warp-lang 1.1.0__py3-none-manylinux2014_x86_64.whl → 1.2.0__py3-none-manylinux2014_x86_64.whl

warp/native/nanovdb/HostBuffer.h

@@ -0,0 +1,590 @@
+// Copyright Contributors to the OpenVDB Project
+// SPDX-License-Identifier: MPL-2.0
+
+/*!
+    @file nanovdb/HostBuffer.h
+
+    @date April 20, 2021
+
+    @brief HostBuffer - a buffer that contains a shared or private bump
+           pool to either externally or internally managed host memory.
+
+    @details This HostBuffer can be used in multiple ways, most of which are
+             demonstrated in the examples below. Memory in the pool can
+             be managed or unmanged (e.g. internal or external) and can
+             be shared between multiple buffers or belong to a single buffer.
+
+   Example that uses HostBuffer::create inside io::readGrids to create a
+   full self-managed buffer, i.e. not shared and without padding, per grid in the file.
+   @code
+        auto handles = nanovdb::io::readGrids("file.nvdb");
+   @endcode
+
+   Example that uses HostBuffer::createFull. Assuming you have a raw pointer
+   to a NanoVDB grid of unknown type, this examples shows how to create its
+   GridHandle which can be used to enquire about the grid type and meta data.
+   @code
+        void    *data;// pointer to a NanoVDB grid of unknown type
+        uint64_t size;// byte size of NanoVDB grid of unknown type
+        auto buffer = nanovdb::HostBuffer::createFull(size, data);
+        nanovdb::GridHandle<> gridHandle(std::move(buffer));
+   @endcode
+
+   Example that uses HostBuffer::createPool for internally managed host memory.
+   Suppose you want to read multiple grids in multiple files, but reuse the same
+   fixed sized memory buffer to both avoid memory fragmentation as well as
+   exceeding the fixed memory ceiling!
+   @code
+        auto pool = nanovdb::HostBuffer::createPool(1 << 30);// 1 GB memory pool
+        std::vector<std::string>> frames;// vector of grid names
+        for (int i=0; i<frames.size(); ++i) {
+            auto handles = nanovdb::io::readGrids(frames[i], 0, pool);// throws if grids in file exceed 1 GB
+            ...
+            pool.reset();// clears all handles and resets the memory pool for reuse
+        }
+   @endcode
+
+   Example that uses HostBuffer::createPool for externally managed host memory.
+   Note that in this example @c handles are allowed to outlive @c pool since
+   they internally store a shared pointer to the memory pool. However @c data
+   MUST outlive @c handles since the pool does not own its memory in this example.
+   @code
+        const size_t poolSize = 1 << 30;// 1 GB
+        void *data = std::malloc(size + NANOVDB_DATA_ALIGNMENT);// 1 GB pool with padding
+        void *buffer = nanovdb::alignPtr(data);// 32B aligned buffer
+        //void *buffer = std::aligned_alloc(NANOVDB_DATA_ALIGNMENT, poolSize);// in C++17
+        auto pool = nanovdb::HostBuffer::createPool(poolSize, buffer);
+        auto handles1 = nanovdb::io::readGrids("file1.nvdb", 0, pool);
+        auto handles2 = nanovdb::io::readGrids("file2.nvdb", 0, pool);
+        ....
+        std::free(data);
+        //std::free(buffer);
+   @endcode
+
+   Example that uses HostBuffer::createPool for externally managed host memory.
+   Note that in this example @c handles are allowed to outlive @c pool since
+   they internally store a shared pointer to the memory pool. However @c array
+   MUST outlive @c handles since the pool does not own its memory in this example.
+   @code
+        const size_t poolSize = 1 << 30;// 1 GB
+        std::unique_ptr<char[]> array(new char[size + NANOVDB_DATA_ALIGNMENT]);// scoped pool of 1 GB with padding
+        void *buffer = nanovdb::alignPtr(array.get());// 32B aligned buffer
+        auto pool = nanovdb::HostBuffer::createPool(poolSize, buffer);
+        auto handles = nanovdb::io::readGrids("file.nvdb", 0, pool);
+   @endcode
+*/
+
+#ifndef NANOVDB_HOSTBUFFER_H_HAS_BEEN_INCLUDED
+#define NANOVDB_HOSTBUFFER_H_HAS_BEEN_INCLUDED
+
+#include <nanovdb/NanoVDB.h>// for NANOVDB_DATA_ALIGNMENT;
+#include <stdint.h> //         for types like int32_t etc
+#include <cstdio> //           for fprintf
+#include <cstdlib> //          for std::malloc/std::realloc/std::free
+#include <memory>//            for std::make_shared
+#include <mutex>//             for std::mutex
+#include <unordered_set>//     for std::unordered_set
+#include <cassert>//           for assert
+#include <sstream>//           for std::stringstream
+#include <cstring>//           for memcpy
+
+#define checkPtr(ptr, msg) \
+    { \
+        ptrAssert((ptr), (msg), __FILE__, __LINE__); \
+    }
+
+namespace nanovdb {
+
+template<typename BufferT>
+struct BufferTraits
+{
+    static constexpr bool hasDeviceDual = false;
+};
+
+// ----------------------------> HostBuffer <--------------------------------------
+
+/// @brief This is a buffer that contains a shared or private pool
+///        to either externally or internally managed host memory.
+///
+/// @note  Terminology:
+///        Pool:   0 = buffer.size() < buffer.poolSize()
+///        Buffer: 0 < buffer.size() < buffer.poolSize()
+///        Full:   0 < buffer.size() = buffer.poolSize()
+///        Empty:  0 = buffer.size() = buffer.poolSize()
+class HostBuffer
+{
+    struct Pool;// forward declaration of private pool struct
+    std::shared_ptr<Pool> mPool;
+    uint64_t              mSize; // total number of bytes for the NanoVDB grid.
+    void*                 mData; // raw buffer for the NanoVDB grid.
+
+#if defined(DEBUG) || defined(_DEBUG)
+    static inline void ptrAssert(void* ptr, const char* msg, const char* file, int line, bool abort = true)
+    {
+        if (ptr == nullptr) {
+            fprintf(stderr, "NULL pointer error: %s %s %d\n", msg, file, line);
+            if (abort)
+                exit(1);
+        }
+        if (uint64_t(ptr) % NANOVDB_DATA_ALIGNMENT) {
+            fprintf(stderr, "Alignment pointer error: %s %s %d\n", msg, file, line);
+            if (abort)
+                exit(1);
+        }
+    }
+#else
+    static inline void ptrAssert(void*, const char*, const char*, int, bool = true)
+    {
+    }
+#endif
+
+public:
+    /// @brief Return a full buffer or an empty buffer
+    HostBuffer(uint64_t bufferSize = 0);
+
+     /// @brief Move copy-constructor
+    HostBuffer(HostBuffer&& other);
+
+    /// @brief Custom descructor
+    ~HostBuffer() { this->clear(); }
+
+    /// @brief Move copy assignment operation
+    HostBuffer& operator=(HostBuffer&& other);
+
+    /// @brief Disallow copy-construction
+    HostBuffer(const HostBuffer&) = delete;
+
+    /// @brief Disallow copy assignment operation
+    HostBuffer& operator=(const HostBuffer&) = delete;
+
+    /// @brief Return a pool buffer which satisfies: buffer.size == 0,
+    ///        buffer.poolSize() == poolSize, and buffer.data() == nullptr.
+    ///        If data==nullptr, memory for the pool will be allocated.
+    ///
+    /// @throw If poolSize is zero.
+    static HostBuffer createPool(uint64_t poolSize, void *data = nullptr);
+
+    /// @brief Return a full buffer which satisfies: buffer.size == bufferSize,
+    ///        buffer.poolSize() == bufferSize, and buffer.data() == data.
+    ///        If data==nullptr, memory for the pool will be allocated.
+    ///
+    /// @throw If bufferSize is zero.
+    static HostBuffer createFull(uint64_t bufferSize, void *data = nullptr);
+
+    /// @brief Return a buffer with @c bufferSize bytes managed by
+    ///        the specified memory @c pool. If none is provided, i.e.
+    ///        @c pool == nullptr or @c pool->poolSize() == 0, one is
+    ///        created with size @c bufferSize, i.e. a full buffer is returned.
+    ///
+    /// @throw If the specified @c pool has insufficient memory for
+    ///        the requested buffer size.
+    static HostBuffer create(uint64_t bufferSize, const HostBuffer* pool = nullptr);
+
+    /// @brief Initialize as a full buffer with the specified size. If data is NULL
+    ///        the memory is internally allocated.
+    void init(uint64_t bufferSize, void *data = nullptr);
+
+    //@{
+    /// @brief Retuns a pointer to the raw memory buffer managed by this allocator.
+    ///
+    /// @warning Note that the pointer can be NULL if the allocator was not initialized!
+    const void* data() const { return mData; }
+    void* data() { return mData; }
+    //@}
+
+    //@{
+    /// @brief Returns the size in bytes associated with this buffer.
+    uint64_t bufferSize() const { return mSize; }
+    uint64_t size() const { return this->bufferSize(); }
+    //@}
+
+    /// @brief Returns the size in bytes of the memory pool shared with this instance.
+    uint64_t poolSize() const;
+
+    /// @brief Return true if memory is managed (using std::malloc and std:free) by the
+    ///        shared pool in this buffer. Else memory is assumed to be managed externally.
+    bool isManaged() const;
+
+    //@{
+    /// @brief Returns true if this buffer has no memory associated with it
+    bool isEmpty() const { return !mPool || mSize == 0 || mData == nullptr; }
+    bool empty() const { return this->isEmpty(); }
+    //@}
+
+    /// @brief Return true if this is a pool, i.e. an empty buffer with a nonempty
+    ///        internal pool, i.e. this->size() == 0 and this->poolSize() != 0
+    bool isPool() const { return mSize == 0 && this->poolSize() > 0; }
+
+    /// @brief Return true if the pool exists, is nonempty but has no more available memory
+    bool isFull() const;
+
+    /// @brief Clear this buffer so it is empty.
+    void clear();
+
+    /// @brief Clears all existing buffers that are registered against the memory pool
+    ///        and resets the pool so it can be reused to create new buffers.
+    ///
+    /// @throw If this instance is not empty or contains no pool.
+    ///
+    /// @warning This method is not thread-safe!
+    void reset();
+
+    /// @brief Total number of bytes from the pool currently in use by buffers
+    uint64_t poolUsage() const;
+
+    /// @brief resize the pool size. It will attempt to resize the existing
+    ///        memory block, but if that fails a deep copy is performed.
+    ///        If @c data is not NULL it will be used as new externally
+    ///        managed memory for the pool. All registered buffers are
+    ///        updated so GridHandle::grid might return a new address (if
+    ///        deep copy was performed).
+    ///
+    /// @note  This method can be use to resize the memory pool and even
+    ///        change it from internally to externally managed memory or vice versa.
+    ///
+    /// @throw if @c poolSize is less than this->poolUsage() the used memory
+    ///        or allocations fail.
+    void resizePool(uint64_t poolSize, void *data = nullptr);
+
+}; // HostBuffer class
+
+// --------------------------> Implementation of HostBuffer::Pool <------------------------------------
+
+// This is private struct of HostBuffer so you can safely ignore the API
+struct HostBuffer::Pool
+{
+    using HashTableT = std::unordered_set<HostBuffer*>;
+    std::mutex mMutex; // mutex for updating mRegister and mFree
+    HashTableT mRegister;
+    void      *mData, *mFree;
+    uint64_t   mSize, mPadding;
+    bool       mManaged;
+
+    /// @brief External memory ctor
+    Pool(uint64_t size = 0, void* data = nullptr)
+        : mData(data)
+        , mFree(mData)
+        , mSize(size)
+        , mPadding(0)
+        , mManaged(data == nullptr)
+    {
+        if (mManaged) {
+            mData = Pool::alloc(mSize);
+            if (mData == nullptr) throw std::runtime_error("Pool::Pool malloc failed");
+        }
+        mPadding = alignmentPadding(mData);
+        if (!mManaged && mPadding != 0) {
+            throw std::runtime_error("Pool::Pool: external memory buffer is not aligned to " +
+                                     std::to_string(NANOVDB_DATA_ALIGNMENT) +
+                                     " bytes.\nHint: use nanovdb::alignPtr or std::aligned_alloc (C++17 only)");
+        }
+        mFree = util::PtrAdd(mData, mPadding);
+    }
+
+    /// @brief Custom destructor
+    ~Pool()
+    {
+        assert(mRegister.empty());
+        if (mManaged) std::free(mData);
+    }
+
+    /// @brief Disallow copy-construction
+    Pool(const Pool&) = delete;
+
+    /// @brief Disallow move-construction
+    Pool(const Pool&&) = delete;
+
+    /// @brief Disallow copy assignment operation
+    Pool& operator=(const Pool&) = delete;
+
+    /// @brief Disallow move assignment operation
+    Pool& operator=(const Pool&&) = delete;
+
+    /// @brief Return the total number of bytes used from this Pool by buffers
+    uint64_t usage() const { return util::PtrDiff(mFree, mData) - mPadding; }
+
+    /// @brief Allocate a buffer of the specified size and add it to the register
+    void add(HostBuffer* buffer, uint64_t size)
+    {
+        void *alignedFree = util::PtrAdd(mFree, alignmentPadding(mFree));
+
+        if (util::PtrAdd(alignedFree, size) > util::PtrAdd(mData, mPadding + mSize)) {
+            std::stringstream ss;
+            ss << "HostBuffer::Pool: insufficient memory\n"
+               << "\tA buffer requested " << size << " bytes with " << NANOVDB_DATA_ALIGNMENT
+               << "-bytes alignment from a pool with "
+               << mSize << " bytes of which\n\t" << (util::PtrDiff(alignedFree, mData) - mPadding)
+               << " bytes are used by " << mRegister.size() << " other buffer(s). "
+               << "Pool is " << (mManaged ? "internally" : "externally") << " managed.\n";
+            //std::cerr << ss.str();
+            throw std::runtime_error(ss.str());
+        }
+        buffer->mSize = size;
+        const std::lock_guard<std::mutex> lock(mMutex);
+        mRegister.insert(buffer);
+        buffer->mData = alignedFree;
+        mFree = util::PtrAdd(alignedFree, size);
+    }
+
+    /// @brief Remove the specified buffer from the register
+    void remove(HostBuffer *buffer)
+    {
+        const std::lock_guard<std::mutex> lock(mMutex);
+        mRegister.erase(buffer);
+    }
+
+    /// @brief Replaces buffer1 with buffer2 in the register
+    void replace(HostBuffer *buffer1, HostBuffer *buffer2)
+    {
+        const std::lock_guard<std::mutex> lock(mMutex);
+        mRegister.erase( buffer1);
+        mRegister.insert(buffer2);
+    }
+
+    /// @brief Reset the register and all its buffers
+    void reset()
+    {
+        for (HostBuffer *buffer : mRegister) {
+            buffer->mPool.reset();
+            buffer->mSize = 0;
+            buffer->mData = nullptr;
+        }
+        mRegister.clear();
+        mFree = util::PtrAdd(mData, mPadding);
+    }
+
+    /// @brief Resize this Pool and update registered buffers as needed. If data is no NULL
+    ///        it is used as externally managed memory.
+    void resize(uint64_t size, void *data = nullptr)
+    {
+        const uint64_t memUsage = this->usage();
+
+        const bool managed = (data == nullptr);
+
+        if (!managed && alignmentPadding(data) != 0) {
+            throw std::runtime_error("Pool::resize: external memory buffer is not aligned to " +
+                                     std::to_string(NANOVDB_DATA_ALIGNMENT) + " bytes");
+        }
+
+        if (memUsage > size) {
+            throw std::runtime_error("Pool::resize: insufficient memory");
+        }
+
+        uint64_t padding = 0;
+        if (mManaged && managed && size != mSize) { // managed -> managed
+            padding = mPadding;
+            data = Pool::realloc(mData, memUsage, size, padding); // performs both copy and free of mData
+        } else if (!mManaged && managed) { // un-managed -> managed
+            data = Pool::alloc(size);
+            padding = alignmentPadding(data);
+        }
+
+        if (data == nullptr) {
+            throw std::runtime_error("Pool::resize: allocation failed");
+        } else if (data != mData) {
+            void* paddedData = util::PtrAdd(data, padding);
+
+            if (!(mManaged && managed)) { // no need to copy if managed -> managed
+                memcpy(paddedData, util::PtrAdd(mData, mPadding), memUsage);
+            }
+
+            for (HostBuffer* buffer : mRegister) { // update registered buffers
+                //buffer->mData = paddedData + ptrdiff_t(buffer->mData - (mData + mPadding));
+                buffer->mData = util::PtrAdd(paddedData, util::PtrDiff(buffer->mData, util::PtrAdd(mData, mPadding)));
+            }
+            mFree = util::PtrAdd(paddedData, memUsage); // update the free pointer
+            if (mManaged && !managed) {// only free if managed -> un-managed
+                std::free(mData);
+            }
+
+            mData = data;
+            mPadding = padding;
+        }
+        mSize    = size;
+        mManaged = managed;
+    }
+    /// @brief Return true is all the memory in this pool is in use.
+    bool isFull() const
+    {
+        assert(mFree <= util::PtrAdd(mData, mPadding + mSize));
+        return mSize > 0 ? mFree == util::PtrAdd(mData, mPadding + mSize) : false;
+    }
+
+private:
+
+    static void* alloc(uint64_t size)
+    {
+//#if (__cplusplus >= 201703L)
+//    return std::aligned_alloc(NANOVDB_DATA_ALIGNMENT, size);//C++17 or newer
+//#else
+    // make sure we alloc enough space to align the result
+    return std::malloc(size + NANOVDB_DATA_ALIGNMENT);
+//#endif
+    }
+
+    static void* realloc(void* const origData,
+                         uint64_t    origSize,
+                         uint64_t    desiredSize,
+                         uint64_t&   padding)
+    {
+        // make sure we alloc enough space to align the result
+        void* data = std::realloc(origData, desiredSize + NANOVDB_DATA_ALIGNMENT);
+
+        if (data != nullptr && data != origData) {
+            uint64_t newPadding = alignmentPadding(data);
+            // Number of padding bytes may have changed -- move data if that's the case
+            if (newPadding != padding) {
+                // Realloc should not happen when shrinking down buffer, but let's be safe
+                std::memmove(util::PtrAdd(data, newPadding),
+                             util::PtrAdd(data, padding),
+                             math::Min(origSize, desiredSize));
+                padding = newPadding;
+            }
+        }
+
+        return data;
+    }
+
+};// struct HostBuffer::Pool
+
+// --------------------------> Implementation of HostBuffer <------------------------------------
+
+inline HostBuffer::HostBuffer(uint64_t size) : mPool(nullptr), mSize(size), mData(nullptr)
+{
+    if (size>0) {
+        mPool = std::make_shared<Pool>(size);
+        mData = mPool->mFree;
+        mPool->mRegister.insert(this);
+        mPool->mFree = util::PtrAdd(mPool->mFree, size);
+    }
+}
+
+inline HostBuffer::HostBuffer(HostBuffer&& other) : mPool(other.mPool), mSize(other.mSize), mData(other.mData)
+{
+    if (mPool && mSize != 0) {
+        mPool->replace(&other, this);
+    }
+    other.mPool.reset();
+    other.mSize = 0;
+    other.mData = nullptr;
+}
+
+inline void HostBuffer::init(uint64_t bufferSize, void *data)
+{
+    if (bufferSize == 0) {
+        throw std::runtime_error("HostBuffer: invalid buffer size");
+    }
+    if (mPool) {
+        mPool.reset();
+    }
+    if (!mPool || mPool->mSize != bufferSize) {
+        mPool = std::make_shared<Pool>(bufferSize, data);
+    }
+    mPool->add(this, bufferSize);
+}
+
+inline HostBuffer& HostBuffer::operator=(HostBuffer&& other)
+{
+    if (mPool) {
+        mPool->remove(this);
+    }
+    mPool = other.mPool;
+    mSize = other.mSize;
+    mData = other.mData;
+    if (mPool && mSize != 0) {
+        mPool->replace(&other, this);
+    }
+    other.mPool.reset();
+    other.mSize = 0;
+    other.mData = nullptr;
+    return *this;
+}
+
+inline uint64_t HostBuffer::poolSize() const
+{
+    return mPool ? mPool->mSize : 0u;
+}
+
+inline uint64_t HostBuffer::poolUsage() const
+{
+    return mPool ? mPool->usage(): 0u;
+}
+
+inline bool HostBuffer::isManaged() const
+{
+    return mPool ? mPool->mManaged : false;
+}
+
+inline bool HostBuffer::isFull() const
+{
+    return mPool ? mPool->isFull() : false;
+}
+
+inline HostBuffer HostBuffer::createPool(uint64_t poolSize, void *data)
+{
+    if (poolSize == 0) {
+        throw std::runtime_error("HostBuffer: invalid pool size");
+    }
+    HostBuffer buffer;
+    buffer.mPool = std::make_shared<Pool>(poolSize, data);
+    // note the buffer is NOT registered by its pool since it is not using its memory
+    buffer.mSize = 0;
+    buffer.mData = nullptr;
+    return buffer;
+}
+
+inline HostBuffer HostBuffer::createFull(uint64_t bufferSize, void *data)
+{
+    if (bufferSize == 0) {
+        throw std::runtime_error("HostBuffer: invalid buffer size");
+    }
+    HostBuffer buffer;
+    buffer.mPool = std::make_shared<Pool>(bufferSize, data);
+    buffer.mPool->add(&buffer, bufferSize);
+    return buffer;
+}
+
+inline HostBuffer HostBuffer::create(uint64_t bufferSize, const HostBuffer* pool)
+{
+    HostBuffer buffer;
+    if (pool == nullptr || !pool->mPool) {
+        buffer.mPool = std::make_shared<Pool>(bufferSize);
+    } else {
+       buffer.mPool = pool->mPool;
+    }
+    buffer.mPool->add(&buffer, bufferSize);
+    return buffer;
+}
+
+inline void HostBuffer::clear()
+{
+    if (mPool) {// remove self from the buffer register in the pool
+        mPool->remove(this);
+    }
+    mPool.reset();
+    mSize = 0;
+    mData = nullptr;
+}
+
+inline void HostBuffer::reset()
+{
+    if (this->size()>0) {
+        throw std::runtime_error("HostBuffer: only empty buffers can call reset");
+    }
+    if (!mPool) {
+        throw std::runtime_error("HostBuffer: this buffer contains no pool to reset");
+    }
+    mPool->reset();
+}
+
+inline void HostBuffer::resizePool(uint64_t size, void *data)
+{
+    if (!mPool) {
+        throw std::runtime_error("HostBuffer: this buffer contains no pool to resize");
+    }
+    mPool->resize(size, data);
+}
+
+} // namespace nanovdb
+
+#endif // end of NANOVDB_HOSTBUFFER_H_HAS_BEEN_INCLUDED