bio 1.0.0 → 1.1.0

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Files changed (340) hide show
  1. data/bin/bioruby +14 -122
  2. data/bin/br_biofetch.rb +2 -2
  3. data/bin/br_bioflat.rb +2 -2
  4. data/bin/br_biogetseq.rb +2 -2
  5. data/bin/br_pmfetch.rb +3 -3
  6. data/doc/Changes-0.7.rd +77 -0
  7. data/doc/KEGG_API.rd +523 -232
  8. data/doc/KEGG_API.rd.ja +529 -207
  9. data/doc/Tutorial.rd +48 -11
  10. data/lib/bio.rb +59 -6
  11. data/lib/bio/alignment.rb +713 -103
  12. data/lib/bio/appl/bl2seq/report.rb +2 -18
  13. data/lib/bio/appl/blast.rb +108 -91
  14. data/lib/bio/appl/blast/format0.rb +33 -18
  15. data/lib/bio/appl/blast/format8.rb +6 -20
  16. data/lib/bio/appl/blast/report.rb +293 -429
  17. data/lib/bio/appl/blast/rexml.rb +8 -22
  18. data/lib/bio/appl/blast/wublast.rb +21 -12
  19. data/lib/bio/appl/blast/xmlparser.rb +180 -183
  20. data/lib/bio/appl/blat/report.rb +127 -30
  21. data/lib/bio/appl/clustalw.rb +87 -59
  22. data/lib/bio/appl/clustalw/report.rb +20 -22
  23. data/lib/bio/appl/emboss.rb +113 -20
  24. data/lib/bio/appl/fasta.rb +173 -198
  25. data/lib/bio/appl/fasta/format10.rb +244 -347
  26. data/lib/bio/appl/gcg/msf.rb +212 -0
  27. data/lib/bio/appl/gcg/seq.rb +195 -0
  28. data/lib/bio/appl/genscan/report.rb +5 -23
  29. data/lib/bio/appl/hmmer.rb +8 -45
  30. data/lib/bio/appl/hmmer/report.rb +2 -20
  31. data/lib/bio/appl/iprscan/report.rb +374 -0
  32. data/lib/bio/appl/mafft.rb +87 -50
  33. data/lib/bio/appl/mafft/report.rb +151 -44
  34. data/lib/bio/appl/muscle.rb +52 -0
  35. data/lib/bio/appl/phylip/alignment.rb +129 -0
  36. data/lib/bio/appl/phylip/distance_matrix.rb +96 -0
  37. data/lib/bio/appl/probcons.rb +41 -0
  38. data/lib/bio/appl/psort.rb +89 -96
  39. data/lib/bio/appl/psort/report.rb +6 -22
  40. data/lib/bio/appl/pts1.rb +263 -0
  41. data/lib/bio/appl/sim4.rb +26 -36
  42. data/lib/bio/appl/sim4/report.rb +2 -18
  43. data/lib/bio/appl/sosui/report.rb +5 -20
  44. data/lib/bio/appl/spidey/report.rb +2 -2
  45. data/lib/bio/appl/targetp/report.rb +4 -20
  46. data/lib/bio/appl/tcoffee.rb +55 -0
  47. data/lib/bio/appl/tmhmm/report.rb +4 -20
  48. data/lib/bio/command.rb +235 -64
  49. data/lib/bio/data/aa.rb +21 -26
  50. data/lib/bio/data/codontable.rb +2 -20
  51. data/lib/bio/data/na.rb +19 -4
  52. data/lib/bio/db.rb +27 -12
  53. data/lib/bio/db/aaindex.rb +2 -20
  54. data/lib/bio/db/embl/common.rb +4 -21
  55. data/lib/bio/db/embl/embl.rb +33 -85
  56. data/lib/bio/db/embl/sptr.rb +612 -302
  57. data/lib/bio/db/embl/swissprot.rb +10 -29
  58. data/lib/bio/db/embl/trembl.rb +10 -29
  59. data/lib/bio/db/embl/uniprot.rb +10 -29
  60. data/lib/bio/db/fantom.rb +15 -20
  61. data/lib/bio/db/fasta.rb +3 -3
  62. data/lib/bio/db/genbank/common.rb +37 -46
  63. data/lib/bio/db/genbank/ddbj.rb +6 -18
  64. data/lib/bio/db/genbank/genbank.rb +47 -186
  65. data/lib/bio/db/genbank/genpept.rb +4 -17
  66. data/lib/bio/db/genbank/refseq.rb +4 -17
  67. data/lib/bio/db/gff.rb +103 -35
  68. data/lib/bio/db/go.rb +4 -20
  69. data/lib/bio/db/kegg/brite.rb +26 -36
  70. data/lib/bio/db/kegg/compound.rb +81 -85
  71. data/lib/bio/db/kegg/drug.rb +98 -0
  72. data/lib/bio/db/kegg/enzyme.rb +133 -110
  73. data/lib/bio/db/kegg/expression.rb +2 -20
  74. data/lib/bio/db/kegg/genes.rb +208 -238
  75. data/lib/bio/db/kegg/genome.rb +164 -285
  76. data/lib/bio/db/kegg/glycan.rb +114 -157
  77. data/lib/bio/db/kegg/keggtab.rb +242 -303
  78. data/lib/bio/db/kegg/kgml.rb +117 -160
  79. data/lib/bio/db/kegg/orthology.rb +112 -0
  80. data/lib/bio/db/kegg/reaction.rb +54 -69
  81. data/lib/bio/db/kegg/taxonomy.rb +331 -0
  82. data/lib/bio/db/lasergene.rb +209 -0
  83. data/lib/bio/db/litdb.rb +3 -27
  84. data/lib/bio/db/medline.rb +228 -249
  85. data/lib/bio/db/nbrf.rb +3 -3
  86. data/lib/bio/db/newick.rb +510 -0
  87. data/lib/bio/db/nexus.rb +1854 -0
  88. data/lib/bio/db/pdb.rb +5 -17
  89. data/lib/bio/db/pdb/atom.rb +2 -18
  90. data/lib/bio/db/pdb/chain.rb +2 -18
  91. data/lib/bio/db/pdb/chemicalcomponent.rb +2 -18
  92. data/lib/bio/db/pdb/model.rb +2 -18
  93. data/lib/bio/db/pdb/pdb.rb +73 -34
  94. data/lib/bio/db/pdb/residue.rb +4 -20
  95. data/lib/bio/db/pdb/utils.rb +2 -18
  96. data/lib/bio/db/prosite.rb +403 -422
  97. data/lib/bio/db/rebase.rb +84 -40
  98. data/lib/bio/db/soft.rb +404 -0
  99. data/lib/bio/db/transfac.rb +5 -17
  100. data/lib/bio/feature.rb +106 -52
  101. data/lib/bio/io/das.rb +32 -42
  102. data/lib/bio/io/dbget.rb +2 -20
  103. data/lib/bio/io/ddbjxml.rb +77 -138
  104. data/lib/bio/io/ebisoap.rb +158 -0
  105. data/lib/bio/io/ensembl.rb +229 -0
  106. data/lib/bio/io/fastacmd.rb +89 -82
  107. data/lib/bio/io/fetch.rb +163 -96
  108. data/lib/bio/io/flatfile.rb +170 -73
  109. data/lib/bio/io/flatfile/bdb.rb +3 -16
  110. data/lib/bio/io/flatfile/index.rb +2 -2
  111. data/lib/bio/io/flatfile/indexer.rb +3 -2
  112. data/lib/bio/io/higet.rb +12 -31
  113. data/lib/bio/io/keggapi.rb +210 -269
  114. data/lib/bio/io/ncbisoap.rb +155 -0
  115. data/lib/bio/io/pubmed.rb +169 -147
  116. data/lib/bio/io/registry.rb +4 -20
  117. data/lib/bio/io/soapwsdl.rb +43 -38
  118. data/lib/bio/io/sql.rb +242 -305
  119. data/lib/bio/location.rb +407 -285
  120. data/lib/bio/map.rb +410 -0
  121. data/lib/bio/pathway.rb +558 -695
  122. data/lib/bio/reference.rb +272 -75
  123. data/lib/bio/sequence.rb +255 -13
  124. data/lib/bio/sequence/aa.rb +71 -10
  125. data/lib/bio/sequence/common.rb +187 -33
  126. data/lib/bio/sequence/compat.rb +59 -4
  127. data/lib/bio/sequence/format.rb +54 -7
  128. data/lib/bio/sequence/generic.rb +3 -3
  129. data/lib/bio/sequence/na.rb +328 -26
  130. data/lib/bio/shell.rb +11 -4
  131. data/lib/bio/shell/core.rb +221 -160
  132. data/lib/bio/shell/demo.rb +18 -15
  133. data/lib/bio/shell/interface.rb +14 -12
  134. data/lib/bio/shell/irb.rb +95 -0
  135. data/lib/bio/shell/object.rb +45 -26
  136. data/lib/bio/shell/plugin/blast.rb +42 -0
  137. data/lib/bio/shell/plugin/codon.rb +22 -14
  138. data/lib/bio/shell/plugin/das.rb +58 -0
  139. data/lib/bio/shell/plugin/emboss.rb +2 -2
  140. data/lib/bio/shell/plugin/entry.rb +22 -11
  141. data/lib/bio/shell/plugin/flatfile.rb +2 -2
  142. data/lib/bio/shell/plugin/keggapi.rb +13 -6
  143. data/lib/bio/shell/plugin/midi.rb +4 -4
  144. data/lib/bio/shell/plugin/obda.rb +2 -2
  145. data/lib/bio/shell/plugin/psort.rb +56 -0
  146. data/lib/bio/shell/plugin/seq.rb +35 -8
  147. data/lib/bio/shell/plugin/soap.rb +87 -0
  148. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/bioruby_generator.rb +29 -0
  149. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_classes.rhtml +4 -0
  150. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_log.rhtml +27 -0
  151. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_methods.rhtml +11 -0
  152. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_modules.rhtml +4 -0
  153. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_variables.rhtml +7 -0
  154. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-bg.gif +0 -0
  155. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-console.png +0 -0
  156. data/lib/bio/shell/rails/{public/images/icon.png → vendor/plugins/generators/bioruby/templates/bioruby-gem.png} +0 -0
  157. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-link.gif +0 -0
  158. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css +369 -0
  159. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.rhtml +47 -0
  160. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_controller.rb +144 -0
  161. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_helper.rb +47 -0
  162. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/commands.rhtml +8 -0
  163. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/history.rhtml +10 -0
  164. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml +22 -0
  165. data/lib/bio/shell/script.rb +25 -0
  166. data/lib/bio/shell/setup.rb +109 -0
  167. data/lib/bio/shell/web.rb +70 -58
  168. data/lib/bio/tree.rb +850 -0
  169. data/lib/bio/util/color_scheme.rb +84 -107
  170. data/lib/bio/util/color_scheme/buried.rb +5 -24
  171. data/lib/bio/util/color_scheme/helix.rb +5 -24
  172. data/lib/bio/util/color_scheme/hydropathy.rb +5 -24
  173. data/lib/bio/util/color_scheme/nucleotide.rb +5 -24
  174. data/lib/bio/util/color_scheme/strand.rb +5 -24
  175. data/lib/bio/util/color_scheme/taylor.rb +5 -24
  176. data/lib/bio/util/color_scheme/turn.rb +5 -24
  177. data/lib/bio/util/color_scheme/zappo.rb +5 -24
  178. data/lib/bio/util/contingency_table.rb +70 -43
  179. data/lib/bio/util/restriction_enzyme.rb +228 -0
  180. data/lib/bio/util/restriction_enzyme/analysis.rb +249 -0
  181. data/lib/bio/util/restriction_enzyme/analysis_basic.rb +217 -0
  182. data/lib/bio/util/restriction_enzyme/cut_symbol.rb +107 -0
  183. data/lib/bio/util/restriction_enzyme/double_stranded.rb +321 -0
  184. data/lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb +130 -0
  185. data/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb +103 -0
  186. data/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb +38 -0
  187. data/lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb +76 -0
  188. data/lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb +107 -0
  189. data/lib/bio/util/restriction_enzyme/enzymes.yaml +7061 -0
  190. data/lib/bio/util/restriction_enzyme/range/cut_range.rb +24 -0
  191. data/lib/bio/util/restriction_enzyme/range/cut_ranges.rb +47 -0
  192. data/lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb +67 -0
  193. data/lib/bio/util/restriction_enzyme/range/sequence_range.rb +257 -0
  194. data/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb +242 -0
  195. data/lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb +51 -0
  196. data/lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb +41 -0
  197. data/lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb +77 -0
  198. data/lib/bio/util/restriction_enzyme/single_strand.rb +199 -0
  199. data/lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb +135 -0
  200. data/lib/bio/util/restriction_enzyme/single_strand_complement.rb +23 -0
  201. data/lib/bio/util/restriction_enzyme/string_formatting.rb +111 -0
  202. data/lib/bio/util/sirna.rb +4 -22
  203. data/sample/color_scheme_na.rb +4 -12
  204. data/sample/enzymes.rb +78 -0
  205. data/sample/goslim.rb +5 -13
  206. data/sample/psortplot_html.rb +4 -12
  207. data/test/data/blast/2.2.15.blastp.m7 +876 -0
  208. data/test/data/embl/AB090716.embl.rel89 +63 -0
  209. data/test/data/fasta/example1.txt +75 -0
  210. data/test/data/fasta/example2.txt +21 -0
  211. data/test/data/iprscan/merged.raw +32 -0
  212. data/test/data/iprscan/merged.txt +74 -0
  213. data/test/data/soft/GDS100_partial.soft +92 -0
  214. data/test/data/soft/GSE3457_family_partial.soft +874 -0
  215. data/test/functional/bio/io/test_ensembl.rb +103 -0
  216. data/test/functional/bio/io/test_soapwsdl.rb +5 -17
  217. data/test/unit/bio/appl/bl2seq/test_report.rb +2 -2
  218. data/test/unit/bio/appl/blast/test_report.rb +3 -16
  219. data/test/unit/bio/appl/blast/test_xmlparser.rb +4 -16
  220. data/test/unit/bio/appl/genscan/test_report.rb +3 -16
  221. data/test/unit/bio/appl/hmmer/test_report.rb +3 -16
  222. data/test/unit/bio/appl/iprscan/test_report.rb +338 -0
  223. data/test/unit/bio/appl/mafft/test_report.rb +63 -0
  224. data/test/unit/bio/appl/sosui/test_report.rb +3 -16
  225. data/test/unit/bio/appl/targetp/test_report.rb +3 -16
  226. data/test/unit/bio/appl/test_blast.rb +3 -16
  227. data/test/unit/bio/appl/test_fasta.rb +4 -16
  228. data/test/unit/bio/appl/test_pts1.rb +140 -0
  229. data/test/unit/bio/appl/tmhmm/test_report.rb +3 -16
  230. data/test/unit/bio/data/test_aa.rb +4 -17
  231. data/test/unit/bio/data/test_codontable.rb +3 -16
  232. data/test/unit/bio/data/test_na.rb +3 -3
  233. data/test/unit/bio/db/embl/test_common.rb +3 -16
  234. data/test/unit/bio/db/embl/test_embl.rb +3 -16
  235. data/test/unit/bio/db/embl/test_embl_rel89.rb +219 -0
  236. data/test/unit/bio/db/embl/test_sptr.rb +1548 -41
  237. data/test/unit/bio/db/embl/test_uniprot.rb +3 -16
  238. data/test/unit/bio/db/kegg/test_genes.rb +3 -16
  239. data/test/unit/bio/db/pdb/test_pdb.rb +7 -24
  240. data/test/unit/bio/db/test_aaindex.rb +2 -2
  241. data/test/unit/bio/db/test_fasta.rb +3 -16
  242. data/test/unit/bio/db/test_gff.rb +3 -16
  243. data/test/unit/bio/db/test_lasergene.rb +95 -0
  244. data/test/unit/bio/db/test_newick.rb +56 -0
  245. data/test/unit/bio/db/test_nexus.rb +360 -0
  246. data/test/unit/bio/db/test_prosite.rb +5 -18
  247. data/test/unit/bio/db/test_rebase.rb +11 -25
  248. data/test/unit/bio/db/test_soft.rb +138 -0
  249. data/test/unit/bio/io/test_ddbjxml.rb +5 -17
  250. data/test/unit/bio/io/test_ensembl.rb +109 -0
  251. data/test/unit/bio/io/test_fastacmd.rb +3 -16
  252. data/test/unit/bio/io/test_flatfile.rb +237 -0
  253. data/test/unit/bio/io/test_soapwsdl.rb +4 -17
  254. data/test/unit/bio/sequence/test_aa.rb +3 -3
  255. data/test/unit/bio/sequence/test_common.rb +3 -16
  256. data/test/unit/bio/sequence/test_compat.rb +3 -16
  257. data/test/unit/bio/sequence/test_na.rb +29 -3
  258. data/test/unit/bio/shell/plugin/test_seq.rb +8 -8
  259. data/test/unit/bio/test_alignment.rb +16 -27
  260. data/test/unit/bio/test_command.rb +242 -25
  261. data/test/unit/bio/test_db.rb +3 -16
  262. data/test/unit/bio/test_feature.rb +4 -16
  263. data/test/unit/bio/test_location.rb +4 -16
  264. data/test/unit/bio/test_map.rb +230 -0
  265. data/test/unit/bio/test_pathway.rb +4 -16
  266. data/test/unit/bio/test_reference.rb +2 -2
  267. data/test/unit/bio/test_sequence.rb +7 -19
  268. data/test/unit/bio/test_shell.rb +3 -16
  269. data/test/unit/bio/test_tree.rb +593 -0
  270. data/test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb +299 -0
  271. data/test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb +103 -0
  272. data/test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb +240 -0
  273. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb +100 -0
  274. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb +75 -0
  275. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb +73 -0
  276. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb +53 -0
  277. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb +104 -0
  278. data/test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb +83 -0
  279. data/test/unit/bio/util/restriction_enzyme/test_analysis.rb +246 -0
  280. data/test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb +44 -0
  281. data/test/unit/bio/util/restriction_enzyme/test_double_stranded.rb +115 -0
  282. data/test/unit/bio/util/restriction_enzyme/test_single_strand.rb +147 -0
  283. data/test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb +147 -0
  284. data/test/unit/bio/util/restriction_enzyme/test_string_formatting.rb +60 -0
  285. data/test/unit/bio/util/test_color_scheme.rb +6 -18
  286. data/test/unit/bio/util/test_contingency_table.rb +6 -18
  287. data/test/unit/bio/util/test_restriction_enzyme.rb +42 -0
  288. data/test/unit/bio/util/test_sirna.rb +3 -16
  289. metadata +228 -169
  290. data/doc/BioRuby.rd.ja +0 -225
  291. data/doc/Design.rd.ja +0 -341
  292. data/doc/TODO.rd.ja +0 -138
  293. data/lib/bio/appl/fasta/format6.rb +0 -37
  294. data/lib/bio/db/kegg/cell.rb +0 -88
  295. data/lib/bio/db/kegg/ko.rb +0 -178
  296. data/lib/bio/shell/rails/Rakefile +0 -10
  297. data/lib/bio/shell/rails/app/controllers/application.rb +0 -4
  298. data/lib/bio/shell/rails/app/controllers/shell_controller.rb +0 -94
  299. data/lib/bio/shell/rails/app/helpers/application_helper.rb +0 -3
  300. data/lib/bio/shell/rails/app/models/shell_connection.rb +0 -30
  301. data/lib/bio/shell/rails/app/views/layouts/shell.rhtml +0 -37
  302. data/lib/bio/shell/rails/app/views/shell/history.rhtml +0 -5
  303. data/lib/bio/shell/rails/app/views/shell/index.rhtml +0 -2
  304. data/lib/bio/shell/rails/app/views/shell/show.rhtml +0 -13
  305. data/lib/bio/shell/rails/config/boot.rb +0 -19
  306. data/lib/bio/shell/rails/config/database.yml +0 -85
  307. data/lib/bio/shell/rails/config/environment.rb +0 -53
  308. data/lib/bio/shell/rails/config/environments/development.rb +0 -19
  309. data/lib/bio/shell/rails/config/environments/production.rb +0 -19
  310. data/lib/bio/shell/rails/config/environments/test.rb +0 -19
  311. data/lib/bio/shell/rails/config/routes.rb +0 -19
  312. data/lib/bio/shell/rails/doc/README_FOR_APP +0 -2
  313. data/lib/bio/shell/rails/public/404.html +0 -8
  314. data/lib/bio/shell/rails/public/500.html +0 -8
  315. data/lib/bio/shell/rails/public/dispatch.cgi +0 -10
  316. data/lib/bio/shell/rails/public/dispatch.fcgi +0 -24
  317. data/lib/bio/shell/rails/public/dispatch.rb +0 -10
  318. data/lib/bio/shell/rails/public/favicon.ico +0 -0
  319. data/lib/bio/shell/rails/public/images/rails.png +0 -0
  320. data/lib/bio/shell/rails/public/index.html +0 -277
  321. data/lib/bio/shell/rails/public/javascripts/controls.js +0 -750
  322. data/lib/bio/shell/rails/public/javascripts/dragdrop.js +0 -584
  323. data/lib/bio/shell/rails/public/javascripts/effects.js +0 -854
  324. data/lib/bio/shell/rails/public/javascripts/prototype.js +0 -1785
  325. data/lib/bio/shell/rails/public/robots.txt +0 -1
  326. data/lib/bio/shell/rails/public/stylesheets/main.css +0 -187
  327. data/lib/bio/shell/rails/script/about +0 -3
  328. data/lib/bio/shell/rails/script/breakpointer +0 -3
  329. data/lib/bio/shell/rails/script/console +0 -3
  330. data/lib/bio/shell/rails/script/destroy +0 -3
  331. data/lib/bio/shell/rails/script/generate +0 -3
  332. data/lib/bio/shell/rails/script/performance/benchmarker +0 -3
  333. data/lib/bio/shell/rails/script/performance/profiler +0 -3
  334. data/lib/bio/shell/rails/script/plugin +0 -3
  335. data/lib/bio/shell/rails/script/process/reaper +0 -3
  336. data/lib/bio/shell/rails/script/process/spawner +0 -3
  337. data/lib/bio/shell/rails/script/process/spinner +0 -3
  338. data/lib/bio/shell/rails/script/runner +0 -3
  339. data/lib/bio/shell/rails/script/server +0 -42
  340. data/lib/bio/shell/rails/test/test_helper.rb +0 -28
@@ -0,0 +1,23 @@
1
+ #
2
+ # bio/util/restriction_enzyme/single_strand_complement.rb - Single strand restriction enzyme sequence in complement orientation
3
+ #
4
+ # Author:: Trevor Wennblom <mailto:trevor@corevx.com>
5
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
6
+ # License:: The Ruby License
7
+ #
8
+ # $Id: single_strand_complement.rb,v 1.5 2007/07/16 19:28:48 k Exp $
9
+ #
10
+
11
+ require 'bio/util/restriction_enzyme'
12
+
13
+ module Bio
14
+ class RestrictionEnzyme
15
+
16
+ # A single strand of restriction enzyme sequence pattern with a 3' to 5' orientation.
17
+ #
18
+ class SingleStrandComplement < SingleStrand
19
+ # Orientation of the strand, 3' to 5'
20
+ def orientation; [3, 5]; end
21
+ end # SingleStrandComplement
22
+ end # RestrictionEnzyme
23
+ end # Bio
@@ -0,0 +1,111 @@
1
+ #
2
+ # bio/util/restriction_enzyme/string_formatting.rb - Useful functions for string manipulation
3
+ #
4
+ # Author:: Trevor Wennblom <mailto:trevor@corevx.com>
5
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
6
+ # License:: The Ruby License
7
+ #
8
+ # $Id: string_formatting.rb,v 1.6 2007/07/16 19:28:48 k Exp $
9
+ #
10
+
11
+ require 'bio/util/restriction_enzyme'
12
+
13
+ module Bio
14
+ class RestrictionEnzyme
15
+
16
+ module StringFormatting
17
+ include CutSymbol
18
+ extend CutSymbol
19
+
20
+ # Return the sequence with spacing for alignment. Does not add whitespace
21
+ # around cut symbols.
22
+ #
23
+ # Example:
24
+ # pattern = 'n^ng^arraxt^n'
25
+ # add_spacing( pattern ) # => "n^n g^a r r a x t^n"
26
+ #
27
+ # ---
28
+ # *Arguments*
29
+ # * +seq+: sequence with cut symbols
30
+ # * +cs+: (_optional_) Cut symbol along the string. The reason this is
31
+ # definable outside of CutSymbol is that this is a utility function used
32
+ # to form vertical and horizontal cuts such as:
33
+ #
34
+ # a|t g c
35
+ # +---+
36
+ # t a c|g
37
+ # *Returns*:: +String+ sequence with single character distance between bases
38
+ def add_spacing( seq, cs = cut_symbol )
39
+ str = ''
40
+ flag = false
41
+ seq.each_byte do |c|
42
+ c = c.chr
43
+ if c == cs
44
+ str += c
45
+ flag = false
46
+ elsif flag
47
+ str += ' ' + c
48
+ else
49
+ str += c
50
+ flag = true
51
+ end
52
+ end
53
+ str
54
+ end
55
+
56
+ # Remove extraneous nucleic acid wildcards ('n' padding) from the
57
+ # left and right sides
58
+ #
59
+ # ---
60
+ # *Arguments*
61
+ # * +s+: sequence with extraneous 'n' padding
62
+ # *Returns*:: +String+ sequence without 'n' padding on the sides
63
+ def strip_padding( s )
64
+ if s[0].chr == 'n'
65
+ s =~ %r{(n+)(.+)}
66
+ s = $2
67
+ end
68
+ if s[-1].chr == 'n'
69
+ s =~ %r{(.+?)(n+)$}
70
+ s = $1
71
+ end
72
+ s
73
+ end
74
+
75
+ # Remove extraneous nucleic acid wildcards ('n' padding) from the
76
+ # left and right sides and remove cut symbols
77
+ #
78
+ # ---
79
+ # *Arguments*
80
+ # * +s+: sequence with extraneous 'n' padding and cut symbols
81
+ # *Returns*:: +String+ sequence without 'n' padding on the sides or cut symbols
82
+ def strip_cuts_and_padding( s )
83
+ strip_padding( s.tr(cut_symbol, '') )
84
+ end
85
+
86
+ # Return the 'n' padding on the left side of the strand
87
+ #
88
+ # ---
89
+ # *Arguments*
90
+ # * +s+: sequence with extraneous 'n' padding on the left side of the strand
91
+ # *Returns*:: +String+ the 'n' padding from the left side
92
+ def left_padding( s )
93
+ s =~ %r{^n+}
94
+ ret = $&
95
+ ret ? ret : '' # Don't pass nil values
96
+ end
97
+
98
+ # Return the 'n' padding on the right side of the strand
99
+ #
100
+ # ---
101
+ # *Arguments*
102
+ # * +s+: sequence with extraneous 'n' padding on the right side of the strand
103
+ # *Returns*:: +String+ the 'n' padding from the right side
104
+ def right_padding( s )
105
+ s =~ %r{n+$}
106
+ ret = $&
107
+ ret ? ret : '' # Don't pass nil values
108
+ end
109
+ end # StringFormatting
110
+ end # RestrictionEnzyme
111
+ end # Bio
@@ -3,9 +3,9 @@
3
3
  #
4
4
  # Copyright:: Copyright (C) 2004, 2005
5
5
  # Itoshi NIKAIDO <dritoshi@gmail.com>
6
- # License:: LGPL
6
+ # License:: The Ruby License
7
7
  #
8
- # $Id: sirna.rb,v 1.7 2005/12/27 17:27:38 k Exp $
8
+ # $Id: sirna.rb,v 1.11 2007/04/05 23:35:41 trevor Exp $
9
9
  #
10
10
  # == Bio::SiRNA - Designing siRNA.
11
11
  #
@@ -38,24 +38,6 @@
38
38
  # * Angela Reynolds et al. Rational siRNA design for RNA interference.
39
39
  # Nature Biotech. 2004 22: 326-330.
40
40
  #
41
- #--
42
- #
43
- # This library is free software; you can redistribute it and/or
44
- # modify it under the terms of the GNU Lesser General Public
45
- # License as published by the Free Software Foundation; either
46
- # version 2 of the License, or (at your option) any later version.
47
- #
48
- # This library is distributed in the hope that it will be useful,
49
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
50
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
51
- # Lesser General Public License for more details.
52
- #
53
- # You should have received a copy of the GNU Lesser General Public
54
- # License along with this library; if not, write to the Free Software
55
- # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
56
- #
57
- #++
58
- #
59
41
 
60
42
  require 'bio/sequence'
61
43
 
@@ -96,8 +78,8 @@ module Bio
96
78
  one_third = target.size * 1 / 3
97
79
  start_pos = @target_size - one_third - 1
98
80
  remain_seq = target.subseq(start_pos, @target_size - 2)
99
- gc_number = remain_seq.scan(/[AU]/i).size
100
- return false if gc_number < 5
81
+ au_number = remain_seq.scan(/[AU]/i).size
82
+ return false if au_number < 5
101
83
 
102
84
  return true
103
85
  end
@@ -13,19 +13,11 @@
13
13
  # % ruby color_scheme_na.rb seq.fna > colored-seq-fna.html
14
14
  #
15
15
  #
16
- # Copyright (C) 2005 Mitsuteru C. Nakao <n@bioruby.org>
16
+ # Copyright:: Copyright (C) 2005
17
+ # Mitsuteru C. Nakao <n@bioruby.org>
18
+ # License:: The Ruby License
17
19
  #
18
- # This program is free software; you can redistribute it and/or modify
19
- # it under the terms of the GNU General Public License as published by
20
- # the Free Software Foundation; either version 2 of the License, or
21
- # (at your option) any later version.
22
- #
23
- # This program is distributed in the hope that it will be useful,
24
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
25
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
26
- # GNU General Public License for more details.
27
- #
28
- # $Id: color_scheme_na.rb,v 1.1 2005/10/31 07:39:13 nakao Exp $
20
+ # $Id: color_scheme_na.rb,v 1.3 2007/04/05 23:35:42 trevor Exp $
29
21
  #
30
22
 
31
23
  require 'bio'
@@ -0,0 +1,78 @@
1
+ #!/usr/bin/env ruby
2
+ #
3
+ # enzymes.rb - cut input file using enzyme on command line
4
+ #
5
+ # Copyright (C) 2006 Pjotr Prins <p@bioruby.org> and Trevor Wennblom <trevor@corevx.com>
6
+ #
7
+ # This program is free software; you can redistribute it and/or modify
8
+ # it under the terms of the GNU General Public License as published by
9
+ # the Free Software Foundation; either version 2 of the License, or
10
+ # (at your option) any later version.
11
+ #
12
+ # This program is distributed in the hope that it will be useful,
13
+ # but WITHOUT ANY WARRANTY; without even the implied warranty of
14
+ # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15
+ # GNU General Public License for more details.
16
+ #
17
+ # $Id: enzymes.rb,v 1.1 2006/03/03 15:31:06 pjotr Exp $
18
+ #
19
+
20
+ require 'bio/io/flatfile'
21
+ require 'bio/util/restriction_enzyme'
22
+
23
+ include Bio
24
+
25
+ usage = <<USAGE
26
+
27
+ Usage: enzymes.rb enzyme1 [enzyme2] infiles
28
+
29
+ Examples:
30
+
31
+ Output the primary sequences cut using both BstYI and MseI:
32
+
33
+ ./enzymes.rb BstYI MseI *.seq
34
+
35
+ or using the actual formats
36
+
37
+ ./enzymes.rb "r^gatcy" "t^taa" *.seq
38
+
39
+ USAGE
40
+
41
+ if ARGV.size < 2
42
+ print usage
43
+ exit 1
44
+ end
45
+
46
+ enzyme1 = ARGV.shift
47
+ # ---- Fetch enzyme2 if it is not a file
48
+ arg2 = ARGV[0]
49
+ if arg2 and !File.exist?(arg2)
50
+ enzyme2 = ARGV.shift
51
+ end
52
+
53
+ re1 = Bio::RestrictionEnzyme::DoubleStranded.new(enzyme1)
54
+ puts "Enzyme #{enzyme1}: " + re1.primary.with_cut_symbols # e.g. r^gatcy
55
+ if (enzyme2)
56
+ re2 = Bio::RestrictionEnzyme::DoubleStranded.new(enzyme2)
57
+ puts "Enzyme #{enzyme2}: " + re2.primary.with_cut_symbols # e.g. t^taa
58
+ end
59
+
60
+ ARGV.each do | fn |
61
+ ff = Bio::FlatFile.auto(fn)
62
+ ff.each_entry do |entry|
63
+ seq = Bio::Sequence::NA.new(entry.seq)
64
+ # puts seq.inspect
65
+ seq.cut_with_enzyme(enzyme1).each do | frag1 |
66
+ frag = frag1
67
+ if enzyme2
68
+ seq = Bio::Sequence::NA.new(frag1.primary)
69
+ frags2 = seq.cut_with_enzyme(enzyme2)
70
+ next if frags2.size == 0
71
+ frag = frags2.shift # pick up first fragment
72
+ end
73
+ print '> '+entry.definition+"\n"
74
+ print frag.primary,"\n"
75
+ end
76
+ end
77
+ end
78
+
@@ -10,24 +10,16 @@
10
10
  # % R < mgi.R
11
11
  # % gv mgi.pdf
12
12
  #
13
- # Copyright (C) 2003 Mitsuteru C. Nakao <n@bioruby.org>
13
+ # Copyright:: Copyright (C) 2003
14
+ # Mitsuteru C. Nakao <n@bioruby.org>
15
+ # License:: The Ruby License
14
16
  #
15
- # This program is free software; you can redistribute it and/or modify
16
- # it under the terms of the GNU General Public License as published by
17
- # the Free Software Foundation; either version 2 of the License, or
18
- # (at your option) any later version.
19
- #
20
- # This program is distributed in the hope that it will be useful,
21
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
22
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
23
- # GNU General Public License for more details.
24
- #
25
- # $Id: goslim.rb,v 1.3 2003/05/13 10:45:42 n Exp $
17
+ # $Id: goslim.rb,v 1.5 2007/04/05 23:35:42 trevor Exp $
26
18
  #
27
19
 
28
20
 
29
21
 
30
- SCRIPT_VERSION = '$Id: goslim.rb,v 1.3 2003/05/13 10:45:42 n Exp $'
22
+ SCRIPT_VERSION = '$Id: goslim.rb,v 1.5 2007/04/05 23:35:42 trevor Exp $'
31
23
 
32
24
  USAGE = "${__FILE__} - GO slim
33
25
  Usage:
@@ -11,19 +11,11 @@
11
11
  # % ruby psortplot_html.rb path:eco00010
12
12
  # % cat eco00010_psort2.html
13
13
  #
14
- # Copyright (C) 2005 Mitsuteru C. Nakao <n@bioruby.org>
14
+ # Copyright:: Copyright (C) 2005
15
+ # Mitsuteru C. Nakao <n@bioruby.org>
16
+ # License:: The Ruby License
15
17
  #
16
- # This program is free software; you can redistribute it and/or modify
17
- # it under the terms of the GNU General Public License as published by
18
- # the Free Software Foundation; either version 2 of the License, or
19
- # (at your option) any later version.
20
- #
21
- # This program is distributed in the hope that it will be useful,
22
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
23
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
24
- # GNU General Public License for more details.
25
- #
26
- # $Id: psortplot_html.rb,v 1.1 2005/10/12 02:10:11 nakao Exp $
18
+ # $Id: psortplot_html.rb,v 1.3 2007/04/05 23:35:42 trevor Exp $
27
19
  #
28
20
 
29
21
  require 'bio'
@@ -0,0 +1,876 @@
1
+ <?xml version="1.0"?>
2
+ <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3
+ <BlastOutput>
4
+ <BlastOutput_program>blastp</BlastOutput_program>
5
+ <BlastOutput_version>blastp 2.2.15 [Oct-15-2006]</BlastOutput_version>
6
+ <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~&quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7
+ <BlastOutput_db>p53_barbu.fasta</BlastOutput_db>
8
+ <BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID>
9
+ <BlastOutput_query-def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</BlastOutput_query-def>
10
+ <BlastOutput_query-len>393</BlastOutput_query-len>
11
+ <BlastOutput_param>
12
+ <Parameters>
13
+ <Parameters_matrix>BLOSUM62</Parameters_matrix>
14
+ <Parameters_expect>10</Parameters_expect>
15
+ <Parameters_gap-open>11</Parameters_gap-open>
16
+ <Parameters_gap-extend>1</Parameters_gap-extend>
17
+ <Parameters_filter>F</Parameters_filter>
18
+ </Parameters>
19
+ </BlastOutput_param>
20
+ <BlastOutput_iterations>
21
+ <Iteration>
22
+ <Iteration_iter-num>1</Iteration_iter-num>
23
+ <Iteration_query-ID>lcl|1_0</Iteration_query-ID>
24
+ <Iteration_query-def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</Iteration_query-def>
25
+ <Iteration_query-len>393</Iteration_query-len>
26
+ <Iteration_hits>
27
+ <Hit>
28
+ <Hit_num>1</Hit_num>
29
+ <Hit_id>gnl|BL_ORD_ID|13</Hit_id>
30
+ <Hit_def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</Hit_def>
31
+ <Hit_accession>13</Hit_accession>
32
+ <Hit_len>393</Hit_len>
33
+ <Hit_hsps>
34
+ <Hsp>
35
+ <Hsp_num>1</Hsp_num>
36
+ <Hsp_bit-score>755.362</Hsp_bit-score>
37
+ <Hsp_score>1949</Hsp_score>
38
+ <Hsp_evalue>0</Hsp_evalue>
39
+ <Hsp_query-from>1</Hsp_query-from>
40
+ <Hsp_query-to>393</Hsp_query-to>
41
+ <Hsp_hit-from>1</Hsp_hit-from>
42
+ <Hsp_hit-to>393</Hsp_hit-to>
43
+ <Hsp_query-frame>1</Hsp_query-frame>
44
+ <Hsp_hit-frame>1</Hsp_hit-frame>
45
+ <Hsp_identity>366</Hsp_identity>
46
+ <Hsp_positive>366</Hsp_positive>
47
+ <Hsp_align-len>393</Hsp_align-len>
48
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
49
+ <Hsp_hseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_hseq>
50
+ <Hsp_midline>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDE SWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_midline>
51
+ </Hsp>
52
+ </Hit_hsps>
53
+ </Hit>
54
+ <Hit>
55
+ <Hit_num>2</Hit_num>
56
+ <Hit_id>gnl|BL_ORD_ID|6</Hit_id>
57
+ <Hit_def>P53_CERAE P13481 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
58
+ <Hit_accession>6</Hit_accession>
59
+ <Hit_len>393</Hit_len>
60
+ <Hit_hsps>
61
+ <Hsp>
62
+ <Hsp_num>1</Hsp_num>
63
+ <Hsp_bit-score>730.324</Hsp_bit-score>
64
+ <Hsp_score>1884</Hsp_score>
65
+ <Hsp_evalue>0</Hsp_evalue>
66
+ <Hsp_query-from>1</Hsp_query-from>
67
+ <Hsp_query-to>393</Hsp_query-to>
68
+ <Hsp_hit-from>1</Hsp_hit-from>
69
+ <Hsp_hit-to>393</Hsp_hit-to>
70
+ <Hsp_query-frame>1</Hsp_query-frame>
71
+ <Hsp_hit-frame>1</Hsp_hit-frame>
72
+ <Hsp_identity>353</Hsp_identity>
73
+ <Hsp_positive>357</Hsp_positive>
74
+ <Hsp_align-len>393</Hsp_align-len>
75
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
76
+ <Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPHMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
77
+ <Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP HELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
78
+ </Hsp>
79
+ </Hit_hsps>
80
+ </Hit>
81
+ <Hit>
82
+ <Hit_num>3</Hit_num>
83
+ <Hit_id>gnl|BL_ORD_ID|17</Hit_id>
84
+ <Hit_def>P53_MACMU P56424 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
85
+ <Hit_accession>17</Hit_accession>
86
+ <Hit_len>393</Hit_len>
87
+ <Hit_hsps>
88
+ <Hsp>
89
+ <Hsp_num>1</Hsp_num>
90
+ <Hsp_bit-score>729.169</Hsp_bit-score>
91
+ <Hsp_score>1881</Hsp_score>
92
+ <Hsp_evalue>0</Hsp_evalue>
93
+ <Hsp_query-from>1</Hsp_query-from>
94
+ <Hsp_query-to>393</Hsp_query-to>
95
+ <Hsp_hit-from>1</Hsp_hit-from>
96
+ <Hsp_hit-to>393</Hsp_hit-to>
97
+ <Hsp_query-frame>1</Hsp_query-frame>
98
+ <Hsp_hit-frame>1</Hsp_hit-frame>
99
+ <Hsp_identity>352</Hsp_identity>
100
+ <Hsp_positive>357</Hsp_positive>
101
+ <Hsp_align-len>393</Hsp_align-len>
102
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
103
+ <Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
104
+ <Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
105
+ </Hsp>
106
+ </Hit_hsps>
107
+ </Hit>
108
+ <Hit>
109
+ <Hit_num>4</Hit_num>
110
+ <Hit_id>gnl|BL_ORD_ID|16</Hit_id>
111
+ <Hit_def>P53_MACFU P61260 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
112
+ <Hit_accession>16</Hit_accession>
113
+ <Hit_len>393</Hit_len>
114
+ <Hit_hsps>
115
+ <Hsp>
116
+ <Hsp_num>1</Hsp_num>
117
+ <Hsp_bit-score>729.169</Hsp_bit-score>
118
+ <Hsp_score>1881</Hsp_score>
119
+ <Hsp_evalue>0</Hsp_evalue>
120
+ <Hsp_query-from>1</Hsp_query-from>
121
+ <Hsp_query-to>393</Hsp_query-to>
122
+ <Hsp_hit-from>1</Hsp_hit-from>
123
+ <Hsp_hit-to>393</Hsp_hit-to>
124
+ <Hsp_query-frame>1</Hsp_query-frame>
125
+ <Hsp_hit-frame>1</Hsp_hit-frame>
126
+ <Hsp_identity>352</Hsp_identity>
127
+ <Hsp_positive>357</Hsp_positive>
128
+ <Hsp_align-len>393</Hsp_align-len>
129
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
130
+ <Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
131
+ <Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
132
+ </Hsp>
133
+ </Hit_hsps>
134
+ </Hit>
135
+ <Hit>
136
+ <Hit_num>5</Hit_num>
137
+ <Hit_id>gnl|BL_ORD_ID|15</Hit_id>
138
+ <Hit_def>P53_MACFA P56423 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
139
+ <Hit_accession>15</Hit_accession>
140
+ <Hit_len>393</Hit_len>
141
+ <Hit_hsps>
142
+ <Hsp>
143
+ <Hsp_num>1</Hsp_num>
144
+ <Hsp_bit-score>729.169</Hsp_bit-score>
145
+ <Hsp_score>1881</Hsp_score>
146
+ <Hsp_evalue>0</Hsp_evalue>
147
+ <Hsp_query-from>1</Hsp_query-from>
148
+ <Hsp_query-to>393</Hsp_query-to>
149
+ <Hsp_hit-from>1</Hsp_hit-from>
150
+ <Hsp_hit-to>393</Hsp_hit-to>
151
+ <Hsp_query-frame>1</Hsp_query-frame>
152
+ <Hsp_hit-frame>1</Hsp_hit-frame>
153
+ <Hsp_identity>352</Hsp_identity>
154
+ <Hsp_positive>357</Hsp_positive>
155
+ <Hsp_align-len>393</Hsp_align-len>
156
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
157
+ <Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
158
+ <Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
159
+ </Hsp>
160
+ </Hit_hsps>
161
+ </Hit>
162
+ <Hit>
163
+ <Hit_num>6</Hit_num>
164
+ <Hit_id>gnl|BL_ORD_ID|18</Hit_id>
165
+ <Hit_def>P53_MARMO O36006 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
166
+ <Hit_accession>18</Hit_accession>
167
+ <Hit_len>391</Hit_len>
168
+ <Hit_hsps>
169
+ <Hsp>
170
+ <Hsp_num>1</Hsp_num>
171
+ <Hsp_bit-score>659.448</Hsp_bit-score>
172
+ <Hsp_score>1700</Hsp_score>
173
+ <Hsp_evalue>0</Hsp_evalue>
174
+ <Hsp_query-from>1</Hsp_query-from>
175
+ <Hsp_query-to>393</Hsp_query-to>
176
+ <Hsp_hit-from>1</Hsp_hit-from>
177
+ <Hsp_hit-to>391</Hsp_hit-to>
178
+ <Hsp_query-frame>1</Hsp_query-frame>
179
+ <Hsp_hit-frame>1</Hsp_hit-frame>
180
+ <Hsp_identity>323</Hsp_identity>
181
+ <Hsp_positive>338</Hsp_positive>
182
+ <Hsp_gaps>2</Hsp_gaps>
183
+ <Hsp_align-len>393</Hsp_align-len>
184
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
185
+ <Hsp_hseq>MEEAQSDLSIEPPLSQETFSDLWNLLPENNVLSPVLSPPMDDLLLSSEDVENWF--DKGPDEALQMSAAPAPKAPTPAASTLAAPSPATSWPLSSSVPSQNTYPGVYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSECTTIHYNYMCNSSCMGGMNRRPILTIITLEGSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKRGEPCPEPPPRSTKRALPNGTSSSPQPKKKPLDGEYFTLKIRGRARFEMFQELNEALELKDAQAEKEPGESRPHPSYLKSKKGQSTSRHKKIIFKREGPDSD</Hsp_hseq>
186
+ <Hsp_midline>MEE QSD S+EPPLSQETFSDLW LLPENNVLSP+ S MDDL+LS +D+E WF D GPDE SWPLSSSVPSQ TY G YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGS+CTTIHYNYMCNSSCMGGMNRRPILTIITLE SSGNLLGRNSFEVRVCACPGRDRRTEEEN RK+GEP E PP STKRALPN TSSSPQPKKKPLDGEYFTL+IRGR RFEMF+ELNEALELKDAQA KEPG SR H S+LKSKKGQSTSRHKK++FK EGPDSD</Hsp_midline>
187
+ </Hsp>
188
+ </Hit_hsps>
189
+ </Hit>
190
+ <Hit>
191
+ <Hit_num>7</Hit_num>
192
+ <Hit_id>gnl|BL_ORD_ID|25</Hit_id>
193
+ <Hit_def>P53_RABIT Q95330 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
194
+ <Hit_accession>25</Hit_accession>
195
+ <Hit_len>391</Hit_len>
196
+ <Hit_hsps>
197
+ <Hsp>
198
+ <Hsp_num>1</Hsp_num>
199
+ <Hsp_bit-score>648.277</Hsp_bit-score>
200
+ <Hsp_score>1671</Hsp_score>
201
+ <Hsp_evalue>0</Hsp_evalue>
202
+ <Hsp_query-from>1</Hsp_query-from>
203
+ <Hsp_query-to>393</Hsp_query-to>
204
+ <Hsp_hit-from>1</Hsp_hit-from>
205
+ <Hsp_hit-to>391</Hsp_hit-to>
206
+ <Hsp_query-frame>1</Hsp_query-frame>
207
+ <Hsp_hit-frame>1</Hsp_hit-frame>
208
+ <Hsp_identity>322</Hsp_identity>
209
+ <Hsp_positive>338</Hsp_positive>
210
+ <Hsp_gaps>4</Hsp_gaps>
211
+ <Hsp_align-len>394</Hsp_align-len>
212
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTS-SSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
213
+ <Hsp_hseq>MEESQSDLSLEPPLSQETFSDLWKLLPENNLLTTSLNPPVDDL-LSAEDVANWLNEDP--EEGLRVPAAPAPEAPAPAAPALAAPAPATSWPLSSSVPSQKTYHGNYGFRLGFLHSGTAKSVTCTYSPCLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPELPPGSSKRALPTTTTDSSPQTKKKPLDGEYFILKIRGRERFEMFRELNEALELKDAQAEKEPGGSRAHSSYLKAKKGQSTSRHKKPMFKREGPDSD</Hsp_hseq>
214
+ <Hsp_midline>MEE QSD S+EPPLSQETFSDLWKLLPENN+L+ + +DDL LS +D+ W EDP +E SWPLSSSVPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP ELPPGS+KRALP T+ SSPQ KKKPLDGEYF L+IRGRERFEMFRELNEALELKDAQA KEPGGSRAHSS+LK+KKGQSTSRHKK MFK EGPDSD</Hsp_midline>
215
+ </Hsp>
216
+ </Hit_hsps>
217
+ </Hit>
218
+ <Hit>
219
+ <Hit_num>8</Hit_num>
220
+ <Hit_id>gnl|BL_ORD_ID|9</Hit_id>
221
+ <Hit_def>P53_DELLE Q8SPZ3 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
222
+ <Hit_accession>9</Hit_accession>
223
+ <Hit_len>387</Hit_len>
224
+ <Hit_hsps>
225
+ <Hsp>
226
+ <Hsp_num>1</Hsp_num>
227
+ <Hsp_bit-score>635.95</Hsp_bit-score>
228
+ <Hsp_score>1639</Hsp_score>
229
+ <Hsp_evalue>0</Hsp_evalue>
230
+ <Hsp_query-from>1</Hsp_query-from>
231
+ <Hsp_query-to>393</Hsp_query-to>
232
+ <Hsp_hit-from>1</Hsp_hit-from>
233
+ <Hsp_hit-to>387</Hsp_hit-to>
234
+ <Hsp_query-frame>1</Hsp_query-frame>
235
+ <Hsp_hit-frame>1</Hsp_hit-frame>
236
+ <Hsp_identity>318</Hsp_identity>
237
+ <Hsp_positive>332</Hsp_positive>
238
+ <Hsp_gaps>8</Hsp_gaps>
239
+ <Hsp_align-len>394</Hsp_align-len>
240
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
241
+ <Hsp_hseq>MEESQAELGVEPPLSQETFSDLWKLLPENNLLSSELSPAVDDLLLSPEDVANWL--DERPDEAPQMPEPPAPAAPTPAAPAPAT-----SWPLSSFVPSQKTYPGSYGFHLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERCSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSNGNLLGRNSFEVRVCACPGRDRRTEEENFHKKGQSCPELPTGSAKRALPTGTSSSPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGESRAHSSHLKSKKGQSPSRHKKLMFKREGPDSD</Hsp_hseq>
242
+ <Hsp_midline>MEE Q++ VEPPLSQETFSDLWKLLPENN+LS S A+DDL+LSP+D+ W D PDE SWPLSS VPSQKTY GSYGF LGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHERCSD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDS+GNLLGRNSFEVRVCACPGRDRRTEEEN KKG+ ELP GS KRALP TSSSP KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG SRAHSSHLKSKKGQS SRHKKLMFK EGPDSD</Hsp_midline>
243
+ </Hsp>
244
+ </Hit_hsps>
245
+ </Hit>
246
+ <Hit>
247
+ <Hit_num>9</Hit_num>
248
+ <Hit_id>gnl|BL_ORD_ID|23</Hit_id>
249
+ <Hit_def>P53_PIG Q9TUB2 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
250
+ <Hit_accession>23</Hit_accession>
251
+ <Hit_len>386</Hit_len>
252
+ <Hit_hsps>
253
+ <Hsp>
254
+ <Hsp_num>1</Hsp_num>
255
+ <Hsp_bit-score>607.446</Hsp_bit-score>
256
+ <Hsp_score>1565</Hsp_score>
257
+ <Hsp_evalue>4.50259e-177</Hsp_evalue>
258
+ <Hsp_query-from>1</Hsp_query-from>
259
+ <Hsp_query-to>393</Hsp_query-to>
260
+ <Hsp_hit-from>1</Hsp_hit-from>
261
+ <Hsp_hit-to>386</Hsp_hit-to>
262
+ <Hsp_query-frame>1</Hsp_query-frame>
263
+ <Hsp_hit-frame>1</Hsp_hit-frame>
264
+ <Hsp_identity>308</Hsp_identity>
265
+ <Hsp_positive>326</Hsp_positive>
266
+ <Hsp_gaps>11</Hsp_gaps>
267
+ <Hsp_align-len>395</Hsp_align-len>
268
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSP-LPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
269
+ <Hsp_hseq>MEESQSELGVEPPLSQETFSDLWKLLPENNLLSSELSLAAVNDLLLSP--VTNWLDENPDDASRVPAPPAATAPAPAAPAPAT-------SWPLSSFVPSQKTYPGSYDFRLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDASGNLLGRNSFEVRVCACPGRDRRTEEENFLKKGQSCPEPPPGSTKRALPTSTSSSPVQKKKPLDGEYFTLQIRGRERFEMFRELNDALELKDAQTARESGENRAHSSHLKSKKGQSPSRHKKPMFKREGPDSD</Hsp_hseq>
270
+ <Hsp_midline>MEE QS+ VEPPLSQETFSDLWKLLPENN+LS L A++DL+LSP + W E+P SWPLSS VPSQKTY GSY FRLGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLED+SGNLLGRNSFEVRVCACPGRDRRTEEEN KKG+ E PPGSTKRALP +TSSSP KKKPLDGEYFTLQIRGRERFEMFRELN+ALELKDAQ +E G +RAHSSHLKSKKGQS SRHKK MFK EGPDSD</Hsp_midline>
271
+ </Hsp>
272
+ </Hit_hsps>
273
+ </Hit>
274
+ <Hit>
275
+ <Hit_num>10</Hit_num>
276
+ <Hit_id>gnl|BL_ORD_ID|4</Hit_id>
277
+ <Hit_def>P53_CANFA Q29537 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
278
+ <Hit_accession>4</Hit_accession>
279
+ <Hit_len>381</Hit_len>
280
+ <Hit_hsps>
281
+ <Hsp>
282
+ <Hsp_num>1</Hsp_num>
283
+ <Hsp_bit-score>604.749</Hsp_bit-score>
284
+ <Hsp_score>1558</Hsp_score>
285
+ <Hsp_evalue>2.91849e-176</Hsp_evalue>
286
+ <Hsp_query-from>1</Hsp_query-from>
287
+ <Hsp_query-to>393</Hsp_query-to>
288
+ <Hsp_hit-from>1</Hsp_hit-from>
289
+ <Hsp_hit-to>381</Hsp_hit-to>
290
+ <Hsp_query-frame>1</Hsp_query-frame>
291
+ <Hsp_hit-frame>1</Hsp_hit-frame>
292
+ <Hsp_identity>304</Hsp_identity>
293
+ <Hsp_positive>325</Hsp_positive>
294
+ <Hsp_gaps>14</Hsp_gaps>
295
+ <Hsp_align-len>394</Hsp_align-len>
296
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
297
+ <Hsp_hseq>MEESQSELNIDPPLSQETFSELWNLLPENNVLSSELCPAVDELLL-PESVVNWLDEDSDD------------APRMPATSAPTAPGPAPSWPLSSSVPSPKTYPGTYGFRLGFLHSGTAKSVTWTYSPLLNKLFCQLAKTCPVQLWVSSPPPPNTCVRAMAIYKKSEFVTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAKYLDDRNTFRHSVVVPYEPPEVGSDYTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNVLGRNSFEVRVCACPGRDRRTEEENFHKKGEPCPEPPPGSTKRALPPSTSSSPPQKKKPLDGEYFTLQIRGRERYEMFRNLNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKLMFKREGLDSD</Hsp_hseq>
298
+ <Hsp_midline>MEE QS+ +++PPLSQETFS+LW LLPENNVLS A+D+L+L P+ + W ED SWPLSSSVPS KTY G+YGFRLGFLHSGTAKSVT TYSP LNK+FCQLAKTCPVQLWV S PPP T VRAMAIYK+S+ +TEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR +YLDDRNTFRHSVVVPYEPPEVGSD TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGN+LGRNSFEVRVCACPGRDRRTEEEN KKGEP E PPGSTKRALP +TSSSP KKKPLDGEYFTLQIRGRER+EMFR LNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKKLMFK EG DSD</Hsp_midline>
299
+ </Hsp>
300
+ </Hit_hsps>
301
+ </Hit>
302
+ <Hit>
303
+ <Hit_num>11</Hit_num>
304
+ <Hit_id>gnl|BL_ORD_ID|11</Hit_id>
305
+ <Hit_def>P53_FELCA P41685 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
306
+ <Hit_accession>11</Hit_accession>
307
+ <Hit_len>386</Hit_len>
308
+ <Hit_hsps>
309
+ <Hsp>
310
+ <Hsp_num>1</Hsp_num>
311
+ <Hsp_bit-score>602.823</Hsp_bit-score>
312
+ <Hsp_score>1553</Hsp_score>
313
+ <Hsp_evalue>1.10903e-175</Hsp_evalue>
314
+ <Hsp_query-from>1</Hsp_query-from>
315
+ <Hsp_query-to>393</Hsp_query-to>
316
+ <Hsp_hit-from>1</Hsp_hit-from>
317
+ <Hsp_hit-to>386</Hsp_hit-to>
318
+ <Hsp_query-frame>1</Hsp_query-frame>
319
+ <Hsp_hit-frame>1</Hsp_hit-frame>
320
+ <Hsp_identity>303</Hsp_identity>
321
+ <Hsp_positive>325</Hsp_positive>
322
+ <Hsp_gaps>9</Hsp_gaps>
323
+ <Hsp_align-len>394</Hsp_align-len>
324
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
325
+ <Hsp_hseq>MQEPPLELTIEPPLSQETFSELWNLLPENNVLSSELSSAMNELPLS-EDVANWL--DEAPDDASGMSAVPAPAAPAPATPAPAI-----SWPLSSFVPSQKTYPGAYGFHLGFLQSGTAKSVTCTYSPPLNKLFCQLAKTCPVQLWVRSPPPPGTCVRAMAIYKKSEFMTEVVRRCPHHERCPDSSDGLAPPQHLIRVEGNLHAKYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPIITIITLEDSNGKLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPEPPPGSTKRALPPSTSSTPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKPMLKREGLDSD</Hsp_hseq>
326
+ <Hsp_midline>M+EP + ++EPPLSQETFS+LW LLPENNVLS S AM++L LS +D+ W D PD+ SWPLSS VPSQKTY G+YGF LGFL SGTAKSVTCTYSP LNK+FCQLAKTCPVQLWV S PPPGT VRAMAIYK+S+ MTEVVRRCPHHERC DS DGLAPPQHLIRVEGNL +YLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPI+TIITLEDS+G LLGRNSFEVRVCACPGRDRRTEEEN RKKGEP E PPGSTKRALP +TSS+P KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKK M K EG DSD</Hsp_midline>
327
+ </Hsp>
328
+ </Hit_hsps>
329
+ </Hit>
330
+ <Hit>
331
+ <Hit_num>12</Hit_num>
332
+ <Hit_id>gnl|BL_ORD_ID|5</Hit_id>
333
+ <Hit_def>P53_CAVPO Q9WUR6 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
334
+ <Hit_accession>5</Hit_accession>
335
+ <Hit_len>391</Hit_len>
336
+ <Hit_hsps>
337
+ <Hsp>
338
+ <Hsp_num>1</Hsp_num>
339
+ <Hsp_bit-score>600.512</Hsp_bit-score>
340
+ <Hsp_score>1547</Hsp_score>
341
+ <Hsp_evalue>5.50404e-175</Hsp_evalue>
342
+ <Hsp_query-from>1</Hsp_query-from>
343
+ <Hsp_query-to>393</Hsp_query-to>
344
+ <Hsp_hit-from>1</Hsp_hit-from>
345
+ <Hsp_hit-to>391</Hsp_hit-to>
346
+ <Hsp_query-frame>1</Hsp_query-frame>
347
+ <Hsp_hit-frame>1</Hsp_hit-frame>
348
+ <Hsp_identity>297</Hsp_identity>
349
+ <Hsp_positive>319</Hsp_positive>
350
+ <Hsp_gaps>2</Hsp_gaps>
351
+ <Hsp_align-len>393</Hsp_align-len>
352
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
353
+ <Hsp_hseq>MEEPHSDLSIEPPLSQETFSDLWKLLPENNVLSDSLSPPMDHLLLSPEEVASWLGENPDGD--GHVSAAPVSEAPTSAGPALVAPAPATSWPLSSSVPSHKPYRGSYGFEVHFLKSGTAKSVTCTYSPGLNKLFCQLAKTCPVQVWVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLHAEYVDDRTTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGKLLGRDSFEVRVCACPGRDRRTEEENFRKKGGLCPEPTPGNIKRALPTSTSSSPQPKKKPLDAEYFTLKIRGRKNFEILREINEALEFKDAQTEKEPGESRPHSSYPKSKKGQSTSCHKKLMFKREGLDSD</Hsp_hseq>
354
+ <Hsp_midline>MEEP SD S+EPPLSQETFSDLWKLLPENNVLS S MD L+LSP+++ W E+P D SWPLSSSVPS K Y+GSYGF + FL SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNL EY+DDR TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSG LLGR+SFEVRVCACPGRDRRTEEEN RKKG E PG+ KRALP +TSSSPQPKKKPLD EYFTL+IRGR+ FE+ RE+NEALE KDAQ KEPG SR HSS+ KSKKGQSTS HKKLMFK EG DSD</Hsp_midline>
355
+ </Hsp>
356
+ </Hit_hsps>
357
+ </Hit>
358
+ <Hit>
359
+ <Hit_num>13</Hit_num>
360
+ <Hit_id>gnl|BL_ORD_ID|27</Hit_id>
361
+ <Hit_def>P53_SHEEP P51664 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
362
+ <Hit_accession>27</Hit_accession>
363
+ <Hit_len>382</Hit_len>
364
+ <Hit_hsps>
365
+ <Hsp>
366
+ <Hsp_num>1</Hsp_num>
367
+ <Hsp_bit-score>595.89</Hsp_bit-score>
368
+ <Hsp_score>1535</Hsp_score>
369
+ <Hsp_evalue>1.35569e-173</Hsp_evalue>
370
+ <Hsp_query-from>1</Hsp_query-from>
371
+ <Hsp_query-to>393</Hsp_query-to>
372
+ <Hsp_hit-from>1</Hsp_hit-from>
373
+ <Hsp_hit-to>382</Hsp_hit-to>
374
+ <Hsp_query-frame>1</Hsp_query-frame>
375
+ <Hsp_hit-frame>1</Hsp_hit-frame>
376
+ <Hsp_identity>299</Hsp_identity>
377
+ <Hsp_positive>320</Hsp_positive>
378
+ <Hsp_gaps>13</Hsp_gaps>
379
+ <Hsp_align-len>394</Hsp_align-len>
380
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
381
+ <Hsp_hseq>MEESQAELGVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDLLPYSEDVVTWLDECPNE------------APQMPEPPAQAALAPATSWPLSSFVPSQKTYPGNYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRSPHHERSSDYSDGLAPPQHLIRVEGNLRAEYFDDRNTFRHSVVVPYESPEIESECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSRGNLLGRSSFEVRVCACPGRDRRTEEENFRKKGQSCPEPPPGSTKRALPSSTSSSPQQKKKPLDGEYFTLQIRGRKRFEMFRELNEALELMDAQAGREPGESRAHSSHLKSKKGPSPSCHKKPMLKREGPDSD</Hsp_hseq>
382
+ <Hsp_midline>MEE Q++ VEPPLSQETFSDLW LLPENN+LS S +DDL+ +D+ W E P SWPLSS VPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRR PHHER SD SDGLAPPQHLIRVEGNLR EY DDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGR+SFEVRVCACPGRDRRTEEEN RKKG+ E PPGSTKRALP++TSSSPQ KKKPLDGEYFTLQIRGR+RFEMFRELNEALEL DAQAG+EPG SRAHSSHLKSKKG S S HKK M K EGPDSD</Hsp_midline>
383
+ </Hsp>
384
+ </Hit_hsps>
385
+ </Hit>
386
+ <Hit>
387
+ <Hit_num>14</Hit_num>
388
+ <Hit_id>gnl|BL_ORD_ID|19</Hit_id>
389
+ <Hit_def>P53_MESAU Q00366 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
390
+ <Hit_accession>19</Hit_accession>
391
+ <Hit_len>396</Hit_len>
392
+ <Hit_hsps>
393
+ <Hsp>
394
+ <Hsp_num>1</Hsp_num>
395
+ <Hsp_bit-score>594.349</Hsp_bit-score>
396
+ <Hsp_score>1531</Hsp_score>
397
+ <Hsp_evalue>3.94446e-173</Hsp_evalue>
398
+ <Hsp_query-from>1</Hsp_query-from>
399
+ <Hsp_query-to>393</Hsp_query-to>
400
+ <Hsp_hit-from>1</Hsp_hit-from>
401
+ <Hsp_hit-to>396</Hsp_hit-to>
402
+ <Hsp_query-frame>1</Hsp_query-frame>
403
+ <Hsp_hit-frame>1</Hsp_hit-frame>
404
+ <Hsp_identity>300</Hsp_identity>
405
+ <Hsp_positive>324</Hsp_positive>
406
+ <Hsp_gaps>7</Hsp_gaps>
407
+ <Hsp_align-len>398</Hsp_align-len>
408
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQ-AMDDLMLSPDDIEQWFTEDPGP----DEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
409
+ <Hsp_hseq>MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVAGWL-EDPGEALQGSAAAAAPAAPAAEDPVAETPAPVASAPATPWPLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVSSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDGLAPPQHLIRVEGNMHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPQPKRKTLDGEYFTLKIRGQERFKMFQELNEALELKDAQALKASEDSGAHSSYLKSKKGQSASRLKKLMIKREGPDSD</Hsp_hseq>
410
+ <Hsp_midline>MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LPS ++++L LS +++ W EDPG WPLSSSVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ DGLAPPQHLIRVEGN+ EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP ELPP S KRALP NTSSSPQPK+K LDGEYFTL+IRG+ERF+MF+ELNEALELKDAQA K S AHSS+LKSKKGQS SR KKLM K EGPDSD</Hsp_midline>
411
+ </Hsp>
412
+ </Hit_hsps>
413
+ </Hit>
414
+ <Hit>
415
+ <Hit_num>15</Hit_num>
416
+ <Hit_id>gnl|BL_ORD_ID|8</Hit_id>
417
+ <Hit_def>P53_CRIGR O09185 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
418
+ <Hit_accession>8</Hit_accession>
419
+ <Hit_len>393</Hit_len>
420
+ <Hit_hsps>
421
+ <Hsp>
422
+ <Hsp_num>1</Hsp_num>
423
+ <Hsp_bit-score>594.349</Hsp_bit-score>
424
+ <Hsp_score>1531</Hsp_score>
425
+ <Hsp_evalue>3.94446e-173</Hsp_evalue>
426
+ <Hsp_query-from>1</Hsp_query-from>
427
+ <Hsp_query-to>393</Hsp_query-to>
428
+ <Hsp_hit-from>1</Hsp_hit-from>
429
+ <Hsp_hit-to>393</Hsp_hit-to>
430
+ <Hsp_query-frame>1</Hsp_query-frame>
431
+ <Hsp_hit-frame>1</Hsp_hit-frame>
432
+ <Hsp_identity>296</Hsp_identity>
433
+ <Hsp_positive>321</Hsp_positive>
434
+ <Hsp_gaps>2</Hsp_gaps>
435
+ <Hsp_align-len>394</Hsp_align-len>
436
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQ-AMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
437
+ <Hsp_hseq>MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVTGWLEDSGGALQGVAAAAASTAEDPVTETPAPVASAPATPWPLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVNSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDSLAPPQHLIRVEGNLHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPPPKKKTLDGEYFTLKIRGHERFKMFQELNEALELKDAQASKGSEDNGAHSSYLKSKKGQSASRLKKLMIKREGPDSD</Hsp_hseq>
438
+ <Hsp_midline>MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LPS ++++L LS +++ W + G + WPLSSSVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV+STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ D LAPPQHLIRVEGNL EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP ELPP S KRALP NTSSSP PKKK LDGEYFTL+IRG ERF+MF+ELNEALELKDAQA K + AHSS+LKSKKGQS SR KKLM K EGPDSD</Hsp_midline>
439
+ </Hsp>
440
+ </Hit_hsps>
441
+ </Hit>
442
+ <Hit>
443
+ <Hit_num>16</Hit_num>
444
+ <Hit_id>gnl|BL_ORD_ID|2</Hit_id>
445
+ <Hit_def>P53_BOVIN P67939 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
446
+ <Hit_accession>2</Hit_accession>
447
+ <Hit_len>386</Hit_len>
448
+ <Hit_hsps>
449
+ <Hsp>
450
+ <Hsp_num>1</Hsp_num>
451
+ <Hsp_bit-score>588.956</Hsp_bit-score>
452
+ <Hsp_score>1517</Hsp_score>
453
+ <Hsp_evalue>1.65722e-171</Hsp_evalue>
454
+ <Hsp_query-from>1</Hsp_query-from>
455
+ <Hsp_query-to>393</Hsp_query-to>
456
+ <Hsp_hit-from>1</Hsp_hit-from>
457
+ <Hsp_hit-to>386</Hsp_hit-to>
458
+ <Hsp_query-frame>1</Hsp_query-frame>
459
+ <Hsp_hit-frame>1</Hsp_hit-frame>
460
+ <Hsp_identity>299</Hsp_identity>
461
+ <Hsp_positive>318</Hsp_positive>
462
+ <Hsp_gaps>9</Hsp_gaps>
463
+ <Hsp_align-len>394</Hsp_align-len>
464
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
465
+ <Hsp_hseq>MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWLDECPNE-------APQMPEPSAPAAPPPATPAPATSWPLSSFVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD</Hsp_hseq>
466
+ <Hsp_midline>MEE Q++ +VEPPLSQETFSDLW LLPENN+LS S +DDL L D+ W E P SWPLSS VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+ E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA G+EPG SRAHSSHLKSKK S S HKK M K EGPDSD</Hsp_midline>
467
+ </Hsp>
468
+ </Hit_hsps>
469
+ </Hit>
470
+ <Hit>
471
+ <Hit_num>17</Hit_num>
472
+ <Hit_id>gnl|BL_ORD_ID|1</Hit_id>
473
+ <Hit_def>P53_BOSIN P67938 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
474
+ <Hit_accession>1</Hit_accession>
475
+ <Hit_len>386</Hit_len>
476
+ <Hit_hsps>
477
+ <Hsp>
478
+ <Hsp_num>1</Hsp_num>
479
+ <Hsp_bit-score>588.956</Hsp_bit-score>
480
+ <Hsp_score>1517</Hsp_score>
481
+ <Hsp_evalue>1.65722e-171</Hsp_evalue>
482
+ <Hsp_query-from>1</Hsp_query-from>
483
+ <Hsp_query-to>393</Hsp_query-to>
484
+ <Hsp_hit-from>1</Hsp_hit-from>
485
+ <Hsp_hit-to>386</Hsp_hit-to>
486
+ <Hsp_query-frame>1</Hsp_query-frame>
487
+ <Hsp_hit-frame>1</Hsp_hit-frame>
488
+ <Hsp_identity>299</Hsp_identity>
489
+ <Hsp_positive>318</Hsp_positive>
490
+ <Hsp_gaps>9</Hsp_gaps>
491
+ <Hsp_align-len>394</Hsp_align-len>
492
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
493
+ <Hsp_hseq>MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWLDECPNE-------APQMPEPSAPAAPPPATPAPATSWPLSSFVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD</Hsp_hseq>
494
+ <Hsp_midline>MEE Q++ +VEPPLSQETFSDLW LLPENN+LS S +DDL L D+ W E P SWPLSS VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+ E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA G+EPG SRAHSSHLKSKK S S HKK M K EGPDSD</Hsp_midline>
495
+ </Hsp>
496
+ </Hit_hsps>
497
+ </Hit>
498
+ <Hit>
499
+ <Hit_num>18</Hit_num>
500
+ <Hit_id>gnl|BL_ORD_ID|26</Hit_id>
501
+ <Hit_def>P53_RAT P10361 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
502
+ <Hit_accession>26</Hit_accession>
503
+ <Hit_len>391</Hit_len>
504
+ <Hit_hsps>
505
+ <Hsp>
506
+ <Hsp_num>1</Hsp_num>
507
+ <Hsp_bit-score>575.859</Hsp_bit-score>
508
+ <Hsp_score>1483</Hsp_score>
509
+ <Hsp_evalue>1.4518e-167</Hsp_evalue>
510
+ <Hsp_query-from>1</Hsp_query-from>
511
+ <Hsp_query-to>393</Hsp_query-to>
512
+ <Hsp_hit-from>1</Hsp_hit-from>
513
+ <Hsp_hit-to>391</Hsp_hit-to>
514
+ <Hsp_query-frame>1</Hsp_query-frame>
515
+ <Hsp_hit-frame>1</Hsp_hit-frame>
516
+ <Hsp_identity>295</Hsp_identity>
517
+ <Hsp_positive>317</Hsp_positive>
518
+ <Hsp_gaps>8</Hsp_gaps>
519
+ <Hsp_align-len>396</Hsp_align-len>
520
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPS---QAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
521
+ <Hsp_hseq>MEDSQSDMSIELPLSQETFSCLWKLLPPDDILPTTATGSPNSMEDLFL-PQDVAELLE---GPEEALQVSAPAAQEPGTEAPAPVAPASATP-WPLSSSVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSISLNKLFCQLAKTCPVQLWVTSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNPYAEYLDDRQTFRHSVVVPYEPPEVGSDYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEEHCPELPPGSAKRALPTSTSSSPQQKKKPLDGEYFTLKIRGRERFEMFRELNEALELKDARAAEESGDSRAHSSYPKTKKGQSTSRHKKPMIKKVGPDSD</Hsp_hseq>
522
+ <Hsp_midline>ME+ QSD S+E PLSQETFS LWKLLP +++L + +M+DL L P D+ + GP+E WPLSSSVPSQKTYQG+YGF LGFL SGTAKSV CTYS +LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGN EYLDDR TFRHSVVVPYEPPEVGSD TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK E ELPPGS KRALP +TSSSPQ KKKPLDGEYFTL+IRGRERFEMFRELNEALELKDA+A +E G SRAHSS+ K+KKGQSTSRHKK M K GPDSD</Hsp_midline>
523
+ </Hsp>
524
+ </Hit_hsps>
525
+ </Hit>
526
+ <Hit>
527
+ <Hit_num>19</Hit_num>
528
+ <Hit_id>gnl|BL_ORD_ID|20</Hit_id>
529
+ <Hit_def>P53_MOUSE P02340 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
530
+ <Hit_accession>20</Hit_accession>
531
+ <Hit_len>390</Hit_len>
532
+ <Hit_hsps>
533
+ <Hsp>
534
+ <Hsp_num>1</Hsp_num>
535
+ <Hsp_bit-score>574.318</Hsp_bit-score>
536
+ <Hsp_score>1479</Hsp_score>
537
+ <Hsp_evalue>4.22408e-167</Hsp_evalue>
538
+ <Hsp_query-from>1</Hsp_query-from>
539
+ <Hsp_query-to>393</Hsp_query-to>
540
+ <Hsp_hit-from>4</Hsp_hit-from>
541
+ <Hsp_hit-to>390</Hsp_hit-to>
542
+ <Hsp_query-frame>1</Hsp_query-frame>
543
+ <Hsp_hit-frame>1</Hsp_hit-frame>
544
+ <Hsp_identity>293</Hsp_identity>
545
+ <Hsp_positive>314</Hsp_positive>
546
+ <Hsp_gaps>6</Hsp_gaps>
547
+ <Hsp_align-len>393</Hsp_align-len>
548
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
549
+ <Hsp_hseq>MEESQSDISLELPLSQETFSGLWKLLPPEDIL-PSP-HCMDDLLL-PQDVEEFFE---GPSEALRVSGAPAAQDPVTETPGPVAPAPATPWPLSSFVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEVLCPELPPGSAKRALPTCTSASPPQKKKPLDGEYFTLKIRGRKRFEMFRELNEALELKDAHATEESGDSRAHSSYLKTKKGQSTSRHKKTMVKKVGPDSD</Hsp_hseq>
550
+ <Hsp_midline>MEE QSD S+E PLSQETFS LWKLLP ++L P P MDDL+L P D+E++F GP E WPLSS VPSQKTYQG+YGF LGFL SGTAKSV CTYSP LNK+FCQLAKTCPVQLWV +TPP G+RVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGNL EYL+DR TFRHSVVVPYEPPE GS+ TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK ELPPGS KRALP TS+SP KKKPLDGEYFTL+IRGR+RFEMFRELNEALELKDA A +E G SRAHSS+LK+KKGQSTSRHKK M K GPDSD</Hsp_midline>
551
+ </Hsp>
552
+ </Hit_hsps>
553
+ </Hit>
554
+ <Hit>
555
+ <Hit_num>20</Hit_num>
556
+ <Hit_id>gnl|BL_ORD_ID|28</Hit_id>
557
+ <Hit_def>P53_SPEBE Q64662 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
558
+ <Hit_accession>28</Hit_accession>
559
+ <Hit_len>314</Hit_len>
560
+ <Hit_hsps>
561
+ <Hsp>
562
+ <Hsp_num>1</Hsp_num>
563
+ <Hsp_bit-score>530.02</Hsp_bit-score>
564
+ <Hsp_score>1364</Hsp_score>
565
+ <Hsp_evalue>9.13575e-154</Hsp_evalue>
566
+ <Hsp_query-from>21</Hsp_query-from>
567
+ <Hsp_query-to>335</Hsp_query-to>
568
+ <Hsp_hit-from>1</Hsp_hit-from>
569
+ <Hsp_hit-to>313</Hsp_hit-to>
570
+ <Hsp_query-frame>1</Hsp_query-frame>
571
+ <Hsp_hit-frame>1</Hsp_hit-frame>
572
+ <Hsp_identity>256</Hsp_identity>
573
+ <Hsp_positive>268</Hsp_positive>
574
+ <Hsp_gaps>2</Hsp_gaps>
575
+ <Hsp_align-len>315</Hsp_align-len>
576
+ <Hsp_qseq>DLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGR</Hsp_qseq>
577
+ <Hsp_hseq>DLWNLLPENNVLSPVLSPPMDDLLLSSEDVENWF--DKGPDEALQMSAAPAPKAPTPAASTLAAPTPAISWPLSSSVPSQNTYPGVYGFRLGFIHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSESTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKRGEPCPEPPPGSTKRALPTGTNSSPQPKKKPLDGEYFTLKIRGR</Hsp_hseq>
578
+ <Hsp_midline>DLW LLPENNVLSP+ S MDDL+LS +D+E WF D GPDE SWPLSSSVPSQ TY G YGFRLGF+HSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGS+ TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RK+GEP E PPGSTKRALP T+SSPQPKKKPLDGEYFTL+IRGR</Hsp_midline>
579
+ </Hsp>
580
+ </Hit_hsps>
581
+ </Hit>
582
+ <Hit>
583
+ <Hit_num>21</Hit_num>
584
+ <Hit_id>gnl|BL_ORD_ID|12</Hit_id>
585
+ <Hit_def>P53_HORSE P79892 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
586
+ <Hit_accession>12</Hit_accession>
587
+ <Hit_len>280</Hit_len>
588
+ <Hit_hsps>
589
+ <Hsp>
590
+ <Hsp_num>1</Hsp_num>
591
+ <Hsp_bit-score>448.743</Hsp_bit-score>
592
+ <Hsp_score>1153</Hsp_score>
593
+ <Hsp_evalue>2.67666e-129</Hsp_evalue>
594
+ <Hsp_query-from>39</Hsp_query-from>
595
+ <Hsp_query-to>329</Hsp_query-to>
596
+ <Hsp_hit-from>2</Hsp_hit-from>
597
+ <Hsp_hit-to>280</Hsp_hit-to>
598
+ <Hsp_query-frame>1</Hsp_query-frame>
599
+ <Hsp_hit-frame>1</Hsp_hit-frame>
600
+ <Hsp_identity>227</Hsp_identity>
601
+ <Hsp_positive>238</Hsp_positive>
602
+ <Hsp_gaps>14</Hsp_gaps>
603
+ <Hsp_align-len>292</Hsp_align-len>
604
+ <Hsp_qseq>AMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFT</Hsp_qseq>
605
+ <Hsp_hseq>AVNNLLLSPD-VVNWL--DEGPDEAPRMPAAPAPLAPAPAT----------SWPLSSFVPSQKTYPGCYGFRLGFLNSGTAKSVTCTYSPTLNKLFCQLAKTCPVQLLVSSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKEEPCPEPPPRSTKRVLSSNTSSSPPQKKKPLDGEYFT</Hsp_hseq>
606
+ <Hsp_midline>A+++L+LSPD + W D GPDE SWPLSS VPSQKTY G YGFRLGFL+SGTAKSVTCTYSP LNK+FCQLAKTCPVQL V S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKK EP E PP STKR L +NTSSSP KKKPLDGEYFT</Hsp_midline>
607
+ </Hsp>
608
+ </Hit_hsps>
609
+ </Hit>
610
+ <Hit>
611
+ <Hit_num>22</Hit_num>
612
+ <Hit_id>gnl|BL_ORD_ID|10</Hit_id>
613
+ <Hit_def>P53_EQUAS Q29480 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
614
+ <Hit_accession>10</Hit_accession>
615
+ <Hit_len>207</Hit_len>
616
+ <Hit_hsps>
617
+ <Hsp>
618
+ <Hsp_num>1</Hsp_num>
619
+ <Hsp_bit-score>374.015</Hsp_bit-score>
620
+ <Hsp_score>959</Hsp_score>
621
+ <Hsp_evalue>8.37873e-107</Hsp_evalue>
622
+ <Hsp_query-from>126</Hsp_query-from>
623
+ <Hsp_query-to>330</Hsp_query-to>
624
+ <Hsp_hit-from>1</Hsp_hit-from>
625
+ <Hsp_hit-to>206</Hsp_hit-to>
626
+ <Hsp_query-frame>1</Hsp_query-frame>
627
+ <Hsp_hit-frame>1</Hsp_hit-frame>
628
+ <Hsp_identity>181</Hsp_identity>
629
+ <Hsp_positive>187</Hsp_positive>
630
+ <Hsp_gaps>1</Hsp_gaps>
631
+ <Hsp_align-len>206</Hsp_align-len>
632
+ <Hsp_qseq>YSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTL</Hsp_qseq>
633
+ <Hsp_hseq>YSPALNKMFCQLAKTCPVYLRISSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTLRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKEEPCPEPPPRSTKRVLSSNTSSSPPQKEDPLDGEYFTL</Hsp_hseq>
634
+ <Hsp_midline>YSPALNKMFCQLAKTCPV L + S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR EYLDDRNT RHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKK EP E PP STKR L +NTSSSP K+ PLDGEYFTL</Hsp_midline>
635
+ </Hsp>
636
+ </Hit_hsps>
637
+ </Hit>
638
+ <Hit>
639
+ <Hit_num>23</Hit_num>
640
+ <Hit_id>gnl|BL_ORD_ID|7</Hit_id>
641
+ <Hit_def>P53_CHICK P10360 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
642
+ <Hit_accession>7</Hit_accession>
643
+ <Hit_len>367</Hit_len>
644
+ <Hit_hsps>
645
+ <Hsp>
646
+ <Hsp_num>1</Hsp_num>
647
+ <Hsp_bit-score>355.91</Hsp_bit-score>
648
+ <Hsp_score>912</Hsp_score>
649
+ <Hsp_evalue>2.36124e-101</Hsp_evalue>
650
+ <Hsp_query-from>5</Hsp_query-from>
651
+ <Hsp_query-to>386</Hsp_query-to>
652
+ <Hsp_hit-from>4</Hsp_hit-from>
653
+ <Hsp_hit-to>364</Hsp_hit-to>
654
+ <Hsp_query-frame>1</Hsp_query-frame>
655
+ <Hsp_hit-frame>1</Hsp_hit-frame>
656
+ <Hsp_identity>197</Hsp_identity>
657
+ <Hsp_positive>240</Hsp_positive>
658
+ <Hsp_gaps>27</Hsp_gaps>
659
+ <Hsp_align-len>385</Hsp_align-len>
660
+ <Hsp_qseq>QSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFK</Hsp_qseq>
661
+ <Hsp_hseq>EMEPLLEPT---EVFMDLWSMLPYSMQQLPLPEDHSNWQELSPLE-----PSDPPPPPPPPPLPLAAAAPPPLNPPTPPRAAP------SPVVPSTEDYGGDFDFRVGFVEAGTAKSVTCTYSPVLNKVYCRLAKPCPVQVRVGVAPPPGSSLRAVAVYKKSEHVAEVVRRCPHHERCGGGTDGLAPAQHLIRVEGNPQARYHDDETTKRHSVVVPYEPPEVGSDCTTVLYNFMCNSSCMGGMNRRPILTILTLEGPGGQLLGRRCFEVRVCACPGRDRKIEEENFRKRGG-----AGGVAKRAMSPPTEAPEPPKKRVLNPDNEIFYLQVRGRRRYEMLKEINEALQL--AEGGSAPRPSKGRRVKV---EGPQPSCGKKLLQK</Hsp_hseq>
662
+ <Hsp_midline>+ +P +EP E F DLW +LP + PLP + LSP + DP P S VPS + Y G + FR+GF+ +GTAKSVTCTYSP LNK++C+LAK CPVQ+ V PPPG+ +RA+A+YK+S+H+ EVVRRCPHHERC +DGLAP QHLIRVEGN + Y DD T RHSVVVPYEPPEVGSDCTT+ YN+MCNSSCMGGMNRRPILTI+TLE G LLGR FEVRVCACPGRDR+ EEEN RK+G G KRA+ T + PKK+ L D E F LQ+RGR R+EM +E+NEAL+L A+ G P S+ + +G S KKL+ K</Hsp_midline>
663
+ </Hsp>
664
+ </Hit_hsps>
665
+ </Hit>
666
+ <Hit>
667
+ <Hit_num>24</Hit_num>
668
+ <Hit_id>gnl|BL_ORD_ID|21</Hit_id>
669
+ <Hit_def>P53_ONCMY P25035 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
670
+ <Hit_accession>21</Hit_accession>
671
+ <Hit_len>396</Hit_len>
672
+ <Hit_hsps>
673
+ <Hsp>
674
+ <Hsp_num>1</Hsp_num>
675
+ <Hsp_bit-score>343.969</Hsp_bit-score>
676
+ <Hsp_score>881</Hsp_score>
677
+ <Hsp_evalue>9.28528e-98</Hsp_evalue>
678
+ <Hsp_query-from>9</Hsp_query-from>
679
+ <Hsp_query-to>393</Hsp_query-to>
680
+ <Hsp_hit-from>7</Hsp_hit-from>
681
+ <Hsp_hit-to>396</Hsp_hit-to>
682
+ <Hsp_query-frame>1</Hsp_query-frame>
683
+ <Hsp_hit-frame>1</Hsp_hit-frame>
684
+ <Hsp_identity>194</Hsp_identity>
685
+ <Hsp_positive>245</Hsp_positive>
686
+ <Hsp_gaps>33</Hsp_gaps>
687
+ <Hsp_align-len>404</Hsp_align-len>
688
+ <Hsp_qseq>SVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTED----PGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHEL---PPGSTKRALPNNTSSSPQP------KKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKK---GQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
689
+ <Hsp_hseq>NVSLPLSQESFEDLWKM-------------NLNLVAVQPPETESWVGYDNFMMEAPLQVEFDPSLFEVSATEPAPQPSISTLDTGS-PPTSTVPTTSDYPGALGFQLRFLQSSTAKSVTCTYSPDLNKLFCQLAKTCPVQIVVDHPPPPGAVVRALAIYKKLSDVADVVRRCPHHQSTSENNEGPAPRGHLVRVEGNQRSEYMEDGNTLRHSVLVPYEPPQVGSECTTVLYNFMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEEINLKKQQETTLETKTKPAQGIKRAMKEASLPAPQPGASKKTKSSPAVSDDEIYTLQIRGKEKYEMLKKFNDSLELSELVPVADADKYRQKCLTKRVAKRDFGVGPKKRKKLLVKEEKSDSD</Hsp_hseq>
690
+ <Hsp_midline>+V PLSQE+F DLWK+ ++ + + P + E W D P + S P +S+VP+ Y G+ GF+L FL S TAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD PPPG VRA+AIYK+ + +VVRRCPHH+ S++ +G AP HL+RVEGN R EY++D NT RHSV+VPYEPP+VGS+CTT+ YN+MCNSSCMGGMNRRPILTIITLE G LLGR SFEVRVCACPGRDR+TEE NL+K+ E E P KRA+ + +PQP K P D E +TLQIRG+E++EM ++ N++LEL + + R + K G + KKL+ K E DSD</Hsp_midline>
691
+ </Hsp>
692
+ </Hit_hsps>
693
+ </Hit>
694
+ <Hit>
695
+ <Hit_num>25</Hit_num>
696
+ <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
697
+ <Hit_def>P53_BARBU Q9W678 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
698
+ <Hit_accession>0</Hit_accession>
699
+ <Hit_len>369</Hit_len>
700
+ <Hit_hsps>
701
+ <Hsp>
702
+ <Hsp_num>1</Hsp_num>
703
+ <Hsp_bit-score>341.658</Hsp_bit-score>
704
+ <Hsp_score>875</Hsp_score>
705
+ <Hsp_evalue>4.60823e-97</Hsp_evalue>
706
+ <Hsp_query-from>92</Hsp_query-from>
707
+ <Hsp_query-to>393</Hsp_query-to>
708
+ <Hsp_hit-from>56</Hsp_hit-from>
709
+ <Hsp_hit-to>369</Hsp_hit-to>
710
+ <Hsp_query-frame>1</Hsp_query-frame>
711
+ <Hsp_hit-frame>1</Hsp_hit-frame>
712
+ <Hsp_identity>181</Hsp_identity>
713
+ <Hsp_positive>219</Hsp_positive>
714
+ <Hsp_gaps>12</Hsp_gaps>
715
+ <Hsp_align-len>314</Hsp_align-len>
716
+ <Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPH--HELPPGSTKRALPNNTSSSPQP---KKKPLDG----EYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAH-SSHLKSKKGQS--TSRHKKLMFKTEGPDSD</Hsp_qseq>
717
+ <Hsp_hseq>PPTASVPVATDYPGEHGFKLGFPQSGTAKSVTCTYSSDLNKLFCQLAKTCPVQMVVNVAPPQGSVIRATAIYKKSEHVAEVVRRCPHHERTPDGDGLAPAAHLIRVEGNSRALYREDDVNSRHSVVVPYEVPQLGSEFTTVLYNFMCNSSCMGGMNRRPILTIISLETHDGQLLGRRSFEVRVCACPGRDRKTEESNFRKDQETKTLDKIPSANKRSLTKDSTSSVPRPEGSKKAKLSGSSDEEIYTLQVRGKERYEMLKKINDSLELSDVVPPSEMDRYRQKLLTKGKKKDGQTPEPKRGKKLMVKDEKSDSD</Hsp_hseq>
718
+ <Hsp_midline>P ++SVP Y G +GF+LGF SGTAKSVTCTYS LNK+FCQLAKTCPVQ+ V+ PP G+ +RA AIYK+S+H+ EVVRRCPHHER D DGLAP HLIRVEGN R Y +D RHSVVVPYE P++GS+ TT+ YN+MCNSSCMGGMNRRPILTII+LE G LLGR SFEVRVCACPGRDR+TEE N RK E ++P + + ++TSS P+P KK L G E +TLQ+RG+ER+EM +++N++LEL D E R + K K GQ+ R KKLM K E DSD</Hsp_midline>
719
+ </Hsp>
720
+ </Hit_hsps>
721
+ </Hit>
722
+ <Hit>
723
+ <Hit_num>26</Hit_num>
724
+ <Hit_id>gnl|BL_ORD_ID|3</Hit_id>
725
+ <Hit_def>P53_BRARE P79734 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
726
+ <Hit_accession>3</Hit_accession>
727
+ <Hit_len>373</Hit_len>
728
+ <Hit_hsps>
729
+ <Hsp>
730
+ <Hsp_num>1</Hsp_num>
731
+ <Hsp_bit-score>338.576</Hsp_bit-score>
732
+ <Hsp_score>867</Hsp_score>
733
+ <Hsp_evalue>3.9011e-96</Hsp_evalue>
734
+ <Hsp_query-from>92</Hsp_query-from>
735
+ <Hsp_query-to>393</Hsp_query-to>
736
+ <Hsp_hit-from>60</Hsp_hit-from>
737
+ <Hsp_hit-to>373</Hsp_hit-to>
738
+ <Hsp_query-frame>1</Hsp_query-frame>
739
+ <Hsp_hit-frame>1</Hsp_hit-frame>
740
+ <Hsp_identity>181</Hsp_identity>
741
+ <Hsp_positive>215</Hsp_positive>
742
+ <Hsp_gaps>12</Hsp_gaps>
743
+ <Hsp_align-len>314</Hsp_align-len>
744
+ <Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGS-TKRALPNNTSSS---PQPKKK----PLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTS---RHKKLMFKTEG-PDSD</Hsp_qseq>
745
+ <Hsp_hseq>PPTSTVPETSDYPGDHGFRLRFPQSGTAKSVTCTYSPDLNKLFCQLAKTCPVQMVVDVAPPQGSVVRATAIYKKSEHVAEVVRRCPHHERTPDGDNLAPAGHLIRVEGNQRANYREDNITLRHSVFVPYEAPQLGAEWTTVLLNYMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEESNFKKDQETKTMAKTTTGTKRSLVKESSSATLRPEGSKKAKGSSSDEEIFTLQVRGRERYEILKKLNDSLELSDVVPASDAEKYRQKFMTKNKKENRESSEPKQGKKLMVKDEGRSDSD</Hsp_hseq>
746
+ <Hsp_midline>P +S+VP Y G +GFRL F SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD PP G+ VRA AIYK+S+H+ EVVRRCPHHER D D LAP HLIRVEGN R Y +D T RHSV VPYE P++G++ TT+ NYMCNSSCMGGMNRRPILTIITLE G LLGR SFEVRVCACPGRDR+TEE N +K E + TKR+L +SS+ P+ KK D E FTLQ+RGRER+E+ ++LN++LEL D + R K+ + +S + KKLM K EG DSD</Hsp_midline>
747
+ </Hsp>
748
+ </Hit_hsps>
749
+ </Hit>
750
+ <Hit>
751
+ <Hit_num>27</Hit_num>
752
+ <Hit_id>gnl|BL_ORD_ID|14</Hit_id>
753
+ <Hit_def>P53_ICTPU O93379 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
754
+ <Hit_accession>14</Hit_accession>
755
+ <Hit_len>376</Hit_len>
756
+ <Hit_hsps>
757
+ <Hsp>
758
+ <Hsp_num>1</Hsp_num>
759
+ <Hsp_bit-score>333.183</Hsp_bit-score>
760
+ <Hsp_score>853</Hsp_score>
761
+ <Hsp_evalue>1.63901e-94</Hsp_evalue>
762
+ <Hsp_query-from>10</Hsp_query-from>
763
+ <Hsp_query-to>393</Hsp_query-to>
764
+ <Hsp_hit-from>12</Hsp_hit-from>
765
+ <Hsp_hit-to>376</Hsp_hit-to>
766
+ <Hsp_query-frame>1</Hsp_query-frame>
767
+ <Hsp_hit-frame>1</Hsp_hit-frame>
768
+ <Hsp_identity>192</Hsp_identity>
769
+ <Hsp_positive>240</Hsp_positive>
770
+ <Hsp_gaps>41</Hsp_gaps>
771
+ <Hsp_align-len>395</Hsp_align-len>
772
+ <Hsp_qseq>VEPPLSQETFSDLW--KLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRAL---PNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDA--QAGKEPGGSRAHSSHLKSKKGQST---SRHKKLMFKTEGPDSD</Hsp_qseq>
773
+ <Hsp_hseq>VEPPDSQE-FAELWLRNLIVRDNSLWGKEEEIPDDLQEVPCDVLLSDMLQPQSS----------------------------SSPPTSTVPVTSDYPGLLNFTLHFQESSGTKSVTCTYSPDLNKLFCQLAKTCPVLMAVSSSPPPGSVLRATAVYKRSEHVAEVVRRCPHHERSNDSSDGPAPPGHLLRVEGNSRAVYQEDGNTQAHSVVVPYEPPQVGSQSTTVLYNYMCNSSCMGGMNRRPILTIITLETQDGHLLGRRTFEVRVCACPGRDRKTEESNFKKQQEPKTS-GKTLTKRSMKDPPSHPEASKKSKNSSSDDEIYTLQVRGKERYEFLKKINDGLELSDVVPPADQEKYRQKLLSKTCRKERDGAAGEPKRGKKRLVKEEKCDSD</Hsp_hseq>
774
+ <Hsp_midline>VEPP SQE F++LW L+ +N L + DDL P D+ P S P +S+VP Y G F L F S KSVTCTYSP LNK+FCQLAKTCPV + V S+PPPG+ +RA A+YK+S+H+ EVVRRCPHHER +DS DG APP HL+RVEGN R Y +D NT HSVVVPYEPP+VGS TT+ YNYMCNSSCMGGMNRRPILTIITLE G+LLGR +FEVRVCACPGRDR+TEE N +K+ EP TKR++ P++ +S + K D E +TLQ+RG+ER+E +++N+ LEL D A +E + S + ++ + R KK + K E DSD</Hsp_midline>
775
+ </Hsp>
776
+ </Hit_hsps>
777
+ </Hit>
778
+ <Hit>
779
+ <Hit_num>28</Hit_num>
780
+ <Hit_id>gnl|BL_ORD_ID|29</Hit_id>
781
+ <Hit_def>P53_TETMU Q9W679 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
782
+ <Hit_accession>29</Hit_accession>
783
+ <Hit_len>367</Hit_len>
784
+ <Hit_hsps>
785
+ <Hsp>
786
+ <Hsp_num>1</Hsp_num>
787
+ <Hsp_bit-score>267.7</Hsp_bit-score>
788
+ <Hsp_score>683</Hsp_score>
789
+ <Hsp_evalue>8.45682e-75</Hsp_evalue>
790
+ <Hsp_query-from>7</Hsp_query-from>
791
+ <Hsp_query-to>393</Hsp_query-to>
792
+ <Hsp_hit-from>3</Hsp_hit-from>
793
+ <Hsp_hit-to>367</Hsp_hit-to>
794
+ <Hsp_query-frame>1</Hsp_query-frame>
795
+ <Hsp_hit-frame>1</Hsp_hit-frame>
796
+ <Hsp_identity>159</Hsp_identity>
797
+ <Hsp_positive>220</Hsp_positive>
798
+ <Hsp_gaps>32</Hsp_gaps>
799
+ <Hsp_align-len>392</Hsp_align-len>
800
+ <Hsp_qseq>DPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKK-----KPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
801
+ <Hsp_hseq>EENISLPLSQDTFQDLW-----DNVSAP----PISTIQTAALENEAWPAERQMNMMCNFMDSTFNEALFNLLPEPPSRDGANSSSP---TVPVTTDYPGEYGFKLRFQKSGTAKSVTSTYSEILNKLYCQLAKTSLVEVLLGKDPPMGAVLRATAIYKKTEHVAEVVRRCPHHQ---NEDSAEHRSHLIRMEGSERAQYFEHPHTKRQSVTVPYEPPQLGSEFTTILLSFMCNSSCMGGMNRRPILTILTLETQEGIVLGRRCFEVRVCACPGRDRKTEETNSTKM---QNDAKDAKKRKSVPTPDSTTIKKSKTASSAEEDNNEVYTLQIRGRKRYEMLKKINDGLDLLE----NKPKSKATH-----RPDGPIPPSGKRLLHRGEKSDSD</Hsp_hseq>
802
+ <Hsp_midline>+ ++ PLSQ+TF DLW +NV +P + + + + E W E S P +VP Y G YGF+L F SGTAKSVT TYS LNK++CQLAKT V++ + PP G +RA AIYK+++H+ EVVRRCPHH+ + D HLIR+EG+ R +Y + +T R SV VPYEPP++GS+ TTI ++MCNSSCMGGMNRRPILTI+TLE G +LGR FEVRVCACPGRDR+TEE N K ++ ++++P S++ + K + + E +TLQIRGR+R+EM +++N+ L+L + +P H G K+L+ + E DSD</Hsp_midline>
803
+ </Hsp>
804
+ </Hit_hsps>
805
+ </Hit>
806
+ <Hit>
807
+ <Hit_num>29</Hit_num>
808
+ <Hit_id>gnl|BL_ORD_ID|22</Hit_id>
809
+ <Hit_def>P53_ORYLA P79820 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
810
+ <Hit_accession>22</Hit_accession>
811
+ <Hit_len>352</Hit_len>
812
+ <Hit_hsps>
813
+ <Hsp>
814
+ <Hsp_num>1</Hsp_num>
815
+ <Hsp_bit-score>262.307</Hsp_bit-score>
816
+ <Hsp_score>669</Hsp_score>
817
+ <Hsp_evalue>3.55304e-73</Hsp_evalue>
818
+ <Hsp_query-from>92</Hsp_query-from>
819
+ <Hsp_query-to>371</Hsp_query-to>
820
+ <Hsp_hit-from>77</Hsp_hit-from>
821
+ <Hsp_hit-to>351</Hsp_hit-to>
822
+ <Hsp_query-frame>1</Hsp_query-frame>
823
+ <Hsp_hit-frame>1</Hsp_hit-frame>
824
+ <Hsp_identity>142</Hsp_identity>
825
+ <Hsp_positive>190</Hsp_positive>
826
+ <Hsp_gaps>21</Hsp_gaps>
827
+ <Hsp_align-len>288</Hsp_align-len>
828
+ <Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPK-----KKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQA---GKEPGGSRAHSSHLKS</Hsp_qseq>
829
+ <Hsp_hseq>PPPTTVPVTTDYPGSYELELRFQKSGTAKSVTSTYSETLNKLYCQLAKTSPIEVRVSKEPPKGAILRATAVYKKTEHVADVVRRCPHHQ---NEDSVEHRSHLIRVEGSQLAQYFEDPYTKRQSVTVPYEPPQPGSEMTTILLSYMCNSSCMGGMNRRPILTILTLE-TEGLVLGRRCFEVRICACPGRDRKTEEES-RQKTQP--------KKRKVTPNTSSSKRKKSHSSGEEEDNREVFHFEVYGRERYEFLKKINDGLELLEKESKSKNKDSGMVPSSGKKLKS</Hsp_hseq>
830
+ <Hsp_midline>P ++VP Y GSY L F SGTAKSVT TYS LNK++CQLAKT P+++ V PP G +RA A+YK+++H+ +VVRRCPHH+ + D + HLIRVEG+ +Y +D T R SV VPYEPP+ GS+ TTI +YMCNSSCMGGMNRRPILTI+TLE + G +LGR FEVR+CACPGRDR+TEEE+ R+K +P KR + NTSSS + K ++ + E F ++ GRER+E +++N+ LEL + ++ K+ G + LKS</Hsp_midline>
831
+ </Hsp>
832
+ </Hit_hsps>
833
+ </Hit>
834
+ <Hit>
835
+ <Hit_num>30</Hit_num>
836
+ <Hit_id>gnl|BL_ORD_ID|24</Hit_id>
837
+ <Hit_def>P53_PLAFE O12946 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
838
+ <Hit_accession>24</Hit_accession>
839
+ <Hit_len>366</Hit_len>
840
+ <Hit_hsps>
841
+ <Hsp>
842
+ <Hsp_num>1</Hsp_num>
843
+ <Hsp_bit-score>259.225</Hsp_bit-score>
844
+ <Hsp_score>661</Hsp_score>
845
+ <Hsp_evalue>3.00783e-72</Hsp_evalue>
846
+ <Hsp_query-from>92</Hsp_query-from>
847
+ <Hsp_query-to>393</Hsp_query-to>
848
+ <Hsp_hit-from>70</Hsp_hit-from>
849
+ <Hsp_hit-to>366</Hsp_hit-to>
850
+ <Hsp_query-frame>1</Hsp_query-frame>
851
+ <Hsp_hit-frame>1</Hsp_hit-frame>
852
+ <Hsp_identity>145</Hsp_identity>
853
+ <Hsp_positive>197</Hsp_positive>
854
+ <Hsp_gaps>23</Hsp_gaps>
855
+ <Hsp_align-len>311</Hsp_align-len>
856
+ <Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEE------NLRKKGEPHHELPPGS---TKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
857
+ <Hsp_hseq>PPSSTVPVVTDYPGEYGFQLRFQKSGTAKSVTSTFSELLKKLYCQLAKTSPVEVLLSKEPPQGAVLRATAVYKKTEHVADVVRRCPHHQT---EDTAEHRSHLIRLEGSQRALYFEDPHTKRQSVTVPYEPPQLGSETTAILLSFMCNSSCMGGMNRRQILTILTLETPDGLVLGRRCFEVRVCACPGRDRKTDEESSTKTPNGPKQTKKRKQAPSNSAPHTTTVMKSKSSSSAEEE----DKEVFTVLVKGRERYEIIKKINEAFE---GAAEKE----KAKNKVAVKQELPVPSSGKRLVQRGERSDSD</Hsp_hseq>
858
+ <Hsp_midline>P SS+VP Y G YGF+L F SGTAKSVT T+S L K++CQLAKT PV++ + PP G +RA A+YK+++H+ +VVRRCPHH+ D HLIR+EG+ R Y +D +T R SV VPYEPP++GS+ T I ++MCNSSCMGGMNRR ILTI+TLE G +LGR FEVRVCACPGRDR+T+EE N K+ + + P S T + + +SSS + + D E FT+ ++GRER+E+ +++NEA E A KE +A + ++ S K+L+ + E DSD</Hsp_midline>
859
+ </Hsp>
860
+ </Hit_hsps>
861
+ </Hit>
862
+ </Iteration_hits>
863
+ <Iteration_stat>
864
+ <Statistics>
865
+ <Statistics_db-num>30</Statistics_db-num>
866
+ <Statistics_db-len>11169</Statistics_db-len>
867
+ <Statistics_hsp-len>53</Statistics_hsp-len>
868
+ <Statistics_eff-space>3.25686e+06</Statistics_eff-space>
869
+ <Statistics_kappa>0.041</Statistics_kappa>
870
+ <Statistics_lambda>0.267</Statistics_lambda>
871
+ <Statistics_entropy>0.14</Statistics_entropy>
872
+ </Statistics>
873
+ </Iteration_stat>
874
+ </Iteration>
875
+ </BlastOutput_iterations>
876
+ </BlastOutput>