commonmeta-ruby 3.5.5 → 3.6

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Files changed (274) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +16 -5
  3. data/lib/commonmeta/readers/crossref_xml_reader.rb +1 -1
  4. data/lib/commonmeta/utils.rb +6 -6
  5. data/lib/commonmeta/version.rb +1 -1
  6. data/spec/cli_spec.rb +8 -8
  7. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/default.yml +13 -13
  8. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_bibtex.yml +13 -13
  9. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_crossref_xml.yml +25 -25
  10. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_datacite.yml +13 -13
  11. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_schema_org.yml +13 -13
  12. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/default.yml +7 -7
  13. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_bibtex.yml +7 -7
  14. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_crossref_xml.yml +7 -59
  15. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_datacite.yml +7 -7
  16. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_schema_org.yml +7 -7
  17. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/default.yml +24 -24
  18. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_bibtex.yml +24 -24
  19. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_citation.yml +24 -24
  20. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_crossref_xml.yml +24 -24
  21. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_datacite.yml +24 -24
  22. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_jats.yml +24 -24
  23. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_schema_org.yml +24 -24
  24. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/default.yml +16 -16
  25. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_bibtex.yml +16 -16
  26. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_citation.yml +16 -16
  27. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_datacite.yml +16 -16
  28. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_jats.yml +16 -16
  29. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_schema_org.yml +16 -16
  30. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/default.yml +479 -946
  31. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_crossref_xml.yml +957 -1891
  32. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_datacite.yml +479 -946
  33. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_schema_org.yml +481 -950
  34. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_blog.yml +5540 -968
  35. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_blog_unknown_blog_id.yml +22 -29
  36. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_id.yml +25 -39
  37. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_id_unknown_uuid.yml +18 -28
  38. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/crossref.yml +7 -7
  39. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/datacite.yml +7 -7
  40. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/jalc.yml +7 -7
  41. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/kisti.yml +7 -7
  42. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/medra.yml +7 -7
  43. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/op.yml +7 -7
  44. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_blog_id.yml +19 -90
  45. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_by_blog.yml +5578 -246
  46. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_not_indexed.yml +13 -2201
  47. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_unregistered.yml +176 -72
  48. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +16 -16
  49. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/crossref.yml +6 -6
  50. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/datacite.yml +6 -6
  51. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/jalc.yml +6 -6
  52. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/kisti.yml +6 -6
  53. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/medra.yml +6 -6
  54. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/not_found.yml +6 -6
  55. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/op.yml +6 -6
  56. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref.yml +6 -6
  57. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +6 -6
  58. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite.yml +6 -6
  59. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite_doi_http.yml +6 -6
  60. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +6 -6
  61. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/by_blog_post_id.yml +27 -105
  62. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/not_found.yml +20 -27
  63. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/cff-converter-python.yml +51 -25
  64. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff.yml +12 -12
  65. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff_repository_url.yml +9 -9
  66. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/maremma.yml +10 -10
  67. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/metadata_reports.yml +11 -11
  68. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +78 -78
  69. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +76 -76
  70. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +35 -35
  71. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/JaLC.yml +162 -162
  72. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/KISTI.yml +131 -131
  73. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/OP.yml +75 -75
  74. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/affiliation_is_space.yml +76 -76
  75. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book.yml +113 -113
  76. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book_chapter.yml +74 -74
  77. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/article_id_as_page_number.yml +77 -77
  78. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/author_literal.yml +84 -84
  79. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book.yml +77 -77
  80. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter.yml +75 -75
  81. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +73 -73
  82. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_oup.yml +72 -72
  83. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/component.yml +94 -94
  84. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset.yml +104 -104
  85. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset_usda.yml +136 -136
  86. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/date_in_future.yml +80 -80
  87. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dissertation.yml +103 -103
  88. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/empty_given_name.yml +75 -75
  89. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/invalid_date.yml +77 -77
  90. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article.yml +76 -76
  91. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_original_language_title.yml +73 -73
  92. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with.yml +128 -210
  93. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_RDF_for_container.yml +74 -74
  94. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_funding.yml +76 -76
  95. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_issue.yml +72 -72
  96. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/mEDRA.yml +72 -72
  97. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/markup.yml +81 -81
  98. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/missing_contributor.yml +71 -71
  99. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_issn.yml +75 -75
  100. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles.yml +71 -71
  101. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +573 -573
  102. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/not_found_error.yml +65 -65
  103. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/peer_review.yml +77 -77
  104. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content.yml +74 -74
  105. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content_copernicus.yml +76 -76
  106. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/report_osti.yml +120 -120
  107. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/vor_with_url.yml +78 -78
  108. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book.yml +74 -74
  109. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book_chapter.yml +73 -73
  110. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_raw/journal_article.yml +59 -59
  111. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/SoftwareSourceCode.yml +4 -4
  112. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/dissertation.yml +13 -13
  113. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/funding_references.yml +15 -15
  114. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/subject_scheme.yml +120 -120
  115. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_id.yml +5540 -555
  116. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_id.yml +31 -42
  117. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_id_specific_prefix.yml +25 -39
  118. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/by_blog_id.yml +5540 -247
  119. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/not_indexed_posts.yml +14 -26
  120. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/unregistered_posts.yml +176 -72
  121. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/archived_wordpress_post.yml +27 -95
  122. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blog_post_with_non-url_id.yml +28 -106
  123. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +21 -65
  124. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +20 -208
  125. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +26 -97
  126. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_institutional_author.yml +24 -55
  127. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_organizational_author.yml +27 -70
  128. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers.yml +41 -143
  129. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers_and_funding.yml +54 -132
  130. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers_and_link_to_peer-reviewed_article.yml +304 -818
  131. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +24 -169
  132. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +24 -63
  133. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post_with_anonymous_author.yml +25 -40
  134. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/substack_post_with_broken_reference.yml +278 -591
  135. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +59 -101
  136. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +135 -331
  137. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +24 -134
  138. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_many_references.yml +578 -2967
  139. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +44 -205
  140. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_tracking_code_on_url.yml +26 -160
  141. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/affiliation_is_space.yml +21 -21
  142. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_familyName.yml +15 -15
  143. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml +13 -13
  144. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/name_with_affiliation_crossref.yml +16 -16
  145. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/only_familyName_and_givenName.yml +66 -61
  146. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting.yml +145 -146
  147. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting_with_new_DOI.yml +149 -150
  148. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/get_schema_org_metadata_front_matter/BlogPosting.yml +114 -115
  149. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/harvard_dataverse.yml +300 -289
  150. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/pangaea.yml +66 -61
  151. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/upstream_blog.yml +64 -57
  152. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/zenodo.yml +27 -24
  153. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml +6 -6
  154. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/unknown_DOI_prefix.yml +6 -6
  155. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_schema_errors/is_valid.yml +16 -16
  156. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/BlogPosting.yml +10 -10
  157. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/Dataset.yml +10 -10
  158. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +16 -16
  159. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/climate_data.yml +10 -10
  160. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/from_schema_org.yml +145 -146
  161. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +8 -8
  162. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/maremma.yml +12 -12
  163. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/text.yml +8 -8
  164. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_data_citation.yml +16 -16
  165. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_pages.yml +16 -16
  166. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml +13 -13
  167. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml +13 -13
  168. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml +8 -8
  169. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/ruby-cff.yml +10 -10
  170. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Dataset.yml +10 -10
  171. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article.yml +16 -16
  172. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +21 -21
  173. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Missing_author.yml +15 -15
  174. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +8 -8
  175. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/software_w/version.yml +8 -8
  176. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +8 -8
  177. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +8 -8
  178. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_commonmeta/with_data_citation.yml +12 -12
  179. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml +32 -32
  180. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article.yml +5 -5
  181. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_from_datacite.yml +5 -5
  182. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_plos.yml +16 -16
  183. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_anonymous_author.yml +25 -40
  184. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +24 -134
  185. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_organizational_author.yml +27 -70
  186. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_relations.yml +41 -143
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  194. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Another_dataset.yml +8 -8
  195. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/BlogPosting.yml +10 -10
  196. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/BlogPosting_schema_org.yml +146 -147
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  201. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/keywords_subject_scheme.yml +8 -8
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  207. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/software_w/version.yml +8 -8
  208. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/with_only_first_page.yml +16 -16
  209. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/with_pages.yml +16 -16
  210. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/climate_data.yml +10 -10
  211. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/maremma.yml +10 -10
  212. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/text.yml +8 -8
  213. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/with_data_citation.yml +16 -16
  214. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/with_pages.yml +16 -16
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48
- it compose?","summary":"One question I have increasingly asked myself in the
49
- past few years. Meaning Can I run this open source software  using Docker
50
- containers and a Docker Compose file? As the Docker project turned ten this
51
- spring, it has become standard practice to distribute open source software
52
- via Docker images and to provide a Docker Compose file to run the software
53
- together with other dependencies.","content_html":" <p><img src=\"https://images.unsplash.com/photo-1523351964962-1ee5847816c3?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDUzfHxjb250YWluZXJ8ZW58MHx8fHwxNjg0MjMyMTQ0fDA&amp;ixlib=rb-4.0.3&amp;q=80&amp;w=2000\"
54
- /></p><p>One question I have increasingly asked myself in the past few years.
55
- Meaning </p><blockquote>Can I run this open source software  using Docker
56
- containers and a Docker Compose file?</blockquote><p>As the Docker project
57
- <a href=\"https://snyk.io/blog/the-docker-project-turns-10/\">turned ten this
58
- spring</a>, it has become standard practice to distribute open source software
59
- via Docker images and to provide a <a href=\"https://docs.docker.com/compose/\">Docker
60
- Compose</a> file to run the software together with other dependencies. The
61
- <a href=\"https://github.com/docker/awesome-compose\">Awesome Compose</a>
62
- project has collected many examples, and all you need is a <code>docker-compose.yml</code>file
63
- and a recent installation of Docker, e.g. <a href=\"https://www.docker.com/products/docker-desktop/\">Docker
64
- Desktop</a>. Be aware that Docker Compose has evolved over the years. It started
65
- out as a dedicated Python application but was later integrated into the Docker
66
- application (written in Go) as Compose V2.</p><p>Docker and Docker Compose
67
- allow you to run pretty complex applications without first addressing a long
68
- list of requirements (which might conflict with other software you have installed),
69
- or needing a long and complex build step where many things can go wrong. For
70
- example a self-hosted instance of Supabase (a hosted Postgres database with
71
- additional features) that I installed last week following <a href=\"https://supabase.com/docs/guides/self-hosting/docker\">these
72
- instructions</a>.</p><p>An important open source project that I am involved
73
- in is <a href=\"https://inveniordm.docs.cern.ch/\">InvenioRDM</a>, the turn-key
74
- research data management repository. InvenioRDM started in 2019, with a first
75
- production-suitable version in August 2021, and the <a href=\"https://inveniosoftware.org/products/rdm/#status\">next
76
- major goal </a>is to have the large and popular <a href=\"https://zenodo.org/\">Zenodo</a>
77
- repository running on top of InvenioRDM. Zenodo <a href=\"https://blog.zenodo.org/2023/05/08/2023-05-08-10years/\">turned
78
- ten last week</a>, a few weeks after Docker. Interestingly, my personal tenth
79
- anniversary was last year in May as I became a full-time software developer
80
- and left academic medicine as a medical doctor treating cancer patients in
81
- <a href=\"https://doi.org/10.53731/r294649-6f79289-8cw2j\">May 2012</a>.</p><p>Unfortunately,
82
- InvenioRDM \"doesn''t compose\" yet. It is very close, but there are no ready-made
83
- Docker images to download, and the <a href=\"https://inveniordm.docs.cern.ch/install/\">installation
84
- instructions</a> start with installing a Python command-line tool (invenio-cli).
85
- So if you have 1-2 hours to play with InvenioRDM and get a first impression,
86
- there is no official solution from the InvenioRDM project yet. For this reason,
87
- I started the <a href=\"https://github.com/front-matter/docker-invenio-rdm\">docker-invenio-rdm</a>
88
- repository on Github. It contains a Docker Compose file that uses pre-built
89
- Docker images, and using that file with a <code>docker compose up</code>command
90
- on your local computer should give you a running InvenioRDM within 15 minutes:</p><figure><img
91
- src=\"https://blog.front-matter.io/content/images/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png\"
92
- loading=\"lazy\" width=\"2000\" height=\"1210\" srcset=\"https://blog.front-matter.io/content/images/size/w600/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png
93
- 600w, https://blog.front-matter.io/content/images/size/w1000/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png
94
- 1000w, https://blog.front-matter.io/content/images/size/w1600/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png
95
- 1600w, https://blog.front-matter.io/content/images/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png
96
- 2193w\" /></figure><p>I started this recently and obviously want to move forward
97
- in two directions:</p><ul><li>fine-tune the initial configuration to provide
98
- a great initial experience with InvenioRDM, e.g. making it easy to <a href=\"https://inveniordm.docs.cern.ch/develop/topics/theming/\">theme</a>
99
- the InvenioRDM instance</li><li>make this an official part of the InvenioRDM
100
- project, extending the <a href=\"https://github.com/inveniosoftware/docker-invenio\">docker-invenio</a>
101
- GitHub repository that provides Docker base images for InvenioRDM and other
102
- projects using the Invenio software.</li></ul><p>But of course, Docker Compose
103
- is not the answer to all questions regarding running Docker-based infrastructure.
104
- For production environments, most people shy away from using Docker Compose.
105
- The reasons for that and the alternatives will be the topic of a future blog
106
- post (spoiler: there is exciting news).</p><p>Docker Compose also needs more
107
- work to be set up correctly for development environments. It is a common practice
108
- and a workflow I used while working at DataCite (where we launched Docker-based
109
- infrastructure in 2016), but for now, the easiest way to set up InvenioRDM
110
- development environments is using the <a href=\"https://inveniordm.docs.cern.ch/install/\">invenio-cli
111
- tool with a local development environment</a>.</p><p>Please reach out to me
112
- with feedback on running Docker Compose for InvenioRDM (use the <a href=\"https://github.com/front-matter/docker-invenio-rdm/discussions\">discussions</a>
113
- feature in the GitHub repo), or if you have questions about running InvenioRDM
114
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41
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43
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44
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45
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46
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83
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84
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85
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86
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