bio 1.0.0 → 1.1.0

data/test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb

@@ -0,0 +1,299 @@
+#
+# test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb - Unit test for Bio::RestrictionEnzyme::Analysis::CalculatedCuts
+#
+# Author::    Trevor Wennblom  <mailto:trevor@corevx.com>
+# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+# License::   The Ruby License
+#
+#  $Id: test_calculated_cuts.rb,v 1.4 2007/04/05 23:35:44 trevor Exp $
+#
+
+require 'pathname'
+libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 6, 'lib')).cleanpath.to_s
+$:.unshift(libpath) unless $:.include?(libpath)
+
+require 'test/unit'
+require 'bio/util/restriction_enzyme/range/sequence_range/calculated_cuts'
+require 'bio/util/restriction_enzyme/range/cut_range'
+require 'bio/util/restriction_enzyme/range/cut_ranges'
+require 'bio/util/restriction_enzyme/range/horizontal_cut_range'
+require 'bio/util/restriction_enzyme/range/vertical_cut_range'
+
+module Bio #:nodoc:
+
+class TestAnalysisCalculatedCuts < Test::Unit::TestCase #:nodoc:
+
+  def setup
+    @t = Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
+    @vcr = Bio::RestrictionEnzyme::Range::VerticalCutRange
+    @crs = Bio::RestrictionEnzyme::Range::CutRanges
+    @hcr = Bio::RestrictionEnzyme::Range::HorizontalCutRange
+
+    #a.add_cut_range(p_cut_left, p_cut_right, c_cut_left, c_cut_right )
+
+    @obj_1 = @t.new(6)
+    @obj_1.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(0,nil,nil,3), @vcr.new(nil,2,nil,nil)] ))
+    @obj_1b = @obj_1.dup
+    @obj_1b.remove_incomplete_cuts
+
+    @obj_2 = @t.new(6)
+    @obj_2.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(0,2,nil,nil), @vcr.new(3,nil,4,nil)] ))
+    @obj_2b = @obj_2.dup
+    @obj_2b.remove_incomplete_cuts
+
+    @obj_3 = @t.new(6)
+    @obj_3.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(0,2,nil,nil), @vcr.new(3,nil,4,nil)] ))
+    @obj_3.add_cuts_from_cut_ranges( @crs.new( [@hcr.new(0), @hcr.new(5)] ))
+    @obj_3b = @obj_3.dup
+    @obj_3b.remove_incomplete_cuts
+
+    @obj_4 = @t.new(6)
+    @obj_4.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(0,2,1,3)] ))
+    @obj_4b = @obj_4.dup
+    @obj_4b.remove_incomplete_cuts
+
+    # Same thing, declared a different way
+    @obj_4_c1 = @t.new(6)
+    @obj_4_c1.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(nil,nil,1,3), @vcr.new(0,2,nil,nil)] ))
+    @obj_4b_c1 = @obj_4_c1.dup
+    @obj_4b_c1.remove_incomplete_cuts
+
+    # Same thing, declared a different way
+    @obj_4_c2 = @t.new(6)
+    @obj_4_c2.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(0,nil,nil,3), @vcr.new(nil,2,1,nil)] ))
+    @obj_4b_c2 = @obj_4_c2.dup
+    @obj_4b_c2.remove_incomplete_cuts
+
+    @obj_5 = @t.new(6)
+    @obj_5.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(0,nil,nil,nil), @vcr.new(nil,4,3,nil), @hcr.new(1,2)] ))
+    @obj_5b = @obj_5.dup
+    @obj_5b.remove_incomplete_cuts
+
+    @obj_6 = @t.new(6)
+    @obj_6.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(nil,nil,0,nil), @hcr.new(1,2), @vcr.new(nil,4,3,nil)] ))
+    @obj_6b = @obj_6.dup
+    @obj_6b.remove_incomplete_cuts
+
+    @obj_7 = @t.new(6)
+    @obj_7.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(nil,2,nil,nil), @hcr.new(0,2)] ))
+    @obj_7b = @obj_7.dup
+    @obj_7b.remove_incomplete_cuts
+
+    @obj_8 = @t.new(12)
+    @obj_8.add_cuts_from_cut_ranges( @crs.new( [@hcr.new(0,1), @vcr.new(nil,nil,nil,5), @hcr.new(7,8), @hcr.new(10), @vcr.new(nil,10,nil,nil)] ))
+    @obj_8b = @obj_8.dup
+    @obj_8b.remove_incomplete_cuts
+
+    @obj_9 = @t.new(6)
+    @obj_9.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(nil,3,nil,3)] ))
+    @obj_9b = @obj_9.dup
+    @obj_9b.remove_incomplete_cuts
+
+    @obj_10 = @t.new(6)
+    @obj_10.add_cuts_from_cut_ranges( @crs.new( [@vcr.new(0,nil,nil,3), @vcr.new(nil,2,nil,2)] ))
+    @obj_10b = @obj_10.dup
+    @obj_10b.remove_incomplete_cuts
+
+
+  end
+
+  def test_cuts
+    x = @obj_1
+    assert_equal([0,2], x.vc_primary)
+    assert_equal([3], x.vc_complement)
+    assert_equal([1,2,3], x.hc_between_strands)
+
+    x = @obj_2
+    assert_equal([0,2,3], x.vc_primary)
+    assert_equal([4], x.vc_complement)
+    assert_equal([1,2,4], x.hc_between_strands)
+
+    x = @obj_3
+    assert_equal([0,2,3], x.vc_primary)
+    assert_equal([4], x.vc_complement)
+    assert_equal([0,1,2,4,5], x.hc_between_strands)
+
+    x = @obj_4
+    assert_equal([0,2], x.vc_primary)
+    assert_equal([1,3], x.vc_complement)
+    assert_equal([1,2,3], x.hc_between_strands)
+
+    x = @obj_4_c1
+    assert_equal([0,2], x.vc_primary)
+    assert_equal([1,3], x.vc_complement)
+    assert_equal([1,2,3], x.hc_between_strands)
+
+    x = @obj_4_c2
+    assert_equal([0,2], x.vc_primary)
+    assert_equal([1,3], x.vc_complement)
+    assert_equal([1,2,3], x.hc_between_strands)
+
+    x = @obj_5
+    assert_equal([0,4], x.vc_primary)
+    assert_equal([3], x.vc_complement)
+    assert_equal([1,2,4], x.hc_between_strands)
+
+    x = @obj_6
+    assert_equal([4], x.vc_primary)
+    assert_equal([0,3], x.vc_complement)
+    assert_equal([1,2,4], x.hc_between_strands)
+
+    x = @obj_7
+    assert_equal([2], x.vc_primary)
+    assert_equal([], x.vc_complement)
+    assert_equal([0,1,2], x.hc_between_strands)
+
+    x = @obj_8
+    assert_equal([10], x.vc_primary)
+    assert_equal([5], x.vc_complement)
+    assert_equal([0,1,7,8,10], x.hc_between_strands)
+
+    x = @obj_9
+    assert_equal([3], x.vc_primary)
+    assert_equal([3], x.vc_complement)
+    assert_equal([], x.hc_between_strands)
+
+    x = @obj_10
+    assert_equal([0,2], x.vc_primary)
+    assert_equal([2,3], x.vc_complement)
+    assert_equal([1,2,3], x.hc_between_strands)
+  end
+
+  def test_cuts_after_remove_incomplete_cuts
+    x = @obj_1b
+    assert_equal([0,2], x.vc_primary)
+    assert_equal([3], x.vc_complement)
+    assert_equal([1,2,3], x.hc_between_strands)
+  end
+
+  def test_strands_for_display_current
+  #check object_id
+  end
+
+  def test_strands_for_display
+    x = @obj_1
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +---+-+   ', x.strands_for_display[1])
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_1b
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +---+-+   ', x.strands_for_display[1])
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_2
+    assert_equal('0|1 2|3|4 5', x.strands_for_display[0])
+    assert_equal(' +---+ +-+ ', x.strands_for_display[1])
+    assert_equal('0 1 2 3 4|5', x.strands_for_display[2])
+
+    x = @obj_2b
+    assert_equal('0|1 2|3|4 5', x.strands_for_display[0])
+    assert_equal(' +---+ +-+ ', x.strands_for_display[1])
+    assert_equal('0 1 2 3 4|5', x.strands_for_display[2])
+
+    x = @obj_3
+    assert_equal('0|1 2|3|4 5', x.strands_for_display[0])
+    assert_equal('-+---+ +-+-', x.strands_for_display[1])
+    assert_equal('0 1 2 3 4|5', x.strands_for_display[2])
+
+    x = @obj_3b
+    assert_equal('0|1 2|3|4 5', x.strands_for_display[0])
+    assert_equal('-+---+ +-+-', x.strands_for_display[1])
+    assert_equal('0 1 2 3 4|5', x.strands_for_display[2])
+
+    x = @obj_4
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +-+-+-+   ', x.strands_for_display[1])
+    assert_equal('0 1|2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_4b
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +-+-+-+   ', x.strands_for_display[1])
+    assert_equal('0 1|2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_4_c1
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +-+-+-+   ', x.strands_for_display[1])
+    assert_equal('0 1|2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_4b_c1
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +-+-+-+   ', x.strands_for_display[1])
+    assert_equal('0 1|2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_4_c2
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +-+-+-+   ', x.strands_for_display[1])
+    assert_equal('0 1|2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_4b_c2
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +-+-+-+   ', x.strands_for_display[1])
+    assert_equal('0 1|2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_5
+    assert_equal('0|1 2 3 4|5', x.strands_for_display[0])
+    assert_equal(' +---  +-+ ', x.strands_for_display[1])
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_5b
+    assert_equal('0 1 2 3 4|5', x.strands_for_display[0])
+    assert_equal('       +-+ ', x.strands_for_display[1])
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_6
+    assert_equal('0 1 2 3 4|5', x.strands_for_display[0])
+    assert_equal(' +---  +-+ ', x.strands_for_display[1])
+    assert_equal('0|1 2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_6b
+    assert_equal('0 1 2 3 4|5', x.strands_for_display[0])
+    assert_equal('       +-+ ', x.strands_for_display[1])
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_7
+    assert_equal('0 1 2|3 4 5', x.strands_for_display[0])
+    assert_equal('-----+     ', x.strands_for_display[1])
+    assert_equal('0 1 2 3 4 5', x.strands_for_display[2])
+
+    x = @obj_7b
+    assert_equal('0 1 2|3 4 5', x.strands_for_display[0])
+    assert_equal('-----+     ', x.strands_for_display[1])
+    assert_equal('0 1 2 3 4 5', x.strands_for_display[2])
+
+    x = @obj_8
+    assert_equal('0 1 2 3 4 5 6 7 8 9 0|1', x.strands_for_display[0])
+    assert_equal('---        +  ---   -+ ', x.strands_for_display[1])
+    assert_equal('0 1 2 3 4 5|6 7 8 9 0 1', x.strands_for_display[2])
+
+    x = @obj_8b
+    assert_equal('0 1 2 3 4 5 6 7 8 9 0 1', x.strands_for_display[0])
+    assert_equal('                       ', x.strands_for_display[1])
+    assert_equal('0 1 2 3 4 5 6 7 8 9 0 1', x.strands_for_display[2])
+
+    x = @obj_9
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[0])
+    assert_equal('       +   ', x.strands_for_display[1])
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_9b
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[0])
+    assert_equal('       +   ', x.strands_for_display[1])
+    assert_equal('0 1 2 3|4 5', x.strands_for_display[2])
+
+    x = @obj_10
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +---+-+   ', x.strands_for_display[1])
+    assert_equal('0 1 2|3|4 5', x.strands_for_display[2])
+
+    x = @obj_10b
+    assert_equal('0|1 2|3 4 5', x.strands_for_display[0])
+    assert_equal(' +---+-+   ', x.strands_for_display[1])
+    assert_equal('0 1 2|3|4 5', x.strands_for_display[2])
+
+  end
+
+
+end
+
+end

data/test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb

@@ -0,0 +1,103 @@
+#
+# test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb - Unit test for Bio::RestrictionEnzyme::Analysis::SequenceRange
+#
+# Author::    Trevor Wennblom  <mailto:trevor@corevx.com>
+# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+# License::   The Ruby License
+#
+#  $Id: test_cut_ranges.rb,v 1.2 2007/04/05 23:35:44 trevor Exp $
+#
+
+require 'pathname'
+libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 6, 'lib')).cleanpath.to_s
+$:.unshift(libpath) unless $:.include?(libpath)
+
+require 'test/unit'
+require 'bio/util/restriction_enzyme/range/sequence_range'
+require 'bio/util/restriction_enzyme/range/sequence_range/fragments'
+
+require 'bio/util/restriction_enzyme/range/cut_range'
+require 'bio/util/restriction_enzyme/range/horizontal_cut_range'
+require 'bio/util/restriction_enzyme/range/vertical_cut_range'
+require 'bio/util/restriction_enzyme/range/cut_ranges'
+
+module Bio #:nodoc:
+
+class TestCutRanges < Test::Unit::TestCase #:nodoc:
+
+  def setup
+    @t = Bio::RestrictionEnzyme::Range::SequenceRange
+    @fs = Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
+    #a.add_cut_range(p_cut_left, p_cut_right, c_cut_left, c_cut_right )
+
+    @vcr = Bio::RestrictionEnzyme::Range::VerticalCutRange
+    @crs = Bio::RestrictionEnzyme::Range::CutRanges
+    @hcr = Bio::RestrictionEnzyme::Range::HorizontalCutRange
+    
+    @obj_2 = @crs.new( [@vcr.new(0,2,nil,nil), @vcr.new(3,nil,4,nil)] )
+    @obj_3 = @crs.new( [@vcr.new(0,2,nil,nil), @vcr.new(3,nil,4,nil), @hcr.new(0), @hcr.new(5)] )
+    @obj_7 = @crs.new( [@vcr.new(nil,2,nil,nil), @hcr.new(0,2)] )
+    @obj_z = @crs.new( [@vcr.new(nil,2,nil,5), @hcr.new(1,6)] )
+  end
+  
+  def test_obj_z
+    assert_equal(6, @obj_z.max)
+    assert_equal(1, @obj_z.min)
+
+    assert_equal(2, @obj_z.min_vertical)
+    assert_equal(5, @obj_z.max_vertical)
+    
+    assert_equal(true, @obj_z.include?(6))
+    assert_equal(true, @obj_z.include?(4))
+    assert_equal(true, @obj_z.include?(2))
+    assert_equal(false, @obj_z.include?(-1))
+    assert_equal(false, @obj_z.include?(0))
+    assert_equal(false, @obj_z.include?(7))  
+  end
+  
+  def test_obj_7
+    assert_equal(2, @obj_7.max)
+    assert_equal(0, @obj_7.min)
+
+    assert_equal(2, @obj_7.min_vertical)
+    assert_equal(2, @obj_7.max_vertical)
+    
+    assert_equal(true, @obj_7.include?(0))
+    assert_equal(true, @obj_7.include?(1))
+    assert_equal(true, @obj_7.include?(2))
+    assert_equal(false, @obj_7.include?(-1))
+    assert_equal(false, @obj_7.include?(3))  
+  end
+  
+  def test_obj_2
+    assert_equal(4, @obj_2.max)
+    assert_equal(0, @obj_2.min)
+    
+    assert_equal(0, @obj_2.min_vertical)
+    assert_equal(4, @obj_2.max_vertical)
+    
+    assert_equal(true, @obj_2.include?(0))
+    assert_equal(true, @obj_2.include?(1))
+    assert_equal(true, @obj_2.include?(3))
+    assert_equal(true, @obj_2.include?(4))
+    assert_equal(false, @obj_2.include?(-1))
+    assert_equal(false, @obj_2.include?(5))  
+  end
+  
+  def test_obj_3
+    assert_equal(5, @obj_3.max)
+    assert_equal(0, @obj_3.min)
+    
+    assert_equal(0, @obj_3.min_vertical)
+    assert_equal(4, @obj_3.max_vertical)
+    
+    assert_equal(true, @obj_3.include?(0))
+    assert_equal(true, @obj_3.include?(1))
+    assert_equal(true, @obj_3.include?(3))
+    assert_equal(true, @obj_3.include?(4))
+    assert_equal(true, @obj_3.include?(5))  
+    assert_equal(false, @obj_3.include?(-1))
+    assert_equal(false, @obj_3.include?(6))  
+  end
+end
+end

data/test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb

@@ -0,0 +1,240 @@
+#
+# test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb - Unit test for Bio::RestrictionEnzyme::Analysis::SequenceRange
+#
+# Author::    Trevor Wennblom  <mailto:trevor@corevx.com>
+# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+# License::   The Ruby License
+#
+#  $Id: test_sequence_range.rb,v 1.4 2007/04/05 23:35:44 trevor Exp $
+#
+
+require 'pathname'
+libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 6, 'lib')).cleanpath.to_s
+$:.unshift(libpath) unless $:.include?(libpath)
+
+require 'test/unit'
+require 'bio/util/restriction_enzyme/range/sequence_range'
+require 'bio/util/restriction_enzyme/range/sequence_range/fragments'
+
+require 'bio/util/restriction_enzyme/range/cut_range'
+require 'bio/util/restriction_enzyme/range/horizontal_cut_range'
+require 'bio/util/restriction_enzyme/range/vertical_cut_range'
+require 'bio/util/restriction_enzyme/range/cut_ranges'
+
+module Bio #:nodoc:
+
+class TestAnalysisSequenceRange < Test::Unit::TestCase #:nodoc:
+
+  def setup
+    @t = Bio::RestrictionEnzyme::Range::SequenceRange
+    @fs = Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
+    #a.add_cut_range(p_cut_left, p_cut_right, c_cut_left, c_cut_right )
+
+    @vcr = Bio::RestrictionEnzyme::Range::VerticalCutRange
+    @crs = Bio::RestrictionEnzyme::Range::CutRanges
+    @hcr = Bio::RestrictionEnzyme::Range::HorizontalCutRange
+
+    @obj_1 = @t.new(0,5)
+    @obj_1.add_cut_range(0,nil,nil,3)
+    @obj_1.add_cut_range(nil,2,nil,nil)
+
+    @obj_2 = @t.new(0,5)
+    @obj_2.add_cut_ranges( @crs.new( [@vcr.new(0,2,nil,nil), @vcr.new(3,nil,4,nil)] ))
+
+    @obj_3 = @t.new(0,5)
+    @obj_3.add_cut_ranges( @crs.new( [@vcr.new(0,2,nil,nil), @vcr.new(3,nil,4,nil)] ))
+    @obj_3.add_cut_ranges( @crs.new( [@hcr.new(0), @hcr.new(5)] ))
+
+    @obj_4 = @t.new(0,5)
+    @obj_4.add_cut_ranges( @crs.new( [@vcr.new(0,2,1,3)] ))
+
+    @obj_5 = @t.new(0,5)
+    @obj_5.add_cut_ranges( @crs.new( [@vcr.new(0,nil,nil,nil), @vcr.new(nil,4,3,nil), @hcr.new(1,2)] ))
+
+    @obj_6 = @t.new(0,5)
+    @obj_6.add_cut_ranges( @crs.new( [@vcr.new(nil,nil,0,nil), @hcr.new(1,2), @vcr.new(nil,4,3,nil)] ))
+
+    @obj_7 = @t.new(0,5)
+    @obj_7.add_cut_ranges( @crs.new( [@vcr.new(nil,2,nil,nil), @hcr.new(0,2)] ))
+
+    @obj_8 = @t.new(0,11)
+    @obj_8.add_cut_ranges( @crs.new( [@hcr.new(0,1), @vcr.new(nil,nil,nil,5), @hcr.new(7,8), @hcr.new(10), @vcr.new(nil,10,nil,nil)] ))
+
+    @obj_9 = @t.new(0,5)
+    @obj_9.add_cut_ranges( @crs.new( [@vcr.new(nil,3,nil,3)] ))
+
+    @obj_10 = @t.new(0,5)
+    @obj_10.add_cut_ranges( @crs.new( [@vcr.new(0,nil,nil,3), @vcr.new(nil,2,nil,2)] ))
+  end
+
+  def test_fragments
+    assert_equal(@fs, @obj_1.fragments.class)
+  end
+
+  # '0|1 2|3 4 5'
+  # ' +---+-+   '
+  # '0 1 2 3|4 5'
+  def test_fragments_for_display_1
+    x = @obj_1
+    assert_equal(3, x.fragments.for_display.size)
+
+    assert_equal('0   ', x.fragments.for_display[0].primary)
+    assert_equal('0123', x.fragments.for_display[0].complement)
+
+    assert_equal('12', x.fragments.for_display[1].primary)
+    assert_equal('  ', x.fragments.for_display[1].complement)
+
+    assert_equal('345', x.fragments.for_display[2].primary)
+    assert_equal(' 45', x.fragments.for_display[2].complement)
+  end
+
+  # '0|1 2|3|4 5'
+  # ' +---+ +-+ '
+  # '0 1 2 3 4|5'
+  def test_fragments_for_display_2
+    x = @obj_2
+    assert_equal(3, x.fragments.for_display.size)
+
+    assert_equal('0  3 ', x.fragments.for_display[0].primary)
+    assert_equal('01234', x.fragments.for_display[0].complement)
+
+    assert_equal('12', x.fragments.for_display[1].primary)
+    assert_equal('  ', x.fragments.for_display[1].complement)
+
+    assert_equal('45', x.fragments.for_display[2].primary)
+    assert_equal(' 5', x.fragments.for_display[2].complement)
+  end
+
+  # '0|1 2|3|4 5'
+  # '-+---+ +-+-'
+  # '0 1 2 3 4|5'
+  def test_fragments_for_display_3
+    x = @obj_3
+    assert_equal(5, x.fragments.for_display.size)
+
+    assert_equal('0', x.fragments.for_display[0].primary)
+    assert_equal(' ', x.fragments.for_display[0].complement)
+
+    assert_equal('   3 ', x.fragments.for_display[1].primary)
+    assert_equal('01234', x.fragments.for_display[1].complement)
+
+    assert_equal('12', x.fragments.for_display[2].primary)
+    assert_equal('  ', x.fragments.for_display[2].complement)
+
+    assert_equal('45', x.fragments.for_display[3].primary)
+    assert_equal('  ', x.fragments.for_display[3].complement)
+
+    assert_equal(' ', x.fragments.for_display[4].primary)
+    assert_equal('5', x.fragments.for_display[4].complement)
+  end
+
+  # '0|1 2|3 4 5'
+  # ' +-+-+-+   '
+  # '0 1|2 3|4 5'
+  def test_fragments_for_display_4
+    x = @obj_4
+    assert_equal(4, x.fragments.for_display.size)
+
+    assert_equal('0 ', x.fragments.for_display[0].primary)
+    assert_equal('01', x.fragments.for_display[0].complement)
+
+    assert_equal('12', x.fragments.for_display[1].primary)
+    assert_equal('  ', x.fragments.for_display[1].complement)
+
+    assert_equal('  ', x.fragments.for_display[2].primary)
+    assert_equal('23', x.fragments.for_display[2].complement)
+
+    assert_equal('345', x.fragments.for_display[3].primary)
+    assert_equal(' 45', x.fragments.for_display[3].complement)
+  end
+
+  # '0 1 2 3 4|5'
+  # '       +-+ '
+  # '0 1 2 3|4 5'
+  def test_fragments_for_display_5
+    x = @obj_5
+    assert_equal(2, x.fragments.for_display.size)
+
+    assert_equal('01234', x.fragments.for_display[0].primary)
+    assert_equal('0123 ', x.fragments.for_display[0].complement)
+
+    assert_equal(' 5', x.fragments.for_display[1].primary)
+    assert_equal('45', x.fragments.for_display[1].complement)
+  end
+
+  # '0 1 2 3 4|5'
+  # '       +-+ '
+  # '0 1 2 3|4 5'
+  def test_fragments_for_display_6
+    x = @obj_6
+    assert_equal(2, x.fragments.for_display.size)
+
+    assert_equal('01234', x.fragments.for_display[0].primary)
+    assert_equal('0123 ', x.fragments.for_display[0].complement)
+
+    assert_equal(' 5', x.fragments.for_display[1].primary)
+    assert_equal('45', x.fragments.for_display[1].complement)
+  end
+
+  # '0 1 2|3 4 5'
+  # '-----+     '
+  # '0 1 2 3 4 5'
+  def test_fragments_for_display_7
+    x = @obj_7
+    assert_equal(2, x.fragments.for_display.size)
+
+    assert_equal('012', x.fragments.for_display[0].primary)
+    assert_equal('   ', x.fragments.for_display[0].complement)
+
+    assert_equal('   345', x.fragments.for_display[1].primary)
+    assert_equal('012345', x.fragments.for_display[1].complement)
+  end
+
+
+  # '0 1 2 3 4 5 6 7 8 9 0 1'
+  # '                       '
+  # '0 1 2 3 4 5 6 7 8 9 0 1'
+  def test_fragments_for_display_8
+    x = @obj_8
+    assert_equal(1, x.fragments.for_display.size)
+
+    assert_equal('012345678901', x.fragments.for_display[0].primary)
+    assert_equal('012345678901', x.fragments.for_display[0].complement)
+  end
+
+  # '0 1 2 3|4 5'
+  # '       +   '
+  # '0 1 2 3|4 5'
+  def test_fragments_for_display_9
+    x = @obj_9
+    assert_equal(2, x.fragments.for_display.size)
+
+    assert_equal('0123', x.fragments.for_display[0].primary)
+    assert_equal('0123', x.fragments.for_display[0].complement)
+
+    assert_equal('45', x.fragments.for_display[1].primary)
+    assert_equal('45', x.fragments.for_display[1].complement)
+  end
+
+  # '0|1 2|3 4 5'
+  # ' +---+-+   '
+  # '0 1 2|3|4 5'
+  def test_fragments_for_display_10
+    x = @obj_10
+    assert_equal(4, x.fragments.for_display.size)
+
+    assert_equal('0  ', x.fragments.for_display[0].primary)
+    assert_equal('012', x.fragments.for_display[0].complement)
+
+    assert_equal('12', x.fragments.for_display[1].primary)
+    assert_equal('  ', x.fragments.for_display[1].complement)
+
+    assert_equal('345', x.fragments.for_display[2].primary)
+    assert_equal(' 45', x.fragments.for_display[2].complement)
+
+    assert_equal(' ', x.fragments.for_display[3].primary)
+    assert_equal('3', x.fragments.for_display[3].complement)
+  end
+
+end
+end