bio 1.0.0 → 1.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/bin/bioruby +14 -122
- data/bin/br_biofetch.rb +2 -2
- data/bin/br_bioflat.rb +2 -2
- data/bin/br_biogetseq.rb +2 -2
- data/bin/br_pmfetch.rb +3 -3
- data/doc/Changes-0.7.rd +77 -0
- data/doc/KEGG_API.rd +523 -232
- data/doc/KEGG_API.rd.ja +529 -207
- data/doc/Tutorial.rd +48 -11
- data/lib/bio.rb +59 -6
- data/lib/bio/alignment.rb +713 -103
- data/lib/bio/appl/bl2seq/report.rb +2 -18
- data/lib/bio/appl/blast.rb +108 -91
- data/lib/bio/appl/blast/format0.rb +33 -18
- data/lib/bio/appl/blast/format8.rb +6 -20
- data/lib/bio/appl/blast/report.rb +293 -429
- data/lib/bio/appl/blast/rexml.rb +8 -22
- data/lib/bio/appl/blast/wublast.rb +21 -12
- data/lib/bio/appl/blast/xmlparser.rb +180 -183
- data/lib/bio/appl/blat/report.rb +127 -30
- data/lib/bio/appl/clustalw.rb +87 -59
- data/lib/bio/appl/clustalw/report.rb +20 -22
- data/lib/bio/appl/emboss.rb +113 -20
- data/lib/bio/appl/fasta.rb +173 -198
- data/lib/bio/appl/fasta/format10.rb +244 -347
- data/lib/bio/appl/gcg/msf.rb +212 -0
- data/lib/bio/appl/gcg/seq.rb +195 -0
- data/lib/bio/appl/genscan/report.rb +5 -23
- data/lib/bio/appl/hmmer.rb +8 -45
- data/lib/bio/appl/hmmer/report.rb +2 -20
- data/lib/bio/appl/iprscan/report.rb +374 -0
- data/lib/bio/appl/mafft.rb +87 -50
- data/lib/bio/appl/mafft/report.rb +151 -44
- data/lib/bio/appl/muscle.rb +52 -0
- data/lib/bio/appl/phylip/alignment.rb +129 -0
- data/lib/bio/appl/phylip/distance_matrix.rb +96 -0
- data/lib/bio/appl/probcons.rb +41 -0
- data/lib/bio/appl/psort.rb +89 -96
- data/lib/bio/appl/psort/report.rb +6 -22
- data/lib/bio/appl/pts1.rb +263 -0
- data/lib/bio/appl/sim4.rb +26 -36
- data/lib/bio/appl/sim4/report.rb +2 -18
- data/lib/bio/appl/sosui/report.rb +5 -20
- data/lib/bio/appl/spidey/report.rb +2 -2
- data/lib/bio/appl/targetp/report.rb +4 -20
- data/lib/bio/appl/tcoffee.rb +55 -0
- data/lib/bio/appl/tmhmm/report.rb +4 -20
- data/lib/bio/command.rb +235 -64
- data/lib/bio/data/aa.rb +21 -26
- data/lib/bio/data/codontable.rb +2 -20
- data/lib/bio/data/na.rb +19 -4
- data/lib/bio/db.rb +27 -12
- data/lib/bio/db/aaindex.rb +2 -20
- data/lib/bio/db/embl/common.rb +4 -21
- data/lib/bio/db/embl/embl.rb +33 -85
- data/lib/bio/db/embl/sptr.rb +612 -302
- data/lib/bio/db/embl/swissprot.rb +10 -29
- data/lib/bio/db/embl/trembl.rb +10 -29
- data/lib/bio/db/embl/uniprot.rb +10 -29
- data/lib/bio/db/fantom.rb +15 -20
- data/lib/bio/db/fasta.rb +3 -3
- data/lib/bio/db/genbank/common.rb +37 -46
- data/lib/bio/db/genbank/ddbj.rb +6 -18
- data/lib/bio/db/genbank/genbank.rb +47 -186
- data/lib/bio/db/genbank/genpept.rb +4 -17
- data/lib/bio/db/genbank/refseq.rb +4 -17
- data/lib/bio/db/gff.rb +103 -35
- data/lib/bio/db/go.rb +4 -20
- data/lib/bio/db/kegg/brite.rb +26 -36
- data/lib/bio/db/kegg/compound.rb +81 -85
- data/lib/bio/db/kegg/drug.rb +98 -0
- data/lib/bio/db/kegg/enzyme.rb +133 -110
- data/lib/bio/db/kegg/expression.rb +2 -20
- data/lib/bio/db/kegg/genes.rb +208 -238
- data/lib/bio/db/kegg/genome.rb +164 -285
- data/lib/bio/db/kegg/glycan.rb +114 -157
- data/lib/bio/db/kegg/keggtab.rb +242 -303
- data/lib/bio/db/kegg/kgml.rb +117 -160
- data/lib/bio/db/kegg/orthology.rb +112 -0
- data/lib/bio/db/kegg/reaction.rb +54 -69
- data/lib/bio/db/kegg/taxonomy.rb +331 -0
- data/lib/bio/db/lasergene.rb +209 -0
- data/lib/bio/db/litdb.rb +3 -27
- data/lib/bio/db/medline.rb +228 -249
- data/lib/bio/db/nbrf.rb +3 -3
- data/lib/bio/db/newick.rb +510 -0
- data/lib/bio/db/nexus.rb +1854 -0
- data/lib/bio/db/pdb.rb +5 -17
- data/lib/bio/db/pdb/atom.rb +2 -18
- data/lib/bio/db/pdb/chain.rb +2 -18
- data/lib/bio/db/pdb/chemicalcomponent.rb +2 -18
- data/lib/bio/db/pdb/model.rb +2 -18
- data/lib/bio/db/pdb/pdb.rb +73 -34
- data/lib/bio/db/pdb/residue.rb +4 -20
- data/lib/bio/db/pdb/utils.rb +2 -18
- data/lib/bio/db/prosite.rb +403 -422
- data/lib/bio/db/rebase.rb +84 -40
- data/lib/bio/db/soft.rb +404 -0
- data/lib/bio/db/transfac.rb +5 -17
- data/lib/bio/feature.rb +106 -52
- data/lib/bio/io/das.rb +32 -42
- data/lib/bio/io/dbget.rb +2 -20
- data/lib/bio/io/ddbjxml.rb +77 -138
- data/lib/bio/io/ebisoap.rb +158 -0
- data/lib/bio/io/ensembl.rb +229 -0
- data/lib/bio/io/fastacmd.rb +89 -82
- data/lib/bio/io/fetch.rb +163 -96
- data/lib/bio/io/flatfile.rb +170 -73
- data/lib/bio/io/flatfile/bdb.rb +3 -16
- data/lib/bio/io/flatfile/index.rb +2 -2
- data/lib/bio/io/flatfile/indexer.rb +3 -2
- data/lib/bio/io/higet.rb +12 -31
- data/lib/bio/io/keggapi.rb +210 -269
- data/lib/bio/io/ncbisoap.rb +155 -0
- data/lib/bio/io/pubmed.rb +169 -147
- data/lib/bio/io/registry.rb +4 -20
- data/lib/bio/io/soapwsdl.rb +43 -38
- data/lib/bio/io/sql.rb +242 -305
- data/lib/bio/location.rb +407 -285
- data/lib/bio/map.rb +410 -0
- data/lib/bio/pathway.rb +558 -695
- data/lib/bio/reference.rb +272 -75
- data/lib/bio/sequence.rb +255 -13
- data/lib/bio/sequence/aa.rb +71 -10
- data/lib/bio/sequence/common.rb +187 -33
- data/lib/bio/sequence/compat.rb +59 -4
- data/lib/bio/sequence/format.rb +54 -7
- data/lib/bio/sequence/generic.rb +3 -3
- data/lib/bio/sequence/na.rb +328 -26
- data/lib/bio/shell.rb +11 -4
- data/lib/bio/shell/core.rb +221 -160
- data/lib/bio/shell/demo.rb +18 -15
- data/lib/bio/shell/interface.rb +14 -12
- data/lib/bio/shell/irb.rb +95 -0
- data/lib/bio/shell/object.rb +45 -26
- data/lib/bio/shell/plugin/blast.rb +42 -0
- data/lib/bio/shell/plugin/codon.rb +22 -14
- data/lib/bio/shell/plugin/das.rb +58 -0
- data/lib/bio/shell/plugin/emboss.rb +2 -2
- data/lib/bio/shell/plugin/entry.rb +22 -11
- data/lib/bio/shell/plugin/flatfile.rb +2 -2
- data/lib/bio/shell/plugin/keggapi.rb +13 -6
- data/lib/bio/shell/plugin/midi.rb +4 -4
- data/lib/bio/shell/plugin/obda.rb +2 -2
- data/lib/bio/shell/plugin/psort.rb +56 -0
- data/lib/bio/shell/plugin/seq.rb +35 -8
- data/lib/bio/shell/plugin/soap.rb +87 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/bioruby_generator.rb +29 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_classes.rhtml +4 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_log.rhtml +27 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_methods.rhtml +11 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_modules.rhtml +4 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_variables.rhtml +7 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-bg.gif +0 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-console.png +0 -0
- data/lib/bio/shell/rails/{public/images/icon.png → vendor/plugins/generators/bioruby/templates/bioruby-gem.png} +0 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-link.gif +0 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css +369 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.rhtml +47 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_controller.rb +144 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_helper.rb +47 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/commands.rhtml +8 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/history.rhtml +10 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml +22 -0
- data/lib/bio/shell/script.rb +25 -0
- data/lib/bio/shell/setup.rb +109 -0
- data/lib/bio/shell/web.rb +70 -58
- data/lib/bio/tree.rb +850 -0
- data/lib/bio/util/color_scheme.rb +84 -107
- data/lib/bio/util/color_scheme/buried.rb +5 -24
- data/lib/bio/util/color_scheme/helix.rb +5 -24
- data/lib/bio/util/color_scheme/hydropathy.rb +5 -24
- data/lib/bio/util/color_scheme/nucleotide.rb +5 -24
- data/lib/bio/util/color_scheme/strand.rb +5 -24
- data/lib/bio/util/color_scheme/taylor.rb +5 -24
- data/lib/bio/util/color_scheme/turn.rb +5 -24
- data/lib/bio/util/color_scheme/zappo.rb +5 -24
- data/lib/bio/util/contingency_table.rb +70 -43
- data/lib/bio/util/restriction_enzyme.rb +228 -0
- data/lib/bio/util/restriction_enzyme/analysis.rb +249 -0
- data/lib/bio/util/restriction_enzyme/analysis_basic.rb +217 -0
- data/lib/bio/util/restriction_enzyme/cut_symbol.rb +107 -0
- data/lib/bio/util/restriction_enzyme/double_stranded.rb +321 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb +130 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb +103 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb +38 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb +76 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb +107 -0
- data/lib/bio/util/restriction_enzyme/enzymes.yaml +7061 -0
- data/lib/bio/util/restriction_enzyme/range/cut_range.rb +24 -0
- data/lib/bio/util/restriction_enzyme/range/cut_ranges.rb +47 -0
- data/lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb +67 -0
- data/lib/bio/util/restriction_enzyme/range/sequence_range.rb +257 -0
- data/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb +242 -0
- data/lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb +51 -0
- data/lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb +41 -0
- data/lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb +77 -0
- data/lib/bio/util/restriction_enzyme/single_strand.rb +199 -0
- data/lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb +135 -0
- data/lib/bio/util/restriction_enzyme/single_strand_complement.rb +23 -0
- data/lib/bio/util/restriction_enzyme/string_formatting.rb +111 -0
- data/lib/bio/util/sirna.rb +4 -22
- data/sample/color_scheme_na.rb +4 -12
- data/sample/enzymes.rb +78 -0
- data/sample/goslim.rb +5 -13
- data/sample/psortplot_html.rb +4 -12
- data/test/data/blast/2.2.15.blastp.m7 +876 -0
- data/test/data/embl/AB090716.embl.rel89 +63 -0
- data/test/data/fasta/example1.txt +75 -0
- data/test/data/fasta/example2.txt +21 -0
- data/test/data/iprscan/merged.raw +32 -0
- data/test/data/iprscan/merged.txt +74 -0
- data/test/data/soft/GDS100_partial.soft +92 -0
- data/test/data/soft/GSE3457_family_partial.soft +874 -0
- data/test/functional/bio/io/test_ensembl.rb +103 -0
- data/test/functional/bio/io/test_soapwsdl.rb +5 -17
- data/test/unit/bio/appl/bl2seq/test_report.rb +2 -2
- data/test/unit/bio/appl/blast/test_report.rb +3 -16
- data/test/unit/bio/appl/blast/test_xmlparser.rb +4 -16
- data/test/unit/bio/appl/genscan/test_report.rb +3 -16
- data/test/unit/bio/appl/hmmer/test_report.rb +3 -16
- data/test/unit/bio/appl/iprscan/test_report.rb +338 -0
- data/test/unit/bio/appl/mafft/test_report.rb +63 -0
- data/test/unit/bio/appl/sosui/test_report.rb +3 -16
- data/test/unit/bio/appl/targetp/test_report.rb +3 -16
- data/test/unit/bio/appl/test_blast.rb +3 -16
- data/test/unit/bio/appl/test_fasta.rb +4 -16
- data/test/unit/bio/appl/test_pts1.rb +140 -0
- data/test/unit/bio/appl/tmhmm/test_report.rb +3 -16
- data/test/unit/bio/data/test_aa.rb +4 -17
- data/test/unit/bio/data/test_codontable.rb +3 -16
- data/test/unit/bio/data/test_na.rb +3 -3
- data/test/unit/bio/db/embl/test_common.rb +3 -16
- data/test/unit/bio/db/embl/test_embl.rb +3 -16
- data/test/unit/bio/db/embl/test_embl_rel89.rb +219 -0
- data/test/unit/bio/db/embl/test_sptr.rb +1548 -41
- data/test/unit/bio/db/embl/test_uniprot.rb +3 -16
- data/test/unit/bio/db/kegg/test_genes.rb +3 -16
- data/test/unit/bio/db/pdb/test_pdb.rb +7 -24
- data/test/unit/bio/db/test_aaindex.rb +2 -2
- data/test/unit/bio/db/test_fasta.rb +3 -16
- data/test/unit/bio/db/test_gff.rb +3 -16
- data/test/unit/bio/db/test_lasergene.rb +95 -0
- data/test/unit/bio/db/test_newick.rb +56 -0
- data/test/unit/bio/db/test_nexus.rb +360 -0
- data/test/unit/bio/db/test_prosite.rb +5 -18
- data/test/unit/bio/db/test_rebase.rb +11 -25
- data/test/unit/bio/db/test_soft.rb +138 -0
- data/test/unit/bio/io/test_ddbjxml.rb +5 -17
- data/test/unit/bio/io/test_ensembl.rb +109 -0
- data/test/unit/bio/io/test_fastacmd.rb +3 -16
- data/test/unit/bio/io/test_flatfile.rb +237 -0
- data/test/unit/bio/io/test_soapwsdl.rb +4 -17
- data/test/unit/bio/sequence/test_aa.rb +3 -3
- data/test/unit/bio/sequence/test_common.rb +3 -16
- data/test/unit/bio/sequence/test_compat.rb +3 -16
- data/test/unit/bio/sequence/test_na.rb +29 -3
- data/test/unit/bio/shell/plugin/test_seq.rb +8 -8
- data/test/unit/bio/test_alignment.rb +16 -27
- data/test/unit/bio/test_command.rb +242 -25
- data/test/unit/bio/test_db.rb +3 -16
- data/test/unit/bio/test_feature.rb +4 -16
- data/test/unit/bio/test_location.rb +4 -16
- data/test/unit/bio/test_map.rb +230 -0
- data/test/unit/bio/test_pathway.rb +4 -16
- data/test/unit/bio/test_reference.rb +2 -2
- data/test/unit/bio/test_sequence.rb +7 -19
- data/test/unit/bio/test_shell.rb +3 -16
- data/test/unit/bio/test_tree.rb +593 -0
- data/test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb +299 -0
- data/test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb +103 -0
- data/test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb +240 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb +100 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb +75 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb +73 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb +53 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb +104 -0
- data/test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb +83 -0
- data/test/unit/bio/util/restriction_enzyme/test_analysis.rb +246 -0
- data/test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb +44 -0
- data/test/unit/bio/util/restriction_enzyme/test_double_stranded.rb +115 -0
- data/test/unit/bio/util/restriction_enzyme/test_single_strand.rb +147 -0
- data/test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb +147 -0
- data/test/unit/bio/util/restriction_enzyme/test_string_formatting.rb +60 -0
- data/test/unit/bio/util/test_color_scheme.rb +6 -18
- data/test/unit/bio/util/test_contingency_table.rb +6 -18
- data/test/unit/bio/util/test_restriction_enzyme.rb +42 -0
- data/test/unit/bio/util/test_sirna.rb +3 -16
- metadata +228 -169
- data/doc/BioRuby.rd.ja +0 -225
- data/doc/Design.rd.ja +0 -341
- data/doc/TODO.rd.ja +0 -138
- data/lib/bio/appl/fasta/format6.rb +0 -37
- data/lib/bio/db/kegg/cell.rb +0 -88
- data/lib/bio/db/kegg/ko.rb +0 -178
- data/lib/bio/shell/rails/Rakefile +0 -10
- data/lib/bio/shell/rails/app/controllers/application.rb +0 -4
- data/lib/bio/shell/rails/app/controllers/shell_controller.rb +0 -94
- data/lib/bio/shell/rails/app/helpers/application_helper.rb +0 -3
- data/lib/bio/shell/rails/app/models/shell_connection.rb +0 -30
- data/lib/bio/shell/rails/app/views/layouts/shell.rhtml +0 -37
- data/lib/bio/shell/rails/app/views/shell/history.rhtml +0 -5
- data/lib/bio/shell/rails/app/views/shell/index.rhtml +0 -2
- data/lib/bio/shell/rails/app/views/shell/show.rhtml +0 -13
- data/lib/bio/shell/rails/config/boot.rb +0 -19
- data/lib/bio/shell/rails/config/database.yml +0 -85
- data/lib/bio/shell/rails/config/environment.rb +0 -53
- data/lib/bio/shell/rails/config/environments/development.rb +0 -19
- data/lib/bio/shell/rails/config/environments/production.rb +0 -19
- data/lib/bio/shell/rails/config/environments/test.rb +0 -19
- data/lib/bio/shell/rails/config/routes.rb +0 -19
- data/lib/bio/shell/rails/doc/README_FOR_APP +0 -2
- data/lib/bio/shell/rails/public/404.html +0 -8
- data/lib/bio/shell/rails/public/500.html +0 -8
- data/lib/bio/shell/rails/public/dispatch.cgi +0 -10
- data/lib/bio/shell/rails/public/dispatch.fcgi +0 -24
- data/lib/bio/shell/rails/public/dispatch.rb +0 -10
- data/lib/bio/shell/rails/public/favicon.ico +0 -0
- data/lib/bio/shell/rails/public/images/rails.png +0 -0
- data/lib/bio/shell/rails/public/index.html +0 -277
- data/lib/bio/shell/rails/public/javascripts/controls.js +0 -750
- data/lib/bio/shell/rails/public/javascripts/dragdrop.js +0 -584
- data/lib/bio/shell/rails/public/javascripts/effects.js +0 -854
- data/lib/bio/shell/rails/public/javascripts/prototype.js +0 -1785
- data/lib/bio/shell/rails/public/robots.txt +0 -1
- data/lib/bio/shell/rails/public/stylesheets/main.css +0 -187
- data/lib/bio/shell/rails/script/about +0 -3
- data/lib/bio/shell/rails/script/breakpointer +0 -3
- data/lib/bio/shell/rails/script/console +0 -3
- data/lib/bio/shell/rails/script/destroy +0 -3
- data/lib/bio/shell/rails/script/generate +0 -3
- data/lib/bio/shell/rails/script/performance/benchmarker +0 -3
- data/lib/bio/shell/rails/script/performance/profiler +0 -3
- data/lib/bio/shell/rails/script/plugin +0 -3
- data/lib/bio/shell/rails/script/process/reaper +0 -3
- data/lib/bio/shell/rails/script/process/spawner +0 -3
- data/lib/bio/shell/rails/script/process/spinner +0 -3
- data/lib/bio/shell/rails/script/runner +0 -3
- data/lib/bio/shell/rails/script/server +0 -42
- data/lib/bio/shell/rails/test/test_helper.rb +0 -28
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# bio/util/restriction_enzyme/single_strand_complement.rb - Single strand restriction enzyme sequence in complement orientation
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# Author:: Trevor Wennblom <mailto:trevor@corevx.com>
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# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
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# License:: The Ruby License
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# $Id: single_strand_complement.rb,v 1.5 2007/07/16 19:28:48 k Exp $
|
|
9
|
+
#
|
|
10
|
+
|
|
11
|
+
require 'bio/util/restriction_enzyme'
|
|
12
|
+
|
|
13
|
+
module Bio
|
|
14
|
+
class RestrictionEnzyme
|
|
15
|
+
|
|
16
|
+
# A single strand of restriction enzyme sequence pattern with a 3' to 5' orientation.
|
|
17
|
+
#
|
|
18
|
+
class SingleStrandComplement < SingleStrand
|
|
19
|
+
# Orientation of the strand, 3' to 5'
|
|
20
|
+
def orientation; [3, 5]; end
|
|
21
|
+
end # SingleStrandComplement
|
|
22
|
+
end # RestrictionEnzyme
|
|
23
|
+
end # Bio
|
|
@@ -0,0 +1,111 @@
|
|
|
1
|
+
#
|
|
2
|
+
# bio/util/restriction_enzyme/string_formatting.rb - Useful functions for string manipulation
|
|
3
|
+
#
|
|
4
|
+
# Author:: Trevor Wennblom <mailto:trevor@corevx.com>
|
|
5
|
+
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
|
|
6
|
+
# License:: The Ruby License
|
|
7
|
+
#
|
|
8
|
+
# $Id: string_formatting.rb,v 1.6 2007/07/16 19:28:48 k Exp $
|
|
9
|
+
#
|
|
10
|
+
|
|
11
|
+
require 'bio/util/restriction_enzyme'
|
|
12
|
+
|
|
13
|
+
module Bio
|
|
14
|
+
class RestrictionEnzyme
|
|
15
|
+
|
|
16
|
+
module StringFormatting
|
|
17
|
+
include CutSymbol
|
|
18
|
+
extend CutSymbol
|
|
19
|
+
|
|
20
|
+
# Return the sequence with spacing for alignment. Does not add whitespace
|
|
21
|
+
# around cut symbols.
|
|
22
|
+
#
|
|
23
|
+
# Example:
|
|
24
|
+
# pattern = 'n^ng^arraxt^n'
|
|
25
|
+
# add_spacing( pattern ) # => "n^n g^a r r a x t^n"
|
|
26
|
+
#
|
|
27
|
+
# ---
|
|
28
|
+
# *Arguments*
|
|
29
|
+
# * +seq+: sequence with cut symbols
|
|
30
|
+
# * +cs+: (_optional_) Cut symbol along the string. The reason this is
|
|
31
|
+
# definable outside of CutSymbol is that this is a utility function used
|
|
32
|
+
# to form vertical and horizontal cuts such as:
|
|
33
|
+
#
|
|
34
|
+
# a|t g c
|
|
35
|
+
# +---+
|
|
36
|
+
# t a c|g
|
|
37
|
+
# *Returns*:: +String+ sequence with single character distance between bases
|
|
38
|
+
def add_spacing( seq, cs = cut_symbol )
|
|
39
|
+
str = ''
|
|
40
|
+
flag = false
|
|
41
|
+
seq.each_byte do |c|
|
|
42
|
+
c = c.chr
|
|
43
|
+
if c == cs
|
|
44
|
+
str += c
|
|
45
|
+
flag = false
|
|
46
|
+
elsif flag
|
|
47
|
+
str += ' ' + c
|
|
48
|
+
else
|
|
49
|
+
str += c
|
|
50
|
+
flag = true
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
str
|
|
54
|
+
end
|
|
55
|
+
|
|
56
|
+
# Remove extraneous nucleic acid wildcards ('n' padding) from the
|
|
57
|
+
# left and right sides
|
|
58
|
+
#
|
|
59
|
+
# ---
|
|
60
|
+
# *Arguments*
|
|
61
|
+
# * +s+: sequence with extraneous 'n' padding
|
|
62
|
+
# *Returns*:: +String+ sequence without 'n' padding on the sides
|
|
63
|
+
def strip_padding( s )
|
|
64
|
+
if s[0].chr == 'n'
|
|
65
|
+
s =~ %r{(n+)(.+)}
|
|
66
|
+
s = $2
|
|
67
|
+
end
|
|
68
|
+
if s[-1].chr == 'n'
|
|
69
|
+
s =~ %r{(.+?)(n+)$}
|
|
70
|
+
s = $1
|
|
71
|
+
end
|
|
72
|
+
s
|
|
73
|
+
end
|
|
74
|
+
|
|
75
|
+
# Remove extraneous nucleic acid wildcards ('n' padding) from the
|
|
76
|
+
# left and right sides and remove cut symbols
|
|
77
|
+
#
|
|
78
|
+
# ---
|
|
79
|
+
# *Arguments*
|
|
80
|
+
# * +s+: sequence with extraneous 'n' padding and cut symbols
|
|
81
|
+
# *Returns*:: +String+ sequence without 'n' padding on the sides or cut symbols
|
|
82
|
+
def strip_cuts_and_padding( s )
|
|
83
|
+
strip_padding( s.tr(cut_symbol, '') )
|
|
84
|
+
end
|
|
85
|
+
|
|
86
|
+
# Return the 'n' padding on the left side of the strand
|
|
87
|
+
#
|
|
88
|
+
# ---
|
|
89
|
+
# *Arguments*
|
|
90
|
+
# * +s+: sequence with extraneous 'n' padding on the left side of the strand
|
|
91
|
+
# *Returns*:: +String+ the 'n' padding from the left side
|
|
92
|
+
def left_padding( s )
|
|
93
|
+
s =~ %r{^n+}
|
|
94
|
+
ret = $&
|
|
95
|
+
ret ? ret : '' # Don't pass nil values
|
|
96
|
+
end
|
|
97
|
+
|
|
98
|
+
# Return the 'n' padding on the right side of the strand
|
|
99
|
+
#
|
|
100
|
+
# ---
|
|
101
|
+
# *Arguments*
|
|
102
|
+
# * +s+: sequence with extraneous 'n' padding on the right side of the strand
|
|
103
|
+
# *Returns*:: +String+ the 'n' padding from the right side
|
|
104
|
+
def right_padding( s )
|
|
105
|
+
s =~ %r{n+$}
|
|
106
|
+
ret = $&
|
|
107
|
+
ret ? ret : '' # Don't pass nil values
|
|
108
|
+
end
|
|
109
|
+
end # StringFormatting
|
|
110
|
+
end # RestrictionEnzyme
|
|
111
|
+
end # Bio
|
data/lib/bio/util/sirna.rb
CHANGED
|
@@ -3,9 +3,9 @@
|
|
|
3
3
|
#
|
|
4
4
|
# Copyright:: Copyright (C) 2004, 2005
|
|
5
5
|
# Itoshi NIKAIDO <dritoshi@gmail.com>
|
|
6
|
-
# License::
|
|
6
|
+
# License:: The Ruby License
|
|
7
7
|
#
|
|
8
|
-
# $Id: sirna.rb,v 1.
|
|
8
|
+
# $Id: sirna.rb,v 1.11 2007/04/05 23:35:41 trevor Exp $
|
|
9
9
|
#
|
|
10
10
|
# == Bio::SiRNA - Designing siRNA.
|
|
11
11
|
#
|
|
@@ -38,24 +38,6 @@
|
|
|
38
38
|
# * Angela Reynolds et al. Rational siRNA design for RNA interference.
|
|
39
39
|
# Nature Biotech. 2004 22: 326-330.
|
|
40
40
|
#
|
|
41
|
-
#--
|
|
42
|
-
#
|
|
43
|
-
# This library is free software; you can redistribute it and/or
|
|
44
|
-
# modify it under the terms of the GNU Lesser General Public
|
|
45
|
-
# License as published by the Free Software Foundation; either
|
|
46
|
-
# version 2 of the License, or (at your option) any later version.
|
|
47
|
-
#
|
|
48
|
-
# This library is distributed in the hope that it will be useful,
|
|
49
|
-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
50
|
-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
|
51
|
-
# Lesser General Public License for more details.
|
|
52
|
-
#
|
|
53
|
-
# You should have received a copy of the GNU Lesser General Public
|
|
54
|
-
# License along with this library; if not, write to the Free Software
|
|
55
|
-
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
|
56
|
-
#
|
|
57
|
-
#++
|
|
58
|
-
#
|
|
59
41
|
|
|
60
42
|
require 'bio/sequence'
|
|
61
43
|
|
|
@@ -96,8 +78,8 @@ module Bio
|
|
|
96
78
|
one_third = target.size * 1 / 3
|
|
97
79
|
start_pos = @target_size - one_third - 1
|
|
98
80
|
remain_seq = target.subseq(start_pos, @target_size - 2)
|
|
99
|
-
|
|
100
|
-
return false if
|
|
81
|
+
au_number = remain_seq.scan(/[AU]/i).size
|
|
82
|
+
return false if au_number < 5
|
|
101
83
|
|
|
102
84
|
return true
|
|
103
85
|
end
|
data/sample/color_scheme_na.rb
CHANGED
|
@@ -13,19 +13,11 @@
|
|
|
13
13
|
# % ruby color_scheme_na.rb seq.fna > colored-seq-fna.html
|
|
14
14
|
#
|
|
15
15
|
#
|
|
16
|
-
# Copyright (C) 2005
|
|
16
|
+
# Copyright:: Copyright (C) 2005
|
|
17
|
+
# Mitsuteru C. Nakao <n@bioruby.org>
|
|
18
|
+
# License:: The Ruby License
|
|
17
19
|
#
|
|
18
|
-
#
|
|
19
|
-
# it under the terms of the GNU General Public License as published by
|
|
20
|
-
# the Free Software Foundation; either version 2 of the License, or
|
|
21
|
-
# (at your option) any later version.
|
|
22
|
-
#
|
|
23
|
-
# This program is distributed in the hope that it will be useful,
|
|
24
|
-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
25
|
-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
26
|
-
# GNU General Public License for more details.
|
|
27
|
-
#
|
|
28
|
-
# $Id: color_scheme_na.rb,v 1.1 2005/10/31 07:39:13 nakao Exp $
|
|
20
|
+
# $Id: color_scheme_na.rb,v 1.3 2007/04/05 23:35:42 trevor Exp $
|
|
29
21
|
#
|
|
30
22
|
|
|
31
23
|
require 'bio'
|
data/sample/enzymes.rb
ADDED
|
@@ -0,0 +1,78 @@
|
|
|
1
|
+
#!/usr/bin/env ruby
|
|
2
|
+
#
|
|
3
|
+
# enzymes.rb - cut input file using enzyme on command line
|
|
4
|
+
#
|
|
5
|
+
# Copyright (C) 2006 Pjotr Prins <p@bioruby.org> and Trevor Wennblom <trevor@corevx.com>
|
|
6
|
+
#
|
|
7
|
+
# This program is free software; you can redistribute it and/or modify
|
|
8
|
+
# it under the terms of the GNU General Public License as published by
|
|
9
|
+
# the Free Software Foundation; either version 2 of the License, or
|
|
10
|
+
# (at your option) any later version.
|
|
11
|
+
#
|
|
12
|
+
# This program is distributed in the hope that it will be useful,
|
|
13
|
+
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
14
|
+
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
15
|
+
# GNU General Public License for more details.
|
|
16
|
+
#
|
|
17
|
+
# $Id: enzymes.rb,v 1.1 2006/03/03 15:31:06 pjotr Exp $
|
|
18
|
+
#
|
|
19
|
+
|
|
20
|
+
require 'bio/io/flatfile'
|
|
21
|
+
require 'bio/util/restriction_enzyme'
|
|
22
|
+
|
|
23
|
+
include Bio
|
|
24
|
+
|
|
25
|
+
usage = <<USAGE
|
|
26
|
+
|
|
27
|
+
Usage: enzymes.rb enzyme1 [enzyme2] infiles
|
|
28
|
+
|
|
29
|
+
Examples:
|
|
30
|
+
|
|
31
|
+
Output the primary sequences cut using both BstYI and MseI:
|
|
32
|
+
|
|
33
|
+
./enzymes.rb BstYI MseI *.seq
|
|
34
|
+
|
|
35
|
+
or using the actual formats
|
|
36
|
+
|
|
37
|
+
./enzymes.rb "r^gatcy" "t^taa" *.seq
|
|
38
|
+
|
|
39
|
+
USAGE
|
|
40
|
+
|
|
41
|
+
if ARGV.size < 2
|
|
42
|
+
print usage
|
|
43
|
+
exit 1
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
enzyme1 = ARGV.shift
|
|
47
|
+
# ---- Fetch enzyme2 if it is not a file
|
|
48
|
+
arg2 = ARGV[0]
|
|
49
|
+
if arg2 and !File.exist?(arg2)
|
|
50
|
+
enzyme2 = ARGV.shift
|
|
51
|
+
end
|
|
52
|
+
|
|
53
|
+
re1 = Bio::RestrictionEnzyme::DoubleStranded.new(enzyme1)
|
|
54
|
+
puts "Enzyme #{enzyme1}: " + re1.primary.with_cut_symbols # e.g. r^gatcy
|
|
55
|
+
if (enzyme2)
|
|
56
|
+
re2 = Bio::RestrictionEnzyme::DoubleStranded.new(enzyme2)
|
|
57
|
+
puts "Enzyme #{enzyme2}: " + re2.primary.with_cut_symbols # e.g. t^taa
|
|
58
|
+
end
|
|
59
|
+
|
|
60
|
+
ARGV.each do | fn |
|
|
61
|
+
ff = Bio::FlatFile.auto(fn)
|
|
62
|
+
ff.each_entry do |entry|
|
|
63
|
+
seq = Bio::Sequence::NA.new(entry.seq)
|
|
64
|
+
# puts seq.inspect
|
|
65
|
+
seq.cut_with_enzyme(enzyme1).each do | frag1 |
|
|
66
|
+
frag = frag1
|
|
67
|
+
if enzyme2
|
|
68
|
+
seq = Bio::Sequence::NA.new(frag1.primary)
|
|
69
|
+
frags2 = seq.cut_with_enzyme(enzyme2)
|
|
70
|
+
next if frags2.size == 0
|
|
71
|
+
frag = frags2.shift # pick up first fragment
|
|
72
|
+
end
|
|
73
|
+
print '> '+entry.definition+"\n"
|
|
74
|
+
print frag.primary,"\n"
|
|
75
|
+
end
|
|
76
|
+
end
|
|
77
|
+
end
|
|
78
|
+
|
data/sample/goslim.rb
CHANGED
|
@@ -10,24 +10,16 @@
|
|
|
10
10
|
# % R < mgi.R
|
|
11
11
|
# % gv mgi.pdf
|
|
12
12
|
#
|
|
13
|
-
#
|
|
13
|
+
# Copyright:: Copyright (C) 2003
|
|
14
|
+
# Mitsuteru C. Nakao <n@bioruby.org>
|
|
15
|
+
# License:: The Ruby License
|
|
14
16
|
#
|
|
15
|
-
#
|
|
16
|
-
# it under the terms of the GNU General Public License as published by
|
|
17
|
-
# the Free Software Foundation; either version 2 of the License, or
|
|
18
|
-
# (at your option) any later version.
|
|
19
|
-
#
|
|
20
|
-
# This program is distributed in the hope that it will be useful,
|
|
21
|
-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
22
|
-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
23
|
-
# GNU General Public License for more details.
|
|
24
|
-
#
|
|
25
|
-
# $Id: goslim.rb,v 1.3 2003/05/13 10:45:42 n Exp $
|
|
17
|
+
# $Id: goslim.rb,v 1.5 2007/04/05 23:35:42 trevor Exp $
|
|
26
18
|
#
|
|
27
19
|
|
|
28
20
|
|
|
29
21
|
|
|
30
|
-
SCRIPT_VERSION = '$Id: goslim.rb,v 1.
|
|
22
|
+
SCRIPT_VERSION = '$Id: goslim.rb,v 1.5 2007/04/05 23:35:42 trevor Exp $'
|
|
31
23
|
|
|
32
24
|
USAGE = "${__FILE__} - GO slim
|
|
33
25
|
Usage:
|
data/sample/psortplot_html.rb
CHANGED
|
@@ -11,19 +11,11 @@
|
|
|
11
11
|
# % ruby psortplot_html.rb path:eco00010
|
|
12
12
|
# % cat eco00010_psort2.html
|
|
13
13
|
#
|
|
14
|
-
# Copyright (C) 2005
|
|
14
|
+
# Copyright:: Copyright (C) 2005
|
|
15
|
+
# Mitsuteru C. Nakao <n@bioruby.org>
|
|
16
|
+
# License:: The Ruby License
|
|
15
17
|
#
|
|
16
|
-
#
|
|
17
|
-
# it under the terms of the GNU General Public License as published by
|
|
18
|
-
# the Free Software Foundation; either version 2 of the License, or
|
|
19
|
-
# (at your option) any later version.
|
|
20
|
-
#
|
|
21
|
-
# This program is distributed in the hope that it will be useful,
|
|
22
|
-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
23
|
-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
24
|
-
# GNU General Public License for more details.
|
|
25
|
-
#
|
|
26
|
-
# $Id: psortplot_html.rb,v 1.1 2005/10/12 02:10:11 nakao Exp $
|
|
18
|
+
# $Id: psortplot_html.rb,v 1.3 2007/04/05 23:35:42 trevor Exp $
|
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require 'bio'
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<?xml version="1.0"?>
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<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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<BlastOutput>
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<BlastOutput_program>blastp</BlastOutput_program>
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<BlastOutput_version>blastp 2.2.15 [Oct-15-2006]</BlastOutput_version>
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<BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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<BlastOutput_db>p53_barbu.fasta</BlastOutput_db>
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<BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID>
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<BlastOutput_query-def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</BlastOutput_query-def>
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<BlastOutput_query-len>393</BlastOutput_query-len>
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<BlastOutput_param>
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<Parameters>
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<Parameters_matrix>BLOSUM62</Parameters_matrix>
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<Parameters_expect>10</Parameters_expect>
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<Parameters_gap-open>11</Parameters_gap-open>
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<Parameters_gap-extend>1</Parameters_gap-extend>
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<Parameters_filter>F</Parameters_filter>
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</Parameters>
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</BlastOutput_param>
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<BlastOutput_iterations>
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<Iteration>
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<Iteration_iter-num>1</Iteration_iter-num>
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<Iteration_query-ID>lcl|1_0</Iteration_query-ID>
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<Iteration_query-def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</Iteration_query-def>
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<Iteration_query-len>393</Iteration_query-len>
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<Iteration_hits>
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<Hit>
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<Hit_num>1</Hit_num>
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<Hit_id>gnl|BL_ORD_ID|13</Hit_id>
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<Hit_def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</Hit_def>
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<Hit_accession>13</Hit_accession>
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<Hit_len>393</Hit_len>
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<Hit_hsps>
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<Hsp>
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<Hsp_num>1</Hsp_num>
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<Hsp_bit-score>755.362</Hsp_bit-score>
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<Hsp_score>1949</Hsp_score>
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<Hsp_evalue>0</Hsp_evalue>
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<Hsp_query-from>1</Hsp_query-from>
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<Hsp_query-to>393</Hsp_query-to>
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<Hsp_hit-from>1</Hsp_hit-from>
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<Hsp_hit-to>393</Hsp_hit-to>
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<Hsp_query-frame>1</Hsp_query-frame>
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<Hsp_hit-frame>1</Hsp_hit-frame>
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<Hsp_identity>366</Hsp_identity>
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<Hsp_positive>366</Hsp_positive>
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<Hsp_align-len>393</Hsp_align-len>
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<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
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<Hsp_hseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_hseq>
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<Hsp_midline>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDE SWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_midline>
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</Hsp>
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</Hit_hsps>
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</Hit>
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<Hit>
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<Hit_num>2</Hit_num>
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<Hit_id>gnl|BL_ORD_ID|6</Hit_id>
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<Hit_def>P53_CERAE P13481 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
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<Hit_accession>6</Hit_accession>
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<Hit_len>393</Hit_len>
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<Hit_hsps>
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<Hsp>
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<Hsp_num>1</Hsp_num>
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<Hsp_bit-score>730.324</Hsp_bit-score>
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<Hsp_score>1884</Hsp_score>
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<Hsp_evalue>0</Hsp_evalue>
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<Hsp_query-from>1</Hsp_query-from>
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<Hsp_query-to>393</Hsp_query-to>
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<Hsp_hit-from>1</Hsp_hit-from>
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<Hsp_hit-to>393</Hsp_hit-to>
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<Hsp_query-frame>1</Hsp_query-frame>
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<Hsp_hit-frame>1</Hsp_hit-frame>
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<Hsp_identity>353</Hsp_identity>
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<Hsp_positive>357</Hsp_positive>
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<Hsp_align-len>393</Hsp_align-len>
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<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
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<Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPHMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
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<Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP HELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
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</Hsp>
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</Hit_hsps>
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</Hit>
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<Hit>
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<Hit_num>3</Hit_num>
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<Hit_id>gnl|BL_ORD_ID|17</Hit_id>
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<Hit_def>P53_MACMU P56424 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
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<Hit_accession>17</Hit_accession>
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<Hit_len>393</Hit_len>
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<Hit_hsps>
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<Hsp>
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<Hsp_num>1</Hsp_num>
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<Hsp_bit-score>729.169</Hsp_bit-score>
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<Hsp_score>1881</Hsp_score>
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<Hsp_evalue>0</Hsp_evalue>
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<Hsp_query-from>1</Hsp_query-from>
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<Hsp_query-to>393</Hsp_query-to>
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<Hsp_hit-from>1</Hsp_hit-from>
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<Hsp_hit-to>393</Hsp_hit-to>
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<Hsp_query-frame>1</Hsp_query-frame>
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<Hsp_hit-frame>1</Hsp_hit-frame>
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<Hsp_identity>352</Hsp_identity>
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<Hsp_positive>357</Hsp_positive>
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101
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<Hsp_align-len>393</Hsp_align-len>
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102
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<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
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<Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
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<Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
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</Hsp>
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</Hit_hsps>
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</Hit>
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<Hit>
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<Hit_num>4</Hit_num>
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<Hit_id>gnl|BL_ORD_ID|16</Hit_id>
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<Hit_def>P53_MACFU P61260 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
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<Hit_accession>16</Hit_accession>
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<Hit_len>393</Hit_len>
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<Hit_hsps>
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<Hsp>
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<Hsp_num>1</Hsp_num>
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<Hsp_bit-score>729.169</Hsp_bit-score>
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<Hsp_score>1881</Hsp_score>
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<Hsp_evalue>0</Hsp_evalue>
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<Hsp_query-from>1</Hsp_query-from>
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<Hsp_query-to>393</Hsp_query-to>
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<Hsp_hit-from>1</Hsp_hit-from>
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<Hsp_hit-to>393</Hsp_hit-to>
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<Hsp_query-frame>1</Hsp_query-frame>
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<Hsp_hit-frame>1</Hsp_hit-frame>
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<Hsp_identity>352</Hsp_identity>
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<Hsp_positive>357</Hsp_positive>
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<Hsp_align-len>393</Hsp_align-len>
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<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
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<Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
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<Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
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</Hsp>
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133
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</Hit_hsps>
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134
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</Hit>
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135
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<Hit>
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136
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<Hit_num>5</Hit_num>
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137
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<Hit_id>gnl|BL_ORD_ID|15</Hit_id>
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138
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<Hit_def>P53_MACFA P56423 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
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139
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<Hit_accession>15</Hit_accession>
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140
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<Hit_len>393</Hit_len>
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<Hit_hsps>
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142
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<Hsp>
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143
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<Hsp_num>1</Hsp_num>
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144
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<Hsp_bit-score>729.169</Hsp_bit-score>
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145
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<Hsp_score>1881</Hsp_score>
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146
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<Hsp_evalue>0</Hsp_evalue>
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147
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<Hsp_query-from>1</Hsp_query-from>
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148
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<Hsp_query-to>393</Hsp_query-to>
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149
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<Hsp_hit-from>1</Hsp_hit-from>
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150
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<Hsp_hit-to>393</Hsp_hit-to>
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151
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<Hsp_query-frame>1</Hsp_query-frame>
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152
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<Hsp_hit-frame>1</Hsp_hit-frame>
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153
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<Hsp_identity>352</Hsp_identity>
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154
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<Hsp_positive>357</Hsp_positive>
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155
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<Hsp_align-len>393</Hsp_align-len>
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156
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+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
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157
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+
<Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
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158
|
+
<Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
|
|
159
|
+
</Hsp>
|
|
160
|
+
</Hit_hsps>
|
|
161
|
+
</Hit>
|
|
162
|
+
<Hit>
|
|
163
|
+
<Hit_num>6</Hit_num>
|
|
164
|
+
<Hit_id>gnl|BL_ORD_ID|18</Hit_id>
|
|
165
|
+
<Hit_def>P53_MARMO O36006 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
166
|
+
<Hit_accession>18</Hit_accession>
|
|
167
|
+
<Hit_len>391</Hit_len>
|
|
168
|
+
<Hit_hsps>
|
|
169
|
+
<Hsp>
|
|
170
|
+
<Hsp_num>1</Hsp_num>
|
|
171
|
+
<Hsp_bit-score>659.448</Hsp_bit-score>
|
|
172
|
+
<Hsp_score>1700</Hsp_score>
|
|
173
|
+
<Hsp_evalue>0</Hsp_evalue>
|
|
174
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
175
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
176
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
177
|
+
<Hsp_hit-to>391</Hsp_hit-to>
|
|
178
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
179
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
180
|
+
<Hsp_identity>323</Hsp_identity>
|
|
181
|
+
<Hsp_positive>338</Hsp_positive>
|
|
182
|
+
<Hsp_gaps>2</Hsp_gaps>
|
|
183
|
+
<Hsp_align-len>393</Hsp_align-len>
|
|
184
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
185
|
+
<Hsp_hseq>MEEAQSDLSIEPPLSQETFSDLWNLLPENNVLSPVLSPPMDDLLLSSEDVENWF--DKGPDEALQMSAAPAPKAPTPAASTLAAPSPATSWPLSSSVPSQNTYPGVYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSECTTIHYNYMCNSSCMGGMNRRPILTIITLEGSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKRGEPCPEPPPRSTKRALPNGTSSSPQPKKKPLDGEYFTLKIRGRARFEMFQELNEALELKDAQAEKEPGESRPHPSYLKSKKGQSTSRHKKIIFKREGPDSD</Hsp_hseq>
|
|
186
|
+
<Hsp_midline>MEE QSD S+EPPLSQETFSDLW LLPENNVLSP+ S MDDL+LS +D+E WF D GPDE SWPLSSSVPSQ TY G YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGS+CTTIHYNYMCNSSCMGGMNRRPILTIITLE SSGNLLGRNSFEVRVCACPGRDRRTEEEN RK+GEP E PP STKRALPN TSSSPQPKKKPLDGEYFTL+IRGR RFEMF+ELNEALELKDAQA KEPG SR H S+LKSKKGQSTSRHKK++FK EGPDSD</Hsp_midline>
|
|
187
|
+
</Hsp>
|
|
188
|
+
</Hit_hsps>
|
|
189
|
+
</Hit>
|
|
190
|
+
<Hit>
|
|
191
|
+
<Hit_num>7</Hit_num>
|
|
192
|
+
<Hit_id>gnl|BL_ORD_ID|25</Hit_id>
|
|
193
|
+
<Hit_def>P53_RABIT Q95330 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
194
|
+
<Hit_accession>25</Hit_accession>
|
|
195
|
+
<Hit_len>391</Hit_len>
|
|
196
|
+
<Hit_hsps>
|
|
197
|
+
<Hsp>
|
|
198
|
+
<Hsp_num>1</Hsp_num>
|
|
199
|
+
<Hsp_bit-score>648.277</Hsp_bit-score>
|
|
200
|
+
<Hsp_score>1671</Hsp_score>
|
|
201
|
+
<Hsp_evalue>0</Hsp_evalue>
|
|
202
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
203
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
204
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
205
|
+
<Hsp_hit-to>391</Hsp_hit-to>
|
|
206
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
207
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
208
|
+
<Hsp_identity>322</Hsp_identity>
|
|
209
|
+
<Hsp_positive>338</Hsp_positive>
|
|
210
|
+
<Hsp_gaps>4</Hsp_gaps>
|
|
211
|
+
<Hsp_align-len>394</Hsp_align-len>
|
|
212
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTS-SSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
213
|
+
<Hsp_hseq>MEESQSDLSLEPPLSQETFSDLWKLLPENNLLTTSLNPPVDDL-LSAEDVANWLNEDP--EEGLRVPAAPAPEAPAPAAPALAAPAPATSWPLSSSVPSQKTYHGNYGFRLGFLHSGTAKSVTCTYSPCLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPELPPGSSKRALPTTTTDSSPQTKKKPLDGEYFILKIRGRERFEMFRELNEALELKDAQAEKEPGGSRAHSSYLKAKKGQSTSRHKKPMFKREGPDSD</Hsp_hseq>
|
|
214
|
+
<Hsp_midline>MEE QSD S+EPPLSQETFSDLWKLLPENN+L+ + +DDL LS +D+ W EDP +E SWPLSSSVPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP ELPPGS+KRALP T+ SSPQ KKKPLDGEYF L+IRGRERFEMFRELNEALELKDAQA KEPGGSRAHSS+LK+KKGQSTSRHKK MFK EGPDSD</Hsp_midline>
|
|
215
|
+
</Hsp>
|
|
216
|
+
</Hit_hsps>
|
|
217
|
+
</Hit>
|
|
218
|
+
<Hit>
|
|
219
|
+
<Hit_num>8</Hit_num>
|
|
220
|
+
<Hit_id>gnl|BL_ORD_ID|9</Hit_id>
|
|
221
|
+
<Hit_def>P53_DELLE Q8SPZ3 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
222
|
+
<Hit_accession>9</Hit_accession>
|
|
223
|
+
<Hit_len>387</Hit_len>
|
|
224
|
+
<Hit_hsps>
|
|
225
|
+
<Hsp>
|
|
226
|
+
<Hsp_num>1</Hsp_num>
|
|
227
|
+
<Hsp_bit-score>635.95</Hsp_bit-score>
|
|
228
|
+
<Hsp_score>1639</Hsp_score>
|
|
229
|
+
<Hsp_evalue>0</Hsp_evalue>
|
|
230
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
231
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
232
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
233
|
+
<Hsp_hit-to>387</Hsp_hit-to>
|
|
234
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
235
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
236
|
+
<Hsp_identity>318</Hsp_identity>
|
|
237
|
+
<Hsp_positive>332</Hsp_positive>
|
|
238
|
+
<Hsp_gaps>8</Hsp_gaps>
|
|
239
|
+
<Hsp_align-len>394</Hsp_align-len>
|
|
240
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
241
|
+
<Hsp_hseq>MEESQAELGVEPPLSQETFSDLWKLLPENNLLSSELSPAVDDLLLSPEDVANWL--DERPDEAPQMPEPPAPAAPTPAAPAPAT-----SWPLSSFVPSQKTYPGSYGFHLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERCSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSNGNLLGRNSFEVRVCACPGRDRRTEEENFHKKGQSCPELPTGSAKRALPTGTSSSPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGESRAHSSHLKSKKGQSPSRHKKLMFKREGPDSD</Hsp_hseq>
|
|
242
|
+
<Hsp_midline>MEE Q++ VEPPLSQETFSDLWKLLPENN+LS S A+DDL+LSP+D+ W D PDE SWPLSS VPSQKTY GSYGF LGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHERCSD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDS+GNLLGRNSFEVRVCACPGRDRRTEEEN KKG+ ELP GS KRALP TSSSP KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG SRAHSSHLKSKKGQS SRHKKLMFK EGPDSD</Hsp_midline>
|
|
243
|
+
</Hsp>
|
|
244
|
+
</Hit_hsps>
|
|
245
|
+
</Hit>
|
|
246
|
+
<Hit>
|
|
247
|
+
<Hit_num>9</Hit_num>
|
|
248
|
+
<Hit_id>gnl|BL_ORD_ID|23</Hit_id>
|
|
249
|
+
<Hit_def>P53_PIG Q9TUB2 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
250
|
+
<Hit_accession>23</Hit_accession>
|
|
251
|
+
<Hit_len>386</Hit_len>
|
|
252
|
+
<Hit_hsps>
|
|
253
|
+
<Hsp>
|
|
254
|
+
<Hsp_num>1</Hsp_num>
|
|
255
|
+
<Hsp_bit-score>607.446</Hsp_bit-score>
|
|
256
|
+
<Hsp_score>1565</Hsp_score>
|
|
257
|
+
<Hsp_evalue>4.50259e-177</Hsp_evalue>
|
|
258
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
259
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
260
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
261
|
+
<Hsp_hit-to>386</Hsp_hit-to>
|
|
262
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
263
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
264
|
+
<Hsp_identity>308</Hsp_identity>
|
|
265
|
+
<Hsp_positive>326</Hsp_positive>
|
|
266
|
+
<Hsp_gaps>11</Hsp_gaps>
|
|
267
|
+
<Hsp_align-len>395</Hsp_align-len>
|
|
268
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSP-LPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
269
|
+
<Hsp_hseq>MEESQSELGVEPPLSQETFSDLWKLLPENNLLSSELSLAAVNDLLLSP--VTNWLDENPDDASRVPAPPAATAPAPAAPAPAT-------SWPLSSFVPSQKTYPGSYDFRLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDASGNLLGRNSFEVRVCACPGRDRRTEEENFLKKGQSCPEPPPGSTKRALPTSTSSSPVQKKKPLDGEYFTLQIRGRERFEMFRELNDALELKDAQTARESGENRAHSSHLKSKKGQSPSRHKKPMFKREGPDSD</Hsp_hseq>
|
|
270
|
+
<Hsp_midline>MEE QS+ VEPPLSQETFSDLWKLLPENN+LS L A++DL+LSP + W E+P SWPLSS VPSQKTY GSY FRLGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLED+SGNLLGRNSFEVRVCACPGRDRRTEEEN KKG+ E PPGSTKRALP +TSSSP KKKPLDGEYFTLQIRGRERFEMFRELN+ALELKDAQ +E G +RAHSSHLKSKKGQS SRHKK MFK EGPDSD</Hsp_midline>
|
|
271
|
+
</Hsp>
|
|
272
|
+
</Hit_hsps>
|
|
273
|
+
</Hit>
|
|
274
|
+
<Hit>
|
|
275
|
+
<Hit_num>10</Hit_num>
|
|
276
|
+
<Hit_id>gnl|BL_ORD_ID|4</Hit_id>
|
|
277
|
+
<Hit_def>P53_CANFA Q29537 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
278
|
+
<Hit_accession>4</Hit_accession>
|
|
279
|
+
<Hit_len>381</Hit_len>
|
|
280
|
+
<Hit_hsps>
|
|
281
|
+
<Hsp>
|
|
282
|
+
<Hsp_num>1</Hsp_num>
|
|
283
|
+
<Hsp_bit-score>604.749</Hsp_bit-score>
|
|
284
|
+
<Hsp_score>1558</Hsp_score>
|
|
285
|
+
<Hsp_evalue>2.91849e-176</Hsp_evalue>
|
|
286
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
287
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
288
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
289
|
+
<Hsp_hit-to>381</Hsp_hit-to>
|
|
290
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
291
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
292
|
+
<Hsp_identity>304</Hsp_identity>
|
|
293
|
+
<Hsp_positive>325</Hsp_positive>
|
|
294
|
+
<Hsp_gaps>14</Hsp_gaps>
|
|
295
|
+
<Hsp_align-len>394</Hsp_align-len>
|
|
296
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
297
|
+
<Hsp_hseq>MEESQSELNIDPPLSQETFSELWNLLPENNVLSSELCPAVDELLL-PESVVNWLDEDSDD------------APRMPATSAPTAPGPAPSWPLSSSVPSPKTYPGTYGFRLGFLHSGTAKSVTWTYSPLLNKLFCQLAKTCPVQLWVSSPPPPNTCVRAMAIYKKSEFVTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAKYLDDRNTFRHSVVVPYEPPEVGSDYTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNVLGRNSFEVRVCACPGRDRRTEEENFHKKGEPCPEPPPGSTKRALPPSTSSSPPQKKKPLDGEYFTLQIRGRERYEMFRNLNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKLMFKREGLDSD</Hsp_hseq>
|
|
298
|
+
<Hsp_midline>MEE QS+ +++PPLSQETFS+LW LLPENNVLS A+D+L+L P+ + W ED SWPLSSSVPS KTY G+YGFRLGFLHSGTAKSVT TYSP LNK+FCQLAKTCPVQLWV S PPP T VRAMAIYK+S+ +TEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR +YLDDRNTFRHSVVVPYEPPEVGSD TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGN+LGRNSFEVRVCACPGRDRRTEEEN KKGEP E PPGSTKRALP +TSSSP KKKPLDGEYFTLQIRGRER+EMFR LNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKKLMFK EG DSD</Hsp_midline>
|
|
299
|
+
</Hsp>
|
|
300
|
+
</Hit_hsps>
|
|
301
|
+
</Hit>
|
|
302
|
+
<Hit>
|
|
303
|
+
<Hit_num>11</Hit_num>
|
|
304
|
+
<Hit_id>gnl|BL_ORD_ID|11</Hit_id>
|
|
305
|
+
<Hit_def>P53_FELCA P41685 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
306
|
+
<Hit_accession>11</Hit_accession>
|
|
307
|
+
<Hit_len>386</Hit_len>
|
|
308
|
+
<Hit_hsps>
|
|
309
|
+
<Hsp>
|
|
310
|
+
<Hsp_num>1</Hsp_num>
|
|
311
|
+
<Hsp_bit-score>602.823</Hsp_bit-score>
|
|
312
|
+
<Hsp_score>1553</Hsp_score>
|
|
313
|
+
<Hsp_evalue>1.10903e-175</Hsp_evalue>
|
|
314
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
315
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
316
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
317
|
+
<Hsp_hit-to>386</Hsp_hit-to>
|
|
318
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
319
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
320
|
+
<Hsp_identity>303</Hsp_identity>
|
|
321
|
+
<Hsp_positive>325</Hsp_positive>
|
|
322
|
+
<Hsp_gaps>9</Hsp_gaps>
|
|
323
|
+
<Hsp_align-len>394</Hsp_align-len>
|
|
324
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
325
|
+
<Hsp_hseq>MQEPPLELTIEPPLSQETFSELWNLLPENNVLSSELSSAMNELPLS-EDVANWL--DEAPDDASGMSAVPAPAAPAPATPAPAI-----SWPLSSFVPSQKTYPGAYGFHLGFLQSGTAKSVTCTYSPPLNKLFCQLAKTCPVQLWVRSPPPPGTCVRAMAIYKKSEFMTEVVRRCPHHERCPDSSDGLAPPQHLIRVEGNLHAKYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPIITIITLEDSNGKLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPEPPPGSTKRALPPSTSSTPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKPMLKREGLDSD</Hsp_hseq>
|
|
326
|
+
<Hsp_midline>M+EP + ++EPPLSQETFS+LW LLPENNVLS S AM++L LS +D+ W D PD+ SWPLSS VPSQKTY G+YGF LGFL SGTAKSVTCTYSP LNK+FCQLAKTCPVQLWV S PPPGT VRAMAIYK+S+ MTEVVRRCPHHERC DS DGLAPPQHLIRVEGNL +YLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPI+TIITLEDS+G LLGRNSFEVRVCACPGRDRRTEEEN RKKGEP E PPGSTKRALP +TSS+P KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKK M K EG DSD</Hsp_midline>
|
|
327
|
+
</Hsp>
|
|
328
|
+
</Hit_hsps>
|
|
329
|
+
</Hit>
|
|
330
|
+
<Hit>
|
|
331
|
+
<Hit_num>12</Hit_num>
|
|
332
|
+
<Hit_id>gnl|BL_ORD_ID|5</Hit_id>
|
|
333
|
+
<Hit_def>P53_CAVPO Q9WUR6 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
334
|
+
<Hit_accession>5</Hit_accession>
|
|
335
|
+
<Hit_len>391</Hit_len>
|
|
336
|
+
<Hit_hsps>
|
|
337
|
+
<Hsp>
|
|
338
|
+
<Hsp_num>1</Hsp_num>
|
|
339
|
+
<Hsp_bit-score>600.512</Hsp_bit-score>
|
|
340
|
+
<Hsp_score>1547</Hsp_score>
|
|
341
|
+
<Hsp_evalue>5.50404e-175</Hsp_evalue>
|
|
342
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
343
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
344
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
345
|
+
<Hsp_hit-to>391</Hsp_hit-to>
|
|
346
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
347
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
348
|
+
<Hsp_identity>297</Hsp_identity>
|
|
349
|
+
<Hsp_positive>319</Hsp_positive>
|
|
350
|
+
<Hsp_gaps>2</Hsp_gaps>
|
|
351
|
+
<Hsp_align-len>393</Hsp_align-len>
|
|
352
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
353
|
+
<Hsp_hseq>MEEPHSDLSIEPPLSQETFSDLWKLLPENNVLSDSLSPPMDHLLLSPEEVASWLGENPDGD--GHVSAAPVSEAPTSAGPALVAPAPATSWPLSSSVPSHKPYRGSYGFEVHFLKSGTAKSVTCTYSPGLNKLFCQLAKTCPVQVWVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLHAEYVDDRTTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGKLLGRDSFEVRVCACPGRDRRTEEENFRKKGGLCPEPTPGNIKRALPTSTSSSPQPKKKPLDAEYFTLKIRGRKNFEILREINEALEFKDAQTEKEPGESRPHSSYPKSKKGQSTSCHKKLMFKREGLDSD</Hsp_hseq>
|
|
354
|
+
<Hsp_midline>MEEP SD S+EPPLSQETFSDLWKLLPENNVLS S MD L+LSP+++ W E+P D SWPLSSSVPS K Y+GSYGF + FL SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNL EY+DDR TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSG LLGR+SFEVRVCACPGRDRRTEEEN RKKG E PG+ KRALP +TSSSPQPKKKPLD EYFTL+IRGR+ FE+ RE+NEALE KDAQ KEPG SR HSS+ KSKKGQSTS HKKLMFK EG DSD</Hsp_midline>
|
|
355
|
+
</Hsp>
|
|
356
|
+
</Hit_hsps>
|
|
357
|
+
</Hit>
|
|
358
|
+
<Hit>
|
|
359
|
+
<Hit_num>13</Hit_num>
|
|
360
|
+
<Hit_id>gnl|BL_ORD_ID|27</Hit_id>
|
|
361
|
+
<Hit_def>P53_SHEEP P51664 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
362
|
+
<Hit_accession>27</Hit_accession>
|
|
363
|
+
<Hit_len>382</Hit_len>
|
|
364
|
+
<Hit_hsps>
|
|
365
|
+
<Hsp>
|
|
366
|
+
<Hsp_num>1</Hsp_num>
|
|
367
|
+
<Hsp_bit-score>595.89</Hsp_bit-score>
|
|
368
|
+
<Hsp_score>1535</Hsp_score>
|
|
369
|
+
<Hsp_evalue>1.35569e-173</Hsp_evalue>
|
|
370
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
371
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
372
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
373
|
+
<Hsp_hit-to>382</Hsp_hit-to>
|
|
374
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
375
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
376
|
+
<Hsp_identity>299</Hsp_identity>
|
|
377
|
+
<Hsp_positive>320</Hsp_positive>
|
|
378
|
+
<Hsp_gaps>13</Hsp_gaps>
|
|
379
|
+
<Hsp_align-len>394</Hsp_align-len>
|
|
380
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
381
|
+
<Hsp_hseq>MEESQAELGVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDLLPYSEDVVTWLDECPNE------------APQMPEPPAQAALAPATSWPLSSFVPSQKTYPGNYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRSPHHERSSDYSDGLAPPQHLIRVEGNLRAEYFDDRNTFRHSVVVPYESPEIESECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSRGNLLGRSSFEVRVCACPGRDRRTEEENFRKKGQSCPEPPPGSTKRALPSSTSSSPQQKKKPLDGEYFTLQIRGRKRFEMFRELNEALELMDAQAGREPGESRAHSSHLKSKKGPSPSCHKKPMLKREGPDSD</Hsp_hseq>
|
|
382
|
+
<Hsp_midline>MEE Q++ VEPPLSQETFSDLW LLPENN+LS S +DDL+ +D+ W E P SWPLSS VPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRR PHHER SD SDGLAPPQHLIRVEGNLR EY DDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGR+SFEVRVCACPGRDRRTEEEN RKKG+ E PPGSTKRALP++TSSSPQ KKKPLDGEYFTLQIRGR+RFEMFRELNEALEL DAQAG+EPG SRAHSSHLKSKKG S S HKK M K EGPDSD</Hsp_midline>
|
|
383
|
+
</Hsp>
|
|
384
|
+
</Hit_hsps>
|
|
385
|
+
</Hit>
|
|
386
|
+
<Hit>
|
|
387
|
+
<Hit_num>14</Hit_num>
|
|
388
|
+
<Hit_id>gnl|BL_ORD_ID|19</Hit_id>
|
|
389
|
+
<Hit_def>P53_MESAU Q00366 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
390
|
+
<Hit_accession>19</Hit_accession>
|
|
391
|
+
<Hit_len>396</Hit_len>
|
|
392
|
+
<Hit_hsps>
|
|
393
|
+
<Hsp>
|
|
394
|
+
<Hsp_num>1</Hsp_num>
|
|
395
|
+
<Hsp_bit-score>594.349</Hsp_bit-score>
|
|
396
|
+
<Hsp_score>1531</Hsp_score>
|
|
397
|
+
<Hsp_evalue>3.94446e-173</Hsp_evalue>
|
|
398
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
399
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
400
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
401
|
+
<Hsp_hit-to>396</Hsp_hit-to>
|
|
402
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
403
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
404
|
+
<Hsp_identity>300</Hsp_identity>
|
|
405
|
+
<Hsp_positive>324</Hsp_positive>
|
|
406
|
+
<Hsp_gaps>7</Hsp_gaps>
|
|
407
|
+
<Hsp_align-len>398</Hsp_align-len>
|
|
408
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQ-AMDDLMLSPDDIEQWFTEDPGP----DEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
409
|
+
<Hsp_hseq>MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVAGWL-EDPGEALQGSAAAAAPAAPAAEDPVAETPAPVASAPATPWPLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVSSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDGLAPPQHLIRVEGNMHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPQPKRKTLDGEYFTLKIRGQERFKMFQELNEALELKDAQALKASEDSGAHSSYLKSKKGQSASRLKKLMIKREGPDSD</Hsp_hseq>
|
|
410
|
+
<Hsp_midline>MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LPS ++++L LS +++ W EDPG WPLSSSVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ DGLAPPQHLIRVEGN+ EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP ELPP S KRALP NTSSSPQPK+K LDGEYFTL+IRG+ERF+MF+ELNEALELKDAQA K S AHSS+LKSKKGQS SR KKLM K EGPDSD</Hsp_midline>
|
|
411
|
+
</Hsp>
|
|
412
|
+
</Hit_hsps>
|
|
413
|
+
</Hit>
|
|
414
|
+
<Hit>
|
|
415
|
+
<Hit_num>15</Hit_num>
|
|
416
|
+
<Hit_id>gnl|BL_ORD_ID|8</Hit_id>
|
|
417
|
+
<Hit_def>P53_CRIGR O09185 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
418
|
+
<Hit_accession>8</Hit_accession>
|
|
419
|
+
<Hit_len>393</Hit_len>
|
|
420
|
+
<Hit_hsps>
|
|
421
|
+
<Hsp>
|
|
422
|
+
<Hsp_num>1</Hsp_num>
|
|
423
|
+
<Hsp_bit-score>594.349</Hsp_bit-score>
|
|
424
|
+
<Hsp_score>1531</Hsp_score>
|
|
425
|
+
<Hsp_evalue>3.94446e-173</Hsp_evalue>
|
|
426
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
427
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
428
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
429
|
+
<Hsp_hit-to>393</Hsp_hit-to>
|
|
430
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
431
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
432
|
+
<Hsp_identity>296</Hsp_identity>
|
|
433
|
+
<Hsp_positive>321</Hsp_positive>
|
|
434
|
+
<Hsp_gaps>2</Hsp_gaps>
|
|
435
|
+
<Hsp_align-len>394</Hsp_align-len>
|
|
436
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQ-AMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
437
|
+
<Hsp_hseq>MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVTGWLEDSGGALQGVAAAAASTAEDPVTETPAPVASAPATPWPLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVNSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDSLAPPQHLIRVEGNLHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPPPKKKTLDGEYFTLKIRGHERFKMFQELNEALELKDAQASKGSEDNGAHSSYLKSKKGQSASRLKKLMIKREGPDSD</Hsp_hseq>
|
|
438
|
+
<Hsp_midline>MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LPS ++++L LS +++ W + G + WPLSSSVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV+STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ D LAPPQHLIRVEGNL EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP ELPP S KRALP NTSSSP PKKK LDGEYFTL+IRG ERF+MF+ELNEALELKDAQA K + AHSS+LKSKKGQS SR KKLM K EGPDSD</Hsp_midline>
|
|
439
|
+
</Hsp>
|
|
440
|
+
</Hit_hsps>
|
|
441
|
+
</Hit>
|
|
442
|
+
<Hit>
|
|
443
|
+
<Hit_num>16</Hit_num>
|
|
444
|
+
<Hit_id>gnl|BL_ORD_ID|2</Hit_id>
|
|
445
|
+
<Hit_def>P53_BOVIN P67939 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
446
|
+
<Hit_accession>2</Hit_accession>
|
|
447
|
+
<Hit_len>386</Hit_len>
|
|
448
|
+
<Hit_hsps>
|
|
449
|
+
<Hsp>
|
|
450
|
+
<Hsp_num>1</Hsp_num>
|
|
451
|
+
<Hsp_bit-score>588.956</Hsp_bit-score>
|
|
452
|
+
<Hsp_score>1517</Hsp_score>
|
|
453
|
+
<Hsp_evalue>1.65722e-171</Hsp_evalue>
|
|
454
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
455
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
456
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
457
|
+
<Hsp_hit-to>386</Hsp_hit-to>
|
|
458
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
459
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
460
|
+
<Hsp_identity>299</Hsp_identity>
|
|
461
|
+
<Hsp_positive>318</Hsp_positive>
|
|
462
|
+
<Hsp_gaps>9</Hsp_gaps>
|
|
463
|
+
<Hsp_align-len>394</Hsp_align-len>
|
|
464
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
465
|
+
<Hsp_hseq>MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWLDECPNE-------APQMPEPSAPAAPPPATPAPATSWPLSSFVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD</Hsp_hseq>
|
|
466
|
+
<Hsp_midline>MEE Q++ +VEPPLSQETFSDLW LLPENN+LS S +DDL L D+ W E P SWPLSS VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+ E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA G+EPG SRAHSSHLKSKK S S HKK M K EGPDSD</Hsp_midline>
|
|
467
|
+
</Hsp>
|
|
468
|
+
</Hit_hsps>
|
|
469
|
+
</Hit>
|
|
470
|
+
<Hit>
|
|
471
|
+
<Hit_num>17</Hit_num>
|
|
472
|
+
<Hit_id>gnl|BL_ORD_ID|1</Hit_id>
|
|
473
|
+
<Hit_def>P53_BOSIN P67938 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
474
|
+
<Hit_accession>1</Hit_accession>
|
|
475
|
+
<Hit_len>386</Hit_len>
|
|
476
|
+
<Hit_hsps>
|
|
477
|
+
<Hsp>
|
|
478
|
+
<Hsp_num>1</Hsp_num>
|
|
479
|
+
<Hsp_bit-score>588.956</Hsp_bit-score>
|
|
480
|
+
<Hsp_score>1517</Hsp_score>
|
|
481
|
+
<Hsp_evalue>1.65722e-171</Hsp_evalue>
|
|
482
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
483
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
484
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
485
|
+
<Hsp_hit-to>386</Hsp_hit-to>
|
|
486
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
487
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
488
|
+
<Hsp_identity>299</Hsp_identity>
|
|
489
|
+
<Hsp_positive>318</Hsp_positive>
|
|
490
|
+
<Hsp_gaps>9</Hsp_gaps>
|
|
491
|
+
<Hsp_align-len>394</Hsp_align-len>
|
|
492
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
493
|
+
<Hsp_hseq>MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWLDECPNE-------APQMPEPSAPAAPPPATPAPATSWPLSSFVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD</Hsp_hseq>
|
|
494
|
+
<Hsp_midline>MEE Q++ +VEPPLSQETFSDLW LLPENN+LS S +DDL L D+ W E P SWPLSS VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+ E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA G+EPG SRAHSSHLKSKK S S HKK M K EGPDSD</Hsp_midline>
|
|
495
|
+
</Hsp>
|
|
496
|
+
</Hit_hsps>
|
|
497
|
+
</Hit>
|
|
498
|
+
<Hit>
|
|
499
|
+
<Hit_num>18</Hit_num>
|
|
500
|
+
<Hit_id>gnl|BL_ORD_ID|26</Hit_id>
|
|
501
|
+
<Hit_def>P53_RAT P10361 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
502
|
+
<Hit_accession>26</Hit_accession>
|
|
503
|
+
<Hit_len>391</Hit_len>
|
|
504
|
+
<Hit_hsps>
|
|
505
|
+
<Hsp>
|
|
506
|
+
<Hsp_num>1</Hsp_num>
|
|
507
|
+
<Hsp_bit-score>575.859</Hsp_bit-score>
|
|
508
|
+
<Hsp_score>1483</Hsp_score>
|
|
509
|
+
<Hsp_evalue>1.4518e-167</Hsp_evalue>
|
|
510
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
511
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
512
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
513
|
+
<Hsp_hit-to>391</Hsp_hit-to>
|
|
514
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
515
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
516
|
+
<Hsp_identity>295</Hsp_identity>
|
|
517
|
+
<Hsp_positive>317</Hsp_positive>
|
|
518
|
+
<Hsp_gaps>8</Hsp_gaps>
|
|
519
|
+
<Hsp_align-len>396</Hsp_align-len>
|
|
520
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPS---QAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
521
|
+
<Hsp_hseq>MEDSQSDMSIELPLSQETFSCLWKLLPPDDILPTTATGSPNSMEDLFL-PQDVAELLE---GPEEALQVSAPAAQEPGTEAPAPVAPASATP-WPLSSSVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSISLNKLFCQLAKTCPVQLWVTSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNPYAEYLDDRQTFRHSVVVPYEPPEVGSDYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEEHCPELPPGSAKRALPTSTSSSPQQKKKPLDGEYFTLKIRGRERFEMFRELNEALELKDARAAEESGDSRAHSSYPKTKKGQSTSRHKKPMIKKVGPDSD</Hsp_hseq>
|
|
522
|
+
<Hsp_midline>ME+ QSD S+E PLSQETFS LWKLLP +++L + +M+DL L P D+ + GP+E WPLSSSVPSQKTYQG+YGF LGFL SGTAKSV CTYS +LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGN EYLDDR TFRHSVVVPYEPPEVGSD TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK E ELPPGS KRALP +TSSSPQ KKKPLDGEYFTL+IRGRERFEMFRELNEALELKDA+A +E G SRAHSS+ K+KKGQSTSRHKK M K GPDSD</Hsp_midline>
|
|
523
|
+
</Hsp>
|
|
524
|
+
</Hit_hsps>
|
|
525
|
+
</Hit>
|
|
526
|
+
<Hit>
|
|
527
|
+
<Hit_num>19</Hit_num>
|
|
528
|
+
<Hit_id>gnl|BL_ORD_ID|20</Hit_id>
|
|
529
|
+
<Hit_def>P53_MOUSE P02340 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
530
|
+
<Hit_accession>20</Hit_accession>
|
|
531
|
+
<Hit_len>390</Hit_len>
|
|
532
|
+
<Hit_hsps>
|
|
533
|
+
<Hsp>
|
|
534
|
+
<Hsp_num>1</Hsp_num>
|
|
535
|
+
<Hsp_bit-score>574.318</Hsp_bit-score>
|
|
536
|
+
<Hsp_score>1479</Hsp_score>
|
|
537
|
+
<Hsp_evalue>4.22408e-167</Hsp_evalue>
|
|
538
|
+
<Hsp_query-from>1</Hsp_query-from>
|
|
539
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
540
|
+
<Hsp_hit-from>4</Hsp_hit-from>
|
|
541
|
+
<Hsp_hit-to>390</Hsp_hit-to>
|
|
542
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
543
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
544
|
+
<Hsp_identity>293</Hsp_identity>
|
|
545
|
+
<Hsp_positive>314</Hsp_positive>
|
|
546
|
+
<Hsp_gaps>6</Hsp_gaps>
|
|
547
|
+
<Hsp_align-len>393</Hsp_align-len>
|
|
548
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
549
|
+
<Hsp_hseq>MEESQSDISLELPLSQETFSGLWKLLPPEDIL-PSP-HCMDDLLL-PQDVEEFFE---GPSEALRVSGAPAAQDPVTETPGPVAPAPATPWPLSSFVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEVLCPELPPGSAKRALPTCTSASPPQKKKPLDGEYFTLKIRGRKRFEMFRELNEALELKDAHATEESGDSRAHSSYLKTKKGQSTSRHKKTMVKKVGPDSD</Hsp_hseq>
|
|
550
|
+
<Hsp_midline>MEE QSD S+E PLSQETFS LWKLLP ++L P P MDDL+L P D+E++F GP E WPLSS VPSQKTYQG+YGF LGFL SGTAKSV CTYSP LNK+FCQLAKTCPVQLWV +TPP G+RVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGNL EYL+DR TFRHSVVVPYEPPE GS+ TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK ELPPGS KRALP TS+SP KKKPLDGEYFTL+IRGR+RFEMFRELNEALELKDA A +E G SRAHSS+LK+KKGQSTSRHKK M K GPDSD</Hsp_midline>
|
|
551
|
+
</Hsp>
|
|
552
|
+
</Hit_hsps>
|
|
553
|
+
</Hit>
|
|
554
|
+
<Hit>
|
|
555
|
+
<Hit_num>20</Hit_num>
|
|
556
|
+
<Hit_id>gnl|BL_ORD_ID|28</Hit_id>
|
|
557
|
+
<Hit_def>P53_SPEBE Q64662 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
|
|
558
|
+
<Hit_accession>28</Hit_accession>
|
|
559
|
+
<Hit_len>314</Hit_len>
|
|
560
|
+
<Hit_hsps>
|
|
561
|
+
<Hsp>
|
|
562
|
+
<Hsp_num>1</Hsp_num>
|
|
563
|
+
<Hsp_bit-score>530.02</Hsp_bit-score>
|
|
564
|
+
<Hsp_score>1364</Hsp_score>
|
|
565
|
+
<Hsp_evalue>9.13575e-154</Hsp_evalue>
|
|
566
|
+
<Hsp_query-from>21</Hsp_query-from>
|
|
567
|
+
<Hsp_query-to>335</Hsp_query-to>
|
|
568
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
569
|
+
<Hsp_hit-to>313</Hsp_hit-to>
|
|
570
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
571
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
572
|
+
<Hsp_identity>256</Hsp_identity>
|
|
573
|
+
<Hsp_positive>268</Hsp_positive>
|
|
574
|
+
<Hsp_gaps>2</Hsp_gaps>
|
|
575
|
+
<Hsp_align-len>315</Hsp_align-len>
|
|
576
|
+
<Hsp_qseq>DLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGR</Hsp_qseq>
|
|
577
|
+
<Hsp_hseq>DLWNLLPENNVLSPVLSPPMDDLLLSSEDVENWF--DKGPDEALQMSAAPAPKAPTPAASTLAAPTPAISWPLSSSVPSQNTYPGVYGFRLGFIHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSESTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKRGEPCPEPPPGSTKRALPTGTNSSPQPKKKPLDGEYFTLKIRGR</Hsp_hseq>
|
|
578
|
+
<Hsp_midline>DLW LLPENNVLSP+ S MDDL+LS +D+E WF D GPDE SWPLSSSVPSQ TY G YGFRLGF+HSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGS+ TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RK+GEP E PPGSTKRALP T+SSPQPKKKPLDGEYFTL+IRGR</Hsp_midline>
|
|
579
|
+
</Hsp>
|
|
580
|
+
</Hit_hsps>
|
|
581
|
+
</Hit>
|
|
582
|
+
<Hit>
|
|
583
|
+
<Hit_num>21</Hit_num>
|
|
584
|
+
<Hit_id>gnl|BL_ORD_ID|12</Hit_id>
|
|
585
|
+
<Hit_def>P53_HORSE P79892 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
|
|
586
|
+
<Hit_accession>12</Hit_accession>
|
|
587
|
+
<Hit_len>280</Hit_len>
|
|
588
|
+
<Hit_hsps>
|
|
589
|
+
<Hsp>
|
|
590
|
+
<Hsp_num>1</Hsp_num>
|
|
591
|
+
<Hsp_bit-score>448.743</Hsp_bit-score>
|
|
592
|
+
<Hsp_score>1153</Hsp_score>
|
|
593
|
+
<Hsp_evalue>2.67666e-129</Hsp_evalue>
|
|
594
|
+
<Hsp_query-from>39</Hsp_query-from>
|
|
595
|
+
<Hsp_query-to>329</Hsp_query-to>
|
|
596
|
+
<Hsp_hit-from>2</Hsp_hit-from>
|
|
597
|
+
<Hsp_hit-to>280</Hsp_hit-to>
|
|
598
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
599
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
600
|
+
<Hsp_identity>227</Hsp_identity>
|
|
601
|
+
<Hsp_positive>238</Hsp_positive>
|
|
602
|
+
<Hsp_gaps>14</Hsp_gaps>
|
|
603
|
+
<Hsp_align-len>292</Hsp_align-len>
|
|
604
|
+
<Hsp_qseq>AMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFT</Hsp_qseq>
|
|
605
|
+
<Hsp_hseq>AVNNLLLSPD-VVNWL--DEGPDEAPRMPAAPAPLAPAPAT----------SWPLSSFVPSQKTYPGCYGFRLGFLNSGTAKSVTCTYSPTLNKLFCQLAKTCPVQLLVSSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKEEPCPEPPPRSTKRVLSSNTSSSPPQKKKPLDGEYFT</Hsp_hseq>
|
|
606
|
+
<Hsp_midline>A+++L+LSPD + W D GPDE SWPLSS VPSQKTY G YGFRLGFL+SGTAKSVTCTYSP LNK+FCQLAKTCPVQL V S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKK EP E PP STKR L +NTSSSP KKKPLDGEYFT</Hsp_midline>
|
|
607
|
+
</Hsp>
|
|
608
|
+
</Hit_hsps>
|
|
609
|
+
</Hit>
|
|
610
|
+
<Hit>
|
|
611
|
+
<Hit_num>22</Hit_num>
|
|
612
|
+
<Hit_id>gnl|BL_ORD_ID|10</Hit_id>
|
|
613
|
+
<Hit_def>P53_EQUAS Q29480 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
|
|
614
|
+
<Hit_accession>10</Hit_accession>
|
|
615
|
+
<Hit_len>207</Hit_len>
|
|
616
|
+
<Hit_hsps>
|
|
617
|
+
<Hsp>
|
|
618
|
+
<Hsp_num>1</Hsp_num>
|
|
619
|
+
<Hsp_bit-score>374.015</Hsp_bit-score>
|
|
620
|
+
<Hsp_score>959</Hsp_score>
|
|
621
|
+
<Hsp_evalue>8.37873e-107</Hsp_evalue>
|
|
622
|
+
<Hsp_query-from>126</Hsp_query-from>
|
|
623
|
+
<Hsp_query-to>330</Hsp_query-to>
|
|
624
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
|
625
|
+
<Hsp_hit-to>206</Hsp_hit-to>
|
|
626
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
627
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
628
|
+
<Hsp_identity>181</Hsp_identity>
|
|
629
|
+
<Hsp_positive>187</Hsp_positive>
|
|
630
|
+
<Hsp_gaps>1</Hsp_gaps>
|
|
631
|
+
<Hsp_align-len>206</Hsp_align-len>
|
|
632
|
+
<Hsp_qseq>YSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTL</Hsp_qseq>
|
|
633
|
+
<Hsp_hseq>YSPALNKMFCQLAKTCPVYLRISSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTLRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKEEPCPEPPPRSTKRVLSSNTSSSPPQKEDPLDGEYFTL</Hsp_hseq>
|
|
634
|
+
<Hsp_midline>YSPALNKMFCQLAKTCPV L + S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR EYLDDRNT RHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKK EP E PP STKR L +NTSSSP K+ PLDGEYFTL</Hsp_midline>
|
|
635
|
+
</Hsp>
|
|
636
|
+
</Hit_hsps>
|
|
637
|
+
</Hit>
|
|
638
|
+
<Hit>
|
|
639
|
+
<Hit_num>23</Hit_num>
|
|
640
|
+
<Hit_id>gnl|BL_ORD_ID|7</Hit_id>
|
|
641
|
+
<Hit_def>P53_CHICK P10360 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
642
|
+
<Hit_accession>7</Hit_accession>
|
|
643
|
+
<Hit_len>367</Hit_len>
|
|
644
|
+
<Hit_hsps>
|
|
645
|
+
<Hsp>
|
|
646
|
+
<Hsp_num>1</Hsp_num>
|
|
647
|
+
<Hsp_bit-score>355.91</Hsp_bit-score>
|
|
648
|
+
<Hsp_score>912</Hsp_score>
|
|
649
|
+
<Hsp_evalue>2.36124e-101</Hsp_evalue>
|
|
650
|
+
<Hsp_query-from>5</Hsp_query-from>
|
|
651
|
+
<Hsp_query-to>386</Hsp_query-to>
|
|
652
|
+
<Hsp_hit-from>4</Hsp_hit-from>
|
|
653
|
+
<Hsp_hit-to>364</Hsp_hit-to>
|
|
654
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
655
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
656
|
+
<Hsp_identity>197</Hsp_identity>
|
|
657
|
+
<Hsp_positive>240</Hsp_positive>
|
|
658
|
+
<Hsp_gaps>27</Hsp_gaps>
|
|
659
|
+
<Hsp_align-len>385</Hsp_align-len>
|
|
660
|
+
<Hsp_qseq>QSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFK</Hsp_qseq>
|
|
661
|
+
<Hsp_hseq>EMEPLLEPT---EVFMDLWSMLPYSMQQLPLPEDHSNWQELSPLE-----PSDPPPPPPPPPLPLAAAAPPPLNPPTPPRAAP------SPVVPSTEDYGGDFDFRVGFVEAGTAKSVTCTYSPVLNKVYCRLAKPCPVQVRVGVAPPPGSSLRAVAVYKKSEHVAEVVRRCPHHERCGGGTDGLAPAQHLIRVEGNPQARYHDDETTKRHSVVVPYEPPEVGSDCTTVLYNFMCNSSCMGGMNRRPILTILTLEGPGGQLLGRRCFEVRVCACPGRDRKIEEENFRKRGG-----AGGVAKRAMSPPTEAPEPPKKRVLNPDNEIFYLQVRGRRRYEMLKEINEALQL--AEGGSAPRPSKGRRVKV---EGPQPSCGKKLLQK</Hsp_hseq>
|
|
662
|
+
<Hsp_midline>+ +P +EP E F DLW +LP + PLP + LSP + DP P S VPS + Y G + FR+GF+ +GTAKSVTCTYSP LNK++C+LAK CPVQ+ V PPPG+ +RA+A+YK+S+H+ EVVRRCPHHERC +DGLAP QHLIRVEGN + Y DD T RHSVVVPYEPPEVGSDCTT+ YN+MCNSSCMGGMNRRPILTI+TLE G LLGR FEVRVCACPGRDR+ EEEN RK+G G KRA+ T + PKK+ L D E F LQ+RGR R+EM +E+NEAL+L A+ G P S+ + +G S KKL+ K</Hsp_midline>
|
|
663
|
+
</Hsp>
|
|
664
|
+
</Hit_hsps>
|
|
665
|
+
</Hit>
|
|
666
|
+
<Hit>
|
|
667
|
+
<Hit_num>24</Hit_num>
|
|
668
|
+
<Hit_id>gnl|BL_ORD_ID|21</Hit_id>
|
|
669
|
+
<Hit_def>P53_ONCMY P25035 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
670
|
+
<Hit_accession>21</Hit_accession>
|
|
671
|
+
<Hit_len>396</Hit_len>
|
|
672
|
+
<Hit_hsps>
|
|
673
|
+
<Hsp>
|
|
674
|
+
<Hsp_num>1</Hsp_num>
|
|
675
|
+
<Hsp_bit-score>343.969</Hsp_bit-score>
|
|
676
|
+
<Hsp_score>881</Hsp_score>
|
|
677
|
+
<Hsp_evalue>9.28528e-98</Hsp_evalue>
|
|
678
|
+
<Hsp_query-from>9</Hsp_query-from>
|
|
679
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
680
|
+
<Hsp_hit-from>7</Hsp_hit-from>
|
|
681
|
+
<Hsp_hit-to>396</Hsp_hit-to>
|
|
682
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
683
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
684
|
+
<Hsp_identity>194</Hsp_identity>
|
|
685
|
+
<Hsp_positive>245</Hsp_positive>
|
|
686
|
+
<Hsp_gaps>33</Hsp_gaps>
|
|
687
|
+
<Hsp_align-len>404</Hsp_align-len>
|
|
688
|
+
<Hsp_qseq>SVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTED----PGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHEL---PPGSTKRALPNNTSSSPQP------KKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKK---GQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
689
|
+
<Hsp_hseq>NVSLPLSQESFEDLWKM-------------NLNLVAVQPPETESWVGYDNFMMEAPLQVEFDPSLFEVSATEPAPQPSISTLDTGS-PPTSTVPTTSDYPGALGFQLRFLQSSTAKSVTCTYSPDLNKLFCQLAKTCPVQIVVDHPPPPGAVVRALAIYKKLSDVADVVRRCPHHQSTSENNEGPAPRGHLVRVEGNQRSEYMEDGNTLRHSVLVPYEPPQVGSECTTVLYNFMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEEINLKKQQETTLETKTKPAQGIKRAMKEASLPAPQPGASKKTKSSPAVSDDEIYTLQIRGKEKYEMLKKFNDSLELSELVPVADADKYRQKCLTKRVAKRDFGVGPKKRKKLLVKEEKSDSD</Hsp_hseq>
|
|
690
|
+
<Hsp_midline>+V PLSQE+F DLWK+ ++ + + P + E W D P + S P +S+VP+ Y G+ GF+L FL S TAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD PPPG VRA+AIYK+ + +VVRRCPHH+ S++ +G AP HL+RVEGN R EY++D NT RHSV+VPYEPP+VGS+CTT+ YN+MCNSSCMGGMNRRPILTIITLE G LLGR SFEVRVCACPGRDR+TEE NL+K+ E E P KRA+ + +PQP K P D E +TLQIRG+E++EM ++ N++LEL + + R + K G + KKL+ K E DSD</Hsp_midline>
|
|
691
|
+
</Hsp>
|
|
692
|
+
</Hit_hsps>
|
|
693
|
+
</Hit>
|
|
694
|
+
<Hit>
|
|
695
|
+
<Hit_num>25</Hit_num>
|
|
696
|
+
<Hit_id>gnl|BL_ORD_ID|0</Hit_id>
|
|
697
|
+
<Hit_def>P53_BARBU Q9W678 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
698
|
+
<Hit_accession>0</Hit_accession>
|
|
699
|
+
<Hit_len>369</Hit_len>
|
|
700
|
+
<Hit_hsps>
|
|
701
|
+
<Hsp>
|
|
702
|
+
<Hsp_num>1</Hsp_num>
|
|
703
|
+
<Hsp_bit-score>341.658</Hsp_bit-score>
|
|
704
|
+
<Hsp_score>875</Hsp_score>
|
|
705
|
+
<Hsp_evalue>4.60823e-97</Hsp_evalue>
|
|
706
|
+
<Hsp_query-from>92</Hsp_query-from>
|
|
707
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
708
|
+
<Hsp_hit-from>56</Hsp_hit-from>
|
|
709
|
+
<Hsp_hit-to>369</Hsp_hit-to>
|
|
710
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
711
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
712
|
+
<Hsp_identity>181</Hsp_identity>
|
|
713
|
+
<Hsp_positive>219</Hsp_positive>
|
|
714
|
+
<Hsp_gaps>12</Hsp_gaps>
|
|
715
|
+
<Hsp_align-len>314</Hsp_align-len>
|
|
716
|
+
<Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPH--HELPPGSTKRALPNNTSSSPQP---KKKPLDG----EYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAH-SSHLKSKKGQS--TSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
717
|
+
<Hsp_hseq>PPTASVPVATDYPGEHGFKLGFPQSGTAKSVTCTYSSDLNKLFCQLAKTCPVQMVVNVAPPQGSVIRATAIYKKSEHVAEVVRRCPHHERTPDGDGLAPAAHLIRVEGNSRALYREDDVNSRHSVVVPYEVPQLGSEFTTVLYNFMCNSSCMGGMNRRPILTIISLETHDGQLLGRRSFEVRVCACPGRDRKTEESNFRKDQETKTLDKIPSANKRSLTKDSTSSVPRPEGSKKAKLSGSSDEEIYTLQVRGKERYEMLKKINDSLELSDVVPPSEMDRYRQKLLTKGKKKDGQTPEPKRGKKLMVKDEKSDSD</Hsp_hseq>
|
|
718
|
+
<Hsp_midline>P ++SVP Y G +GF+LGF SGTAKSVTCTYS LNK+FCQLAKTCPVQ+ V+ PP G+ +RA AIYK+S+H+ EVVRRCPHHER D DGLAP HLIRVEGN R Y +D RHSVVVPYE P++GS+ TT+ YN+MCNSSCMGGMNRRPILTII+LE G LLGR SFEVRVCACPGRDR+TEE N RK E ++P + + ++TSS P+P KK L G E +TLQ+RG+ER+EM +++N++LEL D E R + K K GQ+ R KKLM K E DSD</Hsp_midline>
|
|
719
|
+
</Hsp>
|
|
720
|
+
</Hit_hsps>
|
|
721
|
+
</Hit>
|
|
722
|
+
<Hit>
|
|
723
|
+
<Hit_num>26</Hit_num>
|
|
724
|
+
<Hit_id>gnl|BL_ORD_ID|3</Hit_id>
|
|
725
|
+
<Hit_def>P53_BRARE P79734 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
726
|
+
<Hit_accession>3</Hit_accession>
|
|
727
|
+
<Hit_len>373</Hit_len>
|
|
728
|
+
<Hit_hsps>
|
|
729
|
+
<Hsp>
|
|
730
|
+
<Hsp_num>1</Hsp_num>
|
|
731
|
+
<Hsp_bit-score>338.576</Hsp_bit-score>
|
|
732
|
+
<Hsp_score>867</Hsp_score>
|
|
733
|
+
<Hsp_evalue>3.9011e-96</Hsp_evalue>
|
|
734
|
+
<Hsp_query-from>92</Hsp_query-from>
|
|
735
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
736
|
+
<Hsp_hit-from>60</Hsp_hit-from>
|
|
737
|
+
<Hsp_hit-to>373</Hsp_hit-to>
|
|
738
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
739
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
740
|
+
<Hsp_identity>181</Hsp_identity>
|
|
741
|
+
<Hsp_positive>215</Hsp_positive>
|
|
742
|
+
<Hsp_gaps>12</Hsp_gaps>
|
|
743
|
+
<Hsp_align-len>314</Hsp_align-len>
|
|
744
|
+
<Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGS-TKRALPNNTSSS---PQPKKK----PLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTS---RHKKLMFKTEG-PDSD</Hsp_qseq>
|
|
745
|
+
<Hsp_hseq>PPTSTVPETSDYPGDHGFRLRFPQSGTAKSVTCTYSPDLNKLFCQLAKTCPVQMVVDVAPPQGSVVRATAIYKKSEHVAEVVRRCPHHERTPDGDNLAPAGHLIRVEGNQRANYREDNITLRHSVFVPYEAPQLGAEWTTVLLNYMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEESNFKKDQETKTMAKTTTGTKRSLVKESSSATLRPEGSKKAKGSSSDEEIFTLQVRGRERYEILKKLNDSLELSDVVPASDAEKYRQKFMTKNKKENRESSEPKQGKKLMVKDEGRSDSD</Hsp_hseq>
|
|
746
|
+
<Hsp_midline>P +S+VP Y G +GFRL F SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD PP G+ VRA AIYK+S+H+ EVVRRCPHHER D D LAP HLIRVEGN R Y +D T RHSV VPYE P++G++ TT+ NYMCNSSCMGGMNRRPILTIITLE G LLGR SFEVRVCACPGRDR+TEE N +K E + TKR+L +SS+ P+ KK D E FTLQ+RGRER+E+ ++LN++LEL D + R K+ + +S + KKLM K EG DSD</Hsp_midline>
|
|
747
|
+
</Hsp>
|
|
748
|
+
</Hit_hsps>
|
|
749
|
+
</Hit>
|
|
750
|
+
<Hit>
|
|
751
|
+
<Hit_num>27</Hit_num>
|
|
752
|
+
<Hit_id>gnl|BL_ORD_ID|14</Hit_id>
|
|
753
|
+
<Hit_def>P53_ICTPU O93379 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
754
|
+
<Hit_accession>14</Hit_accession>
|
|
755
|
+
<Hit_len>376</Hit_len>
|
|
756
|
+
<Hit_hsps>
|
|
757
|
+
<Hsp>
|
|
758
|
+
<Hsp_num>1</Hsp_num>
|
|
759
|
+
<Hsp_bit-score>333.183</Hsp_bit-score>
|
|
760
|
+
<Hsp_score>853</Hsp_score>
|
|
761
|
+
<Hsp_evalue>1.63901e-94</Hsp_evalue>
|
|
762
|
+
<Hsp_query-from>10</Hsp_query-from>
|
|
763
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
764
|
+
<Hsp_hit-from>12</Hsp_hit-from>
|
|
765
|
+
<Hsp_hit-to>376</Hsp_hit-to>
|
|
766
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
767
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
768
|
+
<Hsp_identity>192</Hsp_identity>
|
|
769
|
+
<Hsp_positive>240</Hsp_positive>
|
|
770
|
+
<Hsp_gaps>41</Hsp_gaps>
|
|
771
|
+
<Hsp_align-len>395</Hsp_align-len>
|
|
772
|
+
<Hsp_qseq>VEPPLSQETFSDLW--KLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRAL---PNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDA--QAGKEPGGSRAHSSHLKSKKGQST---SRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
773
|
+
<Hsp_hseq>VEPPDSQE-FAELWLRNLIVRDNSLWGKEEEIPDDLQEVPCDVLLSDMLQPQSS----------------------------SSPPTSTVPVTSDYPGLLNFTLHFQESSGTKSVTCTYSPDLNKLFCQLAKTCPVLMAVSSSPPPGSVLRATAVYKRSEHVAEVVRRCPHHERSNDSSDGPAPPGHLLRVEGNSRAVYQEDGNTQAHSVVVPYEPPQVGSQSTTVLYNYMCNSSCMGGMNRRPILTIITLETQDGHLLGRRTFEVRVCACPGRDRKTEESNFKKQQEPKTS-GKTLTKRSMKDPPSHPEASKKSKNSSSDDEIYTLQVRGKERYEFLKKINDGLELSDVVPPADQEKYRQKLLSKTCRKERDGAAGEPKRGKKRLVKEEKCDSD</Hsp_hseq>
|
|
774
|
+
<Hsp_midline>VEPP SQE F++LW L+ +N L + DDL P D+ P S P +S+VP Y G F L F S KSVTCTYSP LNK+FCQLAKTCPV + V S+PPPG+ +RA A+YK+S+H+ EVVRRCPHHER +DS DG APP HL+RVEGN R Y +D NT HSVVVPYEPP+VGS TT+ YNYMCNSSCMGGMNRRPILTIITLE G+LLGR +FEVRVCACPGRDR+TEE N +K+ EP TKR++ P++ +S + K D E +TLQ+RG+ER+E +++N+ LEL D A +E + S + ++ + R KK + K E DSD</Hsp_midline>
|
|
775
|
+
</Hsp>
|
|
776
|
+
</Hit_hsps>
|
|
777
|
+
</Hit>
|
|
778
|
+
<Hit>
|
|
779
|
+
<Hit_num>28</Hit_num>
|
|
780
|
+
<Hit_id>gnl|BL_ORD_ID|29</Hit_id>
|
|
781
|
+
<Hit_def>P53_TETMU Q9W679 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
782
|
+
<Hit_accession>29</Hit_accession>
|
|
783
|
+
<Hit_len>367</Hit_len>
|
|
784
|
+
<Hit_hsps>
|
|
785
|
+
<Hsp>
|
|
786
|
+
<Hsp_num>1</Hsp_num>
|
|
787
|
+
<Hsp_bit-score>267.7</Hsp_bit-score>
|
|
788
|
+
<Hsp_score>683</Hsp_score>
|
|
789
|
+
<Hsp_evalue>8.45682e-75</Hsp_evalue>
|
|
790
|
+
<Hsp_query-from>7</Hsp_query-from>
|
|
791
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
792
|
+
<Hsp_hit-from>3</Hsp_hit-from>
|
|
793
|
+
<Hsp_hit-to>367</Hsp_hit-to>
|
|
794
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
795
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
796
|
+
<Hsp_identity>159</Hsp_identity>
|
|
797
|
+
<Hsp_positive>220</Hsp_positive>
|
|
798
|
+
<Hsp_gaps>32</Hsp_gaps>
|
|
799
|
+
<Hsp_align-len>392</Hsp_align-len>
|
|
800
|
+
<Hsp_qseq>DPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKK-----KPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
801
|
+
<Hsp_hseq>EENISLPLSQDTFQDLW-----DNVSAP----PISTIQTAALENEAWPAERQMNMMCNFMDSTFNEALFNLLPEPPSRDGANSSSP---TVPVTTDYPGEYGFKLRFQKSGTAKSVTSTYSEILNKLYCQLAKTSLVEVLLGKDPPMGAVLRATAIYKKTEHVAEVVRRCPHHQ---NEDSAEHRSHLIRMEGSERAQYFEHPHTKRQSVTVPYEPPQLGSEFTTILLSFMCNSSCMGGMNRRPILTILTLETQEGIVLGRRCFEVRVCACPGRDRKTEETNSTKM---QNDAKDAKKRKSVPTPDSTTIKKSKTASSAEEDNNEVYTLQIRGRKRYEMLKKINDGLDLLE----NKPKSKATH-----RPDGPIPPSGKRLLHRGEKSDSD</Hsp_hseq>
|
|
802
|
+
<Hsp_midline>+ ++ PLSQ+TF DLW +NV +P + + + + E W E S P +VP Y G YGF+L F SGTAKSVT TYS LNK++CQLAKT V++ + PP G +RA AIYK+++H+ EVVRRCPHH+ + D HLIR+EG+ R +Y + +T R SV VPYEPP++GS+ TTI ++MCNSSCMGGMNRRPILTI+TLE G +LGR FEVRVCACPGRDR+TEE N K ++ ++++P S++ + K + + E +TLQIRGR+R+EM +++N+ L+L + +P H G K+L+ + E DSD</Hsp_midline>
|
|
803
|
+
</Hsp>
|
|
804
|
+
</Hit_hsps>
|
|
805
|
+
</Hit>
|
|
806
|
+
<Hit>
|
|
807
|
+
<Hit_num>29</Hit_num>
|
|
808
|
+
<Hit_id>gnl|BL_ORD_ID|22</Hit_id>
|
|
809
|
+
<Hit_def>P53_ORYLA P79820 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
810
|
+
<Hit_accession>22</Hit_accession>
|
|
811
|
+
<Hit_len>352</Hit_len>
|
|
812
|
+
<Hit_hsps>
|
|
813
|
+
<Hsp>
|
|
814
|
+
<Hsp_num>1</Hsp_num>
|
|
815
|
+
<Hsp_bit-score>262.307</Hsp_bit-score>
|
|
816
|
+
<Hsp_score>669</Hsp_score>
|
|
817
|
+
<Hsp_evalue>3.55304e-73</Hsp_evalue>
|
|
818
|
+
<Hsp_query-from>92</Hsp_query-from>
|
|
819
|
+
<Hsp_query-to>371</Hsp_query-to>
|
|
820
|
+
<Hsp_hit-from>77</Hsp_hit-from>
|
|
821
|
+
<Hsp_hit-to>351</Hsp_hit-to>
|
|
822
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
823
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
824
|
+
<Hsp_identity>142</Hsp_identity>
|
|
825
|
+
<Hsp_positive>190</Hsp_positive>
|
|
826
|
+
<Hsp_gaps>21</Hsp_gaps>
|
|
827
|
+
<Hsp_align-len>288</Hsp_align-len>
|
|
828
|
+
<Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPK-----KKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQA---GKEPGGSRAHSSHLKS</Hsp_qseq>
|
|
829
|
+
<Hsp_hseq>PPPTTVPVTTDYPGSYELELRFQKSGTAKSVTSTYSETLNKLYCQLAKTSPIEVRVSKEPPKGAILRATAVYKKTEHVADVVRRCPHHQ---NEDSVEHRSHLIRVEGSQLAQYFEDPYTKRQSVTVPYEPPQPGSEMTTILLSYMCNSSCMGGMNRRPILTILTLE-TEGLVLGRRCFEVRICACPGRDRKTEEES-RQKTQP--------KKRKVTPNTSSSKRKKSHSSGEEEDNREVFHFEVYGRERYEFLKKINDGLELLEKESKSKNKDSGMVPSSGKKLKS</Hsp_hseq>
|
|
830
|
+
<Hsp_midline>P ++VP Y GSY L F SGTAKSVT TYS LNK++CQLAKT P+++ V PP G +RA A+YK+++H+ +VVRRCPHH+ + D + HLIRVEG+ +Y +D T R SV VPYEPP+ GS+ TTI +YMCNSSCMGGMNRRPILTI+TLE + G +LGR FEVR+CACPGRDR+TEEE+ R+K +P KR + NTSSS + K ++ + E F ++ GRER+E +++N+ LEL + ++ K+ G + LKS</Hsp_midline>
|
|
831
|
+
</Hsp>
|
|
832
|
+
</Hit_hsps>
|
|
833
|
+
</Hit>
|
|
834
|
+
<Hit>
|
|
835
|
+
<Hit_num>30</Hit_num>
|
|
836
|
+
<Hit_id>gnl|BL_ORD_ID|24</Hit_id>
|
|
837
|
+
<Hit_def>P53_PLAFE O12946 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
|
838
|
+
<Hit_accession>24</Hit_accession>
|
|
839
|
+
<Hit_len>366</Hit_len>
|
|
840
|
+
<Hit_hsps>
|
|
841
|
+
<Hsp>
|
|
842
|
+
<Hsp_num>1</Hsp_num>
|
|
843
|
+
<Hsp_bit-score>259.225</Hsp_bit-score>
|
|
844
|
+
<Hsp_score>661</Hsp_score>
|
|
845
|
+
<Hsp_evalue>3.00783e-72</Hsp_evalue>
|
|
846
|
+
<Hsp_query-from>92</Hsp_query-from>
|
|
847
|
+
<Hsp_query-to>393</Hsp_query-to>
|
|
848
|
+
<Hsp_hit-from>70</Hsp_hit-from>
|
|
849
|
+
<Hsp_hit-to>366</Hsp_hit-to>
|
|
850
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
|
851
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
|
852
|
+
<Hsp_identity>145</Hsp_identity>
|
|
853
|
+
<Hsp_positive>197</Hsp_positive>
|
|
854
|
+
<Hsp_gaps>23</Hsp_gaps>
|
|
855
|
+
<Hsp_align-len>311</Hsp_align-len>
|
|
856
|
+
<Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEE------NLRKKGEPHHELPPGS---TKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
|
857
|
+
<Hsp_hseq>PPSSTVPVVTDYPGEYGFQLRFQKSGTAKSVTSTFSELLKKLYCQLAKTSPVEVLLSKEPPQGAVLRATAVYKKTEHVADVVRRCPHHQT---EDTAEHRSHLIRLEGSQRALYFEDPHTKRQSVTVPYEPPQLGSETTAILLSFMCNSSCMGGMNRRQILTILTLETPDGLVLGRRCFEVRVCACPGRDRKTDEESSTKTPNGPKQTKKRKQAPSNSAPHTTTVMKSKSSSSAEEE----DKEVFTVLVKGRERYEIIKKINEAFE---GAAEKE----KAKNKVAVKQELPVPSSGKRLVQRGERSDSD</Hsp_hseq>
|
|
858
|
+
<Hsp_midline>P SS+VP Y G YGF+L F SGTAKSVT T+S L K++CQLAKT PV++ + PP G +RA A+YK+++H+ +VVRRCPHH+ D HLIR+EG+ R Y +D +T R SV VPYEPP++GS+ T I ++MCNSSCMGGMNRR ILTI+TLE G +LGR FEVRVCACPGRDR+T+EE N K+ + + P S T + + +SSS + + D E FT+ ++GRER+E+ +++NEA E A KE +A + ++ S K+L+ + E DSD</Hsp_midline>
|
|
859
|
+
</Hsp>
|
|
860
|
+
</Hit_hsps>
|
|
861
|
+
</Hit>
|
|
862
|
+
</Iteration_hits>
|
|
863
|
+
<Iteration_stat>
|
|
864
|
+
<Statistics>
|
|
865
|
+
<Statistics_db-num>30</Statistics_db-num>
|
|
866
|
+
<Statistics_db-len>11169</Statistics_db-len>
|
|
867
|
+
<Statistics_hsp-len>53</Statistics_hsp-len>
|
|
868
|
+
<Statistics_eff-space>3.25686e+06</Statistics_eff-space>
|
|
869
|
+
<Statistics_kappa>0.041</Statistics_kappa>
|
|
870
|
+
<Statistics_lambda>0.267</Statistics_lambda>
|
|
871
|
+
<Statistics_entropy>0.14</Statistics_entropy>
|
|
872
|
+
</Statistics>
|
|
873
|
+
</Iteration_stat>
|
|
874
|
+
</Iteration>
|
|
875
|
+
</BlastOutput_iterations>
|
|
876
|
+
</BlastOutput>
|