vbi 0.1.3__cp310-cp310-manylinux2014_x86_64.whl

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Files changed (121) hide show
  1. vbi/__init__.py +37 -0
  2. vbi/_version.py +17 -0
  3. vbi/dataset/__init__.py +0 -0
  4. vbi/dataset/connectivity_84/centers.txt +84 -0
  5. vbi/dataset/connectivity_84/centres.txt +84 -0
  6. vbi/dataset/connectivity_84/cortical.txt +84 -0
  7. vbi/dataset/connectivity_84/tract_lengths.txt +84 -0
  8. vbi/dataset/connectivity_84/weights.txt +84 -0
  9. vbi/dataset/connectivity_88/Aud_88.txt +88 -0
  10. vbi/dataset/connectivity_88/Bold.npz +0 -0
  11. vbi/dataset/connectivity_88/Labels.txt +17 -0
  12. vbi/dataset/connectivity_88/Region_labels.txt +88 -0
  13. vbi/dataset/connectivity_88/tract_lengths.txt +88 -0
  14. vbi/dataset/connectivity_88/weights.txt +88 -0
  15. vbi/feature_extraction/__init__.py +1 -0
  16. vbi/feature_extraction/calc_features.py +293 -0
  17. vbi/feature_extraction/features.json +535 -0
  18. vbi/feature_extraction/features.py +2124 -0
  19. vbi/feature_extraction/features_settings.py +374 -0
  20. vbi/feature_extraction/features_utils.py +1357 -0
  21. vbi/feature_extraction/infodynamics.jar +0 -0
  22. vbi/feature_extraction/utility.py +507 -0
  23. vbi/inference.py +98 -0
  24. vbi/models/__init__.py +0 -0
  25. vbi/models/cpp/__init__.py +0 -0
  26. vbi/models/cpp/_src/__init__.py +0 -0
  27. vbi/models/cpp/_src/__pycache__/mpr_sde.cpython-310.pyc +0 -0
  28. vbi/models/cpp/_src/_do.cpython-310-x86_64-linux-gnu.so +0 -0
  29. vbi/models/cpp/_src/_jr_sdde.cpython-310-x86_64-linux-gnu.so +0 -0
  30. vbi/models/cpp/_src/_jr_sde.cpython-310-x86_64-linux-gnu.so +0 -0
  31. vbi/models/cpp/_src/_km_sde.cpython-310-x86_64-linux-gnu.so +0 -0
  32. vbi/models/cpp/_src/_mpr_sde.cpython-310-x86_64-linux-gnu.so +0 -0
  33. vbi/models/cpp/_src/_vep.cpython-310-x86_64-linux-gnu.so +0 -0
  34. vbi/models/cpp/_src/_wc_ode.cpython-310-x86_64-linux-gnu.so +0 -0
  35. vbi/models/cpp/_src/bold.hpp +303 -0
  36. vbi/models/cpp/_src/do.hpp +167 -0
  37. vbi/models/cpp/_src/do.i +17 -0
  38. vbi/models/cpp/_src/do.py +467 -0
  39. vbi/models/cpp/_src/do_wrap.cxx +12811 -0
  40. vbi/models/cpp/_src/jr_sdde.hpp +352 -0
  41. vbi/models/cpp/_src/jr_sdde.i +19 -0
  42. vbi/models/cpp/_src/jr_sdde.py +688 -0
  43. vbi/models/cpp/_src/jr_sdde_wrap.cxx +18718 -0
  44. vbi/models/cpp/_src/jr_sde.hpp +264 -0
  45. vbi/models/cpp/_src/jr_sde.i +17 -0
  46. vbi/models/cpp/_src/jr_sde.py +470 -0
  47. vbi/models/cpp/_src/jr_sde_wrap.cxx +13406 -0
  48. vbi/models/cpp/_src/km_sde.hpp +158 -0
  49. vbi/models/cpp/_src/km_sde.i +19 -0
  50. vbi/models/cpp/_src/km_sde.py +671 -0
  51. vbi/models/cpp/_src/km_sde_wrap.cxx +17367 -0
  52. vbi/models/cpp/_src/makefile +52 -0
  53. vbi/models/cpp/_src/mpr_sde.hpp +327 -0
  54. vbi/models/cpp/_src/mpr_sde.i +19 -0
  55. vbi/models/cpp/_src/mpr_sde.py +711 -0
  56. vbi/models/cpp/_src/mpr_sde_wrap.cxx +18618 -0
  57. vbi/models/cpp/_src/utility.hpp +307 -0
  58. vbi/models/cpp/_src/vep.hpp +171 -0
  59. vbi/models/cpp/_src/vep.i +16 -0
  60. vbi/models/cpp/_src/vep.py +464 -0
  61. vbi/models/cpp/_src/vep_wrap.cxx +12968 -0
  62. vbi/models/cpp/_src/wc_ode.hpp +294 -0
  63. vbi/models/cpp/_src/wc_ode.i +19 -0
  64. vbi/models/cpp/_src/wc_ode.py +686 -0
  65. vbi/models/cpp/_src/wc_ode_wrap.cxx +24263 -0
  66. vbi/models/cpp/damp_oscillator.py +143 -0
  67. vbi/models/cpp/jansen_rit.py +543 -0
  68. vbi/models/cpp/km.py +187 -0
  69. vbi/models/cpp/mpr.py +289 -0
  70. vbi/models/cpp/vep.py +150 -0
  71. vbi/models/cpp/wc.py +216 -0
  72. vbi/models/cupy/__init__.py +0 -0
  73. vbi/models/cupy/bold.py +111 -0
  74. vbi/models/cupy/ghb.py +284 -0
  75. vbi/models/cupy/jansen_rit.py +473 -0
  76. vbi/models/cupy/km.py +224 -0
  77. vbi/models/cupy/mpr.py +475 -0
  78. vbi/models/cupy/mpr_modified_bold.py +12 -0
  79. vbi/models/cupy/utils.py +184 -0
  80. vbi/models/numba/__init__.py +0 -0
  81. vbi/models/numba/_ww_EI.py +444 -0
  82. vbi/models/numba/damp_oscillator.py +162 -0
  83. vbi/models/numba/ghb.py +208 -0
  84. vbi/models/numba/mpr.py +383 -0
  85. vbi/models/pytorch/__init__.py +0 -0
  86. vbi/models/pytorch/data/default_parameters.npz +0 -0
  87. vbi/models/pytorch/data/input/ROI_sim.mat +0 -0
  88. vbi/models/pytorch/data/input/fc_test.csv +68 -0
  89. vbi/models/pytorch/data/input/fc_train.csv +68 -0
  90. vbi/models/pytorch/data/input/fc_vali.csv +68 -0
  91. vbi/models/pytorch/data/input/fcd_test.mat +0 -0
  92. vbi/models/pytorch/data/input/fcd_test_high_window.mat +0 -0
  93. vbi/models/pytorch/data/input/fcd_test_low_window.mat +0 -0
  94. vbi/models/pytorch/data/input/fcd_train.mat +0 -0
  95. vbi/models/pytorch/data/input/fcd_vali.mat +0 -0
  96. vbi/models/pytorch/data/input/myelin.csv +68 -0
  97. vbi/models/pytorch/data/input/rsfc_gradient.csv +68 -0
  98. vbi/models/pytorch/data/input/run_label_testset.mat +0 -0
  99. vbi/models/pytorch/data/input/sc_test.csv +68 -0
  100. vbi/models/pytorch/data/input/sc_train.csv +68 -0
  101. vbi/models/pytorch/data/input/sc_vali.csv +68 -0
  102. vbi/models/pytorch/data/obs_kong0.npz +0 -0
  103. vbi/models/pytorch/ww_sde_kong.py +570 -0
  104. vbi/models/tvbk/__init__.py +9 -0
  105. vbi/models/tvbk/tvbk_wrapper.py +166 -0
  106. vbi/models/tvbk/utils.py +72 -0
  107. vbi/papers/__init__.py +0 -0
  108. vbi/papers/pavlides_pcb_2015/pavlides.py +211 -0
  109. vbi/tests/__init__.py +0 -0
  110. vbi/tests/_test_mpr_nb.py +36 -0
  111. vbi/tests/test_features.py +355 -0
  112. vbi/tests/test_ghb_cupy.py +90 -0
  113. vbi/tests/test_mpr_cupy.py +49 -0
  114. vbi/tests/test_mpr_numba.py +84 -0
  115. vbi/tests/test_suite.py +19 -0
  116. vbi/utils.py +402 -0
  117. vbi-0.1.3.dist-info/METADATA +166 -0
  118. vbi-0.1.3.dist-info/RECORD +121 -0
  119. vbi-0.1.3.dist-info/WHEEL +5 -0
  120. vbi-0.1.3.dist-info/licenses/LICENSE +201 -0
  121. vbi-0.1.3.dist-info/top_level.txt +1 -0
vbi/dataset/connectivity_84/weights.txt ADDED
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vbi/dataset/connectivity_88/Aud_88.txt ADDED
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1
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vbi/dataset/connectivity_88/Bold.npz ADDED
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vbi/dataset/connectivity_88/Labels.txt ADDED
@@ -0,0 +1,17 @@
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