before recombination is executed" do
|
|
49
|
+
should "all genes of individual one should be true" do
|
|
50
|
+
@population[0].genome.each { |gene| assert gene }
|
|
51
|
+
end
|
|
52
|
+
|
|
53
|
+
should "all genes of individual two should be false" do
|
|
54
|
+
@population[1].genome.each { |gene| assert !gene }
|
|
55
|
+
end
|
|
56
|
+
end
|
|
57
|
+
|
|
58
|
+
context "after recombination is executed #{TIMES} times" do
|
|
59
|
+
setup do
|
|
60
|
+
recombination = EvoSynth::GlobalRecombinations::GlobalUniformCrossover.new
|
|
61
|
+
@count_false, @count_true = 0, 0
|
|
62
|
+
TIMES.times do
|
|
63
|
+
child = recombination.recombine(@population)
|
|
64
|
+
child.genome.each do |gene|
|
|
65
|
+
if gene == true
|
|
66
|
+
@count_true += 1
|
|
67
|
+
elsif gene == false
|
|
68
|
+
@count_false += 1
|
|
69
|
+
end
|
|
70
|
+
end
|
|
71
|
+
end
|
|
72
|
+
end
|
|
73
|
+
|
|
74
|
+
should "all genes of the parent one should (still) be true" do
|
|
75
|
+
@population[0].genome.each { |gene| assert gene }
|
|
76
|
+
end
|
|
77
|
+
|
|
78
|
+
should "all genes of the parent two should (still) be false" do
|
|
79
|
+
@population[1].genome.each { |gene| assert !gene }
|
|
80
|
+
end
|
|
81
|
+
|
|
82
|
+
should "around 50% of the genes should have mutated to false" do
|
|
83
|
+
assert_in_delta((GENOME_SIZE/2)*TIMES, @count_true, DELTA * (GENOME_SIZE/2) * TIMES)
|
|
84
|
+
assert_in_delta((GENOME_SIZE/2)*TIMES, @count_false, DELTA * (GENOME_SIZE/2) * TIMES)
|
|
85
|
+
end
|
|
86
|
+
end
|
|
87
|
+
|
|
88
|
+
end
|
|
89
|
+
|
|
90
|
+
end
|