bio 1.0.0 → 1.1.0

data/test/data/embl/AB090716.embl.rel89

@@ -0,0 +1,63 @@
+ID   AB090716; SV 1; linear; genomic DNA; STD; VRT; 166 BP.
+XX
+AC   AB090716;
+XX
+DT   25-OCT-2002 (Rel. 73, Created)
+DT   14-NOV-2006 (Rel. 89, Last updated, Version 3)
+XX
+DE   Haplochromis sp. 'muzu, rukwa' LWS gene for long wavelength-sensitive
+DE   opsin, partial cds, specimen_voucher:specimen No. HT-9361.
+XX
+KW   .
+XX
+OS   Haplochromis sp. 'muzu, rukwa'
+OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
+OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
+OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes; Labroidei;
+OC   Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
+OC   Haplochromis.
+XX
+RN   [1]
+RP   1-166
+RA   Terai Y., Mayer W.E., Klein J., Tichy H., Okada N.;
+RT   ;
+RL   Submitted (26-AUG-2002) to the EMBL/GenBank/DDBJ databases.
+RL   Yohey Terai, Tokyo Institute of Technology, Graduate School of Bioscience
+RL   and Biotechnology; 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa
+RL   226-8501, Japan (E-mail:yterai@bio.titech.ac.jp, Tel:81-45-924-5744,
+RL   Fax:81-45-924-5835)
+XX
+RN   [2]
+RX   DOI; 10.1073/pnas.232561099.
+RX   PUBMED; 12438648.
+RA   Terai Y., Mayer W.E., Klein J., Tichy H., Okada N.;
+RT   "The effect of selection on a long wavelength-sensitive (LWS) opsin gene of
+RT   Lake Victoria cichlid fishes";
+RL   Proc. Natl. Acad. Sci. U.S.A. 99(24):15501-15506(2002).
+XX
+FH   Key             Location/Qualifiers
+FH
+FT   source          1..166
+FT                   /organism="Haplochromis sp. 'muzu, rukwa'"
+FT                   /mol_type="genomic DNA"
+FT                   /specimen_voucher="specimen No. HT-9361"
+FT                   /tissue_type="piece of fin"
+FT                   /db_xref="taxon:205497"
+FT   CDS             <1..>166
+FT                   /codon_start=2
+FT                   /gene="LWS"
+FT                   /product="long wavelength-sensitive opsin"
+FT                   /db_xref="UniProtKB/TrEMBL:Q8AUS6"
+FT                   /protein_id="BAC22028.1"
+FT                   /translation="FWPHGLKTSCGPDVFSGSEDPGVQSYMIVLMITCCFIPLAIIILC
+FT                   YLAVWMAIRA"
+FT   exon            1..166
+FT                   /gene="LWS"
+FT                   /product="long wavelength-sensitive opsin"
+FT                   /number=4
+XX
+SQ   Sequence 166 BP; 29 A; 42 C; 41 G; 54 T; 0 other;
+     gttctggcct catggactga agacttcctg tggacctgat gtgttcagtg gaagtgaaga        60
+     ccctggagta cagtcctaca tgattgttct catgattact tgctgtttca tccccctggc       120
+     tatcatcatc ctgtgctacc ttgctgtgtg gatggccatc cgtgct                      166
+//

data/test/data/fasta/example1.txt

@@ -0,0 +1,75 @@
+>At1g02580 mRNA (2291 bp) UTR's and CDS
+aggcgagtggttaatggagaaggaaaaccatgaggacgatggtgagggtttgccacccgaactaaatcagataaaa
+gagcaaatcgaaaaggagagatttctgcatatcaagagaaaattcgagctgagatacattccaagtgtggctactc
+atgcttcacaccatcaatcgtttgacttaaaccagcccgctgcagaggatgataatggaggagacaacaaatcact
+tttgtcgagaatgcaaaacccacttcgtcatttcagtgcctcatctgattataattcttacgaagatcaaggttat
+gttcttgatgaggatcaagattatgctcttgaagaagatgtaccattatttcttgatgaagatgtaccattattac
+caagtgtcaagcttccaattgttgagaagctaccacgatccattacatgggtcttcaccaaaagtagccagctgat
+ggctgaaagtgattctgtgattggtaagagacaaatctattatttgaatggtgaggcactagaattgagcagtgaa
+gaagatgaggaagatgaagaagaagatgaggaagaaatcaagaaagaaaaatgcgaattttctgaagatgtagacc
+gatttatatggacggttgggcaggactatggtttggatgatctggtcgtgcggcgtgctctcgccaagtacctcga
+agtggatgtttcggacatattggaaagatacaatgaactcaagcttaagaatgatggaactgctggtgaggcttct
+gatttgacatccaagacaataactactgctttccaggattttgctgatagacgtcattgccgtcgttgcatgatat
+tcgattgtcatatgcatgagaagtatgagcccgagtctagatccagcgaagacaaatctagtttgtttgaggatga
+agatagacaaccatgcagtgagcattgttacctcaaggtgaggagtgtgacagaagctgatcatgtgatggataat
+gataactctatatcaaacaagattgtggtctcagatccaaacaacactatgtggacgcctgtagagaaggatcttt
+acttgaaaggaattgagatatttgggagaaacagttgtgatgttgcattaaacatacttcgggggcttaagacgtg
+cctagagatttacaattacatgcgcgaacaagatcaatgtactatgtcattagaccttaacaaaactacacaaaga
+cacaatcaggttaccaaaaaagtatctcgaaaaagtagtaggtcggtccgcaaaaaatcgagactccgaaaatatg
+ctcgttatccgcctgctttaaagaaaacaactagtggagaagctaagttttataagcactacacaccatgcacttg
+caagtcaaaatgtggacagcaatgcccttgtttaactcacgaaaattgctgcgagaaatattgcgggtgctcaaag
+gattgcaacaatcgctttggaggatgtaattgtgcaattggccaatgcacaaatcgacaatgtccttgttttgctg
+ctaatcgtgaatgcgatcca  gatctttgtcggagttgtcctcttagctgtggagatggcactcttggtgagacacc
+agtgcaaatccaatgcaagaacatgcaattcctccttcaaaccaataaaaagattctcattggaaagtctgatgtt
+catggatggggtgcatttacatgggactctct  taaaaagaatgagtatctcggagaatatactggagaactgatca
+ctcatgatgaagctaatgagcgtgggagaatagaagatcggattggttcttcctacctctttaccttgaatgatca
+gctcgaaatcgatgctcgccgtaaaggaaacgagttcaaatttctcaatcactcagcaagacctaactgctacgcc
+aagttgatgattgtgagaggagatcagaggattggtctatttgcggagagagcaatcgaagaaggtgaggagcttt
+tcttcgactactgctatggaccagaacatgcggattggtcgcgtggtcgagaacctagaaagactggtgcttctaa
+aaggtctaaggaagcccgtccagctcgttagtttttgatctgaggagaagcagcaattcaagcagtccttttttta
+tgttatggtatatcaattaataatgtaatgctattttgtgttactaaaccaaaacttaagtttctgttttatttgt
+tttagggtgttttgtttgtatcatatgtgtcttaactttcaaagttttctttttgtatttcaatttaaaaacaatg
+tttatgttgtt
+
+>At1g65300: mRNA 837bp
+atgaagagaaagatgaagttatcgttaatagaaaacagtgtatcgaggaaaacaacattcaccaaaaggaagaaag
+ggatgacgaagaaactaaccgagctagtcactctatgtggtgttgaagcatgtgcggtcgtctatagtccgttcaa
+ctcgatcccggaggcttggccgtcaagggaaggcgttgaagacgtggtgtcgaaatttatggagttgtcggtgttg
+gaccggaccaagaagatggtggatcaagagacttttataagtcaaaggatcgccaaagaaaaagagcagctgcaga
+agctacgtgatgagaaccataattctcagattcgggagttaatgtttggttgtctcaaaggggagacgaatgtgta
+taatcttgatggaagggatcttcaagatttgagtttatatattgataagtatcttaatggtcttactcgcaggatt
+ga  gatcctTAttgagaacggtgagtcttcttcatctttacctcttcctattgttgcgaatgcagctgcaccagtcg
+gatttgatggtcctatgtttcaatatcataatcaaaatcagcaaaagccggttcaattccaatatcaggctcttta
+tgatttttatgatcagattccaaagaaaattcatggttt  taatatgaatatgaataaggattcgaatcaaagtatg
+gttttggatttgaatcaaaatcttaatgatggagaggacgagggcattccttgcatggacaacaacaactaccacc
+ccgaaatcgattgtctcgctaccgtcaccactgcccccactgatgtttgtgctcctaacatcaccaatgatctcta
+g
+
+>At1g65300: mRNA 837bp (shortened at end)
+atgaagagaaagatgaagttatcgttaatagaaaacagtgtatcgaggaaaacaacattcaccaaaaggaagaaag
+ggatgacgaagaaactaaccgagctagtcactctatgtggtgttgaagcatgtgcggtcgtctatagtccgttcaa
+ctcgatcccggaggcttggccgtcaagggaaggcgttgaagacgtggtgtcgaaatttatggagttgtcggtgttg
+gaccggaccaagaagatggtggatcaagagacttttataagtcaaaggatcgccaaagaaaaagagcagctgcaga
+agctacgtgatgagaaccataattctcagattcgggagttaatgtttggttgtctcaaaggggagacgaatgtgta
+taatcttgatggaagggatcttcaagatttgagtttatatattgataagtatcttaatggtcttactcgcaggatt
+gagatcctTAttgagaacggtgagtcttcttcatctttacctcttcctattgttgcgaatgcagctgcaccagtcg
+gatttgatggtcctatgtttcaatatcataatcaaaatcagcaaaagccggttcaattccaatatcaggctcttta
+tgatttttatgatcag
+
+
+>At1g65300: mRNA 837bp (shortened from start)
+ttcatctttacctcttcctattgttgcgaatgcagctgcaccagtcg
+gatttgatggtcctatgtttcaatatcataatcaaaatcagcaaaagccggttcaattccaatatcaggctcttta
+tgatttttatgatcagattccaaagaaaattcatggttttaatatgaatatgaataaggattcgaatcaaagtatg
+gttttggatttgaatcaaaatcttaatgatggagaggacgagggcattccttgcatggacaacaacaactaccacc
+ccgaaatcgattgtctcgctaccgtcaccactgcccccactgatgtttgtgctcctaacatcaccaatgatctcta
+g
+
+
+>At1g02580 - shortened for test - inserted cutpoint
+gattgcaacaatcgctttggaggatgtaattgtgcaattggccaatgcacaaatcgacaatgtccttgttttgctg
+ctaatcgtgaatgcgatcca  gatctttgtcggagttgtcctcttagctgtggagatggcactcttggtgagacacc
+agtgcaaatccaatgcaagaacatgcaataataaaaagattctcattggaaagtctgatgttcatggattcatggt
+tttaattggggtgcatttacatgggactctct  taaaaagaatgagtatctcggagaatatactggagaactgatca
+ctcatgatgaagctaatgagcgtgggagaatagaagatcggattggttcttcctacctctttaccttgaatgatca
+

data/test/data/fasta/example2.txt

@@ -0,0 +1,21 @@
+>At1g11545.1 68414.m01326 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative similar to endo-xyloglucan transferase GI:2244732 from [Gossypium hirsutum]
+actcacggaacaagtgtagattgcattacctctctctctctctctcttcgaaatattcga
+agtagagacaaccaATGGAGACGGAAAGGAGGATCATAACGAGCTGTTCTGCCATGACGG
+CTCTGTTCTTGTTCATGACGGCTCTAATGGCGTCGTCCTCTATCGCAGCAACACCGACAC
+AATCGTTTGAAGATAATTTCAACATTATGTGGTCTGAAAATCACTTCACGACTTCCGATG
+ATGGAGAGATCTGGAATCTTTCCTTAGATAACGACACCGGATGTGGATTTCAGACAAAGC
+ACATGTATAGATTCGGATGGTTTAGTATGAAGCTAAAGCTCGTCGGAGGCGACTCCGCCG
+GCGTCGTCACCGCTTACTACATGTGTTCGGAGAATGGGGCAGGACCGGAGAGAGACGAGA
+TAGATTTCGAATTTCTAGGGAACCGAACCGGACAGCCTTACATTATTCAGACCAATGTGT
+ATAAGAACGGAACCGGGAATCGGGAGATGCGACATTCCCTCTGGTTCGACCCGACCAAGG
+ATTATCACACCTACTCAATTCTTTGGAATAACCACCAGCTTGTGTTCTTCGTGGATAGGG
+TACCAATTCGAGTATACAAGAACAGTGATAAGGTACCAAACAACGACTTCTTCCCGAACC
+AGAAGCCGATGTACTTGTTCTCCAGCATTTGGAACGCTGACGATTGGGCTACACGTGGTG
+GTCTGGAGAAGACTGACTGGAAAAAAGCTCCATTCGTCTCTTCTTACAAGGACTTCGCCG
+TCGAAGGCTGCCGTTGGAAGGATCCATTCCCTGCATGCGTCTCTACCACAACAGAGAATT
+GGTGGGATCAGTACGACGCGTGGCATTTGTCCAAGACACAGAAGATGGATTATGCGTGGG
+TGCAGCGTAATCTCGTCGTATACGATTATTGCAAAGACAGTGAGAGGTTCCCTACTCTTC
+CTTGGGAGTGTTCCATTAGCCCTTGGGCTTAAaatcaattttgttttgagtgtattaaag
+tggaaatggtttatgtaataattttactctcttttttttggcatttcttattttgttatg
+gactatatcctctgtttatttatttaattaattatttatttagtcggctat
+

data/test/data/iprscan/merged.raw

@@ -0,0 +1,32 @@
+Q9RHD9	D44DAE8C544CB7C1	267	HMMPfam	PF00575	S1	1	55	3.3E-6	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	HMMPfam	PF00575	S1	68	142	4.1E-19	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	HMMPfam	PF00575	S1	155	228	1.8E-19	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	HMMSmart	SM00316	S1	3	55	7.1E-7	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	HMMSmart	SM00316	S1	70	142	8.1E-20	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	HMMSmart	SM00316	S1	157	228	1.5E-21	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	ProfileScan	PS50126	S1	1	55	14.869	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	ProfileScan	PS50126	S1	72	142	20.809	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	ProfileScan	PS50126	S1	159	228	22.541	T	11-Nov-2005	IPR003029	RNA binding S1	Molecular Function:RNA binding (GO:0003723)
+Q9RHD9	D44DAE8C544CB7C1	267	FPrintScan	PR00681	RIBOSOMALS1	6	27	1.5E-17	T	11-Nov-2005	IPR000110	Ribosomal protein S1	Molecular Function:RNA binding (GO:0003723), Molecular Function:structural constituent of ribosome (GO:0003735), Cellular Component:ribosome (GO:0005840), Biological Process:protein biosynthesis (GO:0006412)
+Q9RHD9	D44DAE8C544CB7C1	267	FPrintScan	PR00681	RIBOSOMALS1	85	104	1.5E-17	T	11-Nov-2005	IPR000110	Ribosomal protein S1	Molecular Function:RNA binding (GO:0003723), Molecular Function:structural constituent of ribosome (GO:0003735), Cellular Component:ribosome (GO:0005840), Biological Process:protein biosynthesis (GO:0006412)
+Q9RHD9	D44DAE8C544CB7C1	267	FPrintScan	PR00681	RIBOSOMALS1	125	143	1.5E-17	T	11-Nov-2005	IPR000110	Ribosomal protein S1	Molecular Function:RNA binding (GO:0003723), Molecular Function:structural constituent of ribosome (GO:0003735), Cellular Component:ribosome (GO:0005840), Biological Process:protein biosynthesis (GO:0006412)
+Q9RHD9	D44DAE8C544CB7C1	267	superfamily	SSF50249	Nucleic_acid_OB	3	60	1.4E-7	T	11-Nov-2005	IPR008994	Nucleic acid-binding OB-fold	Molecular Function:nucleic acid binding (GO:0003676)
+Q9RHD9	D44DAE8C544CB7C1	267	superfamily	SSF50249	Nucleic_acid_OB	61	205	6.3999999999999995E-24	T	11-Nov-2005	IPR008994	Nucleic acid-binding OB-fold	Molecular Function:nucleic acid binding (GO:0003676)
+RS16_ECOLI	F94D07049A6D489D	82	HMMTigr	TIGR00002	S16	2	81	117.16	T	11-Nov-2005	IPR000307	Ribosomal protein S16	Molecular Function:structural constituent of ribosome (GO:0003735), Cellular Component:intracellular (GO:0005622), Cellular Component:ribosome (GO:0005840), Biological Process:protein biosynthesis (GO:0006412)
+RS16_ECOLI	F94D07049A6D489D	82	superfamily	SSF54565	Ribosomal_S16	1	79	1.81E-8	T	11-Nov-2005	IPR000307	Ribosomal protein S16	Molecular Function:structural constituent of ribosome (GO:0003735), Cellular Component:intracellular (GO:0005622), Cellular Component:ribosome (GO:0005840), Biological Process:protein biosynthesis (GO:0006412)
+RS16_ECOLI	F94D07049A6D489D	82	HMMPfam	PF00886	Ribosomal_S16	8	68	2.7000000000000004E-33	T	11-Nov-2005	IPR000307	Ribosomal protein S16	Molecular Function:structural constituent of ribosome (GO:0003735), Cellular Component:intracellular (GO:0005622), Cellular Component:ribosome (GO:0005840), Biological Process:protein biosynthesis (GO:0006412)
+RS16_ECOLI	F94D07049A6D489D	82	BlastProDom	PD003791	Ribosomal_S16	10	77	4.0E-33	T	11-Nov-2005	IPR000307	Ribosomal protein S16	Molecular Function:structural constituent of ribosome (GO:0003735), Cellular Component:intracellular (GO:0005622), Cellular Component:ribosome (GO:0005840), Biological Process:protein biosynthesis (GO:0006412)
+RS16_ECOLI	F94D07049A6D489D	82	ProfileScan	PS00732	RIBOSOMAL_S16	2	11	8.0E-5	T	11-Nov-2005	IPR000307	Ribosomal protein S16	Molecular Function:structural constituent of ribosome (GO:0003735), Cellular Component:intracellular (GO:0005622), Cellular Component:ribosome (GO:0005840), Biological Process:protein biosynthesis (GO:0006412)
+Y902_MYCTU	CD84A335CCFFE6D7	446	superfamily	SSF47384	His_kin_homodim	220	292	5.89E-7	T	11-Nov-2005	IPR009082	Histidine kinase, homodimeric	
+Y902_MYCTU	CD84A335CCFFE6D7	446	HMMSmart	SM00304	HAMP	170	222	1.8E-6	T	11-Nov-2005	IPR003660	Histidine kinase, HAMP region	Molecular Function:signal transducer activity (GO:0004871), Biological Process:signal transduction (GO:0007165), Cellular Component:membrane (GO:0016020)
+Y902_MYCTU	CD84A335CCFFE6D7	446	ProfileScan	PS50885	HAMP	170	222	7.777	T	11-Nov-2005	IPR003660	Histidine kinase, HAMP region	Molecular Function:signal transducer activity (GO:0004871), Biological Process:signal transduction (GO:0007165), Cellular Component:membrane (GO:0016020)
+Y902_MYCTU	CD84A335CCFFE6D7	446	HMMPfam	PF00672	HAMP	151	219	1.1E-8	T	11-Nov-2005	IPR003660	Histidine kinase, HAMP region	Molecular Function:signal transducer activity (GO:0004871), Biological Process:signal transduction (GO:0007165), Cellular Component:membrane (GO:0016020)
+Y902_MYCTU	CD84A335CCFFE6D7	446	ProfileScan	PS50109	HIS_KIN	237	446	34.449	T	11-Nov-2005	IPR005467	Histidine kinase	Biological Process:protein amino acid phosphorylation (GO:0006468), Molecular Function:kinase activity (GO:0016301)
+Y902_MYCTU	CD84A335CCFFE6D7	446	HMMSmart	SM00388	HisKA	230	296	1.4E-12	T	11-Nov-2005	IPR003661	Histidine kinase A, N-terminal	Molecular Function:two-component sensor molecule activity (GO:0000155), Biological Process:signal transduction (GO:0007165), Cellular Component:membrane (GO:0016020)
+Y902_MYCTU	CD84A335CCFFE6D7	446	HMMPfam	PF00512	HisKA	230	296	2.4E-11	T	11-Nov-2005	IPR003661	Histidine kinase A, N-terminal	Molecular Function:two-component sensor molecule activity (GO:0000155), Biological Process:signal transduction (GO:0007165), Cellular Component:membrane (GO:0016020)
+Y902_MYCTU	CD84A335CCFFE6D7	446	HMMSmart	SM00387	HATPase_c	338	446	2.9E-24	T	11-Nov-2005	IPR003594	ATP-binding region, ATPase-like	Molecular Function:ATP binding (GO:0005524)
+Y902_MYCTU	CD84A335CCFFE6D7	446	HMMPfam	PF02518	HATPase_c	338	445	2.5E-26	T	11-Nov-2005	IPR003594	ATP-binding region, ATPase-like	Molecular Function:ATP binding (GO:0005524)
+Y902_MYCTU	CD84A335CCFFE6D7	446	FPrintScan	PR00344	BCTRLSENSOR	374	388	2.0E-12	T	11-Nov-2005	IPR004358	Histidine kinase related protein, C-terminal	Biological Process:phosphorylation (GO:0016310), Molecular Function:transferase activity, transferring phosphorus-containing groups (GO:0016772)
+Y902_MYCTU	CD84A335CCFFE6D7	446	FPrintScan	PR00344	BCTRLSENSOR	392	402	2.0E-12	T	11-Nov-2005	IPR004358	Histidine kinase related protein, C-terminal	Biological Process:phosphorylation (GO:0016310), Molecular Function:transferase activity, transferring phosphorus-containing groups (GO:0016772)
+Y902_MYCTU	CD84A335CCFFE6D7	446	FPrintScan	PR00344	BCTRLSENSOR	406	424	2.0E-12	T	11-Nov-2005	IPR004358	Histidine kinase related protein, C-terminal	Biological Process:phosphorylation (GO:0016310), Molecular Function:transferase activity, transferring phosphorus-containing groups (GO:0016772)
+Y902_MYCTU	CD84A335CCFFE6D7	446	FPrintScan	PR00344	BCTRLSENSOR	430	443	2.0E-12	T	11-Nov-2005	IPR004358	Histidine kinase related protein, C-terminal	Biological Process:phosphorylation (GO:0016310), Molecular Function:transferase activity, transferring phosphorus-containing groups (GO:0016772)

data/test/data/iprscan/merged.txt

@@ -0,0 +1,74 @@
+Sequence "Q9RHD9" crc64 checksum: D44DAE8C544CB7C1 length: 267 aa.
+
+InterPro       IPR000110      Ribosomal protein S1
+Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412)
+method         AccNumber      shortName                               location
+FPrintScan     PR00681        RIBOSOMALS1                             T[6-27] 1.5e-17 T[85-104] 1.5e-17 T[125-143] 1.5e-17
+
+InterPro       IPR003029      RNA binding S1
+Molecular Function: RNA binding (GO:0003723)
+method         AccNumber      shortName                               location
+HMMPfam        PF00575        S1                                      T[1-55] 1.3e-08 T[68-142] 1.6e-21 T[155-228] 6.8e-22
+HMMSmart       SM00316        S1                                      T[3-55] 1.2e-06 T[70-142] 1.4e-19 T[157-228] 2.6e-21
+ProfileScan    PS50126        S1                                      T[1-55] 14.869 T[72-142] 20.809 T[159-228] 22.541
+
+InterPro       IPR008994      Nucleic acid-binding OB-fold
+method         AccNumber      shortName                               location
+superfamily    SSF50249       Nucleic acid-binding proteins           T[147-257] 2.5e-24 T[59-145] 2.4e-22 T[3-58] 9.2e-14
+
+InterPro       NULL           NULL
+method         AccNumber      shortName                               location
+Coil           coil           coiled-coil                             ?[225-246]
+Seg            seg            seg                                     ?[29-40] ?[84-98] ?[222-237]
+
+Sequence "RS16_ECOLI" crc64 checksum: F94D07049A6D489D length: 82 aa.
+
+InterPro       IPR000307      Ribosomal protein S16
+Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412)
+method         AccNumber      shortName                               location
+BlastProDom    PD003791       sp_RS16_ECOLI_P02372;                   T[1-77] 3e-38
+HMMPfam        PF00886        Ribosomal_S16                           T[8-68] 1.1e-35
+HMMTigr        TIGR00002      S16                                     T[2-81] 8.8e-33
+ScanRegExp     PS00732        RIBOSOMAL_S16                           T[2-11] 8e-5
+superfamily    SSF54565       Ribosomal protein S16                   T[1-79] 9.4e-28
+
+Sequence "Y902_MYCTU" crc64 checksum: CD84A335CCFFE6D7 length: 446 aa.
+
+InterPro       IPR003594      ATP-binding region, ATPase-like
+Molecular Function: ATP binding (GO:0005524)
+method         AccNumber      shortName                               location
+HMMPfam        PF02518        HATPase_c                               T[338-445] 9.6e-29
+HMMSmart       SM00387        HATPase_c                               T[338-446] 5e-24
+
+InterPro       IPR003660      Histidine kinase, HAMP region
+Molecular Function: signal transducer activity (GO:0004871), Biological Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0016020)
+method         AccNumber      shortName                               location
+HMMPfam        PF00672        HAMP                                    T[151-219] 4.3e-11
+HMMSmart       SM00304        HAMP                                    T[170-222] 3.1e-06
+ProfileScan    PS50885        HAMP                                    T[170-222] 7.777
+
+InterPro       IPR003661      Histidine kinase A, N-terminal
+Molecular Function: two-component sensor molecule activity (GO:0000155), Biological Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0016020)
+method         AccNumber      shortName                               location
+HMMPfam        PF00512        HisKA                                   T[230-296] 9.2e-14
+HMMSmart       SM00388        HisKA                                   T[230-296] 2.4e-12
+
+InterPro       IPR004358      Bacterial sensor protein, C-terminal
+Molecular Function: two-component sensor molecule activity (GO:0000155), Biological Process: signal transduction (GO:0007165)
+method         AccNumber      shortName                               location
+FPrintScan     PR00344        BCTRLSENSOR                             T[374-388] 2e-12 T[392-402] 2e-12 T[406-424] 2e-12 T[430-443] 2e-12
+
+InterPro       IPR005467      Histidine kinase
+Biological Process: signal transduction (GO:0007165), Molecular Function: kinase activity (GO:0016301)
+method         AccNumber      shortName                               location
+ProfileScan    PS50109        HIS_KIN                                 T[237-446] 34.449
+
+InterPro       IPR009082      Histidine kinase, homodimeric
+method         AccNumber      shortName                               location
+superfamily    SSF47384       Homodimeric domain of signal transducing histidine kinase  T[220-292] 2.7e-11
+
+InterPro       NULL           NULL
+method         AccNumber      shortName                               location
+Seg            seg            seg                                     ?[44-55] ?[108-120] ?[160-173] ?[308-319] ?[400-424]
+superfamily    SSF55874       ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase  T[295-444] 4.6e-30
+

data/test/data/soft/GDS100_partial.soft

@@ -0,0 +1,92 @@
+^DATABASE = Geo
+!Database_name = Gene Expression Omnibus (GEO)
+!Database_institute = NCBI NLM NIH
+!Database_web_link = http://www.ncbi.nlm.nih.gov/projects/geo
+!Database_email = geo@ncbi.nlm.nih.gov
+!Database_ref = Nucleic Acids Res. 2005 Jan 1;33 Database Issue:D562-6
+^DATASET = GDS100
+!dataset_title = UV exposure time course (ecoli_8.0)
+!dataset_description = Time course of UV-responsive genes and their role in cellular recovery. lexA SOS-deficient strains analyzed.
+!dataset_type = gene expression array-based
+!dataset_pubmed_id = 11333217
+!dataset_platform = GPL18
+!dataset_platform_organism = Escherichia coli
+!dataset_platform_technology_type = spotted DNA/cDNA
+!dataset_feature_count = 5764
+!dataset_sample_organism = Escherichia coli
+!dataset_sample_type = RNA
+!dataset_channel_count = 2
+!dataset_sample_count = 8
+!dataset_value_type = log ratio
+!dataset_reference_series = GSE9
+!dataset_order = none
+!dataset_update_date = Apr 06 2003
+^SUBSET = GDS100_1
+!subset_dataset_id = GDS100
+!subset_description = irradiated
+!subset_sample_id = GSM544,GSM545,GSM546,GSM547,GSM548
+!subset_type = protocol
+^SUBSET = GDS100_2
+!subset_dataset_id = GDS100
+!subset_description = not irradiated
+!subset_sample_id = GSM542,GSM543,GSM549
+!subset_type = protocol
+^SUBSET = GDS100_3
+!subset_dataset_id = GDS100
+!subset_description = 5 minute
+!subset_sample_id = GSM547
+!subset_type = time
+^SUBSET = GDS100_4
+!subset_dataset_id = GDS100
+!subset_description = 10 minute
+!subset_sample_id = GSM544
+!subset_type = time
+^SUBSET = GDS100_5
+!subset_dataset_id = GDS100
+!subset_description = 20 minute
+!subset_sample_id = GSM545,GSM542
+!subset_type = time
+^SUBSET = GDS100_6
+!subset_dataset_id = GDS100
+!subset_description = 40 minute
+!subset_sample_id = GSM546
+!subset_type = time
+^SUBSET = GDS100_7
+!subset_dataset_id = GDS100
+!subset_description = 60 minute
+!subset_sample_id = GSM548,GSM543
+!subset_type = time
+^SUBSET = GDS100_8
+!subset_dataset_id = GDS100
+!subset_description = 0 minute
+!subset_sample_id = GSM549
+!subset_type = time
+^DATASET = GDS100
+#ID_REF = Platform reference identifier
+#IDENTIFIER = identifier
+#GSM549 = Value for GSM549: lexA vs. wt, before UV treatment, MG1655; src: 0' wt, before UV treatment, 25 ug total RNA, 2 ug pdN6; src: 0' lexA, before UV 25 ug total RNA, 2 ug pdN6
+#GSM542 = Value for GSM542: lexA 20' after NOuv vs. 0', MG1655; src: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6; src: lexA 20 min after NOuv, 25 ug total RNA, 2 ug pdN6
+#GSM543 = Value for GSM543: lexA 60' after NOuv vs. 0', MG1655; src: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6; src: lexA 60 min after NOuv, 25 ug total RNA, 2 ug pdN6
+#GSM547 = Value for GSM547: lexA 5' after UV vs. 0', MG1655; src: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6; src: lexA 5 min after UV treatment, 25 ug total RNA, 2 ug pdN6
+#GSM544 = Value for GSM544: lexA 10' after UV vs. 0', MG1655; src: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6; src: lexA 10 min after UV treatment, 25 ug total RNA, 2 ug pdN6
+#GSM545 = Value for GSM545: lexA 20' after UV vs. 0', MG1655; src: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6; src: lexA 20 min after UV treatment, 25 ug total RNA, 2 ug pdN6
+#GSM546 = Value for GSM546: lexA 40' after UV vs. 0', MG1655; src: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6; src: lexA 40 min after UV treatment, 25 ug total RNA, 2 ug pdN6
+#GSM548 = Value for GSM548: lexA 60' after UV vs. 0', MG1655; src: 0', before UV treatment, 25 ug total RNA, 2 ug pdN6; src: lexA 60 min after UV treatment, 25 ug total RNA, 2 ug pdN6
+!dataset_table_begin
+ID_REF	IDENTIFIER	GSM549	GSM542	GSM543	GSM547	GSM544	GSM545	GSM546	GSM548
+1	EMPTY	0.211	0.240	0.306	0.098	0.101	0.208	0.167	0.190
+2	EMPTY	0.045	0.097	0.142	0.107	0.074	0.202	0.019	0.266
+3	EMPTY	0.191	0.243	0.312	0.023	0.158	0.261	0.255	0.128
+4	EMPTY	-0.013	-0.041	0.112	-0.028	0.175	0.111	0.139	0.137
+5	EMPTY	0.046	0.101	0.183	0.052	0.115	0.225	0.092	0.051
+6	EMPTY	0.097	0.217	0.242	0.067	0.104	0.162	0.104	0.154
+7	EMPTY	0.699	1.789	null	null	null	null	null	null
+8	EMPTY	1.026	1.509	-0.585	0.813	0.105	-0.280	1.242	0.336
+9	EMPTY	0.816	null	-1.322	null	1.327	null	1.242	null
+10	EMPTY	-0.756	null	2.585	-0.234	2.564	-3.087	0.444	null
+11	EMPTY	0.157	-1.036	2.000	1.877	-0.813	3.115	null	0.599
+12	EMPTY	-1.084	2.608	null	1.614	-1.033	1.138	1.564	1.599
+13	EMPTY	null	null	0.166	null	null	1.322	-0.758	null
+14	EMPTY	-0.406	null	0.628	null	-3.802	null	0.757	1.216
+15	EMPTY	null	-1.714	1.794	null	null	1.858	2.049	0.932
+!dataset_table_end

data/test/data/soft/GSE3457_family_partial.soft

@@ -0,0 +1,874 @@
+^DATABASE = GeoMiame
+!Database_name = Gene Expression Omnibus (GEO)
+!Database_institute = NCBI NLM NIH
+!Database_web_link = http://www.ncbi.nlm.nih.gov/projects/geo
+!Database_email = geo@ncbi.nlm.nih.gov
+!Database_ref = Nucleic Acids Res. 2005 Jan 1;33 Database Issue:D562-6
+^SERIES = GSE3457
+!Series_title = Poplar flowering and maturation GeneXp arrays
+!Series_geo_accession = GSE3457
+!Series_status = Public on Oct 11 2006
+!Series_submission_date = Oct 14 2005
+!Series_last_update_date = Oct 17 2005
+!Series_summary = To identify candidate genes involved in maturation and flowering, we conducted microarray expression studies using two poplar genotypes (Populus trichocarpa x P. deltoides hybrids) represented in continuous age gradients of one to six years. We designed 70-mers for 228 poplar genes and microarray studies were carried out using the microplate-based 96-well BioGridArray platform (GeneXP Biosciences).   Floral buds, vegetative buds and shoot tips were collected at different seasonal time points from juvenile and adult trees and from both basal and upper branches of mature trees.  
+!Series_overall_design = The experiment was carried out using the microplate-based 96-well BioGridArray platform (GeneXP Biosciences).  Each of 228 oligonucletides were duplicated in each well. Two human genes, beta-actin and gapdh , were also printed on all arrays as negative controls.  plus ten arabidopsis oligonucleotides selected by GeneXP and used to measure quality of hybridization. For each of 16 samples, two seperate RNA isolations were performed and were considered as biological replicates. Each biological replicate was labeled with Cy5, and hybridized to duplicated wells. 
+!Series_type = Maturation and Flowering
+!Series_contributor = Jingyi,,Li
+!Series_contributor = Olga,,Shevchenko
+!Series_contributor = Ove,,Nilsson
+!Series_contributor = Steve,H,Strauss
+!Series_contributor = Amy,M,Brunner
+!Series_sample_id = GSM77557
+!Series_sample_id = GSM77558
+!Series_sample_id = GSM77559
+!Series_sample_id = GSM77560
+!Series_sample_id = GSM77561
+!Series_sample_id = GSM77562
+!Series_sample_id = GSM77563
+!Series_sample_id = GSM77564
+!Series_sample_id = GSM77565
+!Series_sample_id = GSM77566
+!Series_sample_id = GSM77567
+!Series_sample_id = GSM77568
+!Series_sample_id = GSM77569
+!Series_sample_id = GSM77570
+!Series_sample_id = GSM77571
+!Series_sample_id = GSM77572
+!Series_sample_id = GSM77573
+!Series_sample_id = GSM77574
+!Series_sample_id = GSM77575
+!Series_sample_id = GSM77576
+!Series_sample_id = GSM77577
+!Series_sample_id = GSM77578
+!Series_sample_id = GSM77579
+!Series_sample_id = GSM77580
+!Series_sample_id = GSM77581
+!Series_sample_id = GSM77582
+!Series_sample_id = GSM77583
+!Series_sample_id = GSM77584
+!Series_sample_id = GSM77585
+!Series_sample_id = GSM77586
+!Series_sample_id = GSM77587
+!Series_sample_id = GSM77588
+!Series_sample_id = GSM77589
+!Series_sample_id = GSM77590
+!Series_sample_id = GSM77591
+!Series_sample_id = GSM77592
+!Series_sample_id = GSM77593
+!Series_sample_id = GSM77594
+!Series_sample_id = GSM77595
+!Series_sample_id = GSM77596
+!Series_sample_id = GSM77597
+!Series_sample_id = GSM77598
+!Series_sample_id = GSM77599
+!Series_sample_id = GSM77600
+!Series_sample_id = GSM77601
+!Series_sample_id = GSM77602
+!Series_sample_id = GSM77603
+!Series_sample_id = GSM77604
+!Series_sample_id = GSM77605
+!Series_sample_id = GSM77606
+!Series_sample_id = GSM77607
+!Series_sample_id = GSM77608
+!Series_sample_id = GSM77609
+!Series_sample_id = GSM77610
+!Series_sample_id = GSM77611
+!Series_sample_id = GSM77612
+!Series_sample_id = GSM77613
+!Series_sample_id = GSM77614
+!Series_sample_id = GSM77615
+!Series_sample_id = GSM77616
+!Series_sample_id = GSM77617
+!Series_sample_id = GSM77618
+!Series_sample_id = GSM77619
+!Series_sample_id = GSM77620
+!Series_sample_id = GSM77621
+!Series_sample_id = GSM77622
+!Series_sample_id = GSM77623
+!Series_sample_id = GSM77624
+!Series_sample_id = GSM77625
+!Series_sample_id = GSM77626
+!Series_sample_id = GSM77627
+!Series_sample_id = GSM77628
+!Series_sample_id = GSM77629
+!Series_sample_id = GSM77630
+!Series_contact_name = Jingyi,,Li
+!Series_contact_email = JINGYI.LI@OREGONSTATE.EDU
+!Series_contact_phone = 541-737-8496
+!Series_contact_institute = Oregon State University
+!Series_contact_address =  
+!Series_contact_city = Corvallis
+!Series_contact_zip/postal_code = 97331
+!Series_contact_country = USA
+!Series_platform_id = GPL2092
+^PLATFORM = GPL2092
+!Platform_title = GeneXp BioGrid_poplar maturation
+!Platform_geo_accession = GPL2092
+!Platform_status = Public on Dec 31 2005
+!Platform_submission_date = May 17 2005
+!Platform_last_update_date = Jun 16 2005
+!Platform_technology = spotted oligonucleotide
+!Platform_distribution = non-commercial
+!Platform_organism = Populus
+!Platform_description = Single channel oligonucletide array for comparing gene expression among 16 tissue types to explore maturation and flowering in poplar
+!Platform_description = Keywords = poplar maturation
+!Platform_contributor = Jingyi,,Li
+!Platform_contributor = Olga,,Shevchenko
+!Platform_contributor = Steve,H,Strauss
+!Platform_contributor = Amy,M,Brunner
+!Platform_contact_name = Jingyi,,Li
+!Platform_contact_email = JINGYI.LI@OREGONSTATE.EDU
+!Platform_contact_phone = 541-737-8496
+!Platform_contact_institute = Oregon State University
+!Platform_contact_address =  
+!Platform_contact_city = Corvallis
+!Platform_contact_zip/postal_code = 97331
+!Platform_contact_country = USA
+!Platform_data_row_count = 240
+#ID =  
+#GB_ACC = Gene bank accession number
+#SPOT_ID =  
+#Function/Family = gene functions and family
+#ORGANISM = sequence sources
+#SEQUENCE = oligo sequence used
+!platform_table_begin
+ID	GB_ACC	SPOT_ID	Function/Family	ORGANISM	SEQUENCE
+A001P54Um	AI161490		TF, MADS-box	P. tremula x P. tremuloides	CATGGGTTATGTTTAGATTGTAAGCAATGATTGGTTACATAATCATGTGTGTTGCATAAGTAACAAACTT
+A003P34U	AI161604		TF, Homeodomain(Knox class)	P. tremula x P. tremuloides	CATTAATCAAAGGAAGCGACATTGGAAACCATCTGAAGATATGCAATTCATGGTGATGGATGGCCTTCAT
+A009P50U	AI161918		TF,  NAC(no apical meristem)	P. tremula x P. tremuloides	AGAGCCCCAATGGGCAGAAAACTGACTGGATCATGCATGAATACCGGCTTGAATCCGATGAGATGGTCCT
+A010P29U	AI161962		TF, MADS-box	P. tremula x P. tremuloides	ACCAAGACGCCACAAATATTACAAGACCGGCAAATTATCGAGGTGGAGACAGAATTGTTCATAGGTCCAC
+A031P05U	AI163047		Transcriptional regulation, SNF2 subfamily	P. tremula x P. tremuloides	GTCATATATGATCCTGATCCGAATCCTAAGAATGAGGAACAGGCAGTTGCTAGAGCCCACCGGATTGGCA
+A039P68U	AI163321		TF, flowering protein CONSTANS	P. tremula x P. tremuloides	AGAAAATTCGATATACTGTCCGTAAAGAGGTAGCACTTAGAATGCAACGGAATAAAGGGCAGTTCACCTC
+A047P36U	AI163743		Polycomb transcriptional repressor	P. tremula x P. tremuloides	TTATTTATGATCAAACTGTGGAATCACGGACTACTTGATGCACGGACGATGAACATGTGTAATATGATTC
+A069P31U	AI164824		TF, MADS-box	P. tremula x P. tremuloides	AGGAGTTGAACAATACCATTGTGTGATGAGTTAAAATATCTGTTGGAAGATTACTGTACCATATTGTAAT
+AF240445	AF240445		Ubiquitin	P. tremula x P. tremuloides	AGGCTTAGGGGAGGAACTATGATCAAGGTGAAGACTCTCACTGGAAAAGAAATTGAAATTGACATTGAAC
+B014P39U(UB21CPA06)	BU821251		curlyleaf-like 1 homeotic protein; polycomb; set domain	P. tremula	TGCTGGACGCGAATGTGACCCAGATGTTTGTAGGAATTGCTGGGTTAGTTGCGGAGATGGCTCATTAGGA
+B016P21Um		TF, MADS-box	TF, MADS-box	P. tremula	CCAGTAGAATCTTGCGAGGAACAGATCTGCTATCGCTGGAAGATCGACTTATCCCTTGAGATACTGGTAT
+B020P33U		Post-transc. regulation/ RNA-binding, C3H zincfinger	Post-transc. regulation/ RNA-binding, C3H zincfinger	P. tremula	TATCAAACTATTGACTCCAGATTGTCTATGCTGGGAGTGGGACCGACCTTCTACCCTCAACGACCTGGAC
+C025P36U	BI068662		Putative signal transduction, DENN domain, WD-40 repeat	P. tremula x P. tremuloides	CAGATCACAAGCTTTAGGGACACAAATGGATTCGGCAATAGAATGGTGGAGACCACTGATCTGGAGTGAT
+C025P42U	BI068668		Transcriptional regulation, putative helicase	P. tremula x P. tremuloides	AAACCAGCTATTCCTGACCTGCCACCCACTGTATCAGCAATAGCTCAATCAGTTCGTGTGCTATATGGAG
+C036P25U	BI069375		TF, salt-tolerance protein, CO	P. tremula x P. tremuloides	AAGACAGAGCCCTCTTTTGCCAGGATTGTGATGAACCAATCCATTCAGCTGGTAACCTTTCTGCGAATCA
+C054P45U	BI071264		transcriptional. regulation, peroxiredoxin	P. tremula x P. tremuloides	AATCAGCTTCATTACATTGTGAGCGCGAGGAACAGATAGGAAGATGGGGTCCACAGACTGTCGGACCTAC
+C061P33U	BI071641		Post-translational regulation, F-box protein	P. tremula x P. tremuloides	TATTGATGTTTGGGGGTTTGCTAAGAGAGGCCCCTTCGTTCCGCTCCAGCGATGTGTTACCATGGATCTA
+C067P63U	BI072011		TF, GIA/RGA-like gibberellin response modulator	P. tremula x P. tremuloides	TCAGTGGAGAACTCGGTCGATTCGCTGGTTTGACCGGTTCATCTAGGGCGAATGCCTTAAACAAGCTACA
+C092P78U	BI073104		reduced vernalization response 1	P. tremula x P. tremuloides	ATGGGAAACAGTGGCCTGTTCGATGCCTTTACAGGGGAGGCAGAGCTAAATTTAGTCAGGGATGGTATGA
+F003P03Y	BI119647		TF, MYB	P. trichocarpa	ATGAAGAGGACCTCATTATCAAGCTACATGCCCTCCTTGGAAATAGGTGGTCATTGATAGCAGGAAGATT
+F011P01Y	BI120134		Transcriptional regulation, Bromodomain, WD-40 repeats	P. trichocarpa	AAGAAGCAGGCCCTTGGAAAATAATGAAGGGAAACATTAGGGCGGTCGAGTTCTGTAAGGTTGAAGCCCT
+F012P39Y	BI120241		Transc. Reg.--Nucleosome/ chromatin assembly factor group B, CAF1 sbunit p150	P. trichocarpa	TGATGGAACGCTTTCTAAAAAGAAGCAAAAGTAGTTCCCCATGTCAGAATGACCAGAGTTTAACTAAAGC
+F027P14Y	BI121043		TF, Homeodomain-Leucine Zipper (HD-ZIP)	P. trichocarpa	ACCACCACCAACCCATCCACCACACACACACACACACATAGCACCACCAACTCTAAACCATTGTCACTAC
+F028P06Y	BI121069		Transcriptional regulator, SET-domain	P. trichocarpa	TACCATACCTGTCACGTCTATCGTTATGCCTCCTGTTCATCTAAAACCTCCCCAATGTACTCACATATAA
+F044P04Y	BI121667		RNA processing/post-transcriptional regulation, DEAD/DEAH box RNA helicase	P. trichocarpa	TGGTTTTGGGCAAACCGGCTCCTCTTGTTAGTACTTTCAGACTGAGCTACTATTCGATATTAAATCTAAT
+F052P94Y	BI135499		Transcriptional regulation, zinc-finger helicase	P. trichocarpa	TCCTGAGGGAATGATGACACGGGCTTTGCATGGAAGCAGACCGTCAAAGTTTCAATCGCATCTGACAGAC
+F066P33Y	BI136301		TF, MADS-box	P. trichocarpa	CGAGCAAGCACAATGGGAGCAGCAAAACCTTGGCCAGAACTCATCCTCTTTTATGCTACCACAAGCACAA
+F068P73Y	BI136466		CYCLIN D	P. trichocarpa	GCTCGTCAAGAAGCTGTGGAGTGGATGCTTAAGGTCATTGCTCATCATGGATTTTCAGCTCTCACATCAA
+F070P70Y	BI136615		TF, MYB	P. trichocarpa	GGTTCTCTCCCTCGGGTCTGTTTGGATGAACCCCGGTTCAAACTTTGTCATCTTCAACTAGCACCACAGT
+F093P10Y	BI137760		transcriptional corepressor,  regulates AGAMOUS	P. trichocarpa	AGCAGCAACAGCTTCAGCAGCACGTGCTTTCAAATCAGCAATCACAGAGTTCAAGTCACAATCTTCACCC
+F098P59Y	BI138094		TF, homeodomain	P. trichocarpa	AGGAGATCCAAAGGCTGTCAGACCGTATTGATGGGGTTCCACTAATAGTCCTAGTTCATCCTTGTCGATG
+F099P36Y	BI138136		Transcriptional regulation, p300/CBP acetyltransferase-related	P. trichocarpa	CATTCTAGGAATGCGCAGAATCCCCCTCATCCAGACCGACAGCATGACATGAGCTCATCATTGACCACAA
+F099P51Y	BI138143		Signal transduction, ovule/fiber cell elongation	P. trichocarpa	GATTCATTGGGACACTCGCCCTGCTAATCTGTCCCATATTTACAAGTGGCTCAACTCTTGCAACCATTCT
+F100P70Y	BI138195		RNA processing, post-transcriptional regulation, DEAD/DEAH box helicase carpel factory (CAF	P. trichocarpa	GAGATGCCTTCGTTATCATGGTTCGAGCGATAAATAGATCCATCGACATCGATAAGACCTCTGCATCCAG
+F101P21Y	BI138212		SWI/SNF-related matrix-associated actin-dependent regulator	P. trichocarpa	AAATTGCAGAACATGTTGGAACCAAGTCAAAAGCACAATGCATCCTTCACTTTCTGCGTCTGCCTGTAGA
+F101P86Y	BI138245		TF, C2H2 zinc-finger	P. trichocarpa	CTCTAAGCGTCCACGTCTCGACCACCAGCCTACTGAAGAAGAATATCTCGCTCTCTGTCTTGTCATGCTA
+F103P52Y	BI138326		TF, MYB	P. trichocarpa	CACATGGTACAATGGGAGAGTGCTAGAGTTGAGGCTGAGGCCCGTTTGTCAAAGCAGTCATTGCTTATTA
+F103P87Y	BI138344		Transcriptional regulation, histone deacetylase, plant specific HD2 type	P. trichocarpa	GGTTTTTCAGGCTTGGCAGCTTTATCCTTAGCGGTAGCAGCTTTCATAATATCAGCTTTCGCAAATTCAA
+F106P90Y	BI138460		TF, auxin response factor	P. trichocarpa	TGTTGCGGGTGATGCGTTTATATTTCTAAGAGGTGAGAATGGAGAACTTCGAGTTGGTGTTAGACGTGCA
+F110P74Y	BI138617		AMP-binding protein	P. trichocarpa	AGAACTTGAGTAGTGTAGAGGTTGAGTCAGTGCTATACACGTTTCCAGATATTAACGAGGCGGCGGTTGT
+F115P67Y	BI138781		TF, homeodomain	P. trichocarpa	TCCACTTGTTCCTACTCGTGAAAGTTACTATGTCAGGTACTGTAAACAACATGCTGATGGGACTTGGGCT
+F117P40Y	BI138846		Signal transduction, HPt phosphotransmitter	P. trichocarpa	GTGTGGATCGGTTACGAGCCGATATGAGCCGTTTGCTGGCAATACTATTCCACCAGGTTTGCTGTGTTAG
+F117P48Y	BI138849		Signal transduction, receptor protein kinase	P. trichocarpa	CAAGCTCCACCTGCCCCACTCCCATCTGCGAAAGTCCCATGCTATATCGATGAGTATGCGAATATCAAGT
+F118P50Y	BI138891		TF, squamosa-promoter binding protein (SPB)	P. trichocarpa	ACAAATGCTAATGTCACATTGTGTGACAACCATGCATGGTGTCAGGATTGCTAGCTGTGGCACTAGGCAT
+F119P13Y	BI138915		Signal transduction, cryptochrome	P. trichocarpa	TTTTCCGTGGAATGACAATCAGGTCCATTTTAAGGCTTGGAGACAGGGGCGGACTGGTTACCCATTAGTT
+F119P74Y	BI138950		nucleosome/ chromatin assembly, histone	P. trichocarpa	TTGCTAATGGCAAGCTTGTTAAGGTGAAGAACTCCTTCAAGCTCCCTCCTAAATCTCCCGCTGCTGGTGC
+F121P83Y	BI139042		Transcriptional regualtion, chromomethylase	P. trichocarpa	TGTCGGGAAGCTATAAAGAACTTTGTCATGCATGGCTACCTGTCAAATATTCTACCATTACCCGGTGATG
+F128P16Y	BI139280		SET domain	P. trichocarpa	TTTCGTGCAGCATACCTGTATCCACTTCTCAGCAACAAGTGGTAGGTACACTGTCTTGGCTAATCCCTCT
+F129P24Y	BI139316		Transcriptional regualtion, chromomethylase	P. trichocarpa	GGCAAAAGCTATGCAAACGGTATGCGGTCAATGATGTAGGAAGGACACATAAGTCACGGTCAATGGCATC
+F131P79Y	BI139444		TF, C2H2 zinc-finger	P. trichocarpa	ACAATGTTTGATACTTTCGGAGGACAAGGCATCCGTGTACCTCCTCCTTTCCCCTCAGATATAGCTCCTC
+G070P72Y	BI128093		squamosa-promoter binding(SPB)	P. tremula x P. tremuloides	ATGGTTGCAACTCTGACCTCAGTACTTGCAGGGACTACCATAGGCGCCATAAGGTCTGTGAGCTTCATTC
+G074P09Y	BI128315		Signal transduction, gigantea	P. tremula x P. tremuloides	GGAGACAGGTTGTTGACGCACTATGCAATGTTGTATCAGCATCACCAACAATAGCAGCCACAGCAGTTGT
+G095P48Y	BI129777		TF, homeodomain	P. tremula x P. tremuloides	AGCATGCATGGAGGCCACAAAGGGGTCTGCCTGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTGTTTGA
+G105P48Y	BI130427		TF, B3 DNA binding, PEST domains	P. tremula x P. tremuloides	AAGATACTATGCGGTTGACAAAGGGTTCTAACATTTCACAAGTTGCTAATGAATCAGCACGGAATGTAGG
+G126P33Y	BI131829		TF, homeodomain	P. tremula x P. tremuloides	GTGCTGGGACCTCAGGGATAACAAAAGGTGAGACACCGAGGCTTAAGTTATTAGAGCAAAGTCTAAGACA
+G134P12Y	BI132257		TF, MADS-box	P. tremula x P. tremuloides	AAAACTGAGCGAGCTTATCACTTTAACGGGGACGGAAGCTGCGTATCTCGTCTTTTCACCTGGGGGTAAG
+GA20-OX	CAC00709		GA biosynthesis, gibberellin 20-oxidase	P. tremula x P. tremuloides	CGAGGAATACTTTCACAACAGAATGGGGGAAGATTTCGCTGAGTTCGGGACGGTGTATCAGGACTACTGT
+HB1	CAA09366		TF, Homeodomain	P. tremula x P. tremuloides	GAACTTACATTCACAAGGCTCATTAGGGCTTAGGACTATCGTTGTGGCATGCATTTTACTGATTGCCTAA
+HB2	CAA09367		TF, homeodomain	P. tremula x P. tremuloides	GGATCTTTTGTATGTGTTCATAGAGTATACAAATTTGCGGAGAAAAACCGATGGTATGTTAAGGGTGTGG
+I012P09P	BI122720		TF, homeodomain	P. tremula x P. tremuloides	TGAGCTGTCCTATTTAGTGAGTATTGTGTTAGTTTATAAATTTTATCATGGCTGTGTCGGGTCTGTGAAT
+I017P76P	BI123112		TF, MADS-box	P. tremula x P. tremuloides	CAACTGGAGCGACAGTTAAAGACAGGGGTTGAACGTATCCGCTGTAAGAAGAAACGAGCCATCTCAGAGC
+M101C08	BU867525		post-transcriptional regulation, E3 ubiquitin ligase, Skp1	P. trichocarpa	AAGGAAAGGGGTTTAATCTATTTCTATAATTGCCTTTTTCTGTTGGACGTGGATTGATGTTAAGGTTTTA
+M101C11	BU867528		histone H1C	P. trichocarpa	CTACTGCTTAGATGTATAAATTTTGTACTAGCAGAACGGCAGTAGTTAGTTTCTGATGCTCTACGTTGGG
+M102E03	BU867630		putative LRP(lateral root primordia) 1	P. trichocarpa	TTGGCTTAAATGCAGAAGGCGTGAACCCCACTTTTGTCCTAAATTCTACTACCATAAATGGCATGCCATT
+M102E09	BU867635		AP2 domain	P. trichocarpa	AGCTGCAAGGGCGTATGATGCTGAGGCGCGTAGAATTCGTGGCAAGAAAGCTAAGGTGAACTTTCCTGAT
+M103H01	BU867748		nucleosome/ chromatin assembly, histone H1	P. trichocarpa	TTTAGGGCGTGTAGATGGGGGGTAGTGATTGTAAATTTGAAAGAAAAGGGAGGGTGCTAATGGTAGTTAG
+M104E08	BU867803		TF, MADS-box, YABBY	P. trichocarpa	GAATGACTTTAGCGTTACAGTTCGAGGAATGGCTGATCATGAACTTCCTAGGCCACCCGTTATCCACAGA
+M105A07	BU867841		Post-trasnlational regulation, HSP90; heat shock superfamily	P. trichocarpa	AACCACCAAGTCGGATGGTAAGTTGACATCACTTGATCAGTACATATCAAGAATGAAATCTGGGCAAAAG
+M111B12	BU868098		Post-translational regulation, E3 ubiquitin ligase subunit, SKP1	P. trichocarpa	GCAAGAAACACGTTGAGACTCCAAAACCCGAGGATCGAGGAACTAACAGCGGCGATGATGAGCTTAAGAA
+M112C09	BU868189		TF, MADS-box	P. trichocarpa	AATGATGATCCCGAAAACCATGGTAGCTGGACTTTGGAATATGCGAAGCTCAAAGCTCGGGTAGATGTTC
+M116D03	BU868480		TF, MYB	P. trichocarpa	ATCATCGTCTGCTCCCCTTGAACCTGGATATGTCTTGAGGCCTGATTCGTCTTCAATACCTATGAACCCC
+M116E04	BU868491		TF, NAC	P. trichocarpa	AAACTTTAATGGGTTATTACAACTATAAGAAGTGTGCATGAGTTTTTAGACTTTGAGCTAGAATTGCGCA
+M118F07	BU868664		TF, MYB	P. trichocarpa	AGAATTCTGTACCAACACTAGATATTCTCAAAAAGGCTAGCCCTTTCAGGGAGTTCGTATCTTCACCGAA
+M120B06	BU868703		Ubiquitin	P. trichocarpa	AGAGCTAATCTACTAGGGCATGCGGTGGTAGTAGGGTCATAGGATTGTTGGCAGTGAACATATCTATTCG
+M122B12	BU868794		translation initiation, eIF-5A	P. trichocarpa	CTGGGTTTTTTTTATTGTTAGTGTTTTCTAGTTCTCTTGATCCATCGCCGCCATGTCTGATGAGGAGCAT
+M124B09	BU868951		TF, 1B3 DNA binding, PEST domains	P. trichocarpa	GCTAATGTTTCACAAGTGGCCAATGAATCGGCACGAAATGTATTTGCTCAATACAACGAGCATAAGAATT
+M125D02	BU869042		TF, homeodomain	P. trichocarpa	AAGTCTAAGCAACTCGAAAGAGACTACAGCATGCTACGAGCTAATTACAACAGCTTGGCTTCCCGGTTTG
+M127F08	BU869233		translation elongation factor eEF1Balpha	P. trichocarpa	ATGGGATGATGAGACAGACATGGTGGCGTTGGAGAAGGCAGTTAGGAGTATTGAGATGCCCGGTCTCTTT
+M129E09	BU869391		TF, MADS box	P. trichocarpa	TCCAGGATGGATGCTTTGAGTTTCGTGCTCTTCATTGCTCATAAAGGAACACCTACTATGTAACTTTCTC
+PCEN-L		Signal transduction, PBP	Signal transduction, PBP	P. trichocarpa	GTCATGACAGACCCTGATGTTCCTGGTCCTAGTGATCCATACCTCAGGGAGCACCTACACTGGATAGTAA
+PHYA	AF024544		Signal transduction (red light receptor), Phytochrome	P. trichocarpa	AGAACTTGAAGCAGTGACTAGTGAGATGGTCCGTTTAATTGAAACAGCTACAGTGCCAATTTTGGCAGTT
+PHYB1	AF024545		Signal transduction, Phytochrome	P. trichocarpa	GCATATGGAGTTCAAGTATGCTCTCCTCAACTCTTTTGCATGTCTTCCTCCTGAATTAGTTCAAGACATG
+PHYB2	AF024546		Signal transduction, Phytochrome	P. trichocarpa	ACAGATATTGAAGATCATACGAGACATTGATCTTGAGAGCATTGAAAATGGTTCACTGGAGCTTGAGAAG
+PMFT		Signal transduction, PBP, Phosphatidylethanolamine-binding	Signal transduction, PBP, Phosphatidylethanolamine-binding	P. trichocarpa	TCATTTCAACACTCGACTCTATGCTGCTCATTTGGACCTGGGCCTGCCTGTTGCCACCGTCTACTTCAAT
+PTAG1	AAC06237		TF, MADS-box, AGAMOUS homolog	P. trichocarpa	GCTACATGTATGCTAAAAAACCTGAAGTAGCGTAAATCATATTTGTCTGGGTGGGAGGGCCTAGTACTCT
+PTAG2	AAC06238		TF, MADS-box, AGAMOUS homolog	P. trichocarpa	CAACCATTTGACTCTCGGAACTATTCTCAAGTTAATGGATTGCCGCCTGCCAATCATTACCCTCATGAAG
+PTAP1-1B	AY615964		TF, MADS-box	P. trichocarpa	TGCTAAAAATGTAGTTTTTGGTTCGTTATGAAATTAGATTATATATATATACGCACCTTGTTATAACTAA
+PTAP1-2A	AY615966		TF, MADS-box	P. trichocarpa	TGTTGTTGTTAAAAGTTGTATCTGAATCAATTAAGAAGACTCCTACAGCTATATAATTTTCATAATATAT
+PTB2	AAG45501		TF, teosinte-branched-like	P. trichocarpa	AATTTCATGACCACCCCGCATGCCCTAGAACCAAACTTAAGTACAATGATCATGACAACATTAAACGCCC
+PTBF1	AF288616		TF, leucine zipper	P. trichocarpa x P. deltoides	TCTTCCCACTAAAGACGCTGGGATGTTGGGACAGATAAATGCGAGTGAAATAGCATTTTCTAGTCTTTTT
+PTCO11		TF, CO(C2C2 zinc-finger, B-box)	TF, CO(C2C2 zinc-finger, B-box)	P. trichocarpa	AAGGTTCGCTAAACGTACAGATACTGAAGTCGAGGTTGATCGAAGCAGTCTTTATGGATTCGGTGTCGTT
+PTCO12		TF, CO	TF, CO	P. trichocarpa	AATGTTGTTGTATATAATTAAGGTGGAAGCCTTGAATTTGTACACGTTTTTATGCAGTAATGAGTTTTGT
+PTCRY1D		Signal transduction (blue light receptor), cryptochrome	Signal transduction (blue light receptor), cryptochrome	P. trichocarpa	GAGGGTTACAAATTTGACCTAAATGGAGAATATGTACGCCGGTGGCTTCCTGAACTTGCTAGGCTACCAA
+PTD	AAC13695		TF, MADS-box	P. trichocarpa	GAGGTCGACCTTCCAGCTCTTCAGACATCTTATCTAAATGCGTGTGCTAACTAGAGATGCTATCTAATAT
+PTID1L1A		TF, C2H2 zinc-finger	TF, C2H2 zinc-finger	P. trichocarpa	TATGTTTGTCCAGAACCTTCATGTGTCCATCACAATCCGGCTCGAGCATTAGGCGATCTTACAGGGATTA
+PTID1L3		TF, C2H2 zinc-finger	TF, C2H2 zinc-finger	P. trichocarpa	ATCTATGCCGTTCAATCAGATTGGAAGGCTCACTCTAAAACCTGTGGAACAAGAGAGTATAGATGTGACT
+PTID1L4		TF, C2H2 zinc-finger	TF, C2H2 zinc-finger	P. trichocarpa	GTTCAATCAGACTGGAAAGCTCACTCTAAAATTTGTGGCACAAGAGAGTATAGATGTGATTGCGGTACTC
+PTIR1	AF139835		Post-translational regulation, F-box	P. tremula x P. tremuloides	CCTTGAAAACGTCTTAGAAAACGTTCTCTGGTTCCTAACCTCACGTAAGGACCGAAACGCTGCGTCATTG
+PTLF	O04064		TF, unique	P. trichocarpa	AGGCAATTGCTCTCTGGTGATAATAATACAAATACTCTTGATGCTCTCTCCCAAGAAGGTTTCTCTGAGG
+PTPGM		Starch metabolism, phospho-glucomutase	Starch metabolism, phospho-glucomutase	P. tremula x P. tremuloides	TTTTCTTTTTGTCGCCTTACCAAAAAAGGCAGGAGTACGATTTACTAAAACACGCCGATCCAAAGTTTTG
+PttGA2-OX		P. tremula x P. alba		P. tremula x P. alba	CAGCGAGAGACTAGTAGCTTGGGGGGGGGGGGTAATGGTAGCACTGTAGTTTAGCCGTTAGTGTAAAATT
+PttIAA1	AF373100		Signal transduction, AUX/IAA gene family	P. tremula x P. tremuloides	TATTGTCTTGCTTAATAATGACCATCATTATTGTTTCTAGCTGGCTAGGTTGTCGAGAGCGTGTTCTGTC
+PttIAA2	CAC84706		Signal transduction, AUX/IAA	P. tremula x P. tremuloides	TTGGGAGTGCAACTGCAATTCTATGCGTCGAGAGTCTGGATCGTTTCCTGTTTCGCACAGGACTTCAGTT
+PttIAA3	CAC84707		Signal transduction,aux/IAA	P. tremula x P. tremuloides	TGTTGAGGATGATAGAACAAAAGTTGGTCTTTTGTTGTAAATTAAGGATTTTCAGAGTTCATCAAAAAAA
+PttIAA4	CAC84708		Signal transduction,AUX/IAA	P. tremula x P. tremuloides	TTGACACATATATAATATGGCGAGTCGAAAATAAATAGGTAGTGGATAGCTAGGTAAACTCTATATCAAG
+PttIAA5	CAC84709		Signal transduction,AUX/IAA	P. tremula x P. tremuloides	AAAGTAATTAACGGTCCTCAGCGGCTTTGTGTTGGATTTTGGTTGCTGTATGGTCTTATTATACTATTTG
+PttIAA6	CAC84710		Signal transduction, AUX/IAA	P. tremula x P. tremuloides	GCCTTGCATCCATGTATGAAGACTAGCAGGCAAGGCACTTGCGCAACATGGATGGATCAGTAGTGGTGTT
+PTTPIN1	AF190881		Signal transduction, polar auxin efflux carrier, PIN1	P. tremula x P. tremuloides	AGAAAAACACCTATGATATTGGAATCCATGGAGACCCTATTTAGGCTACTAGGTAGCGCATGGAAAAGTT
+PTTPIN2	AF515435		Signal tranduction, auxin efflux carrier, PIN1	P. tremula x P. tremuloides	GAGCTCCGACGAGCATGGCATCGCAGGAGCTGATGAGCAACAATTAGTTATTACAGTAGTAGTACCTAAC
+PTTPIN3	AF515434		Signal transduction, auxin efflux carrier, PIN1	P. tremula x P. tremuloides	TGCTGGTCGTGTGTCACATCTGGCAGTAGCATTGATTACTGCGCCAAAATATATGTTCTTATAACAAGAG
+R01B05	CA821929		Transcriptional regluation, DNA (cytosine-5-)-methyltransferase	P. trichocarpa x P. deltoides	TTCAGACCAGATGATATTTCACCTGAAAAGGCATATTGTTCTGATATTCCGTGAGATATATTATAGTGAA
+R02H01	CA822027		ELONGATION FACTOR 1-ALPHA	P. trichocarpa x P. deltoides	GTTTGGAACGGTCCCAATTGGTCATGTGGAACTGGTGCATCAAGCCTGGACCAATTGGAAATTTCAGGCC
+R07C07	CA822366		TF, chitin-inducible gibberellin-responsive protein; GRAS protein/scarecrow-like	P. trichocarpa x P. deltoides	AGAGTCATCAGGCGCTAATATTTATCGTACCCTTAAGTGCAGGGAGCCTGAAGGCAAGGACTTGCTGTCT
+R08A10	CA822419		TF, AP2	P. trichocarpa x P. deltoides	AGAGAAGTGAATTTGAAACGGAAATGGGGAAAGACAATGAGTTCTTGGATAATATTGTAGACGAAGAGTT
+R15C07	CA822886		TF, GRAS/SCARECROW	P. trichocarpa x P. deltoides	CAATGAGTGGAAACTCGATGGCTCAAGCACAACTTATATTGAACATGTTCCCTCCTGCTCATGGCTATAA
+R22G04	CA823228		Argonaute (AGO1)-like protein	P. trichocarpa x P. deltoides	TTTTCAGCAGATGATCTGCAGGAACCTGTGCATTCCCTCTCATATGTATACCAAAGAAGCACGACTGCCA
+R22G10	CA823232		FPF1	P. trichocarpa x P. deltoides	AGAACCGTAATATGTTTGAAGTAAGGGATATGTAGTACGTTGATTACGTACGTCCTCATATATAGTCCTT
+R24E07	CA823338		TF, GRAS/Scarecrow	P. trichocarpa x P. deltoides	TGATCTATGATGCTACCTAGCTCGAGAGGAACCTTATGGAGTTTTAGACTTGCAGTTGGTAACTACCATC
+R26F09	CA823471		TF, AP2	P. trichocarpa x P. deltoides	GGAAAAATCTATACAGAGGTATAAGGGCAACGACCTTGGGGTAAATGGGCAGCTGAGATTCGTGACCCAA
+R29F11	CA823676		FPF1	P. trichocarpa x P. deltoides	AGTGAGGGATATGTAGTGCGTTAAGTACTCATATATAGCCCTTTATTCATGTTTGTCTGCATTTTAGTCC
+R33C03	CA823904		polyubiquitin	P. trichocarpa x P. deltoides	CTCCGTCTTCGTGGAGGCATGCAGATATTTGTCAAGACCTTAACAGGGAGGACCATTACTCTAGAGGTGG
+R34B09	CA823967		TF, homeodomain	P. trichocarpa x P. deltoides	ACAATCTCTACAAAGTTTGACTGGCGTATCTCCTGGGGAAGGCACCGGTGCAACTATGTCTGATGACGAA
+R34G04	CA824001		Actin	P. trichocarpa x P. deltoides	TTATGGCCGGGGACAGCGAATGAAGAAAGAAACACAAAGAACAATTACAGTTATTCTGAACGGTGAGAGG
+R35H10	CA824066		TF, GRAS/Scarecrow	P. trichocarpa x P. deltoides	TGGAGGTAGGATATACTATATAGTTGTATTAATTACATATACTTTTCATAGGTGGGGATGGTGCATTACC
+R43C04	CA824489		Transcriptional regualtion, WD-40 repeat	P. trichocarpa x P. deltoides	GATCATGTGTATGCCTCTTGTTCTGTGGATGGGCATATTGCAATATGGGATGCGCGTCTGGGGAAGTCAC
+R43G01	CA824511		TF, AP2	P. trichocarpa x P. deltoides	AAGGCGATGGGGCGGAAAGTTTACAGGGAGTTTCGAGTGGGGTATGTTATCAAACATCTGGTGTGTGGAC
+R46E01	CA824677		TF, GRAS	P. trichocarpa x P. deltoides	ATTCAATATGCTGATTCGAGATATGATGCGTGATCTAGTGAAGCAGGTGGGCAGTGGACTGTCTTCCAAG
+R48C03	CA824775		Argonaute (AGO1)-like protein	P. trichocarpa x P. deltoides	AAGGCGATACGAGAGGCATGTGGCACCCTGGAAGAAGGATATAAGTGCCTCGGGTTACCTTTGTGGTATT
+R49E04	CA824857		Post-transcriptional regulation/ RNA-binding, CCHC zinc fingern	P. trichocarpa x P. deltoides	TGATCAATTTGTACATAAGGTGGAGCAAGTTGCCGCTACGAAACGTGCGAAGATGTGTGTACGAGAATTG
+R50C10	CA824915		Transcriptional regulation. nucleosome/ chromatin assembly factor group C, WD-40 repeat	P. trichocarpa x P. deltoides	TTTCTCTATGACTTCGTTATCTCTCACCCTCTCGAGTGGCCATCTCTAACCGTCCAATGGGTACCTCTCG
+R51DF126P		TF, Bzip	TF, Bzip	P. trichocarpa x P. deltoides	ATCCTGATGATATTGTCTCCAAGAAACGGAGAAGGCAGTTGAGAAATAAGGACGCGGCAGTGAGATCAAG
+R54A05	CA825137		TF, C2H2 zinc finger	P. trichocarpa x P. deltoides	ACCAAACTACTTCCTGTACAACTACTTCTGCCACGACAACACCCGTGTCTAACGGAAGTGGCAGGGTTCA
+R56B07	CA825263		Translation initiation, eIF3p40	P. trichocarpa x P. deltoides	TTGTTTTCAAACAGTGGAATTGATCGAGGCATTTATGAATTACCAGGAAAATATTAGTACGGTGTGTTTG
+R59E12	CA825474		cyclophilin	P. trichocarpa x P. deltoides	GAATTTCATAAAGAAACATACTGGGCCTGGAATTCTATCTATGGCAAATTCTGGGCCTGGCACTAATGGG
+R59F10	CA825478		TF, CONSTANS	P. trichocarpa x P. deltoides	ACAACCTATATAACTCTCCGAGCTCTGTCCCTTTCATGGCCGATACCCAATACGGTGTCGTTCCCTCGTT
+R63D08	CA825614		Translation initiation, eIF-4b	P. trichocarpa x P. deltoides	TTCTCCGTTATAATTTTGCGAGTTTTGCCAGGACTCTTGCTATAGTAGAACAGTGTTGAGACAATTTTGG
+R65B04	CA825708		TF, NAC-domain	P. trichocarpa x P. deltoides	TACAACATCCGGGTACTGGAAGGCCACAGGCTCTCCTGGTTATGTTTACTCGTCGGACAATCGTGTGATT
+R67C05	CA825769		TF, AP2	P. trichocarpa x P. deltoides	ATTGACGGAGAGTACTGGGTCAGGTGGATCTTCGCCTTTGTCGGATCTGACGTTTCCGGATTTTGAGGAA
+R69F12	CA825916		TF, AP2	P. trichocarpa x P. deltoides	AATAGATACGGGACATGCCATTTTTTGATATGGCAATGAGTACGAGTACGAGTAATCACCCCACAGAGTA
+R70F11	CA825986		Post-transcriptional regulation/ RNA-binding, zinc finger	P. trichocarpa x P. deltoides	TGCATCAAGCTTTGTAGTGTTCTAGGATCAACAAAGCCTAAGACTTTTAAACTTTCTCATCAAAACATGG
+R71A05	CA826000		FPF1	P. trichocarpa x P. deltoides	TAATTTCCCAGTGTGTAGGAATAATAATTGGAACAAGGTTCAGGTCGTTCCTTCGTTGGGTATTTACTAA
+R73H10	CA826180		transcriptional regulation, histone acetyltransferas	P. trichocarpa x P. deltoides	TGTTGGGTGTTTACTGCGGTGTATGCGTTTTTATCATTACCCCGACAGCACACGTATTGCGGCTCAGTCA
+R74C06	CA826202		TF, homeodomain	P. trichocarpa x P. deltoides	AAGAAGAGAGGCATTGTCTCTTTGTACTCTATTTTCTGACTTGGAACCAAAGCTCCTTATCACTCTAGAA
+R74E10	CA826218		TF, AP2	P. trichocarpa x P. deltoides	GATGTGGGATGGGCCGTTTTTGGATATGTTAATGAATACGGGTACGTGTAATCACTCCACGGAATATGGG
+R-AP2		TF, AP2	TF, AP2	P. trichocarpa x P. deltoides	TGTAAATAATAAGGCTACATGTTAGGGAGTTTCATCTCTACCAAGATATTGGTTTACCTCTATTATGAAG
+UA13CPF12	BU817168		Starch metabolism, pyruvate phosphate dikinase, PEP/pyruvate binding domain	P. tremula	AACTTAACAGAAGGCAGTCCTTCACCTATAAAGTTGGTCAGAAAGGAGTTCAGTGGCAGATATGCCATAT
+UA35CPA11	BU818819		TF, GRAS	P. tremula	ATTCTTCAGATAACTTCTATGAGACCTGCCCTTATATGAAATTCGCTCACTTCACGGCCAATCAAGCAAT
+UA35CPG02	BU818875		Polycomb	P. tremula	TGCGCGTCATCAATGCCAGCAATGAAGAGATACACAAGAGTGGTGTAGGGCATGGGGACTCGATAAATGA
+UA52DPC04	BU820187		TF, C2H2 zinc finger	P. tremula	CGTGTCTATGTGTGTCCAGAGTCATCTTGTGTACATCACAACCCAGTTAGAGCTCTCGGGGACCTTACTG
+UA52DPD03	BU820198		TF, C2H2 zinc finger	P. tremula	GAAGGTCTATATATGCCCAGAAAAGACCTGCGTGCACCACGATTCATCTAGAGCTCTCGGAGACTTAACT
+UB10CPB06	BU820432		Signal transduction, LRR protein kinase	P. tremula	GATTCAGACCTTGGGCAGGATTAGGCACCGACACATTGTTAGATTGTTGGGGTTCTGCTCTAACCACGAG
+UB10CPB07	BU820433		Transcriptional co-regulator, LIM-domain binding	P. tremula	ATGGTATGGCTAATGTAAATAACTCACTCAACACTGCATCTGCAACTACCTATGCCAGCGCCCGAGAAAC
+UB10CPF10	BU820482		Transcriptional regualtion, ploycomb group; VEF	P. tremula	TTCATCGTTGTCTCATATCATTCGGTTGAGGGCAGGAAATGTGATTTTCAACTATAGGTATTACAATAAT
+UB11CPH11	BU820600		TF, AP2	P. tremula	GCTGCCCTCAAGTACTGGGGACCTTCAACCCATATAAATTTTCCGTTAGAAAATTACCCGGAAGAACTTG
+UB18CPG04	BU821074		TF, MADS-box	P. tremula	CAAACTCAAGCATGGGGCAAGTGATTGAAAGGCGCAATCTGCATCCAAAGAACATCGACACGCTCGATCA
+UB27CP09(F131P66Y)	BI139437		unknown	P. trichocarpa	AATGAAACACCGTGGGGAAACAAACTTTTACTTGTGTGAAATCAATCGCAATATGGTAATTGATGCTACT
+UB28CPA08	BU821799		Signal transduction, pseudo-response regulator	P. tremula	ATCTTGTTTTAACTGAGGTGGCCATGCCTTGTTTATCAGGCATTGGCCTTTTAAGCAAGATTATGAGCCA
+UB28CPB01	BU821803		TF, auxin response factor(ARF)	P. tremula	AAGTTAGTTGCGGGTGATGCATTCATCTTCCTAAGGGGAGAAAATGGCGAGCTTCGTGTGGGAGTAAGGA
+UB36DPH07	BU822399		Transcriptional reglation, p300/CBP acetyltransferase	P. tremula	CTTCATATCTACCGGTGAATGTAAGGCAAAGGTCACAGCGGCTAGGCTACCCTACTTTGATGGGGATTAT
+UB53CPD11	BU823521		Signal transduction, Ser/Thr protein kinase	P. tremula	TTTGCGTGAGAGAGACCGCTATGAACTGGAAAAGGGACGGCTTATACGTGAATTGAAAAGGATACGAGAT
+UB53CPE02	BU823524		Transcriptional regulation, nucleosome/ chromatin assembly factor group C, WD-40 repeat	P. tremula	TAAGATAGTGGCCACTCATACTGACAGCCCTGATGTTCTTATATGGGATGTCGAAGCACAGCCTAACCGC
+UB60BPD08	BU824105		TF, squamosa-promoter binding (SPB)	P. tremula	AGCAGATAATTGCACCTCTGATCTGACTGATGCCAAGCGATACCATAGACGCCATAAGGTTTGTGAGTTC
+UM37TC05	BU879772		Transcriptional regulation, N-acetyatranferase, silencing group B	P. trichocarpa	GAATCTACCGAATGTCACGGTCATATAACTTCTCTAGCTGTCCTCCGTACTCATCGTAAGCTTGGCCTCG
+UM42TF11	BU880195		TF, AP2	P. trichocarpa	ACGTGCCTACGATACTGCCGCACGTGAGTTCCGTGGCTCTAAGGCAAAGACTAACTTTCCATATCCATCA
+UM43TE12	BU880261		TF, CONSTANS	P. trichocarpa	GCTGCCTTGTTATGCAAAGCAGATGCGGCATCTCTGTGTACTGCCTGTGATGCAGATATTCACTCTGCAA
+UM44TA01	BU880290		TF, homeodomain leucine zipper	P. trichocarpa	GATGGGGTACATTCCTCACTCTTAGAGGCAGGTGATACTTCACATGTCTTCGAGCCCGACCAATCGGATT
+UM53TE12	BU880682		Translation initiation, eIF-6a	P. trichocarpa	AAATGGGCTTCTTGTGCCTCACACCACCACTGATCAAGAGCTCCAGCATTTGAGAAACAGCCTACCTGAT
+UM54TA09	BU880731		Translation inititation, elongation factor 2 (EF-2).	P. trichocarpa	TCATCAAGTCTGACCCTGTTGTGTCGTTCCGTGAGACTGTCATAGATAAGTCCTGCCGTGTGGTGATGAG
+UM54TC12	BU880748		TF, NAC	P. trichocarpa	AAGCACTTGTATTTTACGCCGGCAAAGCTCCCAGAGGAATCAAAACCAATTGGATCATGCACGAATACCG
+UM54TF05	BU880770		ATP synthase beta chain, mitochondrial precursor	P. trichocarpa	GTTCTTAACACTGGATCTCCAATTACTGTGCCCGTGGGCAGGGCCACTCTTGGTCGCATAATCAATGTCA
+UM57TC10	BU880985		Signal transduction, guanine nucleotide-binding protein beta subunit 2.	P. trichocarpa	GATTTGGGCTTTTGGAGGGCACAGGCAGGTAATCTGATTCGAGCAGAAGGATCGAATCACATGTCTCATT
+UM61TC08	BU881322		Transcriptioanl regulation, WD-40 repeat, MSI type nucleosome/chromatin assembly factor C	P. trichocarpa	TGAATAGGGCACGGTATATACCACAAAACCCATTTATGATAGCTACCAAGACTGTTAGTGCTGAGGTATA
+UM62TB07	BU881396		Transcriptional regulation, histone deacetylase	P. trichocarpa	TGCTATTTCTACGATCCAGAAGTCGGCAATTACTATTATGGCCAAGGTCACCCCATGAAGCCCCACCGCA
+UM65TE06	BU881637		TF, AP2	P. trichocarpa	TAAGGGGTCAGTCAGTTTTAGATTCTAAGTACTATTAATTATGCTGTCGATATGTATAGTAAGTCGCTCT
+UM66TB05	BU881681		Transcriptioanl regulation, PHD-type zinc finger	P. trichocarpa	CTTTAACGTTTTAAAGTTGATCAGAGCCAGTTGCCTACTTTAGTCAATGAATTCGAATGACTGCAGATTG
+UM67TB05	BU881759		translation initiation, eIF-1A	P. trichocarpa	CGGCGGGGCCTGATTGATTTTCTTTTTCTATCTATCTATCTATCAGCTTCCTCGCTCCTCTCTCACCTTA
+UM67TE05	BU881786		TF, homeobox-leucine zipper	P. trichocarpa	GCTATTTGGTTTCAAAACAGGAGGGCTAGATGGAAGACTAAGCAGTTAGAGAAAGACTACGAGGTCTTAA
+UM69TD03	BU881923		TF, MYB	P. trichocarpa	AAGTGTCAGGAATTGAATCTTGAGCTGAGGATATGCCCTCCCTATCAGCACCCAACTCAGTCAATGGAGA
+UM69TF07	BU881946		TF, NAC (no apical meristem)	P. trichocarpa	CTCCACGAGGGAGCAAAACGGATTGGGTCATGAATGAGTACAGATTGCCTAGCAACTGCTATTTATCGAA
+UM77TC04	BU882460		Post-transcriptioal regulation/ RNA-binding, C3H zinc finger	P. trichocarpa	TGATGAGCCTGATGTATCTTGGGTTAATACATTGGTTAAAGATGTCCCCCCTGCTGGAAGCACATTTTTT
+UM82TH11	BU882839		TF, MYB	P. trichocarpa	AAGCTGATTCTTTCGGCTCAGGAAGTGGCCATTCTAAGGGTGCTGCCCATATAAGCCACATGGCTCAATG
+UM83TC03	BU882863		TF, AP2	P. trichocarpa	CTCTAGATATCTTCTAAATGTACAGACACTCGGATGGCACAATGCATGGACTGTGGACTTCATGACTCCC
+UM83TF04	BU882889		TF, MADS-box	P. trichocarpa	AATGCTACAGAATTCTAACAGGCACTTAATGGGCGATGCTGTAAGTAATTTATCTGTGAAAGAGCTTAAG
+UM89TG10	BU883381		TF, MADS-box	P. trichocarpa	ATGTATTTTCTAGATATTCTATGTTTATTTCGCTAGCAGAGACGTTTATTATCCTCTTATGTCTAACATT
+UM91TD06	BU883487		TF, AP2	P. trichocarpa	TGGAGAAGTATCCTTCAGTTGAGATTGACTGGTCATCTATCTAAGTTCTAAATTATGATTATGTAATCTT
+UM93TD04	BU883572		TF, MYB	P. trichocarpa	CAATTAAATAGTACTGTACAACAGCTACAGTTTATACGATTTTCTTAGACATGAGGCAGGAATTCAGTTC
+V001E09	BU875027		cyclophilin; peptidyl-prolyl cis-trans isomerase	P. trichocarpa	TGTTGCTGACTGTGGTCAACTCTCTTAGAGTCCCTTGGTTGACATGTCGTTCGGGTGGTGTCTTTGTTTC
+V001G07	BU875049		nucleosome/ chromatin assembly, histone 3	P. trichocarpa	TAGATATTTCTGGGTAGATGGACAACTCTTATCTCTGTTTGTATCTTCTAGGTATCATAAGTCTATTTCC
+V002G11	BU875143		S-adenosylmethionine synthetase	P. trichocarpa	GACAAGAAGAGGAACATCATTTTCTTTCAAGCAGAGCAGCAACTCTACTCTTTCTCCCTAATCTCTCAAG
+V003A12	BU875165		TF, MADS-box	P. trichocarpa	AGTATCCACAGGCAAGTTGGGGATTCAAACTTCGAGGAGCTGACCTTAAGCGACCTAGAACAAACGGAGA
+V006H03	BU875423		Polycomb transcriptional repressor, enhancer of polycomb-like protein	P. trichocarpa	CAGCTGTAACCGTGAAGCAAGAGTTTAGACGGCGGCATACACCACTTGGATGGCTCAATAAAATGGACCC
+V006H09	BU875429		nucleosome/ chromatin assembly, histone 2A	P. trichocarpa	CTCACATTTCGGTTCGACTATTTGTTCGAAAAGGGGCAATCAATGGCTGGCAGAGGCAAAACCCTAGGAT
+V007C11	BU875452		TF, MADS-box	P. trichocarpa	CTTACGGCCGGGGACTCCTTTAAACTTCTAACTTTCTCTTTCTTCAAACTTTTGTTGTTCTCTCTATTAT
+V007E07	BU875471		TF, PHD zinc finger	P. trichocarpa	GCTCCCCACAATATTCGAGGCCGTGTCTGGAAATGTTAAGCAACCTAAGGACCAAACTGCCACTCACAAC
+V008A10	BU875511		Transcriptional regulation, nucleosome assembly factor group A, NAP1	P. trichocarpa	GCTACAGAGTTTGACTGGACAGCACTCTGAATTGCTCGAGAACCTATCTCCGACTGTTAGGAAGCGTGTT
+V008B11	BU875524		Post-translational regulation,ubiquitin activating enzyme, ThiF	P. trichocarpa	ACCAAATACGATCGCCAACTCAGTTGGCGGAAGACTCGATGATAAAGCTCGATAAAATCTGCAGGGAGGC
+V009A10	BU875600		tubulin beta-6 chain	P. trichocarpa	CTATGGACAGTATCAGGACCGGTCCATATGGGCAGATTTTCCGGCCTGATAACTTCGTTTTTGGGCAATC
+V009B10	BU875611		Transcriptional regulation, histone deacetylase HD2	P. trichocarpa	ATGATGAATCTGACGATGACGATTCTGATGACGATTCTGATGAGGATGATTCAGGCGATGGATCCGAGGG
+V009G10	BU875666		TF, MADS-box	P. trichocarpa	GCAACACAAACAAGCAGACAAGCGAACTGAACATGGAGCAACTGAAGGGCGAAGCAGCTAGCATGATAAA
+V012F11	BU875887		TF, MYB	P. trichocarpa	GCTCATGCCAAGTATGGTAATAAATGGGCTACCATAGCAAGACTCCTCGATGGACGTACGGACAACGCAA
+V012H04	BU875916		Transcriptional regulation, arginine methyltransferase	P. trichocarpa	AAACCAGCGCCGATTATTACTTCGATTCTTACTCTCACTTTGGTATTCATGAACAAATGCTGAACGATGT
+V012H06	BU875918		TF, homeodomain	P. trichocarpa	CAAGACAAGTCGCTGTTTGGTTCCAAAACCGCCGTGCCCGGTGGAAAACCAAGCAATTGGAGAGAGATTA
+V015E04	BU876053		Transcriptional regulation, arginine methyltransferase	P. trichocarpa	TGGTGGGCTGACATCGATGCTCAAACTGCTACCTGTTAGCAGGATGTATTTGGAAACCTGCATCTATTTC
+V016C11	BU876112		TF, MYB	P. trichocarpa	GCAAAAGTTGCAGGCTTAGATGGACTAACTACCTCAGACCAGGAATTAAGCGAGGCAACTTCACACCCCA
+V016F11	BU876142		TF, SEP3-related MADS-box	P. trichocarpa	AGAAAGGTTGATGGAAGGTTACGAAGTAAATTCACTCCAGTTGAATCTAAGTGCAGAAGATGTGGGTTTT
+V017G04	BU876211		TF, AP2	P. trichocarpa	CAGTGATACAACCGTTGGATCTTAATCTCGGTCCTGCTGTATCCACCGTGAGATTGCCGTTTCAGCCGAT
+V020F08	BU876433		Transcriptional regulation, histone deacetylase	P. trichocarpa	TGTTGTTGAGAGAATTGACTAGTCTAATGTGCTTGACCTTGTGAAGTCTGGGGCATGACTCGACATGAAT
+V021F11	BU876515		TF, MADS-box ; AGL20	P. trichocarpa	AGCTCTATGAATTTGCAAGCACAAGCATGCAGGAGACCATTGAACGTTATCGAAGGCACGTGAAAGAAAA
+V025A02	BU876760		Transcriptional regulation, SNF5	P. trichocarpa	CAATCCATACAGACACAATTGGCCGAGTTTCGATCCTATGAAGGTCAAGATATGCTGTACACTGGAGACA
+V025E01	BU876802		Transcriptional regulation, DEMETER; DNA Glycosylase Domain	P. trichocarpa	AGAGCACCCCGACCTCTCAAGGCCAGATTACACTTTCCAGTAAGTAGGTTGGTAAAGACAAAGAACGAGA
+V031H01	BU877253		Signal transduction, response regulator	P. trichocarpa	CATTGAAATTAACATGATCATTACAGATTACTGTATGCCAGGAATGACAGGCTACGATCTCCTAAAAAAG
+V032H12	BU877347		Alpha-3 tubulin	P. trichocarpa	TGGTTTGGGGTCTTTGCTGTTAGAACGCTTGTCTGTTGATTACGGAAAGAAGTTAAAGCTTGGATTCACC
+V037B10	BU877632		Transcriptional regualtionm PHD zinc finger	P. trichocarpa	AGGAAAAGGCTGTTCAGCCTGATCAATGATCTGCCTACTGTCTTTGAAGTTGTAACAGAAAGGAAGCCTG
+V037D09	BU877646		TF, C2H2 zinc finger	P. trichocarpa	GCAAGCCACCCGCCGCCTGGCTTTAGCTTCCTATGTTACCATACCAAATTCCATGTTCTCGACGTTTATT
+V039F10	BU877824		Transcriptional regualtion, polycomb, ESC	P. trichocarpa	CTTTAGTTGACTGGTTTAAGGCTAATGTAACTTATTTGGAATTCTAACAGCTATTTGACCCGTGATTAGT
+V041C10	BU877951		Transcriptional regualtion, helicase, SNF2-N	P. trichocarpa	AAACTCGAACCAGCATTTACTGCCACACCCCAAGTTGATTCATCGCAGATGCAATATCCACATGCAAATA
+V047A09	BU878423		Signal transduction, G-proein beta family	P. trichocarpa	TTGTTAAATTCTCGCCTAATGGAAAGTTCATTCTCGTTGCTACTCTTGATAGCACTCTTAAACTTTGGAA
+V049F05	BU878632		Transcriptional regulation, PHD zinc finger protein	P. trichocarpa	GAACTTACAGGATGCGCATTATGCAGAGGTTATGATTTTATGAGATCTGGATTTGGTCCACGCACAATTA
+V049F07	BU878634		Signal transduction, pseudo-response regulator	P. trichocarpa	AATTCCTTCGGAAACCACTCTCTGAAGATAAACTGAGGAATATATGGCAGCACGTCGTTCATAAGGCATT
+V053C07	BU878904		TF, MYB	P. trichocarpa	TCTACACTTGAACCCGAGTAGCCCATCCGGATCCGATTTGAGCGATTCAAGTATACCCGGCGTGAATTCA
+V056C05	BU879121		SET domain	P. trichocarpa	TTGCAAGTGTTCCACTTATTACCATGCAATGCGTGCTTCGAGGGCAGGATATCGCATGGAGTTGCACTGC
+V057G12	BU879250		TF, NAC	P. trichocarpa	TGATTGGTATTTCTTTAGTCACAAAGACAAGAAATATCCCACAGGGACTAGAACAAATCGAGCTACGGCT
+V059D02	BU879372		TF, MADS-box	P. trichocarpa	CTAGTTCTGGAAGGATGCATGAGTACTGCAGCCCTTCCACTACGGTGGTCGATCTGTTGGACAAGTATCA
+V060H07	BU879493		Transcriptional regulation, methyl-CpG binding	P. trichocarpa	AGATCGGATTAGGACCTCTGGCGTGACAGCTGGCACCGTAGATAAGTATTACATTGATCCTGCCTCAGGT
+V061D11	BU879538		nucleosome/ chromatin assembly, histone 4	P. trichocarpa	TGAGGGATCGGGTTTAGATTTGCTAATCAGGTTTATTTTAGGTACTGTTTTGTAAGTATAAGTGCGTGAT
+V063A06	BU879671		SET domain	P. trichocarpa	AAAATTTGGCTGTTACACTTGACAAGGTGAGATATGTAATGAGGTGTATATTTGGTGACCCAAAGCTGGC
+V063C08	BU879695		Actin	P. trichocarpa	CCTCTGTCTCCGACTTCAAAAGAATTTGTAGAAAATGGCCGATGCCGAGGATATTCAACCCCTTGTCTGT
+V063H06	BU879746		Transcriptional regulation, methyl-binding	P. trichocarpa	GATGCTAGACCTCTTGAACCTGGTGAAGCAAATCCCCTTAAATGGGTTGGTCCAGGTGATTGTACAGAAC
+SR001	X56062		Photosystem I chlorophyll a/b-binding protein	A. Thaliana	from stratagen
+SR002	X14212		RUBISCO activase	A. Thaliana	from stratagen
+SR003	U91966		RUBISCO large subunit	A. Thaliana	from stratagen
+SR004	AF159801		lipid transfer protein 4	A. Thaliana	from stratagen
+SR005	AF159803		lipid transfer protein 6	A. Thaliana	from stratagen
+SR006	AF191028		papain-type cysteine endopenptidase	A. Thaliana	from stratagen
+SR007	AF168390		root cap 1	A. Thaliana	from stratagen
+SR008	AF198054		NAC1	A. Thaliana	from stratagen
+SR009	AF247559		triosphosphate isomerase	A. Thaliana	from stratagen
+SR010	X58149		PRKase gene for ribulose-5-phosphate kinase	A. Thaliana	from stratagen
+B.Actin	X63432		?-actin	Human	from stratagen
+GapDh	NM_002046		Glyseraldehyde-3-phosphate dehydrogenase	Human	from stratagen
+!platform_table_end
+^SAMPLE = GSM77557
+!Sample_title = fb6a1
+!Sample_geo_accession = GSM77557
+!Sample_status = Public on Oct 11 2006
+!Sample_submission_date = Oct 11 2005
+!Sample_last_update_date = Oct 17 2005
+!Sample_type = RNA
+!Sample_channel_count = 1
+!Sample_source_name_ch1 = floral bud from six year old poplar
+!Sample_organism_ch1 = Populus trichocarpa
+!Sample_organism_ch1 = Populus deltoides
+!Sample_characteristics_ch1 = floral bud at age six
+!Sample_molecule_ch1 = total RNA
+!Sample_label_ch1 = cy5
+!Sample_description = wild type poplar floral bud at age six
+!Sample_data_processing = GeneXp
+!Sample_platform_id = GPL2092
+!Sample_contact_name = Jingyi,,Li
+!Sample_contact_email = JINGYI.LI@OREGONSTATE.EDU
+!Sample_contact_phone = 541-737-8496
+!Sample_contact_institute = Oregon State University
+!Sample_contact_address =  
+!Sample_contact_city = Corvallis
+!Sample_contact_zip/postal_code = 97331
+!Sample_contact_country = USA
+!Sample_series_id = GSE3457
+!Sample_data_row_count = 217
+#ID_REF = 
+#VALUE = normalized signal intensities
+!sample_table_begin
+ID_REF	VALUE
+A001P54Um	5.31
+A003P34U	8.62
+A009P50U	9.09
+A010P29U	4.84
+A031P05U	4.45
+A039P68U	5.36
+A047P36U	9.35
+A069P31U	5.81
+AF240445	10.54
+B014P39U(UB21CPA06)	8.9
+B016P21Um	7.96
+B020P33U	8.31
+C025P36U	7.48
+C025P42U	8.74
+C036P25U	10.31
+C061P33U	8.04
+C067P63U	5.54
+C092P78U	8.9
+F003P03Y	7.97
+F011P01Y	6.7
+F012P39Y	5.66
+F027P14Y	10.57
+F028P06Y	6.23
+F044P04Y	7.83
+F052P94Y	7.67
+F066P33Y	9.01
+F068P73Y	10.3
+F070P70Y	8.62
+F093P10Y	8.45
+F098P59Y	9.44
+F099P36Y	6.74
+F100P70Y	4.77
+F101P21Y	9.51
+F101P86Y	9.86
+F103P52Y	4.04
+F103P87Y	5.41
+F106P90Y	9.47
+F110P74Y	9.95
+F115P67Y	7.55
+F117P40Y	5.1
+F117P48Y	10.87
+F118P50Y	
+F119P13Y	8.66
+F119P74Y	10.45
+F121P83Y	7.11
+F128P16Y	5.21
+F129P24Y	5.36
+F131P79Y	10.04
+G070P72Y	6.6
+G074P09Y	8.87
+G095P48Y	8.83
+G105P48Y	8.06
+G126P33Y	7.37
+G134P12Y	5.1
+GA20-OX	4.84
+HB1	7.83
+HB2	9.34
+I012P09P	9.5
+I017P76P	8.27
+M101C08	12.67
+M101C11	13.32
+M102E03	7.18
+M102E09	11.57
+M103H01	11.84
+M104E08	9.41
+M111B12	11.14
+M112C09	10.76
+M116D03	11.9
+M116E04	8.34
+M118F07	7.38
+M120B06	11.76
+M122B12	11.32
+M124B09	7.47
+M125D02	9.84
+M127F08	12.91
+M129E09	12.37
+PCEN-L	6.74
+PHYA	6.26
+PHYB1	8.12
+PHYB2	6.99
+PMFT	7.75
+PTAG1	10.85
+PTAG2	10.97
+PTAP1-1B	11.38
+PTAP1-2A	13.85
+PTB2	6.7
+PTBF1	5.36
+PTCO11	13.09
+PTCO12	12.72
+PTCRY1D	8.35
+PTD	8
+PTID1L1A	9.2
+PTID1L3	7.07
+PTID1L4	9.21
+PTIR1	4.45
+PTLF	10.62
+PTPGM	11.01
+PttGA2-OX	7.71
+PttIAA1	9.14
+PttIAA2	11.8
+PttIAA4	6.86
+PttIAA5	9.98
+PttIAA6	6.54
+PTTPIN1	7.69
+PTTPIN2	8.72
+PTTPIN3	5.54
+R01B05	5.94
+R02H01	7.87
+R07C07	8.25
+R15C07	7.58
+R22G04	10.36
+R22G10	4.36
+R24E07	9.95
+R26F09	10.48
+R29F11	5.58
+R33C03	12.59
+R34B09	9.04
+R35H10	8.98
+R43C04	9.36
+R43G01	7.72
+R46E01	4.91
+R48C03	6.04
+R49E04	6.12
+R50C10	7.96
+R51DF126P	10.29
+R54A05	8.69
+R56B07	9.62
+R59E12	12
+R59F10	10.93
+R63D08	11.03
+R65B04	7.02
+R67C05	9.34
+R70F11	10.31
+R71A05	5.58
+R73H10	8.64
+R74E10	4.91
+R-AP2	12.43
+UA13CPF12	9.34
+UA35CPA11	8.42
+UA35CPG02	5.54
+UA52DPC04	8.55
+UA52DPD03	8.02
+UB10CPB06	9.02
+UB10CPB07	9.04
+UB10CPF10	7.99
+UB11CPH11	8.74
+UB18CPG04	8.51
+UB27CP09(F131P66Y)	8.84
+UB28CPA08	7.31
+UB28CPB01	8.42
+UB36DPH07	5.45
+UB53CPE02	8.99
+UB60BPD08	7.94
+UM37TC05	9.6
+UM42TF11	8.54
+UM43TE12	9.33
+UM44TA01	8.96
+UM53TE12	9.54
+UM54TA09	12.36
+UM54TC12	10.19
+UM54TF05	8.19
+UM57TC10	8.17
+UM61TC08	9.51
+UM62TB07	9.12
+UM65TE06	11.15
+UM66TB05	10.42
+UM67TB05	10.24
+UM67TE05	7.85
+UM69TD03	7.68
+UM69TF07	
+UM77TC04	9.76
+UM82TH11	5.91
+UM83TC03	8.23
+UM83TF04	4.04
+UM89TG10	10.73
+UM91TD06	8.54
+UM93TD04	8.88
+V001E09	13.39
+V001G07	10.17
+V002G11	11.51
+V003A12	6.36
+V006H03	7.64
+V006H09	9.09
+V007E07	11.16
+V008A10	7.58
+V009A10	7.74
+V009B10	12.04
+V009G10	7.79
+V012F11	6.43
+V012H04	9.41
+V012H06	8.46
+V015E04	8.06
+V016C11	6.94
+V016F11	9.46
+V017G04	8.58
+V020F08	4.7
+V021F11	7.73
+V025A02	9.54
+V025E01	8.81
+V031H01	5.88
+V032H12	11.6
+V037B10	10.1
+V037D09	7.72
+V039F10	9.18
+V041C10	8.43
+V047A09	8.85
+V049F05	9.08
+V049F07	9.71
+V053C07	9.33
+V056C05	6.58
+V057G12	3.04
+V059D02	11.35
+V060H07	6.72
+V061D11	12.81
+V063A06	8.83
+V063C08	10.53
+V063H06	7.73
+!sample_table_end
+^SAMPLE = GSM77558
+!Sample_title = fb6a2
+!Sample_geo_accession = GSM77558
+!Sample_status = Public on Oct 11 2006
+!Sample_submission_date = Oct 11 2005
+!Sample_last_update_date = Oct 17 2005
+!Sample_type = RNA
+!Sample_channel_count = 1
+!Sample_source_name_ch1 = floral bud from six year old poplar
+!Sample_organism_ch1 = Populus trichocarpa
+!Sample_organism_ch1 = Populus deltoides
+!Sample_characteristics_ch1 = floral bud at age six
+!Sample_molecule_ch1 = total RNA
+!Sample_label_ch1 = cy5
+!Sample_description = wild type poplar floral bud at age six
+!Sample_data_processing = GeneXp
+!Sample_platform_id = GPL2092
+!Sample_contact_name = Jingyi,,Li
+!Sample_contact_email = JINGYI.LI@OREGONSTATE.EDU
+!Sample_contact_phone = 541-737-8496
+!Sample_contact_institute = Oregon State University
+!Sample_contact_address =  
+!Sample_contact_city = Corvallis
+!Sample_contact_zip/postal_code = 97331
+!Sample_contact_country = USA
+!Sample_series_id = GSE3457
+!Sample_data_row_count = 217
+#ID_REF = latform]
+#VALUE = normalized signal intensities
+!sample_table_begin
+ID_REF	VALUE
+A001P54Um	4.89
+A003P34U	8.01
+A009P50U	9.16
+A010P29U	5.02
+A031P05U	5.7
+A039P68U	5.99
+A047P36U	9.18
+A069P31U	5.49
+AF240445	10.88
+B014P39U(UB21CPA06)	8.56
+B016P21Um	7.96
+B020P33U	8.4
+C025P36U	7.8
+C025P42U	9.14
+C036P25U	10.27
+C061P33U	7.78
+C067P63U	6.54
+C092P78U	10.17
+F003P03Y	8.44
+F011P01Y	6.43
+F012P39Y	5.62
+F027P14Y	10.32
+F028P06Y	6.52
+F044P04Y	7.73
+F052P94Y	7.51
+F066P33Y	9.24
+F068P73Y	9.14
+F070P70Y	8.5
+F093P10Y	8.53
+F098P59Y	8.96
+F099P36Y	6.68
+F100P70Y	4.66
+F101P21Y	8.64
+F101P86Y	10.14
+F103P52Y	4.49
+F103P87Y	5.14
+F106P90Y	9.48
+F110P74Y	9.64
+F115P67Y	8.18
+F117P40Y	4.3
+F117P48Y	10.64
+F118P50Y	7.44
+F119P13Y	8.63
+F119P74Y	9.94
+F121P83Y	7.61
+F128P16Y	5.92
+F129P24Y	6.54
+F131P79Y	9.96
+G070P72Y	6.56
+G074P09Y	9.08
+G095P48Y	8.84
+G105P48Y	8.33
+G126P33Y	7.17
+G134P12Y	5.62
+GA20-OX	5.25
+HB1	7.92
+HB2	9.27
+I012P09P	9.47
+I017P76P	8.29
+M101C08	12.44
+M101C11	13.51
+M102E03	7.4
+M102E09	11.38
+M103H01	11.97
+M104E08	9.51
+M111B12	10.88
+M112C09	11.16
+M116D03	11.95
+M116E04	8.83
+M118F07	7.18
+M120B06	11.85
+M122B12	11.08
+M124B09	6.66
+M125D02	9.71
+M127F08	12.09
+M129E09	12.45
+PCEN-L	6.33
+PHYA	5.85
+PHYB1	8.48
+PHYB2	7.53
+PMFT	7.91
+PTAG1	11.19
+PTAG2	10.9
+PTAP1-1B	11.37
+PTAP1-2A	14.15
+PTB2	7.02
+PTBF1	5.58
+PTCO11	13.22
+PTCO12	12.42
+PTCRY1D	8.3
+PTD	10.43
+PTID1L1A	9.38
+PTID1L3	6.99
+PTID1L4	9.06
+PTIR1	3.49
+PTLF	10.63
+PTPGM	11
+PttGA2-OX	7.82
+PttIAA1	9.2
+PttIAA2	11.91
+PttIAA4	6.45
+PttIAA5	9.91
+PttIAA6	7.39
+PTTPIN1	7.9
+PTTPIN2	8.61
+PTTPIN3	5.25
+R01B05	6.14
+R02H01	7.68
+R07C07	7.99
+R15C07	7.89
+R22G04	10.53
+R22G10	5.4
+R24E07	9.86
+R26F09	10.67
+R29F11	6.02
+R33C03	12.75
+R34B09	9.15
+R35H10	8.78
+R43C04	9.23
+R43G01	7.68
+R46E01	3.08
+R48C03	6.33
+R49E04	6.66
+R50C10	7.95
+R51DF126P	10.39
+R54A05	8.61
+R56B07	9.86
+R59E12	12.14
+R59F10	10.71
+R63D08	11.46
+R65B04	7.11
+R67C05	9.54
+R70F11	10.02
+R71A05	4.95
+R73H10	8.64
+R74E10	5.14
+R-AP2	12.44
+UA13CPF12	9.45
+UA35CPA11	8.51
+UA35CPG02	5.08
+UA52DPC04	9.02
+UA52DPD03	7.83
+UB10CPB06	9.26
+UB10CPB07	9.03
+UB10CPF10	7.86
+UB11CPH11	8.93
+UB18CPG04	8.57
+UB27CP09(F131P66Y)	8.82
+UB28CPA08	7.67
+UB28CPB01	8.92
+UB36DPH07	4.82
+UB53CPE02	9.03
+UB60BPD08	7.87
+UM37TC05	9.35
+UM42TF11	8.79
+UM43TE12	9.23
+UM44TA01	8.87
+UM53TE12	9.93
+UM54TA09	12.56
+UM54TC12	10.51
+UM54TF05	8.24
+UM57TC10	8.32
+UM61TC08	9.61
+UM62TB07	9.58
+UM65TE06	11.05
+UM66TB05	10.17
+UM67TB05	
+UM67TE05	7.85
+UM69TD03	7.55
+UM69TF07	5.89
+UM77TC04	10
+UM82TH11	5.82
+UM83TC03	8.35
+UM83TF04	4.74
+UM89TG10	10.73
+UM91TD06	8.99
+UM93TD04	9.03
+V001E09	13.43
+V001G07	10.04
+V002G11	11.22
+V003A12	5.7
+V006H03	7.34
+V006H09	9.08
+V007E07	11
+V008A10	7.57
+V009A10	8.22
+V009B10	12.01
+V009G10	7.99
+V012F11	5.74
+V012H04	9.23
+V012H06	8.17
+V015E04	7.97
+V016C11	5.62
+V016F11	9.51
+V017G04	8.33
+V020F08	5.49
+V021F11	8.06
+V025A02	9.77
+V025E01	8.65
+V031H01	6.49
+V032H12	11.74
+V037B10	10.47
+V037D09	7.91
+V039F10	9.48
+V041C10	8.43
+V047A09	9.08
+V049F05	9.32
+V049F07	9.93
+V053C07	9.59
+V056C05	6.14
+V057G12	3.82
+V059D02	11.53
+V060H07	7.02
+V061D11	11.67
+V063A06	8.76
+V063C08	10.07
+V063H06	7.3
+!sample_table_end