bio 1.0.0 → 1.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (340) hide show
  1. data/bin/bioruby +14 -122
  2. data/bin/br_biofetch.rb +2 -2
  3. data/bin/br_bioflat.rb +2 -2
  4. data/bin/br_biogetseq.rb +2 -2
  5. data/bin/br_pmfetch.rb +3 -3
  6. data/doc/Changes-0.7.rd +77 -0
  7. data/doc/KEGG_API.rd +523 -232
  8. data/doc/KEGG_API.rd.ja +529 -207
  9. data/doc/Tutorial.rd +48 -11
  10. data/lib/bio.rb +59 -6
  11. data/lib/bio/alignment.rb +713 -103
  12. data/lib/bio/appl/bl2seq/report.rb +2 -18
  13. data/lib/bio/appl/blast.rb +108 -91
  14. data/lib/bio/appl/blast/format0.rb +33 -18
  15. data/lib/bio/appl/blast/format8.rb +6 -20
  16. data/lib/bio/appl/blast/report.rb +293 -429
  17. data/lib/bio/appl/blast/rexml.rb +8 -22
  18. data/lib/bio/appl/blast/wublast.rb +21 -12
  19. data/lib/bio/appl/blast/xmlparser.rb +180 -183
  20. data/lib/bio/appl/blat/report.rb +127 -30
  21. data/lib/bio/appl/clustalw.rb +87 -59
  22. data/lib/bio/appl/clustalw/report.rb +20 -22
  23. data/lib/bio/appl/emboss.rb +113 -20
  24. data/lib/bio/appl/fasta.rb +173 -198
  25. data/lib/bio/appl/fasta/format10.rb +244 -347
  26. data/lib/bio/appl/gcg/msf.rb +212 -0
  27. data/lib/bio/appl/gcg/seq.rb +195 -0
  28. data/lib/bio/appl/genscan/report.rb +5 -23
  29. data/lib/bio/appl/hmmer.rb +8 -45
  30. data/lib/bio/appl/hmmer/report.rb +2 -20
  31. data/lib/bio/appl/iprscan/report.rb +374 -0
  32. data/lib/bio/appl/mafft.rb +87 -50
  33. data/lib/bio/appl/mafft/report.rb +151 -44
  34. data/lib/bio/appl/muscle.rb +52 -0
  35. data/lib/bio/appl/phylip/alignment.rb +129 -0
  36. data/lib/bio/appl/phylip/distance_matrix.rb +96 -0
  37. data/lib/bio/appl/probcons.rb +41 -0
  38. data/lib/bio/appl/psort.rb +89 -96
  39. data/lib/bio/appl/psort/report.rb +6 -22
  40. data/lib/bio/appl/pts1.rb +263 -0
  41. data/lib/bio/appl/sim4.rb +26 -36
  42. data/lib/bio/appl/sim4/report.rb +2 -18
  43. data/lib/bio/appl/sosui/report.rb +5 -20
  44. data/lib/bio/appl/spidey/report.rb +2 -2
  45. data/lib/bio/appl/targetp/report.rb +4 -20
  46. data/lib/bio/appl/tcoffee.rb +55 -0
  47. data/lib/bio/appl/tmhmm/report.rb +4 -20
  48. data/lib/bio/command.rb +235 -64
  49. data/lib/bio/data/aa.rb +21 -26
  50. data/lib/bio/data/codontable.rb +2 -20
  51. data/lib/bio/data/na.rb +19 -4
  52. data/lib/bio/db.rb +27 -12
  53. data/lib/bio/db/aaindex.rb +2 -20
  54. data/lib/bio/db/embl/common.rb +4 -21
  55. data/lib/bio/db/embl/embl.rb +33 -85
  56. data/lib/bio/db/embl/sptr.rb +612 -302
  57. data/lib/bio/db/embl/swissprot.rb +10 -29
  58. data/lib/bio/db/embl/trembl.rb +10 -29
  59. data/lib/bio/db/embl/uniprot.rb +10 -29
  60. data/lib/bio/db/fantom.rb +15 -20
  61. data/lib/bio/db/fasta.rb +3 -3
  62. data/lib/bio/db/genbank/common.rb +37 -46
  63. data/lib/bio/db/genbank/ddbj.rb +6 -18
  64. data/lib/bio/db/genbank/genbank.rb +47 -186
  65. data/lib/bio/db/genbank/genpept.rb +4 -17
  66. data/lib/bio/db/genbank/refseq.rb +4 -17
  67. data/lib/bio/db/gff.rb +103 -35
  68. data/lib/bio/db/go.rb +4 -20
  69. data/lib/bio/db/kegg/brite.rb +26 -36
  70. data/lib/bio/db/kegg/compound.rb +81 -85
  71. data/lib/bio/db/kegg/drug.rb +98 -0
  72. data/lib/bio/db/kegg/enzyme.rb +133 -110
  73. data/lib/bio/db/kegg/expression.rb +2 -20
  74. data/lib/bio/db/kegg/genes.rb +208 -238
  75. data/lib/bio/db/kegg/genome.rb +164 -285
  76. data/lib/bio/db/kegg/glycan.rb +114 -157
  77. data/lib/bio/db/kegg/keggtab.rb +242 -303
  78. data/lib/bio/db/kegg/kgml.rb +117 -160
  79. data/lib/bio/db/kegg/orthology.rb +112 -0
  80. data/lib/bio/db/kegg/reaction.rb +54 -69
  81. data/lib/bio/db/kegg/taxonomy.rb +331 -0
  82. data/lib/bio/db/lasergene.rb +209 -0
  83. data/lib/bio/db/litdb.rb +3 -27
  84. data/lib/bio/db/medline.rb +228 -249
  85. data/lib/bio/db/nbrf.rb +3 -3
  86. data/lib/bio/db/newick.rb +510 -0
  87. data/lib/bio/db/nexus.rb +1854 -0
  88. data/lib/bio/db/pdb.rb +5 -17
  89. data/lib/bio/db/pdb/atom.rb +2 -18
  90. data/lib/bio/db/pdb/chain.rb +2 -18
  91. data/lib/bio/db/pdb/chemicalcomponent.rb +2 -18
  92. data/lib/bio/db/pdb/model.rb +2 -18
  93. data/lib/bio/db/pdb/pdb.rb +73 -34
  94. data/lib/bio/db/pdb/residue.rb +4 -20
  95. data/lib/bio/db/pdb/utils.rb +2 -18
  96. data/lib/bio/db/prosite.rb +403 -422
  97. data/lib/bio/db/rebase.rb +84 -40
  98. data/lib/bio/db/soft.rb +404 -0
  99. data/lib/bio/db/transfac.rb +5 -17
  100. data/lib/bio/feature.rb +106 -52
  101. data/lib/bio/io/das.rb +32 -42
  102. data/lib/bio/io/dbget.rb +2 -20
  103. data/lib/bio/io/ddbjxml.rb +77 -138
  104. data/lib/bio/io/ebisoap.rb +158 -0
  105. data/lib/bio/io/ensembl.rb +229 -0
  106. data/lib/bio/io/fastacmd.rb +89 -82
  107. data/lib/bio/io/fetch.rb +163 -96
  108. data/lib/bio/io/flatfile.rb +170 -73
  109. data/lib/bio/io/flatfile/bdb.rb +3 -16
  110. data/lib/bio/io/flatfile/index.rb +2 -2
  111. data/lib/bio/io/flatfile/indexer.rb +3 -2
  112. data/lib/bio/io/higet.rb +12 -31
  113. data/lib/bio/io/keggapi.rb +210 -269
  114. data/lib/bio/io/ncbisoap.rb +155 -0
  115. data/lib/bio/io/pubmed.rb +169 -147
  116. data/lib/bio/io/registry.rb +4 -20
  117. data/lib/bio/io/soapwsdl.rb +43 -38
  118. data/lib/bio/io/sql.rb +242 -305
  119. data/lib/bio/location.rb +407 -285
  120. data/lib/bio/map.rb +410 -0
  121. data/lib/bio/pathway.rb +558 -695
  122. data/lib/bio/reference.rb +272 -75
  123. data/lib/bio/sequence.rb +255 -13
  124. data/lib/bio/sequence/aa.rb +71 -10
  125. data/lib/bio/sequence/common.rb +187 -33
  126. data/lib/bio/sequence/compat.rb +59 -4
  127. data/lib/bio/sequence/format.rb +54 -7
  128. data/lib/bio/sequence/generic.rb +3 -3
  129. data/lib/bio/sequence/na.rb +328 -26
  130. data/lib/bio/shell.rb +11 -4
  131. data/lib/bio/shell/core.rb +221 -160
  132. data/lib/bio/shell/demo.rb +18 -15
  133. data/lib/bio/shell/interface.rb +14 -12
  134. data/lib/bio/shell/irb.rb +95 -0
  135. data/lib/bio/shell/object.rb +45 -26
  136. data/lib/bio/shell/plugin/blast.rb +42 -0
  137. data/lib/bio/shell/plugin/codon.rb +22 -14
  138. data/lib/bio/shell/plugin/das.rb +58 -0
  139. data/lib/bio/shell/plugin/emboss.rb +2 -2
  140. data/lib/bio/shell/plugin/entry.rb +22 -11
  141. data/lib/bio/shell/plugin/flatfile.rb +2 -2
  142. data/lib/bio/shell/plugin/keggapi.rb +13 -6
  143. data/lib/bio/shell/plugin/midi.rb +4 -4
  144. data/lib/bio/shell/plugin/obda.rb +2 -2
  145. data/lib/bio/shell/plugin/psort.rb +56 -0
  146. data/lib/bio/shell/plugin/seq.rb +35 -8
  147. data/lib/bio/shell/plugin/soap.rb +87 -0
  148. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/bioruby_generator.rb +29 -0
  149. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_classes.rhtml +4 -0
  150. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_log.rhtml +27 -0
  151. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_methods.rhtml +11 -0
  152. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_modules.rhtml +4 -0
  153. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_variables.rhtml +7 -0
  154. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-bg.gif +0 -0
  155. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-console.png +0 -0
  156. data/lib/bio/shell/rails/{public/images/icon.png → vendor/plugins/generators/bioruby/templates/bioruby-gem.png} +0 -0
  157. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-link.gif +0 -0
  158. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css +369 -0
  159. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.rhtml +47 -0
  160. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_controller.rb +144 -0
  161. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_helper.rb +47 -0
  162. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/commands.rhtml +8 -0
  163. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/history.rhtml +10 -0
  164. data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml +22 -0
  165. data/lib/bio/shell/script.rb +25 -0
  166. data/lib/bio/shell/setup.rb +109 -0
  167. data/lib/bio/shell/web.rb +70 -58
  168. data/lib/bio/tree.rb +850 -0
  169. data/lib/bio/util/color_scheme.rb +84 -107
  170. data/lib/bio/util/color_scheme/buried.rb +5 -24
  171. data/lib/bio/util/color_scheme/helix.rb +5 -24
  172. data/lib/bio/util/color_scheme/hydropathy.rb +5 -24
  173. data/lib/bio/util/color_scheme/nucleotide.rb +5 -24
  174. data/lib/bio/util/color_scheme/strand.rb +5 -24
  175. data/lib/bio/util/color_scheme/taylor.rb +5 -24
  176. data/lib/bio/util/color_scheme/turn.rb +5 -24
  177. data/lib/bio/util/color_scheme/zappo.rb +5 -24
  178. data/lib/bio/util/contingency_table.rb +70 -43
  179. data/lib/bio/util/restriction_enzyme.rb +228 -0
  180. data/lib/bio/util/restriction_enzyme/analysis.rb +249 -0
  181. data/lib/bio/util/restriction_enzyme/analysis_basic.rb +217 -0
  182. data/lib/bio/util/restriction_enzyme/cut_symbol.rb +107 -0
  183. data/lib/bio/util/restriction_enzyme/double_stranded.rb +321 -0
  184. data/lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb +130 -0
  185. data/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb +103 -0
  186. data/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb +38 -0
  187. data/lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb +76 -0
  188. data/lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb +107 -0
  189. data/lib/bio/util/restriction_enzyme/enzymes.yaml +7061 -0
  190. data/lib/bio/util/restriction_enzyme/range/cut_range.rb +24 -0
  191. data/lib/bio/util/restriction_enzyme/range/cut_ranges.rb +47 -0
  192. data/lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb +67 -0
  193. data/lib/bio/util/restriction_enzyme/range/sequence_range.rb +257 -0
  194. data/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb +242 -0
  195. data/lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb +51 -0
  196. data/lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb +41 -0
  197. data/lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb +77 -0
  198. data/lib/bio/util/restriction_enzyme/single_strand.rb +199 -0
  199. data/lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb +135 -0
  200. data/lib/bio/util/restriction_enzyme/single_strand_complement.rb +23 -0
  201. data/lib/bio/util/restriction_enzyme/string_formatting.rb +111 -0
  202. data/lib/bio/util/sirna.rb +4 -22
  203. data/sample/color_scheme_na.rb +4 -12
  204. data/sample/enzymes.rb +78 -0
  205. data/sample/goslim.rb +5 -13
  206. data/sample/psortplot_html.rb +4 -12
  207. data/test/data/blast/2.2.15.blastp.m7 +876 -0
  208. data/test/data/embl/AB090716.embl.rel89 +63 -0
  209. data/test/data/fasta/example1.txt +75 -0
  210. data/test/data/fasta/example2.txt +21 -0
  211. data/test/data/iprscan/merged.raw +32 -0
  212. data/test/data/iprscan/merged.txt +74 -0
  213. data/test/data/soft/GDS100_partial.soft +92 -0
  214. data/test/data/soft/GSE3457_family_partial.soft +874 -0
  215. data/test/functional/bio/io/test_ensembl.rb +103 -0
  216. data/test/functional/bio/io/test_soapwsdl.rb +5 -17
  217. data/test/unit/bio/appl/bl2seq/test_report.rb +2 -2
  218. data/test/unit/bio/appl/blast/test_report.rb +3 -16
  219. data/test/unit/bio/appl/blast/test_xmlparser.rb +4 -16
  220. data/test/unit/bio/appl/genscan/test_report.rb +3 -16
  221. data/test/unit/bio/appl/hmmer/test_report.rb +3 -16
  222. data/test/unit/bio/appl/iprscan/test_report.rb +338 -0
  223. data/test/unit/bio/appl/mafft/test_report.rb +63 -0
  224. data/test/unit/bio/appl/sosui/test_report.rb +3 -16
  225. data/test/unit/bio/appl/targetp/test_report.rb +3 -16
  226. data/test/unit/bio/appl/test_blast.rb +3 -16
  227. data/test/unit/bio/appl/test_fasta.rb +4 -16
  228. data/test/unit/bio/appl/test_pts1.rb +140 -0
  229. data/test/unit/bio/appl/tmhmm/test_report.rb +3 -16
  230. data/test/unit/bio/data/test_aa.rb +4 -17
  231. data/test/unit/bio/data/test_codontable.rb +3 -16
  232. data/test/unit/bio/data/test_na.rb +3 -3
  233. data/test/unit/bio/db/embl/test_common.rb +3 -16
  234. data/test/unit/bio/db/embl/test_embl.rb +3 -16
  235. data/test/unit/bio/db/embl/test_embl_rel89.rb +219 -0
  236. data/test/unit/bio/db/embl/test_sptr.rb +1548 -41
  237. data/test/unit/bio/db/embl/test_uniprot.rb +3 -16
  238. data/test/unit/bio/db/kegg/test_genes.rb +3 -16
  239. data/test/unit/bio/db/pdb/test_pdb.rb +7 -24
  240. data/test/unit/bio/db/test_aaindex.rb +2 -2
  241. data/test/unit/bio/db/test_fasta.rb +3 -16
  242. data/test/unit/bio/db/test_gff.rb +3 -16
  243. data/test/unit/bio/db/test_lasergene.rb +95 -0
  244. data/test/unit/bio/db/test_newick.rb +56 -0
  245. data/test/unit/bio/db/test_nexus.rb +360 -0
  246. data/test/unit/bio/db/test_prosite.rb +5 -18
  247. data/test/unit/bio/db/test_rebase.rb +11 -25
  248. data/test/unit/bio/db/test_soft.rb +138 -0
  249. data/test/unit/bio/io/test_ddbjxml.rb +5 -17
  250. data/test/unit/bio/io/test_ensembl.rb +109 -0
  251. data/test/unit/bio/io/test_fastacmd.rb +3 -16
  252. data/test/unit/bio/io/test_flatfile.rb +237 -0
  253. data/test/unit/bio/io/test_soapwsdl.rb +4 -17
  254. data/test/unit/bio/sequence/test_aa.rb +3 -3
  255. data/test/unit/bio/sequence/test_common.rb +3 -16
  256. data/test/unit/bio/sequence/test_compat.rb +3 -16
  257. data/test/unit/bio/sequence/test_na.rb +29 -3
  258. data/test/unit/bio/shell/plugin/test_seq.rb +8 -8
  259. data/test/unit/bio/test_alignment.rb +16 -27
  260. data/test/unit/bio/test_command.rb +242 -25
  261. data/test/unit/bio/test_db.rb +3 -16
  262. data/test/unit/bio/test_feature.rb +4 -16
  263. data/test/unit/bio/test_location.rb +4 -16
  264. data/test/unit/bio/test_map.rb +230 -0
  265. data/test/unit/bio/test_pathway.rb +4 -16
  266. data/test/unit/bio/test_reference.rb +2 -2
  267. data/test/unit/bio/test_sequence.rb +7 -19
  268. data/test/unit/bio/test_shell.rb +3 -16
  269. data/test/unit/bio/test_tree.rb +593 -0
  270. data/test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb +299 -0
  271. data/test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb +103 -0
  272. data/test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb +240 -0
  273. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb +100 -0
  274. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb +75 -0
  275. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb +73 -0
  276. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb +53 -0
  277. data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb +104 -0
  278. data/test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb +83 -0
  279. data/test/unit/bio/util/restriction_enzyme/test_analysis.rb +246 -0
  280. data/test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb +44 -0
  281. data/test/unit/bio/util/restriction_enzyme/test_double_stranded.rb +115 -0
  282. data/test/unit/bio/util/restriction_enzyme/test_single_strand.rb +147 -0
  283. data/test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb +147 -0
  284. data/test/unit/bio/util/restriction_enzyme/test_string_formatting.rb +60 -0
  285. data/test/unit/bio/util/test_color_scheme.rb +6 -18
  286. data/test/unit/bio/util/test_contingency_table.rb +6 -18
  287. data/test/unit/bio/util/test_restriction_enzyme.rb +42 -0
  288. data/test/unit/bio/util/test_sirna.rb +3 -16
  289. metadata +228 -169
  290. data/doc/BioRuby.rd.ja +0 -225
  291. data/doc/Design.rd.ja +0 -341
  292. data/doc/TODO.rd.ja +0 -138
  293. data/lib/bio/appl/fasta/format6.rb +0 -37
  294. data/lib/bio/db/kegg/cell.rb +0 -88
  295. data/lib/bio/db/kegg/ko.rb +0 -178
  296. data/lib/bio/shell/rails/Rakefile +0 -10
  297. data/lib/bio/shell/rails/app/controllers/application.rb +0 -4
  298. data/lib/bio/shell/rails/app/controllers/shell_controller.rb +0 -94
  299. data/lib/bio/shell/rails/app/helpers/application_helper.rb +0 -3
  300. data/lib/bio/shell/rails/app/models/shell_connection.rb +0 -30
  301. data/lib/bio/shell/rails/app/views/layouts/shell.rhtml +0 -37
  302. data/lib/bio/shell/rails/app/views/shell/history.rhtml +0 -5
  303. data/lib/bio/shell/rails/app/views/shell/index.rhtml +0 -2
  304. data/lib/bio/shell/rails/app/views/shell/show.rhtml +0 -13
  305. data/lib/bio/shell/rails/config/boot.rb +0 -19
  306. data/lib/bio/shell/rails/config/database.yml +0 -85
  307. data/lib/bio/shell/rails/config/environment.rb +0 -53
  308. data/lib/bio/shell/rails/config/environments/development.rb +0 -19
  309. data/lib/bio/shell/rails/config/environments/production.rb +0 -19
  310. data/lib/bio/shell/rails/config/environments/test.rb +0 -19
  311. data/lib/bio/shell/rails/config/routes.rb +0 -19
  312. data/lib/bio/shell/rails/doc/README_FOR_APP +0 -2
  313. data/lib/bio/shell/rails/public/404.html +0 -8
  314. data/lib/bio/shell/rails/public/500.html +0 -8
  315. data/lib/bio/shell/rails/public/dispatch.cgi +0 -10
  316. data/lib/bio/shell/rails/public/dispatch.fcgi +0 -24
  317. data/lib/bio/shell/rails/public/dispatch.rb +0 -10
  318. data/lib/bio/shell/rails/public/favicon.ico +0 -0
  319. data/lib/bio/shell/rails/public/images/rails.png +0 -0
  320. data/lib/bio/shell/rails/public/index.html +0 -277
  321. data/lib/bio/shell/rails/public/javascripts/controls.js +0 -750
  322. data/lib/bio/shell/rails/public/javascripts/dragdrop.js +0 -584
  323. data/lib/bio/shell/rails/public/javascripts/effects.js +0 -854
  324. data/lib/bio/shell/rails/public/javascripts/prototype.js +0 -1785
  325. data/lib/bio/shell/rails/public/robots.txt +0 -1
  326. data/lib/bio/shell/rails/public/stylesheets/main.css +0 -187
  327. data/lib/bio/shell/rails/script/about +0 -3
  328. data/lib/bio/shell/rails/script/breakpointer +0 -3
  329. data/lib/bio/shell/rails/script/console +0 -3
  330. data/lib/bio/shell/rails/script/destroy +0 -3
  331. data/lib/bio/shell/rails/script/generate +0 -3
  332. data/lib/bio/shell/rails/script/performance/benchmarker +0 -3
  333. data/lib/bio/shell/rails/script/performance/profiler +0 -3
  334. data/lib/bio/shell/rails/script/plugin +0 -3
  335. data/lib/bio/shell/rails/script/process/reaper +0 -3
  336. data/lib/bio/shell/rails/script/process/spawner +0 -3
  337. data/lib/bio/shell/rails/script/process/spinner +0 -3
  338. data/lib/bio/shell/rails/script/runner +0 -3
  339. data/lib/bio/shell/rails/script/server +0 -42
  340. data/lib/bio/shell/rails/test/test_helper.rb +0 -28
@@ -0,0 +1,23 @@
1
+ #
2
+ # bio/util/restriction_enzyme/single_strand_complement.rb - Single strand restriction enzyme sequence in complement orientation
3
+ #
4
+ # Author:: Trevor Wennblom <mailto:trevor@corevx.com>
5
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
6
+ # License:: The Ruby License
7
+ #
8
+ # $Id: single_strand_complement.rb,v 1.5 2007/07/16 19:28:48 k Exp $
9
+ #
10
+
11
+ require 'bio/util/restriction_enzyme'
12
+
13
+ module Bio
14
+ class RestrictionEnzyme
15
+
16
+ # A single strand of restriction enzyme sequence pattern with a 3' to 5' orientation.
17
+ #
18
+ class SingleStrandComplement < SingleStrand
19
+ # Orientation of the strand, 3' to 5'
20
+ def orientation; [3, 5]; end
21
+ end # SingleStrandComplement
22
+ end # RestrictionEnzyme
23
+ end # Bio
@@ -0,0 +1,111 @@
1
+ #
2
+ # bio/util/restriction_enzyme/string_formatting.rb - Useful functions for string manipulation
3
+ #
4
+ # Author:: Trevor Wennblom <mailto:trevor@corevx.com>
5
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
6
+ # License:: The Ruby License
7
+ #
8
+ # $Id: string_formatting.rb,v 1.6 2007/07/16 19:28:48 k Exp $
9
+ #
10
+
11
+ require 'bio/util/restriction_enzyme'
12
+
13
+ module Bio
14
+ class RestrictionEnzyme
15
+
16
+ module StringFormatting
17
+ include CutSymbol
18
+ extend CutSymbol
19
+
20
+ # Return the sequence with spacing for alignment. Does not add whitespace
21
+ # around cut symbols.
22
+ #
23
+ # Example:
24
+ # pattern = 'n^ng^arraxt^n'
25
+ # add_spacing( pattern ) # => "n^n g^a r r a x t^n"
26
+ #
27
+ # ---
28
+ # *Arguments*
29
+ # * +seq+: sequence with cut symbols
30
+ # * +cs+: (_optional_) Cut symbol along the string. The reason this is
31
+ # definable outside of CutSymbol is that this is a utility function used
32
+ # to form vertical and horizontal cuts such as:
33
+ #
34
+ # a|t g c
35
+ # +---+
36
+ # t a c|g
37
+ # *Returns*:: +String+ sequence with single character distance between bases
38
+ def add_spacing( seq, cs = cut_symbol )
39
+ str = ''
40
+ flag = false
41
+ seq.each_byte do |c|
42
+ c = c.chr
43
+ if c == cs
44
+ str += c
45
+ flag = false
46
+ elsif flag
47
+ str += ' ' + c
48
+ else
49
+ str += c
50
+ flag = true
51
+ end
52
+ end
53
+ str
54
+ end
55
+
56
+ # Remove extraneous nucleic acid wildcards ('n' padding) from the
57
+ # left and right sides
58
+ #
59
+ # ---
60
+ # *Arguments*
61
+ # * +s+: sequence with extraneous 'n' padding
62
+ # *Returns*:: +String+ sequence without 'n' padding on the sides
63
+ def strip_padding( s )
64
+ if s[0].chr == 'n'
65
+ s =~ %r{(n+)(.+)}
66
+ s = $2
67
+ end
68
+ if s[-1].chr == 'n'
69
+ s =~ %r{(.+?)(n+)$}
70
+ s = $1
71
+ end
72
+ s
73
+ end
74
+
75
+ # Remove extraneous nucleic acid wildcards ('n' padding) from the
76
+ # left and right sides and remove cut symbols
77
+ #
78
+ # ---
79
+ # *Arguments*
80
+ # * +s+: sequence with extraneous 'n' padding and cut symbols
81
+ # *Returns*:: +String+ sequence without 'n' padding on the sides or cut symbols
82
+ def strip_cuts_and_padding( s )
83
+ strip_padding( s.tr(cut_symbol, '') )
84
+ end
85
+
86
+ # Return the 'n' padding on the left side of the strand
87
+ #
88
+ # ---
89
+ # *Arguments*
90
+ # * +s+: sequence with extraneous 'n' padding on the left side of the strand
91
+ # *Returns*:: +String+ the 'n' padding from the left side
92
+ def left_padding( s )
93
+ s =~ %r{^n+}
94
+ ret = $&
95
+ ret ? ret : '' # Don't pass nil values
96
+ end
97
+
98
+ # Return the 'n' padding on the right side of the strand
99
+ #
100
+ # ---
101
+ # *Arguments*
102
+ # * +s+: sequence with extraneous 'n' padding on the right side of the strand
103
+ # *Returns*:: +String+ the 'n' padding from the right side
104
+ def right_padding( s )
105
+ s =~ %r{n+$}
106
+ ret = $&
107
+ ret ? ret : '' # Don't pass nil values
108
+ end
109
+ end # StringFormatting
110
+ end # RestrictionEnzyme
111
+ end # Bio
@@ -3,9 +3,9 @@
3
3
  #
4
4
  # Copyright:: Copyright (C) 2004, 2005
5
5
  # Itoshi NIKAIDO <dritoshi@gmail.com>
6
- # License:: LGPL
6
+ # License:: The Ruby License
7
7
  #
8
- # $Id: sirna.rb,v 1.7 2005/12/27 17:27:38 k Exp $
8
+ # $Id: sirna.rb,v 1.11 2007/04/05 23:35:41 trevor Exp $
9
9
  #
10
10
  # == Bio::SiRNA - Designing siRNA.
11
11
  #
@@ -38,24 +38,6 @@
38
38
  # * Angela Reynolds et al. Rational siRNA design for RNA interference.
39
39
  # Nature Biotech. 2004 22: 326-330.
40
40
  #
41
- #--
42
- #
43
- # This library is free software; you can redistribute it and/or
44
- # modify it under the terms of the GNU Lesser General Public
45
- # License as published by the Free Software Foundation; either
46
- # version 2 of the License, or (at your option) any later version.
47
- #
48
- # This library is distributed in the hope that it will be useful,
49
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
50
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
51
- # Lesser General Public License for more details.
52
- #
53
- # You should have received a copy of the GNU Lesser General Public
54
- # License along with this library; if not, write to the Free Software
55
- # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
56
- #
57
- #++
58
- #
59
41
 
60
42
  require 'bio/sequence'
61
43
 
@@ -96,8 +78,8 @@ module Bio
96
78
  one_third = target.size * 1 / 3
97
79
  start_pos = @target_size - one_third - 1
98
80
  remain_seq = target.subseq(start_pos, @target_size - 2)
99
- gc_number = remain_seq.scan(/[AU]/i).size
100
- return false if gc_number < 5
81
+ au_number = remain_seq.scan(/[AU]/i).size
82
+ return false if au_number < 5
101
83
 
102
84
  return true
103
85
  end
@@ -13,19 +13,11 @@
13
13
  # % ruby color_scheme_na.rb seq.fna > colored-seq-fna.html
14
14
  #
15
15
  #
16
- # Copyright (C) 2005 Mitsuteru C. Nakao <n@bioruby.org>
16
+ # Copyright:: Copyright (C) 2005
17
+ # Mitsuteru C. Nakao <n@bioruby.org>
18
+ # License:: The Ruby License
17
19
  #
18
- # This program is free software; you can redistribute it and/or modify
19
- # it under the terms of the GNU General Public License as published by
20
- # the Free Software Foundation; either version 2 of the License, or
21
- # (at your option) any later version.
22
- #
23
- # This program is distributed in the hope that it will be useful,
24
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
25
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
26
- # GNU General Public License for more details.
27
- #
28
- # $Id: color_scheme_na.rb,v 1.1 2005/10/31 07:39:13 nakao Exp $
20
+ # $Id: color_scheme_na.rb,v 1.3 2007/04/05 23:35:42 trevor Exp $
29
21
  #
30
22
 
31
23
  require 'bio'
@@ -0,0 +1,78 @@
1
+ #!/usr/bin/env ruby
2
+ #
3
+ # enzymes.rb - cut input file using enzyme on command line
4
+ #
5
+ # Copyright (C) 2006 Pjotr Prins <p@bioruby.org> and Trevor Wennblom <trevor@corevx.com>
6
+ #
7
+ # This program is free software; you can redistribute it and/or modify
8
+ # it under the terms of the GNU General Public License as published by
9
+ # the Free Software Foundation; either version 2 of the License, or
10
+ # (at your option) any later version.
11
+ #
12
+ # This program is distributed in the hope that it will be useful,
13
+ # but WITHOUT ANY WARRANTY; without even the implied warranty of
14
+ # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15
+ # GNU General Public License for more details.
16
+ #
17
+ # $Id: enzymes.rb,v 1.1 2006/03/03 15:31:06 pjotr Exp $
18
+ #
19
+
20
+ require 'bio/io/flatfile'
21
+ require 'bio/util/restriction_enzyme'
22
+
23
+ include Bio
24
+
25
+ usage = <<USAGE
26
+
27
+ Usage: enzymes.rb enzyme1 [enzyme2] infiles
28
+
29
+ Examples:
30
+
31
+ Output the primary sequences cut using both BstYI and MseI:
32
+
33
+ ./enzymes.rb BstYI MseI *.seq
34
+
35
+ or using the actual formats
36
+
37
+ ./enzymes.rb "r^gatcy" "t^taa" *.seq
38
+
39
+ USAGE
40
+
41
+ if ARGV.size < 2
42
+ print usage
43
+ exit 1
44
+ end
45
+
46
+ enzyme1 = ARGV.shift
47
+ # ---- Fetch enzyme2 if it is not a file
48
+ arg2 = ARGV[0]
49
+ if arg2 and !File.exist?(arg2)
50
+ enzyme2 = ARGV.shift
51
+ end
52
+
53
+ re1 = Bio::RestrictionEnzyme::DoubleStranded.new(enzyme1)
54
+ puts "Enzyme #{enzyme1}: " + re1.primary.with_cut_symbols # e.g. r^gatcy
55
+ if (enzyme2)
56
+ re2 = Bio::RestrictionEnzyme::DoubleStranded.new(enzyme2)
57
+ puts "Enzyme #{enzyme2}: " + re2.primary.with_cut_symbols # e.g. t^taa
58
+ end
59
+
60
+ ARGV.each do | fn |
61
+ ff = Bio::FlatFile.auto(fn)
62
+ ff.each_entry do |entry|
63
+ seq = Bio::Sequence::NA.new(entry.seq)
64
+ # puts seq.inspect
65
+ seq.cut_with_enzyme(enzyme1).each do | frag1 |
66
+ frag = frag1
67
+ if enzyme2
68
+ seq = Bio::Sequence::NA.new(frag1.primary)
69
+ frags2 = seq.cut_with_enzyme(enzyme2)
70
+ next if frags2.size == 0
71
+ frag = frags2.shift # pick up first fragment
72
+ end
73
+ print '> '+entry.definition+"\n"
74
+ print frag.primary,"\n"
75
+ end
76
+ end
77
+ end
78
+
@@ -10,24 +10,16 @@
10
10
  # % R < mgi.R
11
11
  # % gv mgi.pdf
12
12
  #
13
- # Copyright (C) 2003 Mitsuteru C. Nakao <n@bioruby.org>
13
+ # Copyright:: Copyright (C) 2003
14
+ # Mitsuteru C. Nakao <n@bioruby.org>
15
+ # License:: The Ruby License
14
16
  #
15
- # This program is free software; you can redistribute it and/or modify
16
- # it under the terms of the GNU General Public License as published by
17
- # the Free Software Foundation; either version 2 of the License, or
18
- # (at your option) any later version.
19
- #
20
- # This program is distributed in the hope that it will be useful,
21
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
22
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
23
- # GNU General Public License for more details.
24
- #
25
- # $Id: goslim.rb,v 1.3 2003/05/13 10:45:42 n Exp $
17
+ # $Id: goslim.rb,v 1.5 2007/04/05 23:35:42 trevor Exp $
26
18
  #
27
19
 
28
20
 
29
21
 
30
- SCRIPT_VERSION = '$Id: goslim.rb,v 1.3 2003/05/13 10:45:42 n Exp $'
22
+ SCRIPT_VERSION = '$Id: goslim.rb,v 1.5 2007/04/05 23:35:42 trevor Exp $'
31
23
 
32
24
  USAGE = "${__FILE__} - GO slim
33
25
  Usage:
@@ -11,19 +11,11 @@
11
11
  # % ruby psortplot_html.rb path:eco00010
12
12
  # % cat eco00010_psort2.html
13
13
  #
14
- # Copyright (C) 2005 Mitsuteru C. Nakao <n@bioruby.org>
14
+ # Copyright:: Copyright (C) 2005
15
+ # Mitsuteru C. Nakao <n@bioruby.org>
16
+ # License:: The Ruby License
15
17
  #
16
- # This program is free software; you can redistribute it and/or modify
17
- # it under the terms of the GNU General Public License as published by
18
- # the Free Software Foundation; either version 2 of the License, or
19
- # (at your option) any later version.
20
- #
21
- # This program is distributed in the hope that it will be useful,
22
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
23
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
24
- # GNU General Public License for more details.
25
- #
26
- # $Id: psortplot_html.rb,v 1.1 2005/10/12 02:10:11 nakao Exp $
18
+ # $Id: psortplot_html.rb,v 1.3 2007/04/05 23:35:42 trevor Exp $
27
19
  #
28
20
 
29
21
  require 'bio'
@@ -0,0 +1,876 @@
1
+ <?xml version="1.0"?>
2
+ <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3
+ <BlastOutput>
4
+ <BlastOutput_program>blastp</BlastOutput_program>
5
+ <BlastOutput_version>blastp 2.2.15 [Oct-15-2006]</BlastOutput_version>
6
+ <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~&quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7
+ <BlastOutput_db>p53_barbu.fasta</BlastOutput_db>
8
+ <BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID>
9
+ <BlastOutput_query-def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</BlastOutput_query-def>
10
+ <BlastOutput_query-len>393</BlastOutput_query-len>
11
+ <BlastOutput_param>
12
+ <Parameters>
13
+ <Parameters_matrix>BLOSUM62</Parameters_matrix>
14
+ <Parameters_expect>10</Parameters_expect>
15
+ <Parameters_gap-open>11</Parameters_gap-open>
16
+ <Parameters_gap-extend>1</Parameters_gap-extend>
17
+ <Parameters_filter>F</Parameters_filter>
18
+ </Parameters>
19
+ </BlastOutput_param>
20
+ <BlastOutput_iterations>
21
+ <Iteration>
22
+ <Iteration_iter-num>1</Iteration_iter-num>
23
+ <Iteration_query-ID>lcl|1_0</Iteration_query-ID>
24
+ <Iteration_query-def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</Iteration_query-def>
25
+ <Iteration_query-len>393</Iteration_query-len>
26
+ <Iteration_hits>
27
+ <Hit>
28
+ <Hit_num>1</Hit_num>
29
+ <Hit_id>gnl|BL_ORD_ID|13</Hit_id>
30
+ <Hit_def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</Hit_def>
31
+ <Hit_accession>13</Hit_accession>
32
+ <Hit_len>393</Hit_len>
33
+ <Hit_hsps>
34
+ <Hsp>
35
+ <Hsp_num>1</Hsp_num>
36
+ <Hsp_bit-score>755.362</Hsp_bit-score>
37
+ <Hsp_score>1949</Hsp_score>
38
+ <Hsp_evalue>0</Hsp_evalue>
39
+ <Hsp_query-from>1</Hsp_query-from>
40
+ <Hsp_query-to>393</Hsp_query-to>
41
+ <Hsp_hit-from>1</Hsp_hit-from>
42
+ <Hsp_hit-to>393</Hsp_hit-to>
43
+ <Hsp_query-frame>1</Hsp_query-frame>
44
+ <Hsp_hit-frame>1</Hsp_hit-frame>
45
+ <Hsp_identity>366</Hsp_identity>
46
+ <Hsp_positive>366</Hsp_positive>
47
+ <Hsp_align-len>393</Hsp_align-len>
48
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
49
+ <Hsp_hseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_hseq>
50
+ <Hsp_midline>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDE SWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_midline>
51
+ </Hsp>
52
+ </Hit_hsps>
53
+ </Hit>
54
+ <Hit>
55
+ <Hit_num>2</Hit_num>
56
+ <Hit_id>gnl|BL_ORD_ID|6</Hit_id>
57
+ <Hit_def>P53_CERAE P13481 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
58
+ <Hit_accession>6</Hit_accession>
59
+ <Hit_len>393</Hit_len>
60
+ <Hit_hsps>
61
+ <Hsp>
62
+ <Hsp_num>1</Hsp_num>
63
+ <Hsp_bit-score>730.324</Hsp_bit-score>
64
+ <Hsp_score>1884</Hsp_score>
65
+ <Hsp_evalue>0</Hsp_evalue>
66
+ <Hsp_query-from>1</Hsp_query-from>
67
+ <Hsp_query-to>393</Hsp_query-to>
68
+ <Hsp_hit-from>1</Hsp_hit-from>
69
+ <Hsp_hit-to>393</Hsp_hit-to>
70
+ <Hsp_query-frame>1</Hsp_query-frame>
71
+ <Hsp_hit-frame>1</Hsp_hit-frame>
72
+ <Hsp_identity>353</Hsp_identity>
73
+ <Hsp_positive>357</Hsp_positive>
74
+ <Hsp_align-len>393</Hsp_align-len>
75
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
76
+ <Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPHMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
77
+ <Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP HELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
78
+ </Hsp>
79
+ </Hit_hsps>
80
+ </Hit>
81
+ <Hit>
82
+ <Hit_num>3</Hit_num>
83
+ <Hit_id>gnl|BL_ORD_ID|17</Hit_id>
84
+ <Hit_def>P53_MACMU P56424 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
85
+ <Hit_accession>17</Hit_accession>
86
+ <Hit_len>393</Hit_len>
87
+ <Hit_hsps>
88
+ <Hsp>
89
+ <Hsp_num>1</Hsp_num>
90
+ <Hsp_bit-score>729.169</Hsp_bit-score>
91
+ <Hsp_score>1881</Hsp_score>
92
+ <Hsp_evalue>0</Hsp_evalue>
93
+ <Hsp_query-from>1</Hsp_query-from>
94
+ <Hsp_query-to>393</Hsp_query-to>
95
+ <Hsp_hit-from>1</Hsp_hit-from>
96
+ <Hsp_hit-to>393</Hsp_hit-to>
97
+ <Hsp_query-frame>1</Hsp_query-frame>
98
+ <Hsp_hit-frame>1</Hsp_hit-frame>
99
+ <Hsp_identity>352</Hsp_identity>
100
+ <Hsp_positive>357</Hsp_positive>
101
+ <Hsp_align-len>393</Hsp_align-len>
102
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
103
+ <Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
104
+ <Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
105
+ </Hsp>
106
+ </Hit_hsps>
107
+ </Hit>
108
+ <Hit>
109
+ <Hit_num>4</Hit_num>
110
+ <Hit_id>gnl|BL_ORD_ID|16</Hit_id>
111
+ <Hit_def>P53_MACFU P61260 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
112
+ <Hit_accession>16</Hit_accession>
113
+ <Hit_len>393</Hit_len>
114
+ <Hit_hsps>
115
+ <Hsp>
116
+ <Hsp_num>1</Hsp_num>
117
+ <Hsp_bit-score>729.169</Hsp_bit-score>
118
+ <Hsp_score>1881</Hsp_score>
119
+ <Hsp_evalue>0</Hsp_evalue>
120
+ <Hsp_query-from>1</Hsp_query-from>
121
+ <Hsp_query-to>393</Hsp_query-to>
122
+ <Hsp_hit-from>1</Hsp_hit-from>
123
+ <Hsp_hit-to>393</Hsp_hit-to>
124
+ <Hsp_query-frame>1</Hsp_query-frame>
125
+ <Hsp_hit-frame>1</Hsp_hit-frame>
126
+ <Hsp_identity>352</Hsp_identity>
127
+ <Hsp_positive>357</Hsp_positive>
128
+ <Hsp_align-len>393</Hsp_align-len>
129
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
130
+ <Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
131
+ <Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
132
+ </Hsp>
133
+ </Hit_hsps>
134
+ </Hit>
135
+ <Hit>
136
+ <Hit_num>5</Hit_num>
137
+ <Hit_id>gnl|BL_ORD_ID|15</Hit_id>
138
+ <Hit_def>P53_MACFA P56423 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
139
+ <Hit_accession>15</Hit_accession>
140
+ <Hit_len>393</Hit_len>
141
+ <Hit_hsps>
142
+ <Hsp>
143
+ <Hsp_num>1</Hsp_num>
144
+ <Hsp_bit-score>729.169</Hsp_bit-score>
145
+ <Hsp_score>1881</Hsp_score>
146
+ <Hsp_evalue>0</Hsp_evalue>
147
+ <Hsp_query-from>1</Hsp_query-from>
148
+ <Hsp_query-to>393</Hsp_query-to>
149
+ <Hsp_hit-from>1</Hsp_hit-from>
150
+ <Hsp_hit-to>393</Hsp_hit-to>
151
+ <Hsp_query-frame>1</Hsp_query-frame>
152
+ <Hsp_hit-frame>1</Hsp_hit-frame>
153
+ <Hsp_identity>352</Hsp_identity>
154
+ <Hsp_positive>357</Hsp_positive>
155
+ <Hsp_align-len>393</Hsp_align-len>
156
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
157
+ <Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
158
+ <Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
159
+ </Hsp>
160
+ </Hit_hsps>
161
+ </Hit>
162
+ <Hit>
163
+ <Hit_num>6</Hit_num>
164
+ <Hit_id>gnl|BL_ORD_ID|18</Hit_id>
165
+ <Hit_def>P53_MARMO O36006 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
166
+ <Hit_accession>18</Hit_accession>
167
+ <Hit_len>391</Hit_len>
168
+ <Hit_hsps>
169
+ <Hsp>
170
+ <Hsp_num>1</Hsp_num>
171
+ <Hsp_bit-score>659.448</Hsp_bit-score>
172
+ <Hsp_score>1700</Hsp_score>
173
+ <Hsp_evalue>0</Hsp_evalue>
174
+ <Hsp_query-from>1</Hsp_query-from>
175
+ <Hsp_query-to>393</Hsp_query-to>
176
+ <Hsp_hit-from>1</Hsp_hit-from>
177
+ <Hsp_hit-to>391</Hsp_hit-to>
178
+ <Hsp_query-frame>1</Hsp_query-frame>
179
+ <Hsp_hit-frame>1</Hsp_hit-frame>
180
+ <Hsp_identity>323</Hsp_identity>
181
+ <Hsp_positive>338</Hsp_positive>
182
+ <Hsp_gaps>2</Hsp_gaps>
183
+ <Hsp_align-len>393</Hsp_align-len>
184
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
185
+ <Hsp_hseq>MEEAQSDLSIEPPLSQETFSDLWNLLPENNVLSPVLSPPMDDLLLSSEDVENWF--DKGPDEALQMSAAPAPKAPTPAASTLAAPSPATSWPLSSSVPSQNTYPGVYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSECTTIHYNYMCNSSCMGGMNRRPILTIITLEGSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKRGEPCPEPPPRSTKRALPNGTSSSPQPKKKPLDGEYFTLKIRGRARFEMFQELNEALELKDAQAEKEPGESRPHPSYLKSKKGQSTSRHKKIIFKREGPDSD</Hsp_hseq>
186
+ <Hsp_midline>MEE QSD S+EPPLSQETFSDLW LLPENNVLSP+ S MDDL+LS +D+E WF D GPDE SWPLSSSVPSQ TY G YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGS+CTTIHYNYMCNSSCMGGMNRRPILTIITLE SSGNLLGRNSFEVRVCACPGRDRRTEEEN RK+GEP E PP STKRALPN TSSSPQPKKKPLDGEYFTL+IRGR RFEMF+ELNEALELKDAQA KEPG SR H S+LKSKKGQSTSRHKK++FK EGPDSD</Hsp_midline>
187
+ </Hsp>
188
+ </Hit_hsps>
189
+ </Hit>
190
+ <Hit>
191
+ <Hit_num>7</Hit_num>
192
+ <Hit_id>gnl|BL_ORD_ID|25</Hit_id>
193
+ <Hit_def>P53_RABIT Q95330 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
194
+ <Hit_accession>25</Hit_accession>
195
+ <Hit_len>391</Hit_len>
196
+ <Hit_hsps>
197
+ <Hsp>
198
+ <Hsp_num>1</Hsp_num>
199
+ <Hsp_bit-score>648.277</Hsp_bit-score>
200
+ <Hsp_score>1671</Hsp_score>
201
+ <Hsp_evalue>0</Hsp_evalue>
202
+ <Hsp_query-from>1</Hsp_query-from>
203
+ <Hsp_query-to>393</Hsp_query-to>
204
+ <Hsp_hit-from>1</Hsp_hit-from>
205
+ <Hsp_hit-to>391</Hsp_hit-to>
206
+ <Hsp_query-frame>1</Hsp_query-frame>
207
+ <Hsp_hit-frame>1</Hsp_hit-frame>
208
+ <Hsp_identity>322</Hsp_identity>
209
+ <Hsp_positive>338</Hsp_positive>
210
+ <Hsp_gaps>4</Hsp_gaps>
211
+ <Hsp_align-len>394</Hsp_align-len>
212
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTS-SSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
213
+ <Hsp_hseq>MEESQSDLSLEPPLSQETFSDLWKLLPENNLLTTSLNPPVDDL-LSAEDVANWLNEDP--EEGLRVPAAPAPEAPAPAAPALAAPAPATSWPLSSSVPSQKTYHGNYGFRLGFLHSGTAKSVTCTYSPCLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPELPPGSSKRALPTTTTDSSPQTKKKPLDGEYFILKIRGRERFEMFRELNEALELKDAQAEKEPGGSRAHSSYLKAKKGQSTSRHKKPMFKREGPDSD</Hsp_hseq>
214
+ <Hsp_midline>MEE QSD S+EPPLSQETFSDLWKLLPENN+L+ + +DDL LS +D+ W EDP +E SWPLSSSVPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP ELPPGS+KRALP T+ SSPQ KKKPLDGEYF L+IRGRERFEMFRELNEALELKDAQA KEPGGSRAHSS+LK+KKGQSTSRHKK MFK EGPDSD</Hsp_midline>
215
+ </Hsp>
216
+ </Hit_hsps>
217
+ </Hit>
218
+ <Hit>
219
+ <Hit_num>8</Hit_num>
220
+ <Hit_id>gnl|BL_ORD_ID|9</Hit_id>
221
+ <Hit_def>P53_DELLE Q8SPZ3 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
222
+ <Hit_accession>9</Hit_accession>
223
+ <Hit_len>387</Hit_len>
224
+ <Hit_hsps>
225
+ <Hsp>
226
+ <Hsp_num>1</Hsp_num>
227
+ <Hsp_bit-score>635.95</Hsp_bit-score>
228
+ <Hsp_score>1639</Hsp_score>
229
+ <Hsp_evalue>0</Hsp_evalue>
230
+ <Hsp_query-from>1</Hsp_query-from>
231
+ <Hsp_query-to>393</Hsp_query-to>
232
+ <Hsp_hit-from>1</Hsp_hit-from>
233
+ <Hsp_hit-to>387</Hsp_hit-to>
234
+ <Hsp_query-frame>1</Hsp_query-frame>
235
+ <Hsp_hit-frame>1</Hsp_hit-frame>
236
+ <Hsp_identity>318</Hsp_identity>
237
+ <Hsp_positive>332</Hsp_positive>
238
+ <Hsp_gaps>8</Hsp_gaps>
239
+ <Hsp_align-len>394</Hsp_align-len>
240
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
241
+ <Hsp_hseq>MEESQAELGVEPPLSQETFSDLWKLLPENNLLSSELSPAVDDLLLSPEDVANWL--DERPDEAPQMPEPPAPAAPTPAAPAPAT-----SWPLSSFVPSQKTYPGSYGFHLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERCSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSNGNLLGRNSFEVRVCACPGRDRRTEEENFHKKGQSCPELPTGSAKRALPTGTSSSPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGESRAHSSHLKSKKGQSPSRHKKLMFKREGPDSD</Hsp_hseq>
242
+ <Hsp_midline>MEE Q++ VEPPLSQETFSDLWKLLPENN+LS S A+DDL+LSP+D+ W D PDE SWPLSS VPSQKTY GSYGF LGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHERCSD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDS+GNLLGRNSFEVRVCACPGRDRRTEEEN KKG+ ELP GS KRALP TSSSP KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG SRAHSSHLKSKKGQS SRHKKLMFK EGPDSD</Hsp_midline>
243
+ </Hsp>
244
+ </Hit_hsps>
245
+ </Hit>
246
+ <Hit>
247
+ <Hit_num>9</Hit_num>
248
+ <Hit_id>gnl|BL_ORD_ID|23</Hit_id>
249
+ <Hit_def>P53_PIG Q9TUB2 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
250
+ <Hit_accession>23</Hit_accession>
251
+ <Hit_len>386</Hit_len>
252
+ <Hit_hsps>
253
+ <Hsp>
254
+ <Hsp_num>1</Hsp_num>
255
+ <Hsp_bit-score>607.446</Hsp_bit-score>
256
+ <Hsp_score>1565</Hsp_score>
257
+ <Hsp_evalue>4.50259e-177</Hsp_evalue>
258
+ <Hsp_query-from>1</Hsp_query-from>
259
+ <Hsp_query-to>393</Hsp_query-to>
260
+ <Hsp_hit-from>1</Hsp_hit-from>
261
+ <Hsp_hit-to>386</Hsp_hit-to>
262
+ <Hsp_query-frame>1</Hsp_query-frame>
263
+ <Hsp_hit-frame>1</Hsp_hit-frame>
264
+ <Hsp_identity>308</Hsp_identity>
265
+ <Hsp_positive>326</Hsp_positive>
266
+ <Hsp_gaps>11</Hsp_gaps>
267
+ <Hsp_align-len>395</Hsp_align-len>
268
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSP-LPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
269
+ <Hsp_hseq>MEESQSELGVEPPLSQETFSDLWKLLPENNLLSSELSLAAVNDLLLSP--VTNWLDENPDDASRVPAPPAATAPAPAAPAPAT-------SWPLSSFVPSQKTYPGSYDFRLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDASGNLLGRNSFEVRVCACPGRDRRTEEENFLKKGQSCPEPPPGSTKRALPTSTSSSPVQKKKPLDGEYFTLQIRGRERFEMFRELNDALELKDAQTARESGENRAHSSHLKSKKGQSPSRHKKPMFKREGPDSD</Hsp_hseq>
270
+ <Hsp_midline>MEE QS+ VEPPLSQETFSDLWKLLPENN+LS L A++DL+LSP + W E+P SWPLSS VPSQKTY GSY FRLGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLED+SGNLLGRNSFEVRVCACPGRDRRTEEEN KKG+ E PPGSTKRALP +TSSSP KKKPLDGEYFTLQIRGRERFEMFRELN+ALELKDAQ +E G +RAHSSHLKSKKGQS SRHKK MFK EGPDSD</Hsp_midline>
271
+ </Hsp>
272
+ </Hit_hsps>
273
+ </Hit>
274
+ <Hit>
275
+ <Hit_num>10</Hit_num>
276
+ <Hit_id>gnl|BL_ORD_ID|4</Hit_id>
277
+ <Hit_def>P53_CANFA Q29537 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
278
+ <Hit_accession>4</Hit_accession>
279
+ <Hit_len>381</Hit_len>
280
+ <Hit_hsps>
281
+ <Hsp>
282
+ <Hsp_num>1</Hsp_num>
283
+ <Hsp_bit-score>604.749</Hsp_bit-score>
284
+ <Hsp_score>1558</Hsp_score>
285
+ <Hsp_evalue>2.91849e-176</Hsp_evalue>
286
+ <Hsp_query-from>1</Hsp_query-from>
287
+ <Hsp_query-to>393</Hsp_query-to>
288
+ <Hsp_hit-from>1</Hsp_hit-from>
289
+ <Hsp_hit-to>381</Hsp_hit-to>
290
+ <Hsp_query-frame>1</Hsp_query-frame>
291
+ <Hsp_hit-frame>1</Hsp_hit-frame>
292
+ <Hsp_identity>304</Hsp_identity>
293
+ <Hsp_positive>325</Hsp_positive>
294
+ <Hsp_gaps>14</Hsp_gaps>
295
+ <Hsp_align-len>394</Hsp_align-len>
296
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
297
+ <Hsp_hseq>MEESQSELNIDPPLSQETFSELWNLLPENNVLSSELCPAVDELLL-PESVVNWLDEDSDD------------APRMPATSAPTAPGPAPSWPLSSSVPSPKTYPGTYGFRLGFLHSGTAKSVTWTYSPLLNKLFCQLAKTCPVQLWVSSPPPPNTCVRAMAIYKKSEFVTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAKYLDDRNTFRHSVVVPYEPPEVGSDYTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNVLGRNSFEVRVCACPGRDRRTEEENFHKKGEPCPEPPPGSTKRALPPSTSSSPPQKKKPLDGEYFTLQIRGRERYEMFRNLNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKLMFKREGLDSD</Hsp_hseq>
298
+ <Hsp_midline>MEE QS+ +++PPLSQETFS+LW LLPENNVLS A+D+L+L P+ + W ED SWPLSSSVPS KTY G+YGFRLGFLHSGTAKSVT TYSP LNK+FCQLAKTCPVQLWV S PPP T VRAMAIYK+S+ +TEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR +YLDDRNTFRHSVVVPYEPPEVGSD TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGN+LGRNSFEVRVCACPGRDRRTEEEN KKGEP E PPGSTKRALP +TSSSP KKKPLDGEYFTLQIRGRER+EMFR LNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKKLMFK EG DSD</Hsp_midline>
299
+ </Hsp>
300
+ </Hit_hsps>
301
+ </Hit>
302
+ <Hit>
303
+ <Hit_num>11</Hit_num>
304
+ <Hit_id>gnl|BL_ORD_ID|11</Hit_id>
305
+ <Hit_def>P53_FELCA P41685 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
306
+ <Hit_accession>11</Hit_accession>
307
+ <Hit_len>386</Hit_len>
308
+ <Hit_hsps>
309
+ <Hsp>
310
+ <Hsp_num>1</Hsp_num>
311
+ <Hsp_bit-score>602.823</Hsp_bit-score>
312
+ <Hsp_score>1553</Hsp_score>
313
+ <Hsp_evalue>1.10903e-175</Hsp_evalue>
314
+ <Hsp_query-from>1</Hsp_query-from>
315
+ <Hsp_query-to>393</Hsp_query-to>
316
+ <Hsp_hit-from>1</Hsp_hit-from>
317
+ <Hsp_hit-to>386</Hsp_hit-to>
318
+ <Hsp_query-frame>1</Hsp_query-frame>
319
+ <Hsp_hit-frame>1</Hsp_hit-frame>
320
+ <Hsp_identity>303</Hsp_identity>
321
+ <Hsp_positive>325</Hsp_positive>
322
+ <Hsp_gaps>9</Hsp_gaps>
323
+ <Hsp_align-len>394</Hsp_align-len>
324
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
325
+ <Hsp_hseq>MQEPPLELTIEPPLSQETFSELWNLLPENNVLSSELSSAMNELPLS-EDVANWL--DEAPDDASGMSAVPAPAAPAPATPAPAI-----SWPLSSFVPSQKTYPGAYGFHLGFLQSGTAKSVTCTYSPPLNKLFCQLAKTCPVQLWVRSPPPPGTCVRAMAIYKKSEFMTEVVRRCPHHERCPDSSDGLAPPQHLIRVEGNLHAKYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPIITIITLEDSNGKLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPEPPPGSTKRALPPSTSSTPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKPMLKREGLDSD</Hsp_hseq>
326
+ <Hsp_midline>M+EP + ++EPPLSQETFS+LW LLPENNVLS S AM++L LS +D+ W D PD+ SWPLSS VPSQKTY G+YGF LGFL SGTAKSVTCTYSP LNK+FCQLAKTCPVQLWV S PPPGT VRAMAIYK+S+ MTEVVRRCPHHERC DS DGLAPPQHLIRVEGNL +YLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPI+TIITLEDS+G LLGRNSFEVRVCACPGRDRRTEEEN RKKGEP E PPGSTKRALP +TSS+P KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKK M K EG DSD</Hsp_midline>
327
+ </Hsp>
328
+ </Hit_hsps>
329
+ </Hit>
330
+ <Hit>
331
+ <Hit_num>12</Hit_num>
332
+ <Hit_id>gnl|BL_ORD_ID|5</Hit_id>
333
+ <Hit_def>P53_CAVPO Q9WUR6 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
334
+ <Hit_accession>5</Hit_accession>
335
+ <Hit_len>391</Hit_len>
336
+ <Hit_hsps>
337
+ <Hsp>
338
+ <Hsp_num>1</Hsp_num>
339
+ <Hsp_bit-score>600.512</Hsp_bit-score>
340
+ <Hsp_score>1547</Hsp_score>
341
+ <Hsp_evalue>5.50404e-175</Hsp_evalue>
342
+ <Hsp_query-from>1</Hsp_query-from>
343
+ <Hsp_query-to>393</Hsp_query-to>
344
+ <Hsp_hit-from>1</Hsp_hit-from>
345
+ <Hsp_hit-to>391</Hsp_hit-to>
346
+ <Hsp_query-frame>1</Hsp_query-frame>
347
+ <Hsp_hit-frame>1</Hsp_hit-frame>
348
+ <Hsp_identity>297</Hsp_identity>
349
+ <Hsp_positive>319</Hsp_positive>
350
+ <Hsp_gaps>2</Hsp_gaps>
351
+ <Hsp_align-len>393</Hsp_align-len>
352
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
353
+ <Hsp_hseq>MEEPHSDLSIEPPLSQETFSDLWKLLPENNVLSDSLSPPMDHLLLSPEEVASWLGENPDGD--GHVSAAPVSEAPTSAGPALVAPAPATSWPLSSSVPSHKPYRGSYGFEVHFLKSGTAKSVTCTYSPGLNKLFCQLAKTCPVQVWVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLHAEYVDDRTTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGKLLGRDSFEVRVCACPGRDRRTEEENFRKKGGLCPEPTPGNIKRALPTSTSSSPQPKKKPLDAEYFTLKIRGRKNFEILREINEALEFKDAQTEKEPGESRPHSSYPKSKKGQSTSCHKKLMFKREGLDSD</Hsp_hseq>
354
+ <Hsp_midline>MEEP SD S+EPPLSQETFSDLWKLLPENNVLS S MD L+LSP+++ W E+P D SWPLSSSVPS K Y+GSYGF + FL SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNL EY+DDR TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSG LLGR+SFEVRVCACPGRDRRTEEEN RKKG E PG+ KRALP +TSSSPQPKKKPLD EYFTL+IRGR+ FE+ RE+NEALE KDAQ KEPG SR HSS+ KSKKGQSTS HKKLMFK EG DSD</Hsp_midline>
355
+ </Hsp>
356
+ </Hit_hsps>
357
+ </Hit>
358
+ <Hit>
359
+ <Hit_num>13</Hit_num>
360
+ <Hit_id>gnl|BL_ORD_ID|27</Hit_id>
361
+ <Hit_def>P53_SHEEP P51664 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
362
+ <Hit_accession>27</Hit_accession>
363
+ <Hit_len>382</Hit_len>
364
+ <Hit_hsps>
365
+ <Hsp>
366
+ <Hsp_num>1</Hsp_num>
367
+ <Hsp_bit-score>595.89</Hsp_bit-score>
368
+ <Hsp_score>1535</Hsp_score>
369
+ <Hsp_evalue>1.35569e-173</Hsp_evalue>
370
+ <Hsp_query-from>1</Hsp_query-from>
371
+ <Hsp_query-to>393</Hsp_query-to>
372
+ <Hsp_hit-from>1</Hsp_hit-from>
373
+ <Hsp_hit-to>382</Hsp_hit-to>
374
+ <Hsp_query-frame>1</Hsp_query-frame>
375
+ <Hsp_hit-frame>1</Hsp_hit-frame>
376
+ <Hsp_identity>299</Hsp_identity>
377
+ <Hsp_positive>320</Hsp_positive>
378
+ <Hsp_gaps>13</Hsp_gaps>
379
+ <Hsp_align-len>394</Hsp_align-len>
380
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
381
+ <Hsp_hseq>MEESQAELGVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDLLPYSEDVVTWLDECPNE------------APQMPEPPAQAALAPATSWPLSSFVPSQKTYPGNYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRSPHHERSSDYSDGLAPPQHLIRVEGNLRAEYFDDRNTFRHSVVVPYESPEIESECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSRGNLLGRSSFEVRVCACPGRDRRTEEENFRKKGQSCPEPPPGSTKRALPSSTSSSPQQKKKPLDGEYFTLQIRGRKRFEMFRELNEALELMDAQAGREPGESRAHSSHLKSKKGPSPSCHKKPMLKREGPDSD</Hsp_hseq>
382
+ <Hsp_midline>MEE Q++ VEPPLSQETFSDLW LLPENN+LS S +DDL+ +D+ W E P SWPLSS VPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRR PHHER SD SDGLAPPQHLIRVEGNLR EY DDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGR+SFEVRVCACPGRDRRTEEEN RKKG+ E PPGSTKRALP++TSSSPQ KKKPLDGEYFTLQIRGR+RFEMFRELNEALEL DAQAG+EPG SRAHSSHLKSKKG S S HKK M K EGPDSD</Hsp_midline>
383
+ </Hsp>
384
+ </Hit_hsps>
385
+ </Hit>
386
+ <Hit>
387
+ <Hit_num>14</Hit_num>
388
+ <Hit_id>gnl|BL_ORD_ID|19</Hit_id>
389
+ <Hit_def>P53_MESAU Q00366 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
390
+ <Hit_accession>19</Hit_accession>
391
+ <Hit_len>396</Hit_len>
392
+ <Hit_hsps>
393
+ <Hsp>
394
+ <Hsp_num>1</Hsp_num>
395
+ <Hsp_bit-score>594.349</Hsp_bit-score>
396
+ <Hsp_score>1531</Hsp_score>
397
+ <Hsp_evalue>3.94446e-173</Hsp_evalue>
398
+ <Hsp_query-from>1</Hsp_query-from>
399
+ <Hsp_query-to>393</Hsp_query-to>
400
+ <Hsp_hit-from>1</Hsp_hit-from>
401
+ <Hsp_hit-to>396</Hsp_hit-to>
402
+ <Hsp_query-frame>1</Hsp_query-frame>
403
+ <Hsp_hit-frame>1</Hsp_hit-frame>
404
+ <Hsp_identity>300</Hsp_identity>
405
+ <Hsp_positive>324</Hsp_positive>
406
+ <Hsp_gaps>7</Hsp_gaps>
407
+ <Hsp_align-len>398</Hsp_align-len>
408
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQ-AMDDLMLSPDDIEQWFTEDPGP----DEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
409
+ <Hsp_hseq>MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVAGWL-EDPGEALQGSAAAAAPAAPAAEDPVAETPAPVASAPATPWPLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVSSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDGLAPPQHLIRVEGNMHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPQPKRKTLDGEYFTLKIRGQERFKMFQELNEALELKDAQALKASEDSGAHSSYLKSKKGQSASRLKKLMIKREGPDSD</Hsp_hseq>
410
+ <Hsp_midline>MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LPS ++++L LS +++ W EDPG WPLSSSVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ DGLAPPQHLIRVEGN+ EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP ELPP S KRALP NTSSSPQPK+K LDGEYFTL+IRG+ERF+MF+ELNEALELKDAQA K S AHSS+LKSKKGQS SR KKLM K EGPDSD</Hsp_midline>
411
+ </Hsp>
412
+ </Hit_hsps>
413
+ </Hit>
414
+ <Hit>
415
+ <Hit_num>15</Hit_num>
416
+ <Hit_id>gnl|BL_ORD_ID|8</Hit_id>
417
+ <Hit_def>P53_CRIGR O09185 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
418
+ <Hit_accession>8</Hit_accession>
419
+ <Hit_len>393</Hit_len>
420
+ <Hit_hsps>
421
+ <Hsp>
422
+ <Hsp_num>1</Hsp_num>
423
+ <Hsp_bit-score>594.349</Hsp_bit-score>
424
+ <Hsp_score>1531</Hsp_score>
425
+ <Hsp_evalue>3.94446e-173</Hsp_evalue>
426
+ <Hsp_query-from>1</Hsp_query-from>
427
+ <Hsp_query-to>393</Hsp_query-to>
428
+ <Hsp_hit-from>1</Hsp_hit-from>
429
+ <Hsp_hit-to>393</Hsp_hit-to>
430
+ <Hsp_query-frame>1</Hsp_query-frame>
431
+ <Hsp_hit-frame>1</Hsp_hit-frame>
432
+ <Hsp_identity>296</Hsp_identity>
433
+ <Hsp_positive>321</Hsp_positive>
434
+ <Hsp_gaps>2</Hsp_gaps>
435
+ <Hsp_align-len>394</Hsp_align-len>
436
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQ-AMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
437
+ <Hsp_hseq>MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVTGWLEDSGGALQGVAAAAASTAEDPVTETPAPVASAPATPWPLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVNSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDSLAPPQHLIRVEGNLHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPPPKKKTLDGEYFTLKIRGHERFKMFQELNEALELKDAQASKGSEDNGAHSSYLKSKKGQSASRLKKLMIKREGPDSD</Hsp_hseq>
438
+ <Hsp_midline>MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LPS ++++L LS +++ W + G + WPLSSSVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV+STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ D LAPPQHLIRVEGNL EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP ELPP S KRALP NTSSSP PKKK LDGEYFTL+IRG ERF+MF+ELNEALELKDAQA K + AHSS+LKSKKGQS SR KKLM K EGPDSD</Hsp_midline>
439
+ </Hsp>
440
+ </Hit_hsps>
441
+ </Hit>
442
+ <Hit>
443
+ <Hit_num>16</Hit_num>
444
+ <Hit_id>gnl|BL_ORD_ID|2</Hit_id>
445
+ <Hit_def>P53_BOVIN P67939 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
446
+ <Hit_accession>2</Hit_accession>
447
+ <Hit_len>386</Hit_len>
448
+ <Hit_hsps>
449
+ <Hsp>
450
+ <Hsp_num>1</Hsp_num>
451
+ <Hsp_bit-score>588.956</Hsp_bit-score>
452
+ <Hsp_score>1517</Hsp_score>
453
+ <Hsp_evalue>1.65722e-171</Hsp_evalue>
454
+ <Hsp_query-from>1</Hsp_query-from>
455
+ <Hsp_query-to>393</Hsp_query-to>
456
+ <Hsp_hit-from>1</Hsp_hit-from>
457
+ <Hsp_hit-to>386</Hsp_hit-to>
458
+ <Hsp_query-frame>1</Hsp_query-frame>
459
+ <Hsp_hit-frame>1</Hsp_hit-frame>
460
+ <Hsp_identity>299</Hsp_identity>
461
+ <Hsp_positive>318</Hsp_positive>
462
+ <Hsp_gaps>9</Hsp_gaps>
463
+ <Hsp_align-len>394</Hsp_align-len>
464
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
465
+ <Hsp_hseq>MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWLDECPNE-------APQMPEPSAPAAPPPATPAPATSWPLSSFVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD</Hsp_hseq>
466
+ <Hsp_midline>MEE Q++ +VEPPLSQETFSDLW LLPENN+LS S +DDL L D+ W E P SWPLSS VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+ E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA G+EPG SRAHSSHLKSKK S S HKK M K EGPDSD</Hsp_midline>
467
+ </Hsp>
468
+ </Hit_hsps>
469
+ </Hit>
470
+ <Hit>
471
+ <Hit_num>17</Hit_num>
472
+ <Hit_id>gnl|BL_ORD_ID|1</Hit_id>
473
+ <Hit_def>P53_BOSIN P67938 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
474
+ <Hit_accession>1</Hit_accession>
475
+ <Hit_len>386</Hit_len>
476
+ <Hit_hsps>
477
+ <Hsp>
478
+ <Hsp_num>1</Hsp_num>
479
+ <Hsp_bit-score>588.956</Hsp_bit-score>
480
+ <Hsp_score>1517</Hsp_score>
481
+ <Hsp_evalue>1.65722e-171</Hsp_evalue>
482
+ <Hsp_query-from>1</Hsp_query-from>
483
+ <Hsp_query-to>393</Hsp_query-to>
484
+ <Hsp_hit-from>1</Hsp_hit-from>
485
+ <Hsp_hit-to>386</Hsp_hit-to>
486
+ <Hsp_query-frame>1</Hsp_query-frame>
487
+ <Hsp_hit-frame>1</Hsp_hit-frame>
488
+ <Hsp_identity>299</Hsp_identity>
489
+ <Hsp_positive>318</Hsp_positive>
490
+ <Hsp_gaps>9</Hsp_gaps>
491
+ <Hsp_align-len>394</Hsp_align-len>
492
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
493
+ <Hsp_hseq>MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWLDECPNE-------APQMPEPSAPAAPPPATPAPATSWPLSSFVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD</Hsp_hseq>
494
+ <Hsp_midline>MEE Q++ +VEPPLSQETFSDLW LLPENN+LS S +DDL L D+ W E P SWPLSS VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+ E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA G+EPG SRAHSSHLKSKK S S HKK M K EGPDSD</Hsp_midline>
495
+ </Hsp>
496
+ </Hit_hsps>
497
+ </Hit>
498
+ <Hit>
499
+ <Hit_num>18</Hit_num>
500
+ <Hit_id>gnl|BL_ORD_ID|26</Hit_id>
501
+ <Hit_def>P53_RAT P10361 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
502
+ <Hit_accession>26</Hit_accession>
503
+ <Hit_len>391</Hit_len>
504
+ <Hit_hsps>
505
+ <Hsp>
506
+ <Hsp_num>1</Hsp_num>
507
+ <Hsp_bit-score>575.859</Hsp_bit-score>
508
+ <Hsp_score>1483</Hsp_score>
509
+ <Hsp_evalue>1.4518e-167</Hsp_evalue>
510
+ <Hsp_query-from>1</Hsp_query-from>
511
+ <Hsp_query-to>393</Hsp_query-to>
512
+ <Hsp_hit-from>1</Hsp_hit-from>
513
+ <Hsp_hit-to>391</Hsp_hit-to>
514
+ <Hsp_query-frame>1</Hsp_query-frame>
515
+ <Hsp_hit-frame>1</Hsp_hit-frame>
516
+ <Hsp_identity>295</Hsp_identity>
517
+ <Hsp_positive>317</Hsp_positive>
518
+ <Hsp_gaps>8</Hsp_gaps>
519
+ <Hsp_align-len>396</Hsp_align-len>
520
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPS---QAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
521
+ <Hsp_hseq>MEDSQSDMSIELPLSQETFSCLWKLLPPDDILPTTATGSPNSMEDLFL-PQDVAELLE---GPEEALQVSAPAAQEPGTEAPAPVAPASATP-WPLSSSVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSISLNKLFCQLAKTCPVQLWVTSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNPYAEYLDDRQTFRHSVVVPYEPPEVGSDYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEEHCPELPPGSAKRALPTSTSSSPQQKKKPLDGEYFTLKIRGRERFEMFRELNEALELKDARAAEESGDSRAHSSYPKTKKGQSTSRHKKPMIKKVGPDSD</Hsp_hseq>
522
+ <Hsp_midline>ME+ QSD S+E PLSQETFS LWKLLP +++L + +M+DL L P D+ + GP+E WPLSSSVPSQKTYQG+YGF LGFL SGTAKSV CTYS +LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGN EYLDDR TFRHSVVVPYEPPEVGSD TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK E ELPPGS KRALP +TSSSPQ KKKPLDGEYFTL+IRGRERFEMFRELNEALELKDA+A +E G SRAHSS+ K+KKGQSTSRHKK M K GPDSD</Hsp_midline>
523
+ </Hsp>
524
+ </Hit_hsps>
525
+ </Hit>
526
+ <Hit>
527
+ <Hit_num>19</Hit_num>
528
+ <Hit_id>gnl|BL_ORD_ID|20</Hit_id>
529
+ <Hit_def>P53_MOUSE P02340 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
530
+ <Hit_accession>20</Hit_accession>
531
+ <Hit_len>390</Hit_len>
532
+ <Hit_hsps>
533
+ <Hsp>
534
+ <Hsp_num>1</Hsp_num>
535
+ <Hsp_bit-score>574.318</Hsp_bit-score>
536
+ <Hsp_score>1479</Hsp_score>
537
+ <Hsp_evalue>4.22408e-167</Hsp_evalue>
538
+ <Hsp_query-from>1</Hsp_query-from>
539
+ <Hsp_query-to>393</Hsp_query-to>
540
+ <Hsp_hit-from>4</Hsp_hit-from>
541
+ <Hsp_hit-to>390</Hsp_hit-to>
542
+ <Hsp_query-frame>1</Hsp_query-frame>
543
+ <Hsp_hit-frame>1</Hsp_hit-frame>
544
+ <Hsp_identity>293</Hsp_identity>
545
+ <Hsp_positive>314</Hsp_positive>
546
+ <Hsp_gaps>6</Hsp_gaps>
547
+ <Hsp_align-len>393</Hsp_align-len>
548
+ <Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
549
+ <Hsp_hseq>MEESQSDISLELPLSQETFSGLWKLLPPEDIL-PSP-HCMDDLLL-PQDVEEFFE---GPSEALRVSGAPAAQDPVTETPGPVAPAPATPWPLSSFVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEVLCPELPPGSAKRALPTCTSASPPQKKKPLDGEYFTLKIRGRKRFEMFRELNEALELKDAHATEESGDSRAHSSYLKTKKGQSTSRHKKTMVKKVGPDSD</Hsp_hseq>
550
+ <Hsp_midline>MEE QSD S+E PLSQETFS LWKLLP ++L P P MDDL+L P D+E++F GP E WPLSS VPSQKTYQG+YGF LGFL SGTAKSV CTYSP LNK+FCQLAKTCPVQLWV +TPP G+RVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGNL EYL+DR TFRHSVVVPYEPPE GS+ TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK ELPPGS KRALP TS+SP KKKPLDGEYFTL+IRGR+RFEMFRELNEALELKDA A +E G SRAHSS+LK+KKGQSTSRHKK M K GPDSD</Hsp_midline>
551
+ </Hsp>
552
+ </Hit_hsps>
553
+ </Hit>
554
+ <Hit>
555
+ <Hit_num>20</Hit_num>
556
+ <Hit_id>gnl|BL_ORD_ID|28</Hit_id>
557
+ <Hit_def>P53_SPEBE Q64662 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
558
+ <Hit_accession>28</Hit_accession>
559
+ <Hit_len>314</Hit_len>
560
+ <Hit_hsps>
561
+ <Hsp>
562
+ <Hsp_num>1</Hsp_num>
563
+ <Hsp_bit-score>530.02</Hsp_bit-score>
564
+ <Hsp_score>1364</Hsp_score>
565
+ <Hsp_evalue>9.13575e-154</Hsp_evalue>
566
+ <Hsp_query-from>21</Hsp_query-from>
567
+ <Hsp_query-to>335</Hsp_query-to>
568
+ <Hsp_hit-from>1</Hsp_hit-from>
569
+ <Hsp_hit-to>313</Hsp_hit-to>
570
+ <Hsp_query-frame>1</Hsp_query-frame>
571
+ <Hsp_hit-frame>1</Hsp_hit-frame>
572
+ <Hsp_identity>256</Hsp_identity>
573
+ <Hsp_positive>268</Hsp_positive>
574
+ <Hsp_gaps>2</Hsp_gaps>
575
+ <Hsp_align-len>315</Hsp_align-len>
576
+ <Hsp_qseq>DLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGR</Hsp_qseq>
577
+ <Hsp_hseq>DLWNLLPENNVLSPVLSPPMDDLLLSSEDVENWF--DKGPDEALQMSAAPAPKAPTPAASTLAAPTPAISWPLSSSVPSQNTYPGVYGFRLGFIHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSESTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKRGEPCPEPPPGSTKRALPTGTNSSPQPKKKPLDGEYFTLKIRGR</Hsp_hseq>
578
+ <Hsp_midline>DLW LLPENNVLSP+ S MDDL+LS +D+E WF D GPDE SWPLSSSVPSQ TY G YGFRLGF+HSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGS+ TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RK+GEP E PPGSTKRALP T+SSPQPKKKPLDGEYFTL+IRGR</Hsp_midline>
579
+ </Hsp>
580
+ </Hit_hsps>
581
+ </Hit>
582
+ <Hit>
583
+ <Hit_num>21</Hit_num>
584
+ <Hit_id>gnl|BL_ORD_ID|12</Hit_id>
585
+ <Hit_def>P53_HORSE P79892 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
586
+ <Hit_accession>12</Hit_accession>
587
+ <Hit_len>280</Hit_len>
588
+ <Hit_hsps>
589
+ <Hsp>
590
+ <Hsp_num>1</Hsp_num>
591
+ <Hsp_bit-score>448.743</Hsp_bit-score>
592
+ <Hsp_score>1153</Hsp_score>
593
+ <Hsp_evalue>2.67666e-129</Hsp_evalue>
594
+ <Hsp_query-from>39</Hsp_query-from>
595
+ <Hsp_query-to>329</Hsp_query-to>
596
+ <Hsp_hit-from>2</Hsp_hit-from>
597
+ <Hsp_hit-to>280</Hsp_hit-to>
598
+ <Hsp_query-frame>1</Hsp_query-frame>
599
+ <Hsp_hit-frame>1</Hsp_hit-frame>
600
+ <Hsp_identity>227</Hsp_identity>
601
+ <Hsp_positive>238</Hsp_positive>
602
+ <Hsp_gaps>14</Hsp_gaps>
603
+ <Hsp_align-len>292</Hsp_align-len>
604
+ <Hsp_qseq>AMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFT</Hsp_qseq>
605
+ <Hsp_hseq>AVNNLLLSPD-VVNWL--DEGPDEAPRMPAAPAPLAPAPAT----------SWPLSSFVPSQKTYPGCYGFRLGFLNSGTAKSVTCTYSPTLNKLFCQLAKTCPVQLLVSSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKEEPCPEPPPRSTKRVLSSNTSSSPPQKKKPLDGEYFT</Hsp_hseq>
606
+ <Hsp_midline>A+++L+LSPD + W D GPDE SWPLSS VPSQKTY G YGFRLGFL+SGTAKSVTCTYSP LNK+FCQLAKTCPVQL V S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKK EP E PP STKR L +NTSSSP KKKPLDGEYFT</Hsp_midline>
607
+ </Hsp>
608
+ </Hit_hsps>
609
+ </Hit>
610
+ <Hit>
611
+ <Hit_num>22</Hit_num>
612
+ <Hit_id>gnl|BL_ORD_ID|10</Hit_id>
613
+ <Hit_def>P53_EQUAS Q29480 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
614
+ <Hit_accession>10</Hit_accession>
615
+ <Hit_len>207</Hit_len>
616
+ <Hit_hsps>
617
+ <Hsp>
618
+ <Hsp_num>1</Hsp_num>
619
+ <Hsp_bit-score>374.015</Hsp_bit-score>
620
+ <Hsp_score>959</Hsp_score>
621
+ <Hsp_evalue>8.37873e-107</Hsp_evalue>
622
+ <Hsp_query-from>126</Hsp_query-from>
623
+ <Hsp_query-to>330</Hsp_query-to>
624
+ <Hsp_hit-from>1</Hsp_hit-from>
625
+ <Hsp_hit-to>206</Hsp_hit-to>
626
+ <Hsp_query-frame>1</Hsp_query-frame>
627
+ <Hsp_hit-frame>1</Hsp_hit-frame>
628
+ <Hsp_identity>181</Hsp_identity>
629
+ <Hsp_positive>187</Hsp_positive>
630
+ <Hsp_gaps>1</Hsp_gaps>
631
+ <Hsp_align-len>206</Hsp_align-len>
632
+ <Hsp_qseq>YSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTL</Hsp_qseq>
633
+ <Hsp_hseq>YSPALNKMFCQLAKTCPVYLRISSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTLRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKEEPCPEPPPRSTKRVLSSNTSSSPPQKEDPLDGEYFTL</Hsp_hseq>
634
+ <Hsp_midline>YSPALNKMFCQLAKTCPV L + S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR EYLDDRNT RHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKK EP E PP STKR L +NTSSSP K+ PLDGEYFTL</Hsp_midline>
635
+ </Hsp>
636
+ </Hit_hsps>
637
+ </Hit>
638
+ <Hit>
639
+ <Hit_num>23</Hit_num>
640
+ <Hit_id>gnl|BL_ORD_ID|7</Hit_id>
641
+ <Hit_def>P53_CHICK P10360 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
642
+ <Hit_accession>7</Hit_accession>
643
+ <Hit_len>367</Hit_len>
644
+ <Hit_hsps>
645
+ <Hsp>
646
+ <Hsp_num>1</Hsp_num>
647
+ <Hsp_bit-score>355.91</Hsp_bit-score>
648
+ <Hsp_score>912</Hsp_score>
649
+ <Hsp_evalue>2.36124e-101</Hsp_evalue>
650
+ <Hsp_query-from>5</Hsp_query-from>
651
+ <Hsp_query-to>386</Hsp_query-to>
652
+ <Hsp_hit-from>4</Hsp_hit-from>
653
+ <Hsp_hit-to>364</Hsp_hit-to>
654
+ <Hsp_query-frame>1</Hsp_query-frame>
655
+ <Hsp_hit-frame>1</Hsp_hit-frame>
656
+ <Hsp_identity>197</Hsp_identity>
657
+ <Hsp_positive>240</Hsp_positive>
658
+ <Hsp_gaps>27</Hsp_gaps>
659
+ <Hsp_align-len>385</Hsp_align-len>
660
+ <Hsp_qseq>QSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFK</Hsp_qseq>
661
+ <Hsp_hseq>EMEPLLEPT---EVFMDLWSMLPYSMQQLPLPEDHSNWQELSPLE-----PSDPPPPPPPPPLPLAAAAPPPLNPPTPPRAAP------SPVVPSTEDYGGDFDFRVGFVEAGTAKSVTCTYSPVLNKVYCRLAKPCPVQVRVGVAPPPGSSLRAVAVYKKSEHVAEVVRRCPHHERCGGGTDGLAPAQHLIRVEGNPQARYHDDETTKRHSVVVPYEPPEVGSDCTTVLYNFMCNSSCMGGMNRRPILTILTLEGPGGQLLGRRCFEVRVCACPGRDRKIEEENFRKRGG-----AGGVAKRAMSPPTEAPEPPKKRVLNPDNEIFYLQVRGRRRYEMLKEINEALQL--AEGGSAPRPSKGRRVKV---EGPQPSCGKKLLQK</Hsp_hseq>
662
+ <Hsp_midline>+ +P +EP E F DLW +LP + PLP + LSP + DP P S VPS + Y G + FR+GF+ +GTAKSVTCTYSP LNK++C+LAK CPVQ+ V PPPG+ +RA+A+YK+S+H+ EVVRRCPHHERC +DGLAP QHLIRVEGN + Y DD T RHSVVVPYEPPEVGSDCTT+ YN+MCNSSCMGGMNRRPILTI+TLE G LLGR FEVRVCACPGRDR+ EEEN RK+G G KRA+ T + PKK+ L D E F LQ+RGR R+EM +E+NEAL+L A+ G P S+ + +G S KKL+ K</Hsp_midline>
663
+ </Hsp>
664
+ </Hit_hsps>
665
+ </Hit>
666
+ <Hit>
667
+ <Hit_num>24</Hit_num>
668
+ <Hit_id>gnl|BL_ORD_ID|21</Hit_id>
669
+ <Hit_def>P53_ONCMY P25035 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
670
+ <Hit_accession>21</Hit_accession>
671
+ <Hit_len>396</Hit_len>
672
+ <Hit_hsps>
673
+ <Hsp>
674
+ <Hsp_num>1</Hsp_num>
675
+ <Hsp_bit-score>343.969</Hsp_bit-score>
676
+ <Hsp_score>881</Hsp_score>
677
+ <Hsp_evalue>9.28528e-98</Hsp_evalue>
678
+ <Hsp_query-from>9</Hsp_query-from>
679
+ <Hsp_query-to>393</Hsp_query-to>
680
+ <Hsp_hit-from>7</Hsp_hit-from>
681
+ <Hsp_hit-to>396</Hsp_hit-to>
682
+ <Hsp_query-frame>1</Hsp_query-frame>
683
+ <Hsp_hit-frame>1</Hsp_hit-frame>
684
+ <Hsp_identity>194</Hsp_identity>
685
+ <Hsp_positive>245</Hsp_positive>
686
+ <Hsp_gaps>33</Hsp_gaps>
687
+ <Hsp_align-len>404</Hsp_align-len>
688
+ <Hsp_qseq>SVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTED----PGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHEL---PPGSTKRALPNNTSSSPQP------KKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKK---GQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
689
+ <Hsp_hseq>NVSLPLSQESFEDLWKM-------------NLNLVAVQPPETESWVGYDNFMMEAPLQVEFDPSLFEVSATEPAPQPSISTLDTGS-PPTSTVPTTSDYPGALGFQLRFLQSSTAKSVTCTYSPDLNKLFCQLAKTCPVQIVVDHPPPPGAVVRALAIYKKLSDVADVVRRCPHHQSTSENNEGPAPRGHLVRVEGNQRSEYMEDGNTLRHSVLVPYEPPQVGSECTTVLYNFMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEEINLKKQQETTLETKTKPAQGIKRAMKEASLPAPQPGASKKTKSSPAVSDDEIYTLQIRGKEKYEMLKKFNDSLELSELVPVADADKYRQKCLTKRVAKRDFGVGPKKRKKLLVKEEKSDSD</Hsp_hseq>
690
+ <Hsp_midline>+V PLSQE+F DLWK+ ++ + + P + E W D P + S P +S+VP+ Y G+ GF+L FL S TAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD PPPG VRA+AIYK+ + +VVRRCPHH+ S++ +G AP HL+RVEGN R EY++D NT RHSV+VPYEPP+VGS+CTT+ YN+MCNSSCMGGMNRRPILTIITLE G LLGR SFEVRVCACPGRDR+TEE NL+K+ E E P KRA+ + +PQP K P D E +TLQIRG+E++EM ++ N++LEL + + R + K G + KKL+ K E DSD</Hsp_midline>
691
+ </Hsp>
692
+ </Hit_hsps>
693
+ </Hit>
694
+ <Hit>
695
+ <Hit_num>25</Hit_num>
696
+ <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
697
+ <Hit_def>P53_BARBU Q9W678 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
698
+ <Hit_accession>0</Hit_accession>
699
+ <Hit_len>369</Hit_len>
700
+ <Hit_hsps>
701
+ <Hsp>
702
+ <Hsp_num>1</Hsp_num>
703
+ <Hsp_bit-score>341.658</Hsp_bit-score>
704
+ <Hsp_score>875</Hsp_score>
705
+ <Hsp_evalue>4.60823e-97</Hsp_evalue>
706
+ <Hsp_query-from>92</Hsp_query-from>
707
+ <Hsp_query-to>393</Hsp_query-to>
708
+ <Hsp_hit-from>56</Hsp_hit-from>
709
+ <Hsp_hit-to>369</Hsp_hit-to>
710
+ <Hsp_query-frame>1</Hsp_query-frame>
711
+ <Hsp_hit-frame>1</Hsp_hit-frame>
712
+ <Hsp_identity>181</Hsp_identity>
713
+ <Hsp_positive>219</Hsp_positive>
714
+ <Hsp_gaps>12</Hsp_gaps>
715
+ <Hsp_align-len>314</Hsp_align-len>
716
+ <Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPH--HELPPGSTKRALPNNTSSSPQP---KKKPLDG----EYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAH-SSHLKSKKGQS--TSRHKKLMFKTEGPDSD</Hsp_qseq>
717
+ <Hsp_hseq>PPTASVPVATDYPGEHGFKLGFPQSGTAKSVTCTYSSDLNKLFCQLAKTCPVQMVVNVAPPQGSVIRATAIYKKSEHVAEVVRRCPHHERTPDGDGLAPAAHLIRVEGNSRALYREDDVNSRHSVVVPYEVPQLGSEFTTVLYNFMCNSSCMGGMNRRPILTIISLETHDGQLLGRRSFEVRVCACPGRDRKTEESNFRKDQETKTLDKIPSANKRSLTKDSTSSVPRPEGSKKAKLSGSSDEEIYTLQVRGKERYEMLKKINDSLELSDVVPPSEMDRYRQKLLTKGKKKDGQTPEPKRGKKLMVKDEKSDSD</Hsp_hseq>
718
+ <Hsp_midline>P ++SVP Y G +GF+LGF SGTAKSVTCTYS LNK+FCQLAKTCPVQ+ V+ PP G+ +RA AIYK+S+H+ EVVRRCPHHER D DGLAP HLIRVEGN R Y +D RHSVVVPYE P++GS+ TT+ YN+MCNSSCMGGMNRRPILTII+LE G LLGR SFEVRVCACPGRDR+TEE N RK E ++P + + ++TSS P+P KK L G E +TLQ+RG+ER+EM +++N++LEL D E R + K K GQ+ R KKLM K E DSD</Hsp_midline>
719
+ </Hsp>
720
+ </Hit_hsps>
721
+ </Hit>
722
+ <Hit>
723
+ <Hit_num>26</Hit_num>
724
+ <Hit_id>gnl|BL_ORD_ID|3</Hit_id>
725
+ <Hit_def>P53_BRARE P79734 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
726
+ <Hit_accession>3</Hit_accession>
727
+ <Hit_len>373</Hit_len>
728
+ <Hit_hsps>
729
+ <Hsp>
730
+ <Hsp_num>1</Hsp_num>
731
+ <Hsp_bit-score>338.576</Hsp_bit-score>
732
+ <Hsp_score>867</Hsp_score>
733
+ <Hsp_evalue>3.9011e-96</Hsp_evalue>
734
+ <Hsp_query-from>92</Hsp_query-from>
735
+ <Hsp_query-to>393</Hsp_query-to>
736
+ <Hsp_hit-from>60</Hsp_hit-from>
737
+ <Hsp_hit-to>373</Hsp_hit-to>
738
+ <Hsp_query-frame>1</Hsp_query-frame>
739
+ <Hsp_hit-frame>1</Hsp_hit-frame>
740
+ <Hsp_identity>181</Hsp_identity>
741
+ <Hsp_positive>215</Hsp_positive>
742
+ <Hsp_gaps>12</Hsp_gaps>
743
+ <Hsp_align-len>314</Hsp_align-len>
744
+ <Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGS-TKRALPNNTSSS---PQPKKK----PLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTS---RHKKLMFKTEG-PDSD</Hsp_qseq>
745
+ <Hsp_hseq>PPTSTVPETSDYPGDHGFRLRFPQSGTAKSVTCTYSPDLNKLFCQLAKTCPVQMVVDVAPPQGSVVRATAIYKKSEHVAEVVRRCPHHERTPDGDNLAPAGHLIRVEGNQRANYREDNITLRHSVFVPYEAPQLGAEWTTVLLNYMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEESNFKKDQETKTMAKTTTGTKRSLVKESSSATLRPEGSKKAKGSSSDEEIFTLQVRGRERYEILKKLNDSLELSDVVPASDAEKYRQKFMTKNKKENRESSEPKQGKKLMVKDEGRSDSD</Hsp_hseq>
746
+ <Hsp_midline>P +S+VP Y G +GFRL F SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD PP G+ VRA AIYK+S+H+ EVVRRCPHHER D D LAP HLIRVEGN R Y +D T RHSV VPYE P++G++ TT+ NYMCNSSCMGGMNRRPILTIITLE G LLGR SFEVRVCACPGRDR+TEE N +K E + TKR+L +SS+ P+ KK D E FTLQ+RGRER+E+ ++LN++LEL D + R K+ + +S + KKLM K EG DSD</Hsp_midline>
747
+ </Hsp>
748
+ </Hit_hsps>
749
+ </Hit>
750
+ <Hit>
751
+ <Hit_num>27</Hit_num>
752
+ <Hit_id>gnl|BL_ORD_ID|14</Hit_id>
753
+ <Hit_def>P53_ICTPU O93379 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
754
+ <Hit_accession>14</Hit_accession>
755
+ <Hit_len>376</Hit_len>
756
+ <Hit_hsps>
757
+ <Hsp>
758
+ <Hsp_num>1</Hsp_num>
759
+ <Hsp_bit-score>333.183</Hsp_bit-score>
760
+ <Hsp_score>853</Hsp_score>
761
+ <Hsp_evalue>1.63901e-94</Hsp_evalue>
762
+ <Hsp_query-from>10</Hsp_query-from>
763
+ <Hsp_query-to>393</Hsp_query-to>
764
+ <Hsp_hit-from>12</Hsp_hit-from>
765
+ <Hsp_hit-to>376</Hsp_hit-to>
766
+ <Hsp_query-frame>1</Hsp_query-frame>
767
+ <Hsp_hit-frame>1</Hsp_hit-frame>
768
+ <Hsp_identity>192</Hsp_identity>
769
+ <Hsp_positive>240</Hsp_positive>
770
+ <Hsp_gaps>41</Hsp_gaps>
771
+ <Hsp_align-len>395</Hsp_align-len>
772
+ <Hsp_qseq>VEPPLSQETFSDLW--KLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRAL---PNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDA--QAGKEPGGSRAHSSHLKSKKGQST---SRHKKLMFKTEGPDSD</Hsp_qseq>
773
+ <Hsp_hseq>VEPPDSQE-FAELWLRNLIVRDNSLWGKEEEIPDDLQEVPCDVLLSDMLQPQSS----------------------------SSPPTSTVPVTSDYPGLLNFTLHFQESSGTKSVTCTYSPDLNKLFCQLAKTCPVLMAVSSSPPPGSVLRATAVYKRSEHVAEVVRRCPHHERSNDSSDGPAPPGHLLRVEGNSRAVYQEDGNTQAHSVVVPYEPPQVGSQSTTVLYNYMCNSSCMGGMNRRPILTIITLETQDGHLLGRRTFEVRVCACPGRDRKTEESNFKKQQEPKTS-GKTLTKRSMKDPPSHPEASKKSKNSSSDDEIYTLQVRGKERYEFLKKINDGLELSDVVPPADQEKYRQKLLSKTCRKERDGAAGEPKRGKKRLVKEEKCDSD</Hsp_hseq>
774
+ <Hsp_midline>VEPP SQE F++LW L+ +N L + DDL P D+ P S P +S+VP Y G F L F S KSVTCTYSP LNK+FCQLAKTCPV + V S+PPPG+ +RA A+YK+S+H+ EVVRRCPHHER +DS DG APP HL+RVEGN R Y +D NT HSVVVPYEPP+VGS TT+ YNYMCNSSCMGGMNRRPILTIITLE G+LLGR +FEVRVCACPGRDR+TEE N +K+ EP TKR++ P++ +S + K D E +TLQ+RG+ER+E +++N+ LEL D A +E + S + ++ + R KK + K E DSD</Hsp_midline>
775
+ </Hsp>
776
+ </Hit_hsps>
777
+ </Hit>
778
+ <Hit>
779
+ <Hit_num>28</Hit_num>
780
+ <Hit_id>gnl|BL_ORD_ID|29</Hit_id>
781
+ <Hit_def>P53_TETMU Q9W679 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
782
+ <Hit_accession>29</Hit_accession>
783
+ <Hit_len>367</Hit_len>
784
+ <Hit_hsps>
785
+ <Hsp>
786
+ <Hsp_num>1</Hsp_num>
787
+ <Hsp_bit-score>267.7</Hsp_bit-score>
788
+ <Hsp_score>683</Hsp_score>
789
+ <Hsp_evalue>8.45682e-75</Hsp_evalue>
790
+ <Hsp_query-from>7</Hsp_query-from>
791
+ <Hsp_query-to>393</Hsp_query-to>
792
+ <Hsp_hit-from>3</Hsp_hit-from>
793
+ <Hsp_hit-to>367</Hsp_hit-to>
794
+ <Hsp_query-frame>1</Hsp_query-frame>
795
+ <Hsp_hit-frame>1</Hsp_hit-frame>
796
+ <Hsp_identity>159</Hsp_identity>
797
+ <Hsp_positive>220</Hsp_positive>
798
+ <Hsp_gaps>32</Hsp_gaps>
799
+ <Hsp_align-len>392</Hsp_align-len>
800
+ <Hsp_qseq>DPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKK-----KPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
801
+ <Hsp_hseq>EENISLPLSQDTFQDLW-----DNVSAP----PISTIQTAALENEAWPAERQMNMMCNFMDSTFNEALFNLLPEPPSRDGANSSSP---TVPVTTDYPGEYGFKLRFQKSGTAKSVTSTYSEILNKLYCQLAKTSLVEVLLGKDPPMGAVLRATAIYKKTEHVAEVVRRCPHHQ---NEDSAEHRSHLIRMEGSERAQYFEHPHTKRQSVTVPYEPPQLGSEFTTILLSFMCNSSCMGGMNRRPILTILTLETQEGIVLGRRCFEVRVCACPGRDRKTEETNSTKM---QNDAKDAKKRKSVPTPDSTTIKKSKTASSAEEDNNEVYTLQIRGRKRYEMLKKINDGLDLLE----NKPKSKATH-----RPDGPIPPSGKRLLHRGEKSDSD</Hsp_hseq>
802
+ <Hsp_midline>+ ++ PLSQ+TF DLW +NV +P + + + + E W E S P +VP Y G YGF+L F SGTAKSVT TYS LNK++CQLAKT V++ + PP G +RA AIYK+++H+ EVVRRCPHH+ + D HLIR+EG+ R +Y + +T R SV VPYEPP++GS+ TTI ++MCNSSCMGGMNRRPILTI+TLE G +LGR FEVRVCACPGRDR+TEE N K ++ ++++P S++ + K + + E +TLQIRGR+R+EM +++N+ L+L + +P H G K+L+ + E DSD</Hsp_midline>
803
+ </Hsp>
804
+ </Hit_hsps>
805
+ </Hit>
806
+ <Hit>
807
+ <Hit_num>29</Hit_num>
808
+ <Hit_id>gnl|BL_ORD_ID|22</Hit_id>
809
+ <Hit_def>P53_ORYLA P79820 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
810
+ <Hit_accession>22</Hit_accession>
811
+ <Hit_len>352</Hit_len>
812
+ <Hit_hsps>
813
+ <Hsp>
814
+ <Hsp_num>1</Hsp_num>
815
+ <Hsp_bit-score>262.307</Hsp_bit-score>
816
+ <Hsp_score>669</Hsp_score>
817
+ <Hsp_evalue>3.55304e-73</Hsp_evalue>
818
+ <Hsp_query-from>92</Hsp_query-from>
819
+ <Hsp_query-to>371</Hsp_query-to>
820
+ <Hsp_hit-from>77</Hsp_hit-from>
821
+ <Hsp_hit-to>351</Hsp_hit-to>
822
+ <Hsp_query-frame>1</Hsp_query-frame>
823
+ <Hsp_hit-frame>1</Hsp_hit-frame>
824
+ <Hsp_identity>142</Hsp_identity>
825
+ <Hsp_positive>190</Hsp_positive>
826
+ <Hsp_gaps>21</Hsp_gaps>
827
+ <Hsp_align-len>288</Hsp_align-len>
828
+ <Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPK-----KKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQA---GKEPGGSRAHSSHLKS</Hsp_qseq>
829
+ <Hsp_hseq>PPPTTVPVTTDYPGSYELELRFQKSGTAKSVTSTYSETLNKLYCQLAKTSPIEVRVSKEPPKGAILRATAVYKKTEHVADVVRRCPHHQ---NEDSVEHRSHLIRVEGSQLAQYFEDPYTKRQSVTVPYEPPQPGSEMTTILLSYMCNSSCMGGMNRRPILTILTLE-TEGLVLGRRCFEVRICACPGRDRKTEEES-RQKTQP--------KKRKVTPNTSSSKRKKSHSSGEEEDNREVFHFEVYGRERYEFLKKINDGLELLEKESKSKNKDSGMVPSSGKKLKS</Hsp_hseq>
830
+ <Hsp_midline>P ++VP Y GSY L F SGTAKSVT TYS LNK++CQLAKT P+++ V PP G +RA A+YK+++H+ +VVRRCPHH+ + D + HLIRVEG+ +Y +D T R SV VPYEPP+ GS+ TTI +YMCNSSCMGGMNRRPILTI+TLE + G +LGR FEVR+CACPGRDR+TEEE+ R+K +P KR + NTSSS + K ++ + E F ++ GRER+E +++N+ LEL + ++ K+ G + LKS</Hsp_midline>
831
+ </Hsp>
832
+ </Hit_hsps>
833
+ </Hit>
834
+ <Hit>
835
+ <Hit_num>30</Hit_num>
836
+ <Hit_id>gnl|BL_ORD_ID|24</Hit_id>
837
+ <Hit_def>P53_PLAFE O12946 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
838
+ <Hit_accession>24</Hit_accession>
839
+ <Hit_len>366</Hit_len>
840
+ <Hit_hsps>
841
+ <Hsp>
842
+ <Hsp_num>1</Hsp_num>
843
+ <Hsp_bit-score>259.225</Hsp_bit-score>
844
+ <Hsp_score>661</Hsp_score>
845
+ <Hsp_evalue>3.00783e-72</Hsp_evalue>
846
+ <Hsp_query-from>92</Hsp_query-from>
847
+ <Hsp_query-to>393</Hsp_query-to>
848
+ <Hsp_hit-from>70</Hsp_hit-from>
849
+ <Hsp_hit-to>366</Hsp_hit-to>
850
+ <Hsp_query-frame>1</Hsp_query-frame>
851
+ <Hsp_hit-frame>1</Hsp_hit-frame>
852
+ <Hsp_identity>145</Hsp_identity>
853
+ <Hsp_positive>197</Hsp_positive>
854
+ <Hsp_gaps>23</Hsp_gaps>
855
+ <Hsp_align-len>311</Hsp_align-len>
856
+ <Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEE------NLRKKGEPHHELPPGS---TKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
857
+ <Hsp_hseq>PPSSTVPVVTDYPGEYGFQLRFQKSGTAKSVTSTFSELLKKLYCQLAKTSPVEVLLSKEPPQGAVLRATAVYKKTEHVADVVRRCPHHQT---EDTAEHRSHLIRLEGSQRALYFEDPHTKRQSVTVPYEPPQLGSETTAILLSFMCNSSCMGGMNRRQILTILTLETPDGLVLGRRCFEVRVCACPGRDRKTDEESSTKTPNGPKQTKKRKQAPSNSAPHTTTVMKSKSSSSAEEE----DKEVFTVLVKGRERYEIIKKINEAFE---GAAEKE----KAKNKVAVKQELPVPSSGKRLVQRGERSDSD</Hsp_hseq>
858
+ <Hsp_midline>P SS+VP Y G YGF+L F SGTAKSVT T+S L K++CQLAKT PV++ + PP G +RA A+YK+++H+ +VVRRCPHH+ D HLIR+EG+ R Y +D +T R SV VPYEPP++GS+ T I ++MCNSSCMGGMNRR ILTI+TLE G +LGR FEVRVCACPGRDR+T+EE N K+ + + P S T + + +SSS + + D E FT+ ++GRER+E+ +++NEA E A KE +A + ++ S K+L+ + E DSD</Hsp_midline>
859
+ </Hsp>
860
+ </Hit_hsps>
861
+ </Hit>
862
+ </Iteration_hits>
863
+ <Iteration_stat>
864
+ <Statistics>
865
+ <Statistics_db-num>30</Statistics_db-num>
866
+ <Statistics_db-len>11169</Statistics_db-len>
867
+ <Statistics_hsp-len>53</Statistics_hsp-len>
868
+ <Statistics_eff-space>3.25686e+06</Statistics_eff-space>
869
+ <Statistics_kappa>0.041</Statistics_kappa>
870
+ <Statistics_lambda>0.267</Statistics_lambda>
871
+ <Statistics_entropy>0.14</Statistics_entropy>
872
+ </Statistics>
873
+ </Iteration_stat>
874
+ </Iteration>
875
+ </BlastOutput_iterations>
876
+ </BlastOutput>