commonmeta-ruby 3.5.5 → 3.6

data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_turtle/journal_article.yml

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:{"last-status-check-time":1696462065724,"affiliations":0.9377096736876763,"abstracts":0.8011336839388843,"orcids":0.9218167418599891,"licenses":1.0,"references":0.9910034971568915,"funders":0.5168317360313943,"similarity-checking":0.9999822027639108,"award-numbers":0.4433825426911201,"ror-ids":0.0,"update-policies":0.1822970892620376,"resource-links":0.9999822027639108,"descriptions":0.0},"journal-issue":{"last-status-check-time":1696462065724,"affiliations":0.0,"abstracts":0.0,"orcids":0.0,"licenses":0.0,"references":0.0,"funders":0.0,"similarity-checking":0.0,"award-numbers":0.0,"ror-ids":0.0,"update-policies":0.0,"resource-links":0.0,"descriptions":0.0}}},"flags":{"deposits-abstracts-current":true,"deposits-orcids-current":true,"deposits":true,"deposits-affiliations-backfile":true,"deposits-update-policies-backfile":true,"deposits-similarity-checking-backfile":true,"deposits-award-numbers-current":true,"deposits-resource-links-current":true,"deposits-ror-ids-current":false,"deposits-articles":true,"deposits-affiliations-current":true,"deposits-funders-current":true,"deposits-references-backfile":true,"deposits-ror-ids-backfile":false,"deposits-abstracts-backfile":true,"deposits-licenses-backfile":true,"deposits-award-numbers-backfile":true,"deposits-descriptions-current":false,"deposits-references-current":true,"deposits-resource-links-backfile":true,"deposits-descriptions-backfile":false,"deposits-orcids-backfile":true,"deposits-funders-backfile":true,"deposits-update-policies-current":true,"deposits-similarity-checking-current":true,"deposits-licenses-current":true},"location":"London,
         United Kingdom","names":["Hindawi Limited","Hindawi (Datasets International)","Hindawi
         (The Scientific World)","Hindawi (International Scholarly Research Network)","Hindawi
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         Access to Research)","Hindawi (Scientifica)","Hindawi Publishing Corporation
         (Syrexe)"]}}'
-  recorded_at: Sun, 18 Jun 2023 15:23:24 GMT
+  recorded_at: Thu, 05 Oct 2023 19:47:08 GMT
 - request:
     method: get
     uri: https://doi.org/ra/10.1155
     body:
-      encoding: UTF-8
+      encoding: ASCII-8BIT
       string: ''
     headers:
       Connection:
@@ -192,7 +192,7 @@ http_interactions:
       message: OK
     headers:
       Date:
-      - Sun, 18 Jun 2023 15:23:24 GMT
+      - Thu, 05 Oct 2023 19:47:09 GMT
       Content-Type:
       - application/json;charset=UTF-8
       Transfer-Encoding:
@@ -204,7 +204,7 @@ http_interactions:
       Cf-Cache-Status:
       - DYNAMIC
       Report-To:
-      - '{"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report\/v3?s=5k3LQrJJxPt4QFyRa0z9DA3mrhNCGTyvBkVZCYZS67aBJ9iwdMuF5sAHZhf44ZxTrA9iPEIEEAZ1URys9U0wNpdT4Q6oumR9K3rp%2BGMAMgAMpzk75C9NeEnuGQQSg6EaalMLPzo%3D"}],"group":"cf-nel","max_age":604800}'
+      - '{"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report\/v3?s=5DaM5MHY4vKEiVDBHej0gpW8BL3GmdUhtuZE8ycquSlaiAuupj9lkkbt9JQZ9w4jXZr9zrrwxOQn8yIPArMGrztgRgFj5HkPE29JOaJQxJooBzHiCIH9sDfe6Yo3csaEC6zEvhI%3D"}],"group":"cf-nel","max_age":604800}'
       Nel:
       - '{"success_fraction":0,"report_to":"cf-nel","max_age":604800}'
       Strict-Transport-Security:
@@ -212,7 +212,7 @@ http_interactions:
       Server:
       - cloudflare
       Cf-Ray:
-      - 7d948886c86b0bab-AMS
+      - 81182cbd5ffa0b46-AMS
       Alt-Svc:
       - h3=":443"; ma=86400
     body:
@@ -224,5 +224,5 @@ http_interactions:
             "RA": "Crossref"
           }
         ]
-  recorded_at: Sun, 18 Jun 2023 15:23:24 GMT
-recorded_with: VCR 6.1.0
+  recorded_at: Thu, 05 Oct 2023 19:47:09 GMT
+recorded_with: VCR 6.2.0

data/spec/readers/cff_reader_spec.rb

@@ -42,30 +42,12 @@ describe Commonmeta::Metadata, vcr: true do
       input = "https://github.com/citation-file-format/cff-converter-python/blob/main/CITATION.cff"
       subject = described_class.new(input: input)
       expect(subject.id).to eq("https://doi.org/10.5281/zenodo.1162057")
-      expect(subject.url).to eq("https://github.com/citation-file-format/cff-converter-python")
+      expect(subject.url).to eq("https://github.com/citation-file-format/cffconvert")
       expect(subject.type).to eq("Software")
       expect(subject.contributors).to eq([{ "affiliation" => [{ "name" => "Netherlands eScience Center" }],
                                             "familyName" => "Spaaks",
                                             "givenName" => "Jurriaan H.",
                                             "id" => "https://orcid.org/0000-0002-7064-4069",
-                                            "type" => "Person", "contributorRoles" => ["Author"] },
-                                          { "affiliation" => [{ "name" => "Netherlands eScience Center" }],
-                                            "familyName" => "Klaver",
-                                            "givenName" => "Tom",
-                                            "type" => "Person", "contributorRoles" => ["Author"] },
-                                          { "affiliation" => [{ "name" => "Netherlands eScience Center" }],
-                                            "familyName" => "Verhoeven",
-                                            "id" => "https://orcid.org/0000-0002-5821-2060",
-                                            "givenName" => "Stefan",
-                                            "type" => "Person", "contributorRoles" => ["Author"] },
-                                          { "affiliation" => [{ "name" => "Humboldt-Universität zu Berlin" }],
-                                            "familyName" => "Druskat",
-                                            "givenName" => "Stephan",
-                                            "id" => "https://orcid.org/0000-0003-4925-7248",
-                                            "type" => "Person", "contributorRoles" => ["Author"] },
-                                          { "affiliation" => [{ "name" => "University of Oslo" }],
-                                            "familyName" => "Leoncio",
-                                            "givenName" => "Waldir",
                                             "type" => "Person", "contributorRoles" => ["Author"] }])
       expect(subject.titles).to eq([{ "title" => "cffconvert" }])
       expect(subject.descriptions.first["description"]).to start_with("Command line program to validate and convert CITATION.cff files")
@@ -78,7 +60,7 @@ describe Commonmeta::Metadata, vcr: true do
                                       { "subject" => "Endnote" },
                                       { "subject" => "Ris" },
                                       { "subject" => "Citation file format" }])
-      expect(subject.version).to eq("2.0.0")
+      expect(subject.version).to eq("3.0.0a0")
       expect(subject.date).to eq("published" => "2021-09-22")
       expect(subject.publisher).to eq("name" => "GitHub")
       expect(subject.license).to eq("id" => "Apache-2.0", "url" => "http://www.apache.org/licenses/LICENSE-2.0")

data/spec/readers/crossref_reader_spec.rb

@@ -328,6 +328,7 @@ describe Commonmeta::Metadata, vcr: true do
       expect(subject.references.length).to eq(98)
       expect(subject.references.first).to eq("containerTitle" => "J. Immunol",
                                              "contributor" => "Allen",
+                                             "doi" => "https://doi.org/10.4049/jimmunol.160.12.6062",
                                              "firstPage" => "6062",
                                              "key" => "10.1016/j.ejphar.2015.03.018_bib1",
                                              "publicationYear" => "1998",
@@ -522,7 +523,7 @@ describe Commonmeta::Metadata, vcr: true do
       expect(subject.contributors).to eq([{ "type" => "Person", "contributorRoles" => ["Author"], "familyName" => "Leung",
                                             "givenName" => "Vincent S." }])
       expect(subject.titles).to eq([{ "title" => "The Politics of the Past in Early China" }])
-      expect(subject.date).to eq("published" => "2019-07-01", "updated" => "2022-09-22")
+      expect(subject.date).to eq("published" => "2019-07-01", "updated" => "2023-09-17")
       expect(subject.publisher).to eq("id" => "https://api.crossref.org/members/56",
                                       "name" => "Cambridge University Press (CUP)")
       expect(subject.provider).to eq("Crossref")
@@ -732,29 +733,22 @@ describe Commonmeta::Metadata, vcr: true do
       subject = described_class.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.1111/nph.14619")
-      expect(subject.url).to eq("https://onlinelibrary.wiley.com/doi/10.1111/nph.14619")
+      expect(subject.url).to eq("https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.14619")
       expect(subject.type).to eq("JournalArticle")
       expect(subject.contributors.length).to eq(3)
-      expect(subject.contributors.first).to eq("affiliation" => [{ "name" => "Independent Junior Research Group on Protein Recognition and Degradation; Leibniz Institute of Plant Biochemistry (IPB); Weinberg 3 Halle (Saale) D-06120 Germany" }, { "name" => "ScienceCampus Halle - Plant-based Bioeconomy; Betty-Heimann-Strasse 3 Halle (Saale) D-06120 Germany" }],
+      expect(subject.contributors.first).to eq("affiliation" => [{"name"=>"Independent Junior Research Group on Protein Recognition and Degradation Leibniz Institute of Plant Biochemistry (IPB) Weinberg 3 Halle (Saale) D‐06120 Germany"}, {"name"=>"ScienceCampus Halle – Plant‐based Bioeconomy Betty‐Heimann‐Strasse 3 Halle (Saale) D‐06120 Germany"}],
                                                "familyName" => "Dissmeyer",
                                                "givenName" => "Nico",
                                                "id" => "https://orcid.org/0000-0002-4156-3761",
                                                "type" => "Person", "contributorRoles" => ["Author"])
-      expect(subject.titles).to eq([{ "title" => "Life and death of proteins after protease cleavage: protein degradation by the N-end rule pathway" }])
-      expect(subject.license).to eq("url" => "http://doi.wiley.com/10.1002/tdm_license_1.1")
-      expect(subject.date).to eq("published" => "2017-06-05", "updated" => "2021-07-07")
+      expect(subject.titles).to eq([{ "title" => "Life and death of proteins after protease cleavage: protein degradation by the N‐end rule pathway" }])
+      expect(subject.license).to eq("url" => "http://onlinelibrary.wiley.com/termsAndConditions#vor")
+      expect(subject.date).to eq("published" => "2017-06-05", "updated" => "2023-09-12")
       expect(subject.publisher).to eq("id" => "https://api.crossref.org/members/311",
                                       "name" => "Wiley")
       expect(subject.references.length).to eq(49)
-      expect(subject.references.last).to eq("containerTitle" => "Proteomics",
-                                            "contributor" => "Zhang",
-                                            "doi" => "https://doi.org/10.1002/pmic.201400530",
-                                            "firstPage" => "2447",
-                                            "key" => "10.1111/nph.14619-BIB0049|nph14619-cit-0049",
-                                            "publicationYear" => "2015",
-                                            "title" => "Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots",
-                                            "volume" => "15")
-      expect(subject.container).to eq("firstPage" => "929", "identifier" => "0028-646X",
+      expect(subject.references.last).to eq("doi"=>"https://doi.org/10.1002/pmic.201400530", "key"=>"e_1_2_7_50_1")
+      expect(subject.container).to eq("firstPage" => "929", "identifier" => "1469-8137",
                                       "identifierType" => "ISSN", "issue" => "3", "lastPage" => "935", "title" => "New Phytologist", "type" => "Journal", "volume" => "218")
       expect(subject.provider).to eq("Crossref")
     end
@@ -795,7 +789,7 @@ describe Commonmeta::Metadata, vcr: true do
     it "multiple issn" do
       input = "https://doi.org/10.1007/978-3-642-34922-5_19"
       subject = described_class.new(input: input)
-      #  expect(subject.valid?).to be true
+      expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.1007/978-3-642-34922-5_19")
       expect(subject.url).to eq("https://link.springer.com/10.1007/978-3-642-34922-5_19")
       expect(subject.type).to eq("BookChapter")