bio 1.0.0 → 1.1.0
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- data/bin/bioruby +14 -122
- data/bin/br_biofetch.rb +2 -2
- data/bin/br_bioflat.rb +2 -2
- data/bin/br_biogetseq.rb +2 -2
- data/bin/br_pmfetch.rb +3 -3
- data/doc/Changes-0.7.rd +77 -0
- data/doc/KEGG_API.rd +523 -232
- data/doc/KEGG_API.rd.ja +529 -207
- data/doc/Tutorial.rd +48 -11
- data/lib/bio.rb +59 -6
- data/lib/bio/alignment.rb +713 -103
- data/lib/bio/appl/bl2seq/report.rb +2 -18
- data/lib/bio/appl/blast.rb +108 -91
- data/lib/bio/appl/blast/format0.rb +33 -18
- data/lib/bio/appl/blast/format8.rb +6 -20
- data/lib/bio/appl/blast/report.rb +293 -429
- data/lib/bio/appl/blast/rexml.rb +8 -22
- data/lib/bio/appl/blast/wublast.rb +21 -12
- data/lib/bio/appl/blast/xmlparser.rb +180 -183
- data/lib/bio/appl/blat/report.rb +127 -30
- data/lib/bio/appl/clustalw.rb +87 -59
- data/lib/bio/appl/clustalw/report.rb +20 -22
- data/lib/bio/appl/emboss.rb +113 -20
- data/lib/bio/appl/fasta.rb +173 -198
- data/lib/bio/appl/fasta/format10.rb +244 -347
- data/lib/bio/appl/gcg/msf.rb +212 -0
- data/lib/bio/appl/gcg/seq.rb +195 -0
- data/lib/bio/appl/genscan/report.rb +5 -23
- data/lib/bio/appl/hmmer.rb +8 -45
- data/lib/bio/appl/hmmer/report.rb +2 -20
- data/lib/bio/appl/iprscan/report.rb +374 -0
- data/lib/bio/appl/mafft.rb +87 -50
- data/lib/bio/appl/mafft/report.rb +151 -44
- data/lib/bio/appl/muscle.rb +52 -0
- data/lib/bio/appl/phylip/alignment.rb +129 -0
- data/lib/bio/appl/phylip/distance_matrix.rb +96 -0
- data/lib/bio/appl/probcons.rb +41 -0
- data/lib/bio/appl/psort.rb +89 -96
- data/lib/bio/appl/psort/report.rb +6 -22
- data/lib/bio/appl/pts1.rb +263 -0
- data/lib/bio/appl/sim4.rb +26 -36
- data/lib/bio/appl/sim4/report.rb +2 -18
- data/lib/bio/appl/sosui/report.rb +5 -20
- data/lib/bio/appl/spidey/report.rb +2 -2
- data/lib/bio/appl/targetp/report.rb +4 -20
- data/lib/bio/appl/tcoffee.rb +55 -0
- data/lib/bio/appl/tmhmm/report.rb +4 -20
- data/lib/bio/command.rb +235 -64
- data/lib/bio/data/aa.rb +21 -26
- data/lib/bio/data/codontable.rb +2 -20
- data/lib/bio/data/na.rb +19 -4
- data/lib/bio/db.rb +27 -12
- data/lib/bio/db/aaindex.rb +2 -20
- data/lib/bio/db/embl/common.rb +4 -21
- data/lib/bio/db/embl/embl.rb +33 -85
- data/lib/bio/db/embl/sptr.rb +612 -302
- data/lib/bio/db/embl/swissprot.rb +10 -29
- data/lib/bio/db/embl/trembl.rb +10 -29
- data/lib/bio/db/embl/uniprot.rb +10 -29
- data/lib/bio/db/fantom.rb +15 -20
- data/lib/bio/db/fasta.rb +3 -3
- data/lib/bio/db/genbank/common.rb +37 -46
- data/lib/bio/db/genbank/ddbj.rb +6 -18
- data/lib/bio/db/genbank/genbank.rb +47 -186
- data/lib/bio/db/genbank/genpept.rb +4 -17
- data/lib/bio/db/genbank/refseq.rb +4 -17
- data/lib/bio/db/gff.rb +103 -35
- data/lib/bio/db/go.rb +4 -20
- data/lib/bio/db/kegg/brite.rb +26 -36
- data/lib/bio/db/kegg/compound.rb +81 -85
- data/lib/bio/db/kegg/drug.rb +98 -0
- data/lib/bio/db/kegg/enzyme.rb +133 -110
- data/lib/bio/db/kegg/expression.rb +2 -20
- data/lib/bio/db/kegg/genes.rb +208 -238
- data/lib/bio/db/kegg/genome.rb +164 -285
- data/lib/bio/db/kegg/glycan.rb +114 -157
- data/lib/bio/db/kegg/keggtab.rb +242 -303
- data/lib/bio/db/kegg/kgml.rb +117 -160
- data/lib/bio/db/kegg/orthology.rb +112 -0
- data/lib/bio/db/kegg/reaction.rb +54 -69
- data/lib/bio/db/kegg/taxonomy.rb +331 -0
- data/lib/bio/db/lasergene.rb +209 -0
- data/lib/bio/db/litdb.rb +3 -27
- data/lib/bio/db/medline.rb +228 -249
- data/lib/bio/db/nbrf.rb +3 -3
- data/lib/bio/db/newick.rb +510 -0
- data/lib/bio/db/nexus.rb +1854 -0
- data/lib/bio/db/pdb.rb +5 -17
- data/lib/bio/db/pdb/atom.rb +2 -18
- data/lib/bio/db/pdb/chain.rb +2 -18
- data/lib/bio/db/pdb/chemicalcomponent.rb +2 -18
- data/lib/bio/db/pdb/model.rb +2 -18
- data/lib/bio/db/pdb/pdb.rb +73 -34
- data/lib/bio/db/pdb/residue.rb +4 -20
- data/lib/bio/db/pdb/utils.rb +2 -18
- data/lib/bio/db/prosite.rb +403 -422
- data/lib/bio/db/rebase.rb +84 -40
- data/lib/bio/db/soft.rb +404 -0
- data/lib/bio/db/transfac.rb +5 -17
- data/lib/bio/feature.rb +106 -52
- data/lib/bio/io/das.rb +32 -42
- data/lib/bio/io/dbget.rb +2 -20
- data/lib/bio/io/ddbjxml.rb +77 -138
- data/lib/bio/io/ebisoap.rb +158 -0
- data/lib/bio/io/ensembl.rb +229 -0
- data/lib/bio/io/fastacmd.rb +89 -82
- data/lib/bio/io/fetch.rb +163 -96
- data/lib/bio/io/flatfile.rb +170 -73
- data/lib/bio/io/flatfile/bdb.rb +3 -16
- data/lib/bio/io/flatfile/index.rb +2 -2
- data/lib/bio/io/flatfile/indexer.rb +3 -2
- data/lib/bio/io/higet.rb +12 -31
- data/lib/bio/io/keggapi.rb +210 -269
- data/lib/bio/io/ncbisoap.rb +155 -0
- data/lib/bio/io/pubmed.rb +169 -147
- data/lib/bio/io/registry.rb +4 -20
- data/lib/bio/io/soapwsdl.rb +43 -38
- data/lib/bio/io/sql.rb +242 -305
- data/lib/bio/location.rb +407 -285
- data/lib/bio/map.rb +410 -0
- data/lib/bio/pathway.rb +558 -695
- data/lib/bio/reference.rb +272 -75
- data/lib/bio/sequence.rb +255 -13
- data/lib/bio/sequence/aa.rb +71 -10
- data/lib/bio/sequence/common.rb +187 -33
- data/lib/bio/sequence/compat.rb +59 -4
- data/lib/bio/sequence/format.rb +54 -7
- data/lib/bio/sequence/generic.rb +3 -3
- data/lib/bio/sequence/na.rb +328 -26
- data/lib/bio/shell.rb +11 -4
- data/lib/bio/shell/core.rb +221 -160
- data/lib/bio/shell/demo.rb +18 -15
- data/lib/bio/shell/interface.rb +14 -12
- data/lib/bio/shell/irb.rb +95 -0
- data/lib/bio/shell/object.rb +45 -26
- data/lib/bio/shell/plugin/blast.rb +42 -0
- data/lib/bio/shell/plugin/codon.rb +22 -14
- data/lib/bio/shell/plugin/das.rb +58 -0
- data/lib/bio/shell/plugin/emboss.rb +2 -2
- data/lib/bio/shell/plugin/entry.rb +22 -11
- data/lib/bio/shell/plugin/flatfile.rb +2 -2
- data/lib/bio/shell/plugin/keggapi.rb +13 -6
- data/lib/bio/shell/plugin/midi.rb +4 -4
- data/lib/bio/shell/plugin/obda.rb +2 -2
- data/lib/bio/shell/plugin/psort.rb +56 -0
- data/lib/bio/shell/plugin/seq.rb +35 -8
- data/lib/bio/shell/plugin/soap.rb +87 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/bioruby_generator.rb +29 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_classes.rhtml +4 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_log.rhtml +27 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_methods.rhtml +11 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_modules.rhtml +4 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_variables.rhtml +7 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-bg.gif +0 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-console.png +0 -0
- data/lib/bio/shell/rails/{public/images/icon.png → vendor/plugins/generators/bioruby/templates/bioruby-gem.png} +0 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-link.gif +0 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css +369 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.rhtml +47 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_controller.rb +144 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_helper.rb +47 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/commands.rhtml +8 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/history.rhtml +10 -0
- data/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml +22 -0
- data/lib/bio/shell/script.rb +25 -0
- data/lib/bio/shell/setup.rb +109 -0
- data/lib/bio/shell/web.rb +70 -58
- data/lib/bio/tree.rb +850 -0
- data/lib/bio/util/color_scheme.rb +84 -107
- data/lib/bio/util/color_scheme/buried.rb +5 -24
- data/lib/bio/util/color_scheme/helix.rb +5 -24
- data/lib/bio/util/color_scheme/hydropathy.rb +5 -24
- data/lib/bio/util/color_scheme/nucleotide.rb +5 -24
- data/lib/bio/util/color_scheme/strand.rb +5 -24
- data/lib/bio/util/color_scheme/taylor.rb +5 -24
- data/lib/bio/util/color_scheme/turn.rb +5 -24
- data/lib/bio/util/color_scheme/zappo.rb +5 -24
- data/lib/bio/util/contingency_table.rb +70 -43
- data/lib/bio/util/restriction_enzyme.rb +228 -0
- data/lib/bio/util/restriction_enzyme/analysis.rb +249 -0
- data/lib/bio/util/restriction_enzyme/analysis_basic.rb +217 -0
- data/lib/bio/util/restriction_enzyme/cut_symbol.rb +107 -0
- data/lib/bio/util/restriction_enzyme/double_stranded.rb +321 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb +130 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb +103 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb +38 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb +76 -0
- data/lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb +107 -0
- data/lib/bio/util/restriction_enzyme/enzymes.yaml +7061 -0
- data/lib/bio/util/restriction_enzyme/range/cut_range.rb +24 -0
- data/lib/bio/util/restriction_enzyme/range/cut_ranges.rb +47 -0
- data/lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb +67 -0
- data/lib/bio/util/restriction_enzyme/range/sequence_range.rb +257 -0
- data/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb +242 -0
- data/lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb +51 -0
- data/lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb +41 -0
- data/lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb +77 -0
- data/lib/bio/util/restriction_enzyme/single_strand.rb +199 -0
- data/lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb +135 -0
- data/lib/bio/util/restriction_enzyme/single_strand_complement.rb +23 -0
- data/lib/bio/util/restriction_enzyme/string_formatting.rb +111 -0
- data/lib/bio/util/sirna.rb +4 -22
- data/sample/color_scheme_na.rb +4 -12
- data/sample/enzymes.rb +78 -0
- data/sample/goslim.rb +5 -13
- data/sample/psortplot_html.rb +4 -12
- data/test/data/blast/2.2.15.blastp.m7 +876 -0
- data/test/data/embl/AB090716.embl.rel89 +63 -0
- data/test/data/fasta/example1.txt +75 -0
- data/test/data/fasta/example2.txt +21 -0
- data/test/data/iprscan/merged.raw +32 -0
- data/test/data/iprscan/merged.txt +74 -0
- data/test/data/soft/GDS100_partial.soft +92 -0
- data/test/data/soft/GSE3457_family_partial.soft +874 -0
- data/test/functional/bio/io/test_ensembl.rb +103 -0
- data/test/functional/bio/io/test_soapwsdl.rb +5 -17
- data/test/unit/bio/appl/bl2seq/test_report.rb +2 -2
- data/test/unit/bio/appl/blast/test_report.rb +3 -16
- data/test/unit/bio/appl/blast/test_xmlparser.rb +4 -16
- data/test/unit/bio/appl/genscan/test_report.rb +3 -16
- data/test/unit/bio/appl/hmmer/test_report.rb +3 -16
- data/test/unit/bio/appl/iprscan/test_report.rb +338 -0
- data/test/unit/bio/appl/mafft/test_report.rb +63 -0
- data/test/unit/bio/appl/sosui/test_report.rb +3 -16
- data/test/unit/bio/appl/targetp/test_report.rb +3 -16
- data/test/unit/bio/appl/test_blast.rb +3 -16
- data/test/unit/bio/appl/test_fasta.rb +4 -16
- data/test/unit/bio/appl/test_pts1.rb +140 -0
- data/test/unit/bio/appl/tmhmm/test_report.rb +3 -16
- data/test/unit/bio/data/test_aa.rb +4 -17
- data/test/unit/bio/data/test_codontable.rb +3 -16
- data/test/unit/bio/data/test_na.rb +3 -3
- data/test/unit/bio/db/embl/test_common.rb +3 -16
- data/test/unit/bio/db/embl/test_embl.rb +3 -16
- data/test/unit/bio/db/embl/test_embl_rel89.rb +219 -0
- data/test/unit/bio/db/embl/test_sptr.rb +1548 -41
- data/test/unit/bio/db/embl/test_uniprot.rb +3 -16
- data/test/unit/bio/db/kegg/test_genes.rb +3 -16
- data/test/unit/bio/db/pdb/test_pdb.rb +7 -24
- data/test/unit/bio/db/test_aaindex.rb +2 -2
- data/test/unit/bio/db/test_fasta.rb +3 -16
- data/test/unit/bio/db/test_gff.rb +3 -16
- data/test/unit/bio/db/test_lasergene.rb +95 -0
- data/test/unit/bio/db/test_newick.rb +56 -0
- data/test/unit/bio/db/test_nexus.rb +360 -0
- data/test/unit/bio/db/test_prosite.rb +5 -18
- data/test/unit/bio/db/test_rebase.rb +11 -25
- data/test/unit/bio/db/test_soft.rb +138 -0
- data/test/unit/bio/io/test_ddbjxml.rb +5 -17
- data/test/unit/bio/io/test_ensembl.rb +109 -0
- data/test/unit/bio/io/test_fastacmd.rb +3 -16
- data/test/unit/bio/io/test_flatfile.rb +237 -0
- data/test/unit/bio/io/test_soapwsdl.rb +4 -17
- data/test/unit/bio/sequence/test_aa.rb +3 -3
- data/test/unit/bio/sequence/test_common.rb +3 -16
- data/test/unit/bio/sequence/test_compat.rb +3 -16
- data/test/unit/bio/sequence/test_na.rb +29 -3
- data/test/unit/bio/shell/plugin/test_seq.rb +8 -8
- data/test/unit/bio/test_alignment.rb +16 -27
- data/test/unit/bio/test_command.rb +242 -25
- data/test/unit/bio/test_db.rb +3 -16
- data/test/unit/bio/test_feature.rb +4 -16
- data/test/unit/bio/test_location.rb +4 -16
- data/test/unit/bio/test_map.rb +230 -0
- data/test/unit/bio/test_pathway.rb +4 -16
- data/test/unit/bio/test_reference.rb +2 -2
- data/test/unit/bio/test_sequence.rb +7 -19
- data/test/unit/bio/test_shell.rb +3 -16
- data/test/unit/bio/test_tree.rb +593 -0
- data/test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb +299 -0
- data/test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb +103 -0
- data/test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb +240 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb +100 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb +75 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb +73 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb +53 -0
- data/test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb +104 -0
- data/test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb +83 -0
- data/test/unit/bio/util/restriction_enzyme/test_analysis.rb +246 -0
- data/test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb +44 -0
- data/test/unit/bio/util/restriction_enzyme/test_double_stranded.rb +115 -0
- data/test/unit/bio/util/restriction_enzyme/test_single_strand.rb +147 -0
- data/test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb +147 -0
- data/test/unit/bio/util/restriction_enzyme/test_string_formatting.rb +60 -0
- data/test/unit/bio/util/test_color_scheme.rb +6 -18
- data/test/unit/bio/util/test_contingency_table.rb +6 -18
- data/test/unit/bio/util/test_restriction_enzyme.rb +42 -0
- data/test/unit/bio/util/test_sirna.rb +3 -16
- metadata +228 -169
- data/doc/BioRuby.rd.ja +0 -225
- data/doc/Design.rd.ja +0 -341
- data/doc/TODO.rd.ja +0 -138
- data/lib/bio/appl/fasta/format6.rb +0 -37
- data/lib/bio/db/kegg/cell.rb +0 -88
- data/lib/bio/db/kegg/ko.rb +0 -178
- data/lib/bio/shell/rails/Rakefile +0 -10
- data/lib/bio/shell/rails/app/controllers/application.rb +0 -4
- data/lib/bio/shell/rails/app/controllers/shell_controller.rb +0 -94
- data/lib/bio/shell/rails/app/helpers/application_helper.rb +0 -3
- data/lib/bio/shell/rails/app/models/shell_connection.rb +0 -30
- data/lib/bio/shell/rails/app/views/layouts/shell.rhtml +0 -37
- data/lib/bio/shell/rails/app/views/shell/history.rhtml +0 -5
- data/lib/bio/shell/rails/app/views/shell/index.rhtml +0 -2
- data/lib/bio/shell/rails/app/views/shell/show.rhtml +0 -13
- data/lib/bio/shell/rails/config/boot.rb +0 -19
- data/lib/bio/shell/rails/config/database.yml +0 -85
- data/lib/bio/shell/rails/config/environment.rb +0 -53
- data/lib/bio/shell/rails/config/environments/development.rb +0 -19
- data/lib/bio/shell/rails/config/environments/production.rb +0 -19
- data/lib/bio/shell/rails/config/environments/test.rb +0 -19
- data/lib/bio/shell/rails/config/routes.rb +0 -19
- data/lib/bio/shell/rails/doc/README_FOR_APP +0 -2
- data/lib/bio/shell/rails/public/404.html +0 -8
- data/lib/bio/shell/rails/public/500.html +0 -8
- data/lib/bio/shell/rails/public/dispatch.cgi +0 -10
- data/lib/bio/shell/rails/public/dispatch.fcgi +0 -24
- data/lib/bio/shell/rails/public/dispatch.rb +0 -10
- data/lib/bio/shell/rails/public/favicon.ico +0 -0
- data/lib/bio/shell/rails/public/images/rails.png +0 -0
- data/lib/bio/shell/rails/public/index.html +0 -277
- data/lib/bio/shell/rails/public/javascripts/controls.js +0 -750
- data/lib/bio/shell/rails/public/javascripts/dragdrop.js +0 -584
- data/lib/bio/shell/rails/public/javascripts/effects.js +0 -854
- data/lib/bio/shell/rails/public/javascripts/prototype.js +0 -1785
- data/lib/bio/shell/rails/public/robots.txt +0 -1
- data/lib/bio/shell/rails/public/stylesheets/main.css +0 -187
- data/lib/bio/shell/rails/script/about +0 -3
- data/lib/bio/shell/rails/script/breakpointer +0 -3
- data/lib/bio/shell/rails/script/console +0 -3
- data/lib/bio/shell/rails/script/destroy +0 -3
- data/lib/bio/shell/rails/script/generate +0 -3
- data/lib/bio/shell/rails/script/performance/benchmarker +0 -3
- data/lib/bio/shell/rails/script/performance/profiler +0 -3
- data/lib/bio/shell/rails/script/plugin +0 -3
- data/lib/bio/shell/rails/script/process/reaper +0 -3
- data/lib/bio/shell/rails/script/process/spawner +0 -3
- data/lib/bio/shell/rails/script/process/spinner +0 -3
- data/lib/bio/shell/rails/script/runner +0 -3
- data/lib/bio/shell/rails/script/server +0 -42
- data/lib/bio/shell/rails/test/test_helper.rb +0 -28
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#
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# bio/util/restriction_enzyme/single_strand_complement.rb - Single strand restriction enzyme sequence in complement orientation
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#
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# Author:: Trevor Wennblom <mailto:trevor@corevx.com>
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# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
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# License:: The Ruby License
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# $Id: single_strand_complement.rb,v 1.5 2007/07/16 19:28:48 k Exp $
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#
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require 'bio/util/restriction_enzyme'
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12
|
+
|
13
|
+
module Bio
|
14
|
+
class RestrictionEnzyme
|
15
|
+
|
16
|
+
# A single strand of restriction enzyme sequence pattern with a 3' to 5' orientation.
|
17
|
+
#
|
18
|
+
class SingleStrandComplement < SingleStrand
|
19
|
+
# Orientation of the strand, 3' to 5'
|
20
|
+
def orientation; [3, 5]; end
|
21
|
+
end # SingleStrandComplement
|
22
|
+
end # RestrictionEnzyme
|
23
|
+
end # Bio
|
@@ -0,0 +1,111 @@
|
|
1
|
+
#
|
2
|
+
# bio/util/restriction_enzyme/string_formatting.rb - Useful functions for string manipulation
|
3
|
+
#
|
4
|
+
# Author:: Trevor Wennblom <mailto:trevor@corevx.com>
|
5
|
+
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
|
6
|
+
# License:: The Ruby License
|
7
|
+
#
|
8
|
+
# $Id: string_formatting.rb,v 1.6 2007/07/16 19:28:48 k Exp $
|
9
|
+
#
|
10
|
+
|
11
|
+
require 'bio/util/restriction_enzyme'
|
12
|
+
|
13
|
+
module Bio
|
14
|
+
class RestrictionEnzyme
|
15
|
+
|
16
|
+
module StringFormatting
|
17
|
+
include CutSymbol
|
18
|
+
extend CutSymbol
|
19
|
+
|
20
|
+
# Return the sequence with spacing for alignment. Does not add whitespace
|
21
|
+
# around cut symbols.
|
22
|
+
#
|
23
|
+
# Example:
|
24
|
+
# pattern = 'n^ng^arraxt^n'
|
25
|
+
# add_spacing( pattern ) # => "n^n g^a r r a x t^n"
|
26
|
+
#
|
27
|
+
# ---
|
28
|
+
# *Arguments*
|
29
|
+
# * +seq+: sequence with cut symbols
|
30
|
+
# * +cs+: (_optional_) Cut symbol along the string. The reason this is
|
31
|
+
# definable outside of CutSymbol is that this is a utility function used
|
32
|
+
# to form vertical and horizontal cuts such as:
|
33
|
+
#
|
34
|
+
# a|t g c
|
35
|
+
# +---+
|
36
|
+
# t a c|g
|
37
|
+
# *Returns*:: +String+ sequence with single character distance between bases
|
38
|
+
def add_spacing( seq, cs = cut_symbol )
|
39
|
+
str = ''
|
40
|
+
flag = false
|
41
|
+
seq.each_byte do |c|
|
42
|
+
c = c.chr
|
43
|
+
if c == cs
|
44
|
+
str += c
|
45
|
+
flag = false
|
46
|
+
elsif flag
|
47
|
+
str += ' ' + c
|
48
|
+
else
|
49
|
+
str += c
|
50
|
+
flag = true
|
51
|
+
end
|
52
|
+
end
|
53
|
+
str
|
54
|
+
end
|
55
|
+
|
56
|
+
# Remove extraneous nucleic acid wildcards ('n' padding) from the
|
57
|
+
# left and right sides
|
58
|
+
#
|
59
|
+
# ---
|
60
|
+
# *Arguments*
|
61
|
+
# * +s+: sequence with extraneous 'n' padding
|
62
|
+
# *Returns*:: +String+ sequence without 'n' padding on the sides
|
63
|
+
def strip_padding( s )
|
64
|
+
if s[0].chr == 'n'
|
65
|
+
s =~ %r{(n+)(.+)}
|
66
|
+
s = $2
|
67
|
+
end
|
68
|
+
if s[-1].chr == 'n'
|
69
|
+
s =~ %r{(.+?)(n+)$}
|
70
|
+
s = $1
|
71
|
+
end
|
72
|
+
s
|
73
|
+
end
|
74
|
+
|
75
|
+
# Remove extraneous nucleic acid wildcards ('n' padding) from the
|
76
|
+
# left and right sides and remove cut symbols
|
77
|
+
#
|
78
|
+
# ---
|
79
|
+
# *Arguments*
|
80
|
+
# * +s+: sequence with extraneous 'n' padding and cut symbols
|
81
|
+
# *Returns*:: +String+ sequence without 'n' padding on the sides or cut symbols
|
82
|
+
def strip_cuts_and_padding( s )
|
83
|
+
strip_padding( s.tr(cut_symbol, '') )
|
84
|
+
end
|
85
|
+
|
86
|
+
# Return the 'n' padding on the left side of the strand
|
87
|
+
#
|
88
|
+
# ---
|
89
|
+
# *Arguments*
|
90
|
+
# * +s+: sequence with extraneous 'n' padding on the left side of the strand
|
91
|
+
# *Returns*:: +String+ the 'n' padding from the left side
|
92
|
+
def left_padding( s )
|
93
|
+
s =~ %r{^n+}
|
94
|
+
ret = $&
|
95
|
+
ret ? ret : '' # Don't pass nil values
|
96
|
+
end
|
97
|
+
|
98
|
+
# Return the 'n' padding on the right side of the strand
|
99
|
+
#
|
100
|
+
# ---
|
101
|
+
# *Arguments*
|
102
|
+
# * +s+: sequence with extraneous 'n' padding on the right side of the strand
|
103
|
+
# *Returns*:: +String+ the 'n' padding from the right side
|
104
|
+
def right_padding( s )
|
105
|
+
s =~ %r{n+$}
|
106
|
+
ret = $&
|
107
|
+
ret ? ret : '' # Don't pass nil values
|
108
|
+
end
|
109
|
+
end # StringFormatting
|
110
|
+
end # RestrictionEnzyme
|
111
|
+
end # Bio
|
data/lib/bio/util/sirna.rb
CHANGED
@@ -3,9 +3,9 @@
|
|
3
3
|
#
|
4
4
|
# Copyright:: Copyright (C) 2004, 2005
|
5
5
|
# Itoshi NIKAIDO <dritoshi@gmail.com>
|
6
|
-
# License::
|
6
|
+
# License:: The Ruby License
|
7
7
|
#
|
8
|
-
# $Id: sirna.rb,v 1.
|
8
|
+
# $Id: sirna.rb,v 1.11 2007/04/05 23:35:41 trevor Exp $
|
9
9
|
#
|
10
10
|
# == Bio::SiRNA - Designing siRNA.
|
11
11
|
#
|
@@ -38,24 +38,6 @@
|
|
38
38
|
# * Angela Reynolds et al. Rational siRNA design for RNA interference.
|
39
39
|
# Nature Biotech. 2004 22: 326-330.
|
40
40
|
#
|
41
|
-
#--
|
42
|
-
#
|
43
|
-
# This library is free software; you can redistribute it and/or
|
44
|
-
# modify it under the terms of the GNU Lesser General Public
|
45
|
-
# License as published by the Free Software Foundation; either
|
46
|
-
# version 2 of the License, or (at your option) any later version.
|
47
|
-
#
|
48
|
-
# This library is distributed in the hope that it will be useful,
|
49
|
-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
50
|
-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
51
|
-
# Lesser General Public License for more details.
|
52
|
-
#
|
53
|
-
# You should have received a copy of the GNU Lesser General Public
|
54
|
-
# License along with this library; if not, write to the Free Software
|
55
|
-
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
56
|
-
#
|
57
|
-
#++
|
58
|
-
#
|
59
41
|
|
60
42
|
require 'bio/sequence'
|
61
43
|
|
@@ -96,8 +78,8 @@ module Bio
|
|
96
78
|
one_third = target.size * 1 / 3
|
97
79
|
start_pos = @target_size - one_third - 1
|
98
80
|
remain_seq = target.subseq(start_pos, @target_size - 2)
|
99
|
-
|
100
|
-
return false if
|
81
|
+
au_number = remain_seq.scan(/[AU]/i).size
|
82
|
+
return false if au_number < 5
|
101
83
|
|
102
84
|
return true
|
103
85
|
end
|
data/sample/color_scheme_na.rb
CHANGED
@@ -13,19 +13,11 @@
|
|
13
13
|
# % ruby color_scheme_na.rb seq.fna > colored-seq-fna.html
|
14
14
|
#
|
15
15
|
#
|
16
|
-
# Copyright (C) 2005
|
16
|
+
# Copyright:: Copyright (C) 2005
|
17
|
+
# Mitsuteru C. Nakao <n@bioruby.org>
|
18
|
+
# License:: The Ruby License
|
17
19
|
#
|
18
|
-
#
|
19
|
-
# it under the terms of the GNU General Public License as published by
|
20
|
-
# the Free Software Foundation; either version 2 of the License, or
|
21
|
-
# (at your option) any later version.
|
22
|
-
#
|
23
|
-
# This program is distributed in the hope that it will be useful,
|
24
|
-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
25
|
-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
26
|
-
# GNU General Public License for more details.
|
27
|
-
#
|
28
|
-
# $Id: color_scheme_na.rb,v 1.1 2005/10/31 07:39:13 nakao Exp $
|
20
|
+
# $Id: color_scheme_na.rb,v 1.3 2007/04/05 23:35:42 trevor Exp $
|
29
21
|
#
|
30
22
|
|
31
23
|
require 'bio'
|
data/sample/enzymes.rb
ADDED
@@ -0,0 +1,78 @@
|
|
1
|
+
#!/usr/bin/env ruby
|
2
|
+
#
|
3
|
+
# enzymes.rb - cut input file using enzyme on command line
|
4
|
+
#
|
5
|
+
# Copyright (C) 2006 Pjotr Prins <p@bioruby.org> and Trevor Wennblom <trevor@corevx.com>
|
6
|
+
#
|
7
|
+
# This program is free software; you can redistribute it and/or modify
|
8
|
+
# it under the terms of the GNU General Public License as published by
|
9
|
+
# the Free Software Foundation; either version 2 of the License, or
|
10
|
+
# (at your option) any later version.
|
11
|
+
#
|
12
|
+
# This program is distributed in the hope that it will be useful,
|
13
|
+
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
14
|
+
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
15
|
+
# GNU General Public License for more details.
|
16
|
+
#
|
17
|
+
# $Id: enzymes.rb,v 1.1 2006/03/03 15:31:06 pjotr Exp $
|
18
|
+
#
|
19
|
+
|
20
|
+
require 'bio/io/flatfile'
|
21
|
+
require 'bio/util/restriction_enzyme'
|
22
|
+
|
23
|
+
include Bio
|
24
|
+
|
25
|
+
usage = <<USAGE
|
26
|
+
|
27
|
+
Usage: enzymes.rb enzyme1 [enzyme2] infiles
|
28
|
+
|
29
|
+
Examples:
|
30
|
+
|
31
|
+
Output the primary sequences cut using both BstYI and MseI:
|
32
|
+
|
33
|
+
./enzymes.rb BstYI MseI *.seq
|
34
|
+
|
35
|
+
or using the actual formats
|
36
|
+
|
37
|
+
./enzymes.rb "r^gatcy" "t^taa" *.seq
|
38
|
+
|
39
|
+
USAGE
|
40
|
+
|
41
|
+
if ARGV.size < 2
|
42
|
+
print usage
|
43
|
+
exit 1
|
44
|
+
end
|
45
|
+
|
46
|
+
enzyme1 = ARGV.shift
|
47
|
+
# ---- Fetch enzyme2 if it is not a file
|
48
|
+
arg2 = ARGV[0]
|
49
|
+
if arg2 and !File.exist?(arg2)
|
50
|
+
enzyme2 = ARGV.shift
|
51
|
+
end
|
52
|
+
|
53
|
+
re1 = Bio::RestrictionEnzyme::DoubleStranded.new(enzyme1)
|
54
|
+
puts "Enzyme #{enzyme1}: " + re1.primary.with_cut_symbols # e.g. r^gatcy
|
55
|
+
if (enzyme2)
|
56
|
+
re2 = Bio::RestrictionEnzyme::DoubleStranded.new(enzyme2)
|
57
|
+
puts "Enzyme #{enzyme2}: " + re2.primary.with_cut_symbols # e.g. t^taa
|
58
|
+
end
|
59
|
+
|
60
|
+
ARGV.each do | fn |
|
61
|
+
ff = Bio::FlatFile.auto(fn)
|
62
|
+
ff.each_entry do |entry|
|
63
|
+
seq = Bio::Sequence::NA.new(entry.seq)
|
64
|
+
# puts seq.inspect
|
65
|
+
seq.cut_with_enzyme(enzyme1).each do | frag1 |
|
66
|
+
frag = frag1
|
67
|
+
if enzyme2
|
68
|
+
seq = Bio::Sequence::NA.new(frag1.primary)
|
69
|
+
frags2 = seq.cut_with_enzyme(enzyme2)
|
70
|
+
next if frags2.size == 0
|
71
|
+
frag = frags2.shift # pick up first fragment
|
72
|
+
end
|
73
|
+
print '> '+entry.definition+"\n"
|
74
|
+
print frag.primary,"\n"
|
75
|
+
end
|
76
|
+
end
|
77
|
+
end
|
78
|
+
|
data/sample/goslim.rb
CHANGED
@@ -10,24 +10,16 @@
|
|
10
10
|
# % R < mgi.R
|
11
11
|
# % gv mgi.pdf
|
12
12
|
#
|
13
|
-
#
|
13
|
+
# Copyright:: Copyright (C) 2003
|
14
|
+
# Mitsuteru C. Nakao <n@bioruby.org>
|
15
|
+
# License:: The Ruby License
|
14
16
|
#
|
15
|
-
#
|
16
|
-
# it under the terms of the GNU General Public License as published by
|
17
|
-
# the Free Software Foundation; either version 2 of the License, or
|
18
|
-
# (at your option) any later version.
|
19
|
-
#
|
20
|
-
# This program is distributed in the hope that it will be useful,
|
21
|
-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
22
|
-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
23
|
-
# GNU General Public License for more details.
|
24
|
-
#
|
25
|
-
# $Id: goslim.rb,v 1.3 2003/05/13 10:45:42 n Exp $
|
17
|
+
# $Id: goslim.rb,v 1.5 2007/04/05 23:35:42 trevor Exp $
|
26
18
|
#
|
27
19
|
|
28
20
|
|
29
21
|
|
30
|
-
SCRIPT_VERSION = '$Id: goslim.rb,v 1.
|
22
|
+
SCRIPT_VERSION = '$Id: goslim.rb,v 1.5 2007/04/05 23:35:42 trevor Exp $'
|
31
23
|
|
32
24
|
USAGE = "${__FILE__} - GO slim
|
33
25
|
Usage:
|
data/sample/psortplot_html.rb
CHANGED
@@ -11,19 +11,11 @@
|
|
11
11
|
# % ruby psortplot_html.rb path:eco00010
|
12
12
|
# % cat eco00010_psort2.html
|
13
13
|
#
|
14
|
-
# Copyright (C) 2005
|
14
|
+
# Copyright:: Copyright (C) 2005
|
15
|
+
# Mitsuteru C. Nakao <n@bioruby.org>
|
16
|
+
# License:: The Ruby License
|
15
17
|
#
|
16
|
-
#
|
17
|
-
# it under the terms of the GNU General Public License as published by
|
18
|
-
# the Free Software Foundation; either version 2 of the License, or
|
19
|
-
# (at your option) any later version.
|
20
|
-
#
|
21
|
-
# This program is distributed in the hope that it will be useful,
|
22
|
-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
23
|
-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
24
|
-
# GNU General Public License for more details.
|
25
|
-
#
|
26
|
-
# $Id: psortplot_html.rb,v 1.1 2005/10/12 02:10:11 nakao Exp $
|
18
|
+
# $Id: psortplot_html.rb,v 1.3 2007/04/05 23:35:42 trevor Exp $
|
27
19
|
#
|
28
20
|
|
29
21
|
require 'bio'
|
@@ -0,0 +1,876 @@
|
|
1
|
+
<?xml version="1.0"?>
|
2
|
+
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
|
3
|
+
<BlastOutput>
|
4
|
+
<BlastOutput_program>blastp</BlastOutput_program>
|
5
|
+
<BlastOutput_version>blastp 2.2.15 [Oct-15-2006]</BlastOutput_version>
|
6
|
+
<BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
|
7
|
+
<BlastOutput_db>p53_barbu.fasta</BlastOutput_db>
|
8
|
+
<BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID>
|
9
|
+
<BlastOutput_query-def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</BlastOutput_query-def>
|
10
|
+
<BlastOutput_query-len>393</BlastOutput_query-len>
|
11
|
+
<BlastOutput_param>
|
12
|
+
<Parameters>
|
13
|
+
<Parameters_matrix>BLOSUM62</Parameters_matrix>
|
14
|
+
<Parameters_expect>10</Parameters_expect>
|
15
|
+
<Parameters_gap-open>11</Parameters_gap-open>
|
16
|
+
<Parameters_gap-extend>1</Parameters_gap-extend>
|
17
|
+
<Parameters_filter>F</Parameters_filter>
|
18
|
+
</Parameters>
|
19
|
+
</BlastOutput_param>
|
20
|
+
<BlastOutput_iterations>
|
21
|
+
<Iteration>
|
22
|
+
<Iteration_iter-num>1</Iteration_iter-num>
|
23
|
+
<Iteration_query-ID>lcl|1_0</Iteration_query-ID>
|
24
|
+
<Iteration_query-def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</Iteration_query-def>
|
25
|
+
<Iteration_query-len>393</Iteration_query-len>
|
26
|
+
<Iteration_hits>
|
27
|
+
<Hit>
|
28
|
+
<Hit_num>1</Hit_num>
|
29
|
+
<Hit_id>gnl|BL_ORD_ID|13</Hit_id>
|
30
|
+
<Hit_def>P53_HUMAN P04637 Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13).</Hit_def>
|
31
|
+
<Hit_accession>13</Hit_accession>
|
32
|
+
<Hit_len>393</Hit_len>
|
33
|
+
<Hit_hsps>
|
34
|
+
<Hsp>
|
35
|
+
<Hsp_num>1</Hsp_num>
|
36
|
+
<Hsp_bit-score>755.362</Hsp_bit-score>
|
37
|
+
<Hsp_score>1949</Hsp_score>
|
38
|
+
<Hsp_evalue>0</Hsp_evalue>
|
39
|
+
<Hsp_query-from>1</Hsp_query-from>
|
40
|
+
<Hsp_query-to>393</Hsp_query-to>
|
41
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
42
|
+
<Hsp_hit-to>393</Hsp_hit-to>
|
43
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
44
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
45
|
+
<Hsp_identity>366</Hsp_identity>
|
46
|
+
<Hsp_positive>366</Hsp_positive>
|
47
|
+
<Hsp_align-len>393</Hsp_align-len>
|
48
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
49
|
+
<Hsp_hseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_hseq>
|
50
|
+
<Hsp_midline>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDE SWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_midline>
|
51
|
+
</Hsp>
|
52
|
+
</Hit_hsps>
|
53
|
+
</Hit>
|
54
|
+
<Hit>
|
55
|
+
<Hit_num>2</Hit_num>
|
56
|
+
<Hit_id>gnl|BL_ORD_ID|6</Hit_id>
|
57
|
+
<Hit_def>P53_CERAE P13481 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
58
|
+
<Hit_accession>6</Hit_accession>
|
59
|
+
<Hit_len>393</Hit_len>
|
60
|
+
<Hit_hsps>
|
61
|
+
<Hsp>
|
62
|
+
<Hsp_num>1</Hsp_num>
|
63
|
+
<Hsp_bit-score>730.324</Hsp_bit-score>
|
64
|
+
<Hsp_score>1884</Hsp_score>
|
65
|
+
<Hsp_evalue>0</Hsp_evalue>
|
66
|
+
<Hsp_query-from>1</Hsp_query-from>
|
67
|
+
<Hsp_query-to>393</Hsp_query-to>
|
68
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
69
|
+
<Hsp_hit-to>393</Hsp_hit-to>
|
70
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
71
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
72
|
+
<Hsp_identity>353</Hsp_identity>
|
73
|
+
<Hsp_positive>357</Hsp_positive>
|
74
|
+
<Hsp_align-len>393</Hsp_align-len>
|
75
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
76
|
+
<Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPHMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
|
77
|
+
<Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP HELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
|
78
|
+
</Hsp>
|
79
|
+
</Hit_hsps>
|
80
|
+
</Hit>
|
81
|
+
<Hit>
|
82
|
+
<Hit_num>3</Hit_num>
|
83
|
+
<Hit_id>gnl|BL_ORD_ID|17</Hit_id>
|
84
|
+
<Hit_def>P53_MACMU P56424 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
85
|
+
<Hit_accession>17</Hit_accession>
|
86
|
+
<Hit_len>393</Hit_len>
|
87
|
+
<Hit_hsps>
|
88
|
+
<Hsp>
|
89
|
+
<Hsp_num>1</Hsp_num>
|
90
|
+
<Hsp_bit-score>729.169</Hsp_bit-score>
|
91
|
+
<Hsp_score>1881</Hsp_score>
|
92
|
+
<Hsp_evalue>0</Hsp_evalue>
|
93
|
+
<Hsp_query-from>1</Hsp_query-from>
|
94
|
+
<Hsp_query-to>393</Hsp_query-to>
|
95
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
96
|
+
<Hsp_hit-to>393</Hsp_hit-to>
|
97
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
98
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
99
|
+
<Hsp_identity>352</Hsp_identity>
|
100
|
+
<Hsp_positive>357</Hsp_positive>
|
101
|
+
<Hsp_align-len>393</Hsp_align-len>
|
102
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
103
|
+
<Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
|
104
|
+
<Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
|
105
|
+
</Hsp>
|
106
|
+
</Hit_hsps>
|
107
|
+
</Hit>
|
108
|
+
<Hit>
|
109
|
+
<Hit_num>4</Hit_num>
|
110
|
+
<Hit_id>gnl|BL_ORD_ID|16</Hit_id>
|
111
|
+
<Hit_def>P53_MACFU P61260 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
112
|
+
<Hit_accession>16</Hit_accession>
|
113
|
+
<Hit_len>393</Hit_len>
|
114
|
+
<Hit_hsps>
|
115
|
+
<Hsp>
|
116
|
+
<Hsp_num>1</Hsp_num>
|
117
|
+
<Hsp_bit-score>729.169</Hsp_bit-score>
|
118
|
+
<Hsp_score>1881</Hsp_score>
|
119
|
+
<Hsp_evalue>0</Hsp_evalue>
|
120
|
+
<Hsp_query-from>1</Hsp_query-from>
|
121
|
+
<Hsp_query-to>393</Hsp_query-to>
|
122
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
123
|
+
<Hsp_hit-to>393</Hsp_hit-to>
|
124
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
125
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
126
|
+
<Hsp_identity>352</Hsp_identity>
|
127
|
+
<Hsp_positive>357</Hsp_positive>
|
128
|
+
<Hsp_align-len>393</Hsp_align-len>
|
129
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
130
|
+
<Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
|
131
|
+
<Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
|
132
|
+
</Hsp>
|
133
|
+
</Hit_hsps>
|
134
|
+
</Hit>
|
135
|
+
<Hit>
|
136
|
+
<Hit_num>5</Hit_num>
|
137
|
+
<Hit_id>gnl|BL_ORD_ID|15</Hit_id>
|
138
|
+
<Hit_def>P53_MACFA P56423 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
139
|
+
<Hit_accession>15</Hit_accession>
|
140
|
+
<Hit_len>393</Hit_len>
|
141
|
+
<Hit_hsps>
|
142
|
+
<Hsp>
|
143
|
+
<Hsp_num>1</Hsp_num>
|
144
|
+
<Hsp_bit-score>729.169</Hsp_bit-score>
|
145
|
+
<Hsp_score>1881</Hsp_score>
|
146
|
+
<Hsp_evalue>0</Hsp_evalue>
|
147
|
+
<Hsp_query-from>1</Hsp_query-from>
|
148
|
+
<Hsp_query-to>393</Hsp_query-to>
|
149
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
150
|
+
<Hsp_hit-to>393</Hsp_hit-to>
|
151
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
152
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
153
|
+
<Hsp_identity>352</Hsp_identity>
|
154
|
+
<Hsp_positive>357</Hsp_positive>
|
155
|
+
<Hsp_align-len>393</Hsp_align-len>
|
156
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
157
|
+
<Hsp_hseq>MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD</Hsp_hseq>
|
158
|
+
<Hsp_midline>MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDE SWPLSSSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD</Hsp_midline>
|
159
|
+
</Hsp>
|
160
|
+
</Hit_hsps>
|
161
|
+
</Hit>
|
162
|
+
<Hit>
|
163
|
+
<Hit_num>6</Hit_num>
|
164
|
+
<Hit_id>gnl|BL_ORD_ID|18</Hit_id>
|
165
|
+
<Hit_def>P53_MARMO O36006 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
166
|
+
<Hit_accession>18</Hit_accession>
|
167
|
+
<Hit_len>391</Hit_len>
|
168
|
+
<Hit_hsps>
|
169
|
+
<Hsp>
|
170
|
+
<Hsp_num>1</Hsp_num>
|
171
|
+
<Hsp_bit-score>659.448</Hsp_bit-score>
|
172
|
+
<Hsp_score>1700</Hsp_score>
|
173
|
+
<Hsp_evalue>0</Hsp_evalue>
|
174
|
+
<Hsp_query-from>1</Hsp_query-from>
|
175
|
+
<Hsp_query-to>393</Hsp_query-to>
|
176
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
177
|
+
<Hsp_hit-to>391</Hsp_hit-to>
|
178
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
179
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
180
|
+
<Hsp_identity>323</Hsp_identity>
|
181
|
+
<Hsp_positive>338</Hsp_positive>
|
182
|
+
<Hsp_gaps>2</Hsp_gaps>
|
183
|
+
<Hsp_align-len>393</Hsp_align-len>
|
184
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
185
|
+
<Hsp_hseq>MEEAQSDLSIEPPLSQETFSDLWNLLPENNVLSPVLSPPMDDLLLSSEDVENWF--DKGPDEALQMSAAPAPKAPTPAASTLAAPSPATSWPLSSSVPSQNTYPGVYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSECTTIHYNYMCNSSCMGGMNRRPILTIITLEGSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKRGEPCPEPPPRSTKRALPNGTSSSPQPKKKPLDGEYFTLKIRGRARFEMFQELNEALELKDAQAEKEPGESRPHPSYLKSKKGQSTSRHKKIIFKREGPDSD</Hsp_hseq>
|
186
|
+
<Hsp_midline>MEE QSD S+EPPLSQETFSDLW LLPENNVLSP+ S MDDL+LS +D+E WF D GPDE SWPLSSSVPSQ TY G YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGS+CTTIHYNYMCNSSCMGGMNRRPILTIITLE SSGNLLGRNSFEVRVCACPGRDRRTEEEN RK+GEP E PP STKRALPN TSSSPQPKKKPLDGEYFTL+IRGR RFEMF+ELNEALELKDAQA KEPG SR H S+LKSKKGQSTSRHKK++FK EGPDSD</Hsp_midline>
|
187
|
+
</Hsp>
|
188
|
+
</Hit_hsps>
|
189
|
+
</Hit>
|
190
|
+
<Hit>
|
191
|
+
<Hit_num>7</Hit_num>
|
192
|
+
<Hit_id>gnl|BL_ORD_ID|25</Hit_id>
|
193
|
+
<Hit_def>P53_RABIT Q95330 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
194
|
+
<Hit_accession>25</Hit_accession>
|
195
|
+
<Hit_len>391</Hit_len>
|
196
|
+
<Hit_hsps>
|
197
|
+
<Hsp>
|
198
|
+
<Hsp_num>1</Hsp_num>
|
199
|
+
<Hsp_bit-score>648.277</Hsp_bit-score>
|
200
|
+
<Hsp_score>1671</Hsp_score>
|
201
|
+
<Hsp_evalue>0</Hsp_evalue>
|
202
|
+
<Hsp_query-from>1</Hsp_query-from>
|
203
|
+
<Hsp_query-to>393</Hsp_query-to>
|
204
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
205
|
+
<Hsp_hit-to>391</Hsp_hit-to>
|
206
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
207
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
208
|
+
<Hsp_identity>322</Hsp_identity>
|
209
|
+
<Hsp_positive>338</Hsp_positive>
|
210
|
+
<Hsp_gaps>4</Hsp_gaps>
|
211
|
+
<Hsp_align-len>394</Hsp_align-len>
|
212
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTS-SSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
213
|
+
<Hsp_hseq>MEESQSDLSLEPPLSQETFSDLWKLLPENNLLTTSLNPPVDDL-LSAEDVANWLNEDP--EEGLRVPAAPAPEAPAPAAPALAAPAPATSWPLSSSVPSQKTYHGNYGFRLGFLHSGTAKSVTCTYSPCLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPELPPGSSKRALPTTTTDSSPQTKKKPLDGEYFILKIRGRERFEMFRELNEALELKDAQAEKEPGGSRAHSSYLKAKKGQSTSRHKKPMFKREGPDSD</Hsp_hseq>
|
214
|
+
<Hsp_midline>MEE QSD S+EPPLSQETFSDLWKLLPENN+L+ + +DDL LS +D+ W EDP +E SWPLSSSVPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP ELPPGS+KRALP T+ SSPQ KKKPLDGEYF L+IRGRERFEMFRELNEALELKDAQA KEPGGSRAHSS+LK+KKGQSTSRHKK MFK EGPDSD</Hsp_midline>
|
215
|
+
</Hsp>
|
216
|
+
</Hit_hsps>
|
217
|
+
</Hit>
|
218
|
+
<Hit>
|
219
|
+
<Hit_num>8</Hit_num>
|
220
|
+
<Hit_id>gnl|BL_ORD_ID|9</Hit_id>
|
221
|
+
<Hit_def>P53_DELLE Q8SPZ3 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
222
|
+
<Hit_accession>9</Hit_accession>
|
223
|
+
<Hit_len>387</Hit_len>
|
224
|
+
<Hit_hsps>
|
225
|
+
<Hsp>
|
226
|
+
<Hsp_num>1</Hsp_num>
|
227
|
+
<Hsp_bit-score>635.95</Hsp_bit-score>
|
228
|
+
<Hsp_score>1639</Hsp_score>
|
229
|
+
<Hsp_evalue>0</Hsp_evalue>
|
230
|
+
<Hsp_query-from>1</Hsp_query-from>
|
231
|
+
<Hsp_query-to>393</Hsp_query-to>
|
232
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
233
|
+
<Hsp_hit-to>387</Hsp_hit-to>
|
234
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
235
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
236
|
+
<Hsp_identity>318</Hsp_identity>
|
237
|
+
<Hsp_positive>332</Hsp_positive>
|
238
|
+
<Hsp_gaps>8</Hsp_gaps>
|
239
|
+
<Hsp_align-len>394</Hsp_align-len>
|
240
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
241
|
+
<Hsp_hseq>MEESQAELGVEPPLSQETFSDLWKLLPENNLLSSELSPAVDDLLLSPEDVANWL--DERPDEAPQMPEPPAPAAPTPAAPAPAT-----SWPLSSFVPSQKTYPGSYGFHLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERCSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSNGNLLGRNSFEVRVCACPGRDRRTEEENFHKKGQSCPELPTGSAKRALPTGTSSSPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGESRAHSSHLKSKKGQSPSRHKKLMFKREGPDSD</Hsp_hseq>
|
242
|
+
<Hsp_midline>MEE Q++ VEPPLSQETFSDLWKLLPENN+LS S A+DDL+LSP+D+ W D PDE SWPLSS VPSQKTY GSYGF LGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHERCSD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDS+GNLLGRNSFEVRVCACPGRDRRTEEEN KKG+ ELP GS KRALP TSSSP KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG SRAHSSHLKSKKGQS SRHKKLMFK EGPDSD</Hsp_midline>
|
243
|
+
</Hsp>
|
244
|
+
</Hit_hsps>
|
245
|
+
</Hit>
|
246
|
+
<Hit>
|
247
|
+
<Hit_num>9</Hit_num>
|
248
|
+
<Hit_id>gnl|BL_ORD_ID|23</Hit_id>
|
249
|
+
<Hit_def>P53_PIG Q9TUB2 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
250
|
+
<Hit_accession>23</Hit_accession>
|
251
|
+
<Hit_len>386</Hit_len>
|
252
|
+
<Hit_hsps>
|
253
|
+
<Hsp>
|
254
|
+
<Hsp_num>1</Hsp_num>
|
255
|
+
<Hsp_bit-score>607.446</Hsp_bit-score>
|
256
|
+
<Hsp_score>1565</Hsp_score>
|
257
|
+
<Hsp_evalue>4.50259e-177</Hsp_evalue>
|
258
|
+
<Hsp_query-from>1</Hsp_query-from>
|
259
|
+
<Hsp_query-to>393</Hsp_query-to>
|
260
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
261
|
+
<Hsp_hit-to>386</Hsp_hit-to>
|
262
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
263
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
264
|
+
<Hsp_identity>308</Hsp_identity>
|
265
|
+
<Hsp_positive>326</Hsp_positive>
|
266
|
+
<Hsp_gaps>11</Hsp_gaps>
|
267
|
+
<Hsp_align-len>395</Hsp_align-len>
|
268
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSP-LPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
269
|
+
<Hsp_hseq>MEESQSELGVEPPLSQETFSDLWKLLPENNLLSSELSLAAVNDLLLSP--VTNWLDENPDDASRVPAPPAATAPAPAAPAPAT-------SWPLSSFVPSQKTYPGSYDFRLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDASGNLLGRNSFEVRVCACPGRDRRTEEENFLKKGQSCPEPPPGSTKRALPTSTSSSPVQKKKPLDGEYFTLQIRGRERFEMFRELNDALELKDAQTARESGENRAHSSHLKSKKGQSPSRHKKPMFKREGPDSD</Hsp_hseq>
|
270
|
+
<Hsp_midline>MEE QS+ VEPPLSQETFSDLWKLLPENN+LS L A++DL+LSP + W E+P SWPLSS VPSQKTY GSY FRLGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLED+SGNLLGRNSFEVRVCACPGRDRRTEEEN KKG+ E PPGSTKRALP +TSSSP KKKPLDGEYFTLQIRGRERFEMFRELN+ALELKDAQ +E G +RAHSSHLKSKKGQS SRHKK MFK EGPDSD</Hsp_midline>
|
271
|
+
</Hsp>
|
272
|
+
</Hit_hsps>
|
273
|
+
</Hit>
|
274
|
+
<Hit>
|
275
|
+
<Hit_num>10</Hit_num>
|
276
|
+
<Hit_id>gnl|BL_ORD_ID|4</Hit_id>
|
277
|
+
<Hit_def>P53_CANFA Q29537 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
278
|
+
<Hit_accession>4</Hit_accession>
|
279
|
+
<Hit_len>381</Hit_len>
|
280
|
+
<Hit_hsps>
|
281
|
+
<Hsp>
|
282
|
+
<Hsp_num>1</Hsp_num>
|
283
|
+
<Hsp_bit-score>604.749</Hsp_bit-score>
|
284
|
+
<Hsp_score>1558</Hsp_score>
|
285
|
+
<Hsp_evalue>2.91849e-176</Hsp_evalue>
|
286
|
+
<Hsp_query-from>1</Hsp_query-from>
|
287
|
+
<Hsp_query-to>393</Hsp_query-to>
|
288
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
289
|
+
<Hsp_hit-to>381</Hsp_hit-to>
|
290
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
291
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
292
|
+
<Hsp_identity>304</Hsp_identity>
|
293
|
+
<Hsp_positive>325</Hsp_positive>
|
294
|
+
<Hsp_gaps>14</Hsp_gaps>
|
295
|
+
<Hsp_align-len>394</Hsp_align-len>
|
296
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
297
|
+
<Hsp_hseq>MEESQSELNIDPPLSQETFSELWNLLPENNVLSSELCPAVDELLL-PESVVNWLDEDSDD------------APRMPATSAPTAPGPAPSWPLSSSVPSPKTYPGTYGFRLGFLHSGTAKSVTWTYSPLLNKLFCQLAKTCPVQLWVSSPPPPNTCVRAMAIYKKSEFVTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAKYLDDRNTFRHSVVVPYEPPEVGSDYTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNVLGRNSFEVRVCACPGRDRRTEEENFHKKGEPCPEPPPGSTKRALPPSTSSSPPQKKKPLDGEYFTLQIRGRERYEMFRNLNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKLMFKREGLDSD</Hsp_hseq>
|
298
|
+
<Hsp_midline>MEE QS+ +++PPLSQETFS+LW LLPENNVLS A+D+L+L P+ + W ED SWPLSSSVPS KTY G+YGFRLGFLHSGTAKSVT TYSP LNK+FCQLAKTCPVQLWV S PPP T VRAMAIYK+S+ +TEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR +YLDDRNTFRHSVVVPYEPPEVGSD TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGN+LGRNSFEVRVCACPGRDRRTEEEN KKGEP E PPGSTKRALP +TSSSP KKKPLDGEYFTLQIRGRER+EMFR LNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKKLMFK EG DSD</Hsp_midline>
|
299
|
+
</Hsp>
|
300
|
+
</Hit_hsps>
|
301
|
+
</Hit>
|
302
|
+
<Hit>
|
303
|
+
<Hit_num>11</Hit_num>
|
304
|
+
<Hit_id>gnl|BL_ORD_ID|11</Hit_id>
|
305
|
+
<Hit_def>P53_FELCA P41685 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
306
|
+
<Hit_accession>11</Hit_accession>
|
307
|
+
<Hit_len>386</Hit_len>
|
308
|
+
<Hit_hsps>
|
309
|
+
<Hsp>
|
310
|
+
<Hsp_num>1</Hsp_num>
|
311
|
+
<Hsp_bit-score>602.823</Hsp_bit-score>
|
312
|
+
<Hsp_score>1553</Hsp_score>
|
313
|
+
<Hsp_evalue>1.10903e-175</Hsp_evalue>
|
314
|
+
<Hsp_query-from>1</Hsp_query-from>
|
315
|
+
<Hsp_query-to>393</Hsp_query-to>
|
316
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
317
|
+
<Hsp_hit-to>386</Hsp_hit-to>
|
318
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
319
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
320
|
+
<Hsp_identity>303</Hsp_identity>
|
321
|
+
<Hsp_positive>325</Hsp_positive>
|
322
|
+
<Hsp_gaps>9</Hsp_gaps>
|
323
|
+
<Hsp_align-len>394</Hsp_align-len>
|
324
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
325
|
+
<Hsp_hseq>MQEPPLELTIEPPLSQETFSELWNLLPENNVLSSELSSAMNELPLS-EDVANWL--DEAPDDASGMSAVPAPAAPAPATPAPAI-----SWPLSSFVPSQKTYPGAYGFHLGFLQSGTAKSVTCTYSPPLNKLFCQLAKTCPVQLWVRSPPPPGTCVRAMAIYKKSEFMTEVVRRCPHHERCPDSSDGLAPPQHLIRVEGNLHAKYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPIITIITLEDSNGKLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPEPPPGSTKRALPPSTSSTPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKPMLKREGLDSD</Hsp_hseq>
|
326
|
+
<Hsp_midline>M+EP + ++EPPLSQETFS+LW LLPENNVLS S AM++L LS +D+ W D PD+ SWPLSS VPSQKTY G+YGF LGFL SGTAKSVTCTYSP LNK+FCQLAKTCPVQLWV S PPPGT VRAMAIYK+S+ MTEVVRRCPHHERC DS DGLAPPQHLIRVEGNL +YLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPI+TIITLEDS+G LLGRNSFEVRVCACPGRDRRTEEEN RKKGEP E PPGSTKRALP +TSS+P KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKK M K EG DSD</Hsp_midline>
|
327
|
+
</Hsp>
|
328
|
+
</Hit_hsps>
|
329
|
+
</Hit>
|
330
|
+
<Hit>
|
331
|
+
<Hit_num>12</Hit_num>
|
332
|
+
<Hit_id>gnl|BL_ORD_ID|5</Hit_id>
|
333
|
+
<Hit_def>P53_CAVPO Q9WUR6 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
334
|
+
<Hit_accession>5</Hit_accession>
|
335
|
+
<Hit_len>391</Hit_len>
|
336
|
+
<Hit_hsps>
|
337
|
+
<Hsp>
|
338
|
+
<Hsp_num>1</Hsp_num>
|
339
|
+
<Hsp_bit-score>600.512</Hsp_bit-score>
|
340
|
+
<Hsp_score>1547</Hsp_score>
|
341
|
+
<Hsp_evalue>5.50404e-175</Hsp_evalue>
|
342
|
+
<Hsp_query-from>1</Hsp_query-from>
|
343
|
+
<Hsp_query-to>393</Hsp_query-to>
|
344
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
345
|
+
<Hsp_hit-to>391</Hsp_hit-to>
|
346
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
347
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
348
|
+
<Hsp_identity>297</Hsp_identity>
|
349
|
+
<Hsp_positive>319</Hsp_positive>
|
350
|
+
<Hsp_gaps>2</Hsp_gaps>
|
351
|
+
<Hsp_align-len>393</Hsp_align-len>
|
352
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
353
|
+
<Hsp_hseq>MEEPHSDLSIEPPLSQETFSDLWKLLPENNVLSDSLSPPMDHLLLSPEEVASWLGENPDGD--GHVSAAPVSEAPTSAGPALVAPAPATSWPLSSSVPSHKPYRGSYGFEVHFLKSGTAKSVTCTYSPGLNKLFCQLAKTCPVQVWVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLHAEYVDDRTTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGKLLGRDSFEVRVCACPGRDRRTEEENFRKKGGLCPEPTPGNIKRALPTSTSSSPQPKKKPLDAEYFTLKIRGRKNFEILREINEALEFKDAQTEKEPGESRPHSSYPKSKKGQSTSCHKKLMFKREGLDSD</Hsp_hseq>
|
354
|
+
<Hsp_midline>MEEP SD S+EPPLSQETFSDLWKLLPENNVLS S MD L+LSP+++ W E+P D SWPLSSSVPS K Y+GSYGF + FL SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNL EY+DDR TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSG LLGR+SFEVRVCACPGRDRRTEEEN RKKG E PG+ KRALP +TSSSPQPKKKPLD EYFTL+IRGR+ FE+ RE+NEALE KDAQ KEPG SR HSS+ KSKKGQSTS HKKLMFK EG DSD</Hsp_midline>
|
355
|
+
</Hsp>
|
356
|
+
</Hit_hsps>
|
357
|
+
</Hit>
|
358
|
+
<Hit>
|
359
|
+
<Hit_num>13</Hit_num>
|
360
|
+
<Hit_id>gnl|BL_ORD_ID|27</Hit_id>
|
361
|
+
<Hit_def>P53_SHEEP P51664 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
362
|
+
<Hit_accession>27</Hit_accession>
|
363
|
+
<Hit_len>382</Hit_len>
|
364
|
+
<Hit_hsps>
|
365
|
+
<Hsp>
|
366
|
+
<Hsp_num>1</Hsp_num>
|
367
|
+
<Hsp_bit-score>595.89</Hsp_bit-score>
|
368
|
+
<Hsp_score>1535</Hsp_score>
|
369
|
+
<Hsp_evalue>1.35569e-173</Hsp_evalue>
|
370
|
+
<Hsp_query-from>1</Hsp_query-from>
|
371
|
+
<Hsp_query-to>393</Hsp_query-to>
|
372
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
373
|
+
<Hsp_hit-to>382</Hsp_hit-to>
|
374
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
375
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
376
|
+
<Hsp_identity>299</Hsp_identity>
|
377
|
+
<Hsp_positive>320</Hsp_positive>
|
378
|
+
<Hsp_gaps>13</Hsp_gaps>
|
379
|
+
<Hsp_align-len>394</Hsp_align-len>
|
380
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
381
|
+
<Hsp_hseq>MEESQAELGVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDLLPYSEDVVTWLDECPNE------------APQMPEPPAQAALAPATSWPLSSFVPSQKTYPGNYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRSPHHERSSDYSDGLAPPQHLIRVEGNLRAEYFDDRNTFRHSVVVPYESPEIESECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSRGNLLGRSSFEVRVCACPGRDRRTEEENFRKKGQSCPEPPPGSTKRALPSSTSSSPQQKKKPLDGEYFTLQIRGRKRFEMFRELNEALELMDAQAGREPGESRAHSSHLKSKKGPSPSCHKKPMLKREGPDSD</Hsp_hseq>
|
382
|
+
<Hsp_midline>MEE Q++ VEPPLSQETFSDLW LLPENN+LS S +DDL+ +D+ W E P SWPLSS VPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRR PHHER SD SDGLAPPQHLIRVEGNLR EY DDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGR+SFEVRVCACPGRDRRTEEEN RKKG+ E PPGSTKRALP++TSSSPQ KKKPLDGEYFTLQIRGR+RFEMFRELNEALEL DAQAG+EPG SRAHSSHLKSKKG S S HKK M K EGPDSD</Hsp_midline>
|
383
|
+
</Hsp>
|
384
|
+
</Hit_hsps>
|
385
|
+
</Hit>
|
386
|
+
<Hit>
|
387
|
+
<Hit_num>14</Hit_num>
|
388
|
+
<Hit_id>gnl|BL_ORD_ID|19</Hit_id>
|
389
|
+
<Hit_def>P53_MESAU Q00366 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
390
|
+
<Hit_accession>19</Hit_accession>
|
391
|
+
<Hit_len>396</Hit_len>
|
392
|
+
<Hit_hsps>
|
393
|
+
<Hsp>
|
394
|
+
<Hsp_num>1</Hsp_num>
|
395
|
+
<Hsp_bit-score>594.349</Hsp_bit-score>
|
396
|
+
<Hsp_score>1531</Hsp_score>
|
397
|
+
<Hsp_evalue>3.94446e-173</Hsp_evalue>
|
398
|
+
<Hsp_query-from>1</Hsp_query-from>
|
399
|
+
<Hsp_query-to>393</Hsp_query-to>
|
400
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
401
|
+
<Hsp_hit-to>396</Hsp_hit-to>
|
402
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
403
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
404
|
+
<Hsp_identity>300</Hsp_identity>
|
405
|
+
<Hsp_positive>324</Hsp_positive>
|
406
|
+
<Hsp_gaps>7</Hsp_gaps>
|
407
|
+
<Hsp_align-len>398</Hsp_align-len>
|
408
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQ-AMDDLMLSPDDIEQWFTEDPGP----DEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
409
|
+
<Hsp_hseq>MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVAGWL-EDPGEALQGSAAAAAPAAPAAEDPVAETPAPVASAPATPWPLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVSSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDGLAPPQHLIRVEGNMHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPQPKRKTLDGEYFTLKIRGQERFKMFQELNEALELKDAQALKASEDSGAHSSYLKSKKGQSASRLKKLMIKREGPDSD</Hsp_hseq>
|
410
|
+
<Hsp_midline>MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LPS ++++L LS +++ W EDPG WPLSSSVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ DGLAPPQHLIRVEGN+ EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP ELPP S KRALP NTSSSPQPK+K LDGEYFTL+IRG+ERF+MF+ELNEALELKDAQA K S AHSS+LKSKKGQS SR KKLM K EGPDSD</Hsp_midline>
|
411
|
+
</Hsp>
|
412
|
+
</Hit_hsps>
|
413
|
+
</Hit>
|
414
|
+
<Hit>
|
415
|
+
<Hit_num>15</Hit_num>
|
416
|
+
<Hit_id>gnl|BL_ORD_ID|8</Hit_id>
|
417
|
+
<Hit_def>P53_CRIGR O09185 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
418
|
+
<Hit_accession>8</Hit_accession>
|
419
|
+
<Hit_len>393</Hit_len>
|
420
|
+
<Hit_hsps>
|
421
|
+
<Hsp>
|
422
|
+
<Hsp_num>1</Hsp_num>
|
423
|
+
<Hsp_bit-score>594.349</Hsp_bit-score>
|
424
|
+
<Hsp_score>1531</Hsp_score>
|
425
|
+
<Hsp_evalue>3.94446e-173</Hsp_evalue>
|
426
|
+
<Hsp_query-from>1</Hsp_query-from>
|
427
|
+
<Hsp_query-to>393</Hsp_query-to>
|
428
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
429
|
+
<Hsp_hit-to>393</Hsp_hit-to>
|
430
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
431
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
432
|
+
<Hsp_identity>296</Hsp_identity>
|
433
|
+
<Hsp_positive>321</Hsp_positive>
|
434
|
+
<Hsp_gaps>2</Hsp_gaps>
|
435
|
+
<Hsp_align-len>394</Hsp_align-len>
|
436
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQ-AMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
437
|
+
<Hsp_hseq>MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVTGWLEDSGGALQGVAAAAASTAEDPVTETPAPVASAPATPWPLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVNSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDSLAPPQHLIRVEGNLHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPPPKKKTLDGEYFTLKIRGHERFKMFQELNEALELKDAQASKGSEDNGAHSSYLKSKKGQSASRLKKLMIKREGPDSD</Hsp_hseq>
|
438
|
+
<Hsp_midline>MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LPS ++++L LS +++ W + G + WPLSSSVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV+STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ D LAPPQHLIRVEGNL EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP ELPP S KRALP NTSSSP PKKK LDGEYFTL+IRG ERF+MF+ELNEALELKDAQA K + AHSS+LKSKKGQS SR KKLM K EGPDSD</Hsp_midline>
|
439
|
+
</Hsp>
|
440
|
+
</Hit_hsps>
|
441
|
+
</Hit>
|
442
|
+
<Hit>
|
443
|
+
<Hit_num>16</Hit_num>
|
444
|
+
<Hit_id>gnl|BL_ORD_ID|2</Hit_id>
|
445
|
+
<Hit_def>P53_BOVIN P67939 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
446
|
+
<Hit_accession>2</Hit_accession>
|
447
|
+
<Hit_len>386</Hit_len>
|
448
|
+
<Hit_hsps>
|
449
|
+
<Hsp>
|
450
|
+
<Hsp_num>1</Hsp_num>
|
451
|
+
<Hsp_bit-score>588.956</Hsp_bit-score>
|
452
|
+
<Hsp_score>1517</Hsp_score>
|
453
|
+
<Hsp_evalue>1.65722e-171</Hsp_evalue>
|
454
|
+
<Hsp_query-from>1</Hsp_query-from>
|
455
|
+
<Hsp_query-to>393</Hsp_query-to>
|
456
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
457
|
+
<Hsp_hit-to>386</Hsp_hit-to>
|
458
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
459
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
460
|
+
<Hsp_identity>299</Hsp_identity>
|
461
|
+
<Hsp_positive>318</Hsp_positive>
|
462
|
+
<Hsp_gaps>9</Hsp_gaps>
|
463
|
+
<Hsp_align-len>394</Hsp_align-len>
|
464
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
465
|
+
<Hsp_hseq>MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWLDECPNE-------APQMPEPSAPAAPPPATPAPATSWPLSSFVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD</Hsp_hseq>
|
466
|
+
<Hsp_midline>MEE Q++ +VEPPLSQETFSDLW LLPENN+LS S +DDL L D+ W E P SWPLSS VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+ E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA G+EPG SRAHSSHLKSKK S S HKK M K EGPDSD</Hsp_midline>
|
467
|
+
</Hsp>
|
468
|
+
</Hit_hsps>
|
469
|
+
</Hit>
|
470
|
+
<Hit>
|
471
|
+
<Hit_num>17</Hit_num>
|
472
|
+
<Hit_id>gnl|BL_ORD_ID|1</Hit_id>
|
473
|
+
<Hit_def>P53_BOSIN P67938 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
474
|
+
<Hit_accession>1</Hit_accession>
|
475
|
+
<Hit_len>386</Hit_len>
|
476
|
+
<Hit_hsps>
|
477
|
+
<Hsp>
|
478
|
+
<Hsp_num>1</Hsp_num>
|
479
|
+
<Hsp_bit-score>588.956</Hsp_bit-score>
|
480
|
+
<Hsp_score>1517</Hsp_score>
|
481
|
+
<Hsp_evalue>1.65722e-171</Hsp_evalue>
|
482
|
+
<Hsp_query-from>1</Hsp_query-from>
|
483
|
+
<Hsp_query-to>393</Hsp_query-to>
|
484
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
485
|
+
<Hsp_hit-to>386</Hsp_hit-to>
|
486
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
487
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
488
|
+
<Hsp_identity>299</Hsp_identity>
|
489
|
+
<Hsp_positive>318</Hsp_positive>
|
490
|
+
<Hsp_gaps>9</Hsp_gaps>
|
491
|
+
<Hsp_align-len>394</Hsp_align-len>
|
492
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
493
|
+
<Hsp_hseq>MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWLDECPNE-------APQMPEPSAPAAPPPATPAPATSWPLSSFVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD</Hsp_hseq>
|
494
|
+
<Hsp_midline>MEE Q++ +VEPPLSQETFSDLW LLPENN+LS S +DDL L D+ W E P SWPLSS VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+ E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA G+EPG SRAHSSHLKSKK S S HKK M K EGPDSD</Hsp_midline>
|
495
|
+
</Hsp>
|
496
|
+
</Hit_hsps>
|
497
|
+
</Hit>
|
498
|
+
<Hit>
|
499
|
+
<Hit_num>18</Hit_num>
|
500
|
+
<Hit_id>gnl|BL_ORD_ID|26</Hit_id>
|
501
|
+
<Hit_def>P53_RAT P10361 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
502
|
+
<Hit_accession>26</Hit_accession>
|
503
|
+
<Hit_len>391</Hit_len>
|
504
|
+
<Hit_hsps>
|
505
|
+
<Hsp>
|
506
|
+
<Hsp_num>1</Hsp_num>
|
507
|
+
<Hsp_bit-score>575.859</Hsp_bit-score>
|
508
|
+
<Hsp_score>1483</Hsp_score>
|
509
|
+
<Hsp_evalue>1.4518e-167</Hsp_evalue>
|
510
|
+
<Hsp_query-from>1</Hsp_query-from>
|
511
|
+
<Hsp_query-to>393</Hsp_query-to>
|
512
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
513
|
+
<Hsp_hit-to>391</Hsp_hit-to>
|
514
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
515
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
516
|
+
<Hsp_identity>295</Hsp_identity>
|
517
|
+
<Hsp_positive>317</Hsp_positive>
|
518
|
+
<Hsp_gaps>8</Hsp_gaps>
|
519
|
+
<Hsp_align-len>396</Hsp_align-len>
|
520
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPS---QAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
521
|
+
<Hsp_hseq>MEDSQSDMSIELPLSQETFSCLWKLLPPDDILPTTATGSPNSMEDLFL-PQDVAELLE---GPEEALQVSAPAAQEPGTEAPAPVAPASATP-WPLSSSVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSISLNKLFCQLAKTCPVQLWVTSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNPYAEYLDDRQTFRHSVVVPYEPPEVGSDYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEEHCPELPPGSAKRALPTSTSSSPQQKKKPLDGEYFTLKIRGRERFEMFRELNEALELKDARAAEESGDSRAHSSYPKTKKGQSTSRHKKPMIKKVGPDSD</Hsp_hseq>
|
522
|
+
<Hsp_midline>ME+ QSD S+E PLSQETFS LWKLLP +++L + +M+DL L P D+ + GP+E WPLSSSVPSQKTYQG+YGF LGFL SGTAKSV CTYS +LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGN EYLDDR TFRHSVVVPYEPPEVGSD TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK E ELPPGS KRALP +TSSSPQ KKKPLDGEYFTL+IRGRERFEMFRELNEALELKDA+A +E G SRAHSS+ K+KKGQSTSRHKK M K GPDSD</Hsp_midline>
|
523
|
+
</Hsp>
|
524
|
+
</Hit_hsps>
|
525
|
+
</Hit>
|
526
|
+
<Hit>
|
527
|
+
<Hit_num>19</Hit_num>
|
528
|
+
<Hit_id>gnl|BL_ORD_ID|20</Hit_id>
|
529
|
+
<Hit_def>P53_MOUSE P02340 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
530
|
+
<Hit_accession>20</Hit_accession>
|
531
|
+
<Hit_len>390</Hit_len>
|
532
|
+
<Hit_hsps>
|
533
|
+
<Hsp>
|
534
|
+
<Hsp_num>1</Hsp_num>
|
535
|
+
<Hsp_bit-score>574.318</Hsp_bit-score>
|
536
|
+
<Hsp_score>1479</Hsp_score>
|
537
|
+
<Hsp_evalue>4.22408e-167</Hsp_evalue>
|
538
|
+
<Hsp_query-from>1</Hsp_query-from>
|
539
|
+
<Hsp_query-to>393</Hsp_query-to>
|
540
|
+
<Hsp_hit-from>4</Hsp_hit-from>
|
541
|
+
<Hsp_hit-to>390</Hsp_hit-to>
|
542
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
543
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
544
|
+
<Hsp_identity>293</Hsp_identity>
|
545
|
+
<Hsp_positive>314</Hsp_positive>
|
546
|
+
<Hsp_gaps>6</Hsp_gaps>
|
547
|
+
<Hsp_align-len>393</Hsp_align-len>
|
548
|
+
<Hsp_qseq>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
549
|
+
<Hsp_hseq>MEESQSDISLELPLSQETFSGLWKLLPPEDIL-PSP-HCMDDLLL-PQDVEEFFE---GPSEALRVSGAPAAQDPVTETPGPVAPAPATPWPLSSFVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEVLCPELPPGSAKRALPTCTSASPPQKKKPLDGEYFTLKIRGRKRFEMFRELNEALELKDAHATEESGDSRAHSSYLKTKKGQSTSRHKKTMVKKVGPDSD</Hsp_hseq>
|
550
|
+
<Hsp_midline>MEE QSD S+E PLSQETFS LWKLLP ++L P P MDDL+L P D+E++F GP E WPLSS VPSQKTYQG+YGF LGFL SGTAKSV CTYSP LNK+FCQLAKTCPVQLWV +TPP G+RVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGNL EYL+DR TFRHSVVVPYEPPE GS+ TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK ELPPGS KRALP TS+SP KKKPLDGEYFTL+IRGR+RFEMFRELNEALELKDA A +E G SRAHSS+LK+KKGQSTSRHKK M K GPDSD</Hsp_midline>
|
551
|
+
</Hsp>
|
552
|
+
</Hit_hsps>
|
553
|
+
</Hit>
|
554
|
+
<Hit>
|
555
|
+
<Hit_num>20</Hit_num>
|
556
|
+
<Hit_id>gnl|BL_ORD_ID|28</Hit_id>
|
557
|
+
<Hit_def>P53_SPEBE Q64662 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
|
558
|
+
<Hit_accession>28</Hit_accession>
|
559
|
+
<Hit_len>314</Hit_len>
|
560
|
+
<Hit_hsps>
|
561
|
+
<Hsp>
|
562
|
+
<Hsp_num>1</Hsp_num>
|
563
|
+
<Hsp_bit-score>530.02</Hsp_bit-score>
|
564
|
+
<Hsp_score>1364</Hsp_score>
|
565
|
+
<Hsp_evalue>9.13575e-154</Hsp_evalue>
|
566
|
+
<Hsp_query-from>21</Hsp_query-from>
|
567
|
+
<Hsp_query-to>335</Hsp_query-to>
|
568
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
569
|
+
<Hsp_hit-to>313</Hsp_hit-to>
|
570
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
571
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
572
|
+
<Hsp_identity>256</Hsp_identity>
|
573
|
+
<Hsp_positive>268</Hsp_positive>
|
574
|
+
<Hsp_gaps>2</Hsp_gaps>
|
575
|
+
<Hsp_align-len>315</Hsp_align-len>
|
576
|
+
<Hsp_qseq>DLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGR</Hsp_qseq>
|
577
|
+
<Hsp_hseq>DLWNLLPENNVLSPVLSPPMDDLLLSSEDVENWF--DKGPDEALQMSAAPAPKAPTPAASTLAAPTPAISWPLSSSVPSQNTYPGVYGFRLGFIHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSESTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKRGEPCPEPPPGSTKRALPTGTNSSPQPKKKPLDGEYFTLKIRGR</Hsp_hseq>
|
578
|
+
<Hsp_midline>DLW LLPENNVLSP+ S MDDL+LS +D+E WF D GPDE SWPLSSSVPSQ TY G YGFRLGF+HSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGS+ TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RK+GEP E PPGSTKRALP T+SSPQPKKKPLDGEYFTL+IRGR</Hsp_midline>
|
579
|
+
</Hsp>
|
580
|
+
</Hit_hsps>
|
581
|
+
</Hit>
|
582
|
+
<Hit>
|
583
|
+
<Hit_num>21</Hit_num>
|
584
|
+
<Hit_id>gnl|BL_ORD_ID|12</Hit_id>
|
585
|
+
<Hit_def>P53_HORSE P79892 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
|
586
|
+
<Hit_accession>12</Hit_accession>
|
587
|
+
<Hit_len>280</Hit_len>
|
588
|
+
<Hit_hsps>
|
589
|
+
<Hsp>
|
590
|
+
<Hsp_num>1</Hsp_num>
|
591
|
+
<Hsp_bit-score>448.743</Hsp_bit-score>
|
592
|
+
<Hsp_score>1153</Hsp_score>
|
593
|
+
<Hsp_evalue>2.67666e-129</Hsp_evalue>
|
594
|
+
<Hsp_query-from>39</Hsp_query-from>
|
595
|
+
<Hsp_query-to>329</Hsp_query-to>
|
596
|
+
<Hsp_hit-from>2</Hsp_hit-from>
|
597
|
+
<Hsp_hit-to>280</Hsp_hit-to>
|
598
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
599
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
600
|
+
<Hsp_identity>227</Hsp_identity>
|
601
|
+
<Hsp_positive>238</Hsp_positive>
|
602
|
+
<Hsp_gaps>14</Hsp_gaps>
|
603
|
+
<Hsp_align-len>292</Hsp_align-len>
|
604
|
+
<Hsp_qseq>AMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFT</Hsp_qseq>
|
605
|
+
<Hsp_hseq>AVNNLLLSPD-VVNWL--DEGPDEAPRMPAAPAPLAPAPAT----------SWPLSSFVPSQKTYPGCYGFRLGFLNSGTAKSVTCTYSPTLNKLFCQLAKTCPVQLLVSSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKEEPCPEPPPRSTKRVLSSNTSSSPPQKKKPLDGEYFT</Hsp_hseq>
|
606
|
+
<Hsp_midline>A+++L+LSPD + W D GPDE SWPLSS VPSQKTY G YGFRLGFL+SGTAKSVTCTYSP LNK+FCQLAKTCPVQL V S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKK EP E PP STKR L +NTSSSP KKKPLDGEYFT</Hsp_midline>
|
607
|
+
</Hsp>
|
608
|
+
</Hit_hsps>
|
609
|
+
</Hit>
|
610
|
+
<Hit>
|
611
|
+
<Hit_num>22</Hit_num>
|
612
|
+
<Hit_id>gnl|BL_ORD_ID|10</Hit_id>
|
613
|
+
<Hit_def>P53_EQUAS Q29480 Cellular tumor antigen p53 (Tumor suppressor p53) (Fragment).</Hit_def>
|
614
|
+
<Hit_accession>10</Hit_accession>
|
615
|
+
<Hit_len>207</Hit_len>
|
616
|
+
<Hit_hsps>
|
617
|
+
<Hsp>
|
618
|
+
<Hsp_num>1</Hsp_num>
|
619
|
+
<Hsp_bit-score>374.015</Hsp_bit-score>
|
620
|
+
<Hsp_score>959</Hsp_score>
|
621
|
+
<Hsp_evalue>8.37873e-107</Hsp_evalue>
|
622
|
+
<Hsp_query-from>126</Hsp_query-from>
|
623
|
+
<Hsp_query-to>330</Hsp_query-to>
|
624
|
+
<Hsp_hit-from>1</Hsp_hit-from>
|
625
|
+
<Hsp_hit-to>206</Hsp_hit-to>
|
626
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
627
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
628
|
+
<Hsp_identity>181</Hsp_identity>
|
629
|
+
<Hsp_positive>187</Hsp_positive>
|
630
|
+
<Hsp_gaps>1</Hsp_gaps>
|
631
|
+
<Hsp_align-len>206</Hsp_align-len>
|
632
|
+
<Hsp_qseq>YSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTL</Hsp_qseq>
|
633
|
+
<Hsp_hseq>YSPALNKMFCQLAKTCPVYLRISSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTLRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKEEPCPEPPPRSTKRVLSSNTSSSPPQKEDPLDGEYFTL</Hsp_hseq>
|
634
|
+
<Hsp_midline>YSPALNKMFCQLAKTCPV L + S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSDS DGLAPPQHLIRVEGNLR EYLDDRNT RHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKK EP E PP STKR L +NTSSSP K+ PLDGEYFTL</Hsp_midline>
|
635
|
+
</Hsp>
|
636
|
+
</Hit_hsps>
|
637
|
+
</Hit>
|
638
|
+
<Hit>
|
639
|
+
<Hit_num>23</Hit_num>
|
640
|
+
<Hit_id>gnl|BL_ORD_ID|7</Hit_id>
|
641
|
+
<Hit_def>P53_CHICK P10360 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
642
|
+
<Hit_accession>7</Hit_accession>
|
643
|
+
<Hit_len>367</Hit_len>
|
644
|
+
<Hit_hsps>
|
645
|
+
<Hsp>
|
646
|
+
<Hsp_num>1</Hsp_num>
|
647
|
+
<Hsp_bit-score>355.91</Hsp_bit-score>
|
648
|
+
<Hsp_score>912</Hsp_score>
|
649
|
+
<Hsp_evalue>2.36124e-101</Hsp_evalue>
|
650
|
+
<Hsp_query-from>5</Hsp_query-from>
|
651
|
+
<Hsp_query-to>386</Hsp_query-to>
|
652
|
+
<Hsp_hit-from>4</Hsp_hit-from>
|
653
|
+
<Hsp_hit-to>364</Hsp_hit-to>
|
654
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
655
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
656
|
+
<Hsp_identity>197</Hsp_identity>
|
657
|
+
<Hsp_positive>240</Hsp_positive>
|
658
|
+
<Hsp_gaps>27</Hsp_gaps>
|
659
|
+
<Hsp_align-len>385</Hsp_align-len>
|
660
|
+
<Hsp_qseq>QSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFK</Hsp_qseq>
|
661
|
+
<Hsp_hseq>EMEPLLEPT---EVFMDLWSMLPYSMQQLPLPEDHSNWQELSPLE-----PSDPPPPPPPPPLPLAAAAPPPLNPPTPPRAAP------SPVVPSTEDYGGDFDFRVGFVEAGTAKSVTCTYSPVLNKVYCRLAKPCPVQVRVGVAPPPGSSLRAVAVYKKSEHVAEVVRRCPHHERCGGGTDGLAPAQHLIRVEGNPQARYHDDETTKRHSVVVPYEPPEVGSDCTTVLYNFMCNSSCMGGMNRRPILTILTLEGPGGQLLGRRCFEVRVCACPGRDRKIEEENFRKRGG-----AGGVAKRAMSPPTEAPEPPKKRVLNPDNEIFYLQVRGRRRYEMLKEINEALQL--AEGGSAPRPSKGRRVKV---EGPQPSCGKKLLQK</Hsp_hseq>
|
662
|
+
<Hsp_midline>+ +P +EP E F DLW +LP + PLP + LSP + DP P S VPS + Y G + FR+GF+ +GTAKSVTCTYSP LNK++C+LAK CPVQ+ V PPPG+ +RA+A+YK+S+H+ EVVRRCPHHERC +DGLAP QHLIRVEGN + Y DD T RHSVVVPYEPPEVGSDCTT+ YN+MCNSSCMGGMNRRPILTI+TLE G LLGR FEVRVCACPGRDR+ EEEN RK+G G KRA+ T + PKK+ L D E F LQ+RGR R+EM +E+NEAL+L A+ G P S+ + +G S KKL+ K</Hsp_midline>
|
663
|
+
</Hsp>
|
664
|
+
</Hit_hsps>
|
665
|
+
</Hit>
|
666
|
+
<Hit>
|
667
|
+
<Hit_num>24</Hit_num>
|
668
|
+
<Hit_id>gnl|BL_ORD_ID|21</Hit_id>
|
669
|
+
<Hit_def>P53_ONCMY P25035 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
670
|
+
<Hit_accession>21</Hit_accession>
|
671
|
+
<Hit_len>396</Hit_len>
|
672
|
+
<Hit_hsps>
|
673
|
+
<Hsp>
|
674
|
+
<Hsp_num>1</Hsp_num>
|
675
|
+
<Hsp_bit-score>343.969</Hsp_bit-score>
|
676
|
+
<Hsp_score>881</Hsp_score>
|
677
|
+
<Hsp_evalue>9.28528e-98</Hsp_evalue>
|
678
|
+
<Hsp_query-from>9</Hsp_query-from>
|
679
|
+
<Hsp_query-to>393</Hsp_query-to>
|
680
|
+
<Hsp_hit-from>7</Hsp_hit-from>
|
681
|
+
<Hsp_hit-to>396</Hsp_hit-to>
|
682
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
683
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
684
|
+
<Hsp_identity>194</Hsp_identity>
|
685
|
+
<Hsp_positive>245</Hsp_positive>
|
686
|
+
<Hsp_gaps>33</Hsp_gaps>
|
687
|
+
<Hsp_align-len>404</Hsp_align-len>
|
688
|
+
<Hsp_qseq>SVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTED----PGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHEL---PPGSTKRALPNNTSSSPQP------KKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKK---GQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
689
|
+
<Hsp_hseq>NVSLPLSQESFEDLWKM-------------NLNLVAVQPPETESWVGYDNFMMEAPLQVEFDPSLFEVSATEPAPQPSISTLDTGS-PPTSTVPTTSDYPGALGFQLRFLQSSTAKSVTCTYSPDLNKLFCQLAKTCPVQIVVDHPPPPGAVVRALAIYKKLSDVADVVRRCPHHQSTSENNEGPAPRGHLVRVEGNQRSEYMEDGNTLRHSVLVPYEPPQVGSECTTVLYNFMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEEINLKKQQETTLETKTKPAQGIKRAMKEASLPAPQPGASKKTKSSPAVSDDEIYTLQIRGKEKYEMLKKFNDSLELSELVPVADADKYRQKCLTKRVAKRDFGVGPKKRKKLLVKEEKSDSD</Hsp_hseq>
|
690
|
+
<Hsp_midline>+V PLSQE+F DLWK+ ++ + + P + E W D P + S P +S+VP+ Y G+ GF+L FL S TAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD PPPG VRA+AIYK+ + +VVRRCPHH+ S++ +G AP HL+RVEGN R EY++D NT RHSV+VPYEPP+VGS+CTT+ YN+MCNSSCMGGMNRRPILTIITLE G LLGR SFEVRVCACPGRDR+TEE NL+K+ E E P KRA+ + +PQP K P D E +TLQIRG+E++EM ++ N++LEL + + R + K G + KKL+ K E DSD</Hsp_midline>
|
691
|
+
</Hsp>
|
692
|
+
</Hit_hsps>
|
693
|
+
</Hit>
|
694
|
+
<Hit>
|
695
|
+
<Hit_num>25</Hit_num>
|
696
|
+
<Hit_id>gnl|BL_ORD_ID|0</Hit_id>
|
697
|
+
<Hit_def>P53_BARBU Q9W678 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
698
|
+
<Hit_accession>0</Hit_accession>
|
699
|
+
<Hit_len>369</Hit_len>
|
700
|
+
<Hit_hsps>
|
701
|
+
<Hsp>
|
702
|
+
<Hsp_num>1</Hsp_num>
|
703
|
+
<Hsp_bit-score>341.658</Hsp_bit-score>
|
704
|
+
<Hsp_score>875</Hsp_score>
|
705
|
+
<Hsp_evalue>4.60823e-97</Hsp_evalue>
|
706
|
+
<Hsp_query-from>92</Hsp_query-from>
|
707
|
+
<Hsp_query-to>393</Hsp_query-to>
|
708
|
+
<Hsp_hit-from>56</Hsp_hit-from>
|
709
|
+
<Hsp_hit-to>369</Hsp_hit-to>
|
710
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
711
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
712
|
+
<Hsp_identity>181</Hsp_identity>
|
713
|
+
<Hsp_positive>219</Hsp_positive>
|
714
|
+
<Hsp_gaps>12</Hsp_gaps>
|
715
|
+
<Hsp_align-len>314</Hsp_align-len>
|
716
|
+
<Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPH--HELPPGSTKRALPNNTSSSPQP---KKKPLDG----EYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAH-SSHLKSKKGQS--TSRHKKLMFKTEGPDSD</Hsp_qseq>
|
717
|
+
<Hsp_hseq>PPTASVPVATDYPGEHGFKLGFPQSGTAKSVTCTYSSDLNKLFCQLAKTCPVQMVVNVAPPQGSVIRATAIYKKSEHVAEVVRRCPHHERTPDGDGLAPAAHLIRVEGNSRALYREDDVNSRHSVVVPYEVPQLGSEFTTVLYNFMCNSSCMGGMNRRPILTIISLETHDGQLLGRRSFEVRVCACPGRDRKTEESNFRKDQETKTLDKIPSANKRSLTKDSTSSVPRPEGSKKAKLSGSSDEEIYTLQVRGKERYEMLKKINDSLELSDVVPPSEMDRYRQKLLTKGKKKDGQTPEPKRGKKLMVKDEKSDSD</Hsp_hseq>
|
718
|
+
<Hsp_midline>P ++SVP Y G +GF+LGF SGTAKSVTCTYS LNK+FCQLAKTCPVQ+ V+ PP G+ +RA AIYK+S+H+ EVVRRCPHHER D DGLAP HLIRVEGN R Y +D RHSVVVPYE P++GS+ TT+ YN+MCNSSCMGGMNRRPILTII+LE G LLGR SFEVRVCACPGRDR+TEE N RK E ++P + + ++TSS P+P KK L G E +TLQ+RG+ER+EM +++N++LEL D E R + K K GQ+ R KKLM K E DSD</Hsp_midline>
|
719
|
+
</Hsp>
|
720
|
+
</Hit_hsps>
|
721
|
+
</Hit>
|
722
|
+
<Hit>
|
723
|
+
<Hit_num>26</Hit_num>
|
724
|
+
<Hit_id>gnl|BL_ORD_ID|3</Hit_id>
|
725
|
+
<Hit_def>P53_BRARE P79734 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
726
|
+
<Hit_accession>3</Hit_accession>
|
727
|
+
<Hit_len>373</Hit_len>
|
728
|
+
<Hit_hsps>
|
729
|
+
<Hsp>
|
730
|
+
<Hsp_num>1</Hsp_num>
|
731
|
+
<Hsp_bit-score>338.576</Hsp_bit-score>
|
732
|
+
<Hsp_score>867</Hsp_score>
|
733
|
+
<Hsp_evalue>3.9011e-96</Hsp_evalue>
|
734
|
+
<Hsp_query-from>92</Hsp_query-from>
|
735
|
+
<Hsp_query-to>393</Hsp_query-to>
|
736
|
+
<Hsp_hit-from>60</Hsp_hit-from>
|
737
|
+
<Hsp_hit-to>373</Hsp_hit-to>
|
738
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
739
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
740
|
+
<Hsp_identity>181</Hsp_identity>
|
741
|
+
<Hsp_positive>215</Hsp_positive>
|
742
|
+
<Hsp_gaps>12</Hsp_gaps>
|
743
|
+
<Hsp_align-len>314</Hsp_align-len>
|
744
|
+
<Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGS-TKRALPNNTSSS---PQPKKK----PLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTS---RHKKLMFKTEG-PDSD</Hsp_qseq>
|
745
|
+
<Hsp_hseq>PPTSTVPETSDYPGDHGFRLRFPQSGTAKSVTCTYSPDLNKLFCQLAKTCPVQMVVDVAPPQGSVVRATAIYKKSEHVAEVVRRCPHHERTPDGDNLAPAGHLIRVEGNQRANYREDNITLRHSVFVPYEAPQLGAEWTTVLLNYMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEESNFKKDQETKTMAKTTTGTKRSLVKESSSATLRPEGSKKAKGSSSDEEIFTLQVRGRERYEILKKLNDSLELSDVVPASDAEKYRQKFMTKNKKENRESSEPKQGKKLMVKDEGRSDSD</Hsp_hseq>
|
746
|
+
<Hsp_midline>P +S+VP Y G +GFRL F SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD PP G+ VRA AIYK+S+H+ EVVRRCPHHER D D LAP HLIRVEGN R Y +D T RHSV VPYE P++G++ TT+ NYMCNSSCMGGMNRRPILTIITLE G LLGR SFEVRVCACPGRDR+TEE N +K E + TKR+L +SS+ P+ KK D E FTLQ+RGRER+E+ ++LN++LEL D + R K+ + +S + KKLM K EG DSD</Hsp_midline>
|
747
|
+
</Hsp>
|
748
|
+
</Hit_hsps>
|
749
|
+
</Hit>
|
750
|
+
<Hit>
|
751
|
+
<Hit_num>27</Hit_num>
|
752
|
+
<Hit_id>gnl|BL_ORD_ID|14</Hit_id>
|
753
|
+
<Hit_def>P53_ICTPU O93379 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
754
|
+
<Hit_accession>14</Hit_accession>
|
755
|
+
<Hit_len>376</Hit_len>
|
756
|
+
<Hit_hsps>
|
757
|
+
<Hsp>
|
758
|
+
<Hsp_num>1</Hsp_num>
|
759
|
+
<Hsp_bit-score>333.183</Hsp_bit-score>
|
760
|
+
<Hsp_score>853</Hsp_score>
|
761
|
+
<Hsp_evalue>1.63901e-94</Hsp_evalue>
|
762
|
+
<Hsp_query-from>10</Hsp_query-from>
|
763
|
+
<Hsp_query-to>393</Hsp_query-to>
|
764
|
+
<Hsp_hit-from>12</Hsp_hit-from>
|
765
|
+
<Hsp_hit-to>376</Hsp_hit-to>
|
766
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
767
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
768
|
+
<Hsp_identity>192</Hsp_identity>
|
769
|
+
<Hsp_positive>240</Hsp_positive>
|
770
|
+
<Hsp_gaps>41</Hsp_gaps>
|
771
|
+
<Hsp_align-len>395</Hsp_align-len>
|
772
|
+
<Hsp_qseq>VEPPLSQETFSDLW--KLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRAL---PNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDA--QAGKEPGGSRAHSSHLKSKKGQST---SRHKKLMFKTEGPDSD</Hsp_qseq>
|
773
|
+
<Hsp_hseq>VEPPDSQE-FAELWLRNLIVRDNSLWGKEEEIPDDLQEVPCDVLLSDMLQPQSS----------------------------SSPPTSTVPVTSDYPGLLNFTLHFQESSGTKSVTCTYSPDLNKLFCQLAKTCPVLMAVSSSPPPGSVLRATAVYKRSEHVAEVVRRCPHHERSNDSSDGPAPPGHLLRVEGNSRAVYQEDGNTQAHSVVVPYEPPQVGSQSTTVLYNYMCNSSCMGGMNRRPILTIITLETQDGHLLGRRTFEVRVCACPGRDRKTEESNFKKQQEPKTS-GKTLTKRSMKDPPSHPEASKKSKNSSSDDEIYTLQVRGKERYEFLKKINDGLELSDVVPPADQEKYRQKLLSKTCRKERDGAAGEPKRGKKRLVKEEKCDSD</Hsp_hseq>
|
774
|
+
<Hsp_midline>VEPP SQE F++LW L+ +N L + DDL P D+ P S P +S+VP Y G F L F S KSVTCTYSP LNK+FCQLAKTCPV + V S+PPPG+ +RA A+YK+S+H+ EVVRRCPHHER +DS DG APP HL+RVEGN R Y +D NT HSVVVPYEPP+VGS TT+ YNYMCNSSCMGGMNRRPILTIITLE G+LLGR +FEVRVCACPGRDR+TEE N +K+ EP TKR++ P++ +S + K D E +TLQ+RG+ER+E +++N+ LEL D A +E + S + ++ + R KK + K E DSD</Hsp_midline>
|
775
|
+
</Hsp>
|
776
|
+
</Hit_hsps>
|
777
|
+
</Hit>
|
778
|
+
<Hit>
|
779
|
+
<Hit_num>28</Hit_num>
|
780
|
+
<Hit_id>gnl|BL_ORD_ID|29</Hit_id>
|
781
|
+
<Hit_def>P53_TETMU Q9W679 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
782
|
+
<Hit_accession>29</Hit_accession>
|
783
|
+
<Hit_len>367</Hit_len>
|
784
|
+
<Hit_hsps>
|
785
|
+
<Hsp>
|
786
|
+
<Hsp_num>1</Hsp_num>
|
787
|
+
<Hsp_bit-score>267.7</Hsp_bit-score>
|
788
|
+
<Hsp_score>683</Hsp_score>
|
789
|
+
<Hsp_evalue>8.45682e-75</Hsp_evalue>
|
790
|
+
<Hsp_query-from>7</Hsp_query-from>
|
791
|
+
<Hsp_query-to>393</Hsp_query-to>
|
792
|
+
<Hsp_hit-from>3</Hsp_hit-from>
|
793
|
+
<Hsp_hit-to>367</Hsp_hit-to>
|
794
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
795
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
796
|
+
<Hsp_identity>159</Hsp_identity>
|
797
|
+
<Hsp_positive>220</Hsp_positive>
|
798
|
+
<Hsp_gaps>32</Hsp_gaps>
|
799
|
+
<Hsp_align-len>392</Hsp_align-len>
|
800
|
+
<Hsp_qseq>DPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKK-----KPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
801
|
+
<Hsp_hseq>EENISLPLSQDTFQDLW-----DNVSAP----PISTIQTAALENEAWPAERQMNMMCNFMDSTFNEALFNLLPEPPSRDGANSSSP---TVPVTTDYPGEYGFKLRFQKSGTAKSVTSTYSEILNKLYCQLAKTSLVEVLLGKDPPMGAVLRATAIYKKTEHVAEVVRRCPHHQ---NEDSAEHRSHLIRMEGSERAQYFEHPHTKRQSVTVPYEPPQLGSEFTTILLSFMCNSSCMGGMNRRPILTILTLETQEGIVLGRRCFEVRVCACPGRDRKTEETNSTKM---QNDAKDAKKRKSVPTPDSTTIKKSKTASSAEEDNNEVYTLQIRGRKRYEMLKKINDGLDLLE----NKPKSKATH-----RPDGPIPPSGKRLLHRGEKSDSD</Hsp_hseq>
|
802
|
+
<Hsp_midline>+ ++ PLSQ+TF DLW +NV +P + + + + E W E S P +VP Y G YGF+L F SGTAKSVT TYS LNK++CQLAKT V++ + PP G +RA AIYK+++H+ EVVRRCPHH+ + D HLIR+EG+ R +Y + +T R SV VPYEPP++GS+ TTI ++MCNSSCMGGMNRRPILTI+TLE G +LGR FEVRVCACPGRDR+TEE N K ++ ++++P S++ + K + + E +TLQIRGR+R+EM +++N+ L+L + +P H G K+L+ + E DSD</Hsp_midline>
|
803
|
+
</Hsp>
|
804
|
+
</Hit_hsps>
|
805
|
+
</Hit>
|
806
|
+
<Hit>
|
807
|
+
<Hit_num>29</Hit_num>
|
808
|
+
<Hit_id>gnl|BL_ORD_ID|22</Hit_id>
|
809
|
+
<Hit_def>P53_ORYLA P79820 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
810
|
+
<Hit_accession>22</Hit_accession>
|
811
|
+
<Hit_len>352</Hit_len>
|
812
|
+
<Hit_hsps>
|
813
|
+
<Hsp>
|
814
|
+
<Hsp_num>1</Hsp_num>
|
815
|
+
<Hsp_bit-score>262.307</Hsp_bit-score>
|
816
|
+
<Hsp_score>669</Hsp_score>
|
817
|
+
<Hsp_evalue>3.55304e-73</Hsp_evalue>
|
818
|
+
<Hsp_query-from>92</Hsp_query-from>
|
819
|
+
<Hsp_query-to>371</Hsp_query-to>
|
820
|
+
<Hsp_hit-from>77</Hsp_hit-from>
|
821
|
+
<Hsp_hit-to>351</Hsp_hit-to>
|
822
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
823
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
824
|
+
<Hsp_identity>142</Hsp_identity>
|
825
|
+
<Hsp_positive>190</Hsp_positive>
|
826
|
+
<Hsp_gaps>21</Hsp_gaps>
|
827
|
+
<Hsp_align-len>288</Hsp_align-len>
|
828
|
+
<Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPK-----KKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQA---GKEPGGSRAHSSHLKS</Hsp_qseq>
|
829
|
+
<Hsp_hseq>PPPTTVPVTTDYPGSYELELRFQKSGTAKSVTSTYSETLNKLYCQLAKTSPIEVRVSKEPPKGAILRATAVYKKTEHVADVVRRCPHHQ---NEDSVEHRSHLIRVEGSQLAQYFEDPYTKRQSVTVPYEPPQPGSEMTTILLSYMCNSSCMGGMNRRPILTILTLE-TEGLVLGRRCFEVRICACPGRDRKTEEES-RQKTQP--------KKRKVTPNTSSSKRKKSHSSGEEEDNREVFHFEVYGRERYEFLKKINDGLELLEKESKSKNKDSGMVPSSGKKLKS</Hsp_hseq>
|
830
|
+
<Hsp_midline>P ++VP Y GSY L F SGTAKSVT TYS LNK++CQLAKT P+++ V PP G +RA A+YK+++H+ +VVRRCPHH+ + D + HLIRVEG+ +Y +D T R SV VPYEPP+ GS+ TTI +YMCNSSCMGGMNRRPILTI+TLE + G +LGR FEVR+CACPGRDR+TEEE+ R+K +P KR + NTSSS + K ++ + E F ++ GRER+E +++N+ LEL + ++ K+ G + LKS</Hsp_midline>
|
831
|
+
</Hsp>
|
832
|
+
</Hit_hsps>
|
833
|
+
</Hit>
|
834
|
+
<Hit>
|
835
|
+
<Hit_num>30</Hit_num>
|
836
|
+
<Hit_id>gnl|BL_ORD_ID|24</Hit_id>
|
837
|
+
<Hit_def>P53_PLAFE O12946 Cellular tumor antigen p53 (Tumor suppressor p53).</Hit_def>
|
838
|
+
<Hit_accession>24</Hit_accession>
|
839
|
+
<Hit_len>366</Hit_len>
|
840
|
+
<Hit_hsps>
|
841
|
+
<Hsp>
|
842
|
+
<Hsp_num>1</Hsp_num>
|
843
|
+
<Hsp_bit-score>259.225</Hsp_bit-score>
|
844
|
+
<Hsp_score>661</Hsp_score>
|
845
|
+
<Hsp_evalue>3.00783e-72</Hsp_evalue>
|
846
|
+
<Hsp_query-from>92</Hsp_query-from>
|
847
|
+
<Hsp_query-to>393</Hsp_query-to>
|
848
|
+
<Hsp_hit-from>70</Hsp_hit-from>
|
849
|
+
<Hsp_hit-to>366</Hsp_hit-to>
|
850
|
+
<Hsp_query-frame>1</Hsp_query-frame>
|
851
|
+
<Hsp_hit-frame>1</Hsp_hit-frame>
|
852
|
+
<Hsp_identity>145</Hsp_identity>
|
853
|
+
<Hsp_positive>197</Hsp_positive>
|
854
|
+
<Hsp_gaps>23</Hsp_gaps>
|
855
|
+
<Hsp_align-len>311</Hsp_align-len>
|
856
|
+
<Hsp_qseq>PLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEE------NLRKKGEPHHELPPGS---TKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</Hsp_qseq>
|
857
|
+
<Hsp_hseq>PPSSTVPVVTDYPGEYGFQLRFQKSGTAKSVTSTFSELLKKLYCQLAKTSPVEVLLSKEPPQGAVLRATAVYKKTEHVADVVRRCPHHQT---EDTAEHRSHLIRLEGSQRALYFEDPHTKRQSVTVPYEPPQLGSETTAILLSFMCNSSCMGGMNRRQILTILTLETPDGLVLGRRCFEVRVCACPGRDRKTDEESSTKTPNGPKQTKKRKQAPSNSAPHTTTVMKSKSSSSAEEE----DKEVFTVLVKGRERYEIIKKINEAFE---GAAEKE----KAKNKVAVKQELPVPSSGKRLVQRGERSDSD</Hsp_hseq>
|
858
|
+
<Hsp_midline>P SS+VP Y G YGF+L F SGTAKSVT T+S L K++CQLAKT PV++ + PP G +RA A+YK+++H+ +VVRRCPHH+ D HLIR+EG+ R Y +D +T R SV VPYEPP++GS+ T I ++MCNSSCMGGMNRR ILTI+TLE G +LGR FEVRVCACPGRDR+T+EE N K+ + + P S T + + +SSS + + D E FT+ ++GRER+E+ +++NEA E A KE +A + ++ S K+L+ + E DSD</Hsp_midline>
|
859
|
+
</Hsp>
|
860
|
+
</Hit_hsps>
|
861
|
+
</Hit>
|
862
|
+
</Iteration_hits>
|
863
|
+
<Iteration_stat>
|
864
|
+
<Statistics>
|
865
|
+
<Statistics_db-num>30</Statistics_db-num>
|
866
|
+
<Statistics_db-len>11169</Statistics_db-len>
|
867
|
+
<Statistics_hsp-len>53</Statistics_hsp-len>
|
868
|
+
<Statistics_eff-space>3.25686e+06</Statistics_eff-space>
|
869
|
+
<Statistics_kappa>0.041</Statistics_kappa>
|
870
|
+
<Statistics_lambda>0.267</Statistics_lambda>
|
871
|
+
<Statistics_entropy>0.14</Statistics_entropy>
|
872
|
+
</Statistics>
|
873
|
+
</Iteration_stat>
|
874
|
+
</Iteration>
|
875
|
+
</BlastOutput_iterations>
|
876
|
+
</BlastOutput>
|