vbi 0.1.3__cp310-cp310-manylinux2014_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- vbi/__init__.py +37 -0
- vbi/_version.py +17 -0
- vbi/dataset/__init__.py +0 -0
- vbi/dataset/connectivity_84/centers.txt +84 -0
- vbi/dataset/connectivity_84/centres.txt +84 -0
- vbi/dataset/connectivity_84/cortical.txt +84 -0
- vbi/dataset/connectivity_84/tract_lengths.txt +84 -0
- vbi/dataset/connectivity_84/weights.txt +84 -0
- vbi/dataset/connectivity_88/Aud_88.txt +88 -0
- vbi/dataset/connectivity_88/Bold.npz +0 -0
- vbi/dataset/connectivity_88/Labels.txt +17 -0
- vbi/dataset/connectivity_88/Region_labels.txt +88 -0
- vbi/dataset/connectivity_88/tract_lengths.txt +88 -0
- vbi/dataset/connectivity_88/weights.txt +88 -0
- vbi/feature_extraction/__init__.py +1 -0
- vbi/feature_extraction/calc_features.py +293 -0
- vbi/feature_extraction/features.json +535 -0
- vbi/feature_extraction/features.py +2124 -0
- vbi/feature_extraction/features_settings.py +374 -0
- vbi/feature_extraction/features_utils.py +1357 -0
- vbi/feature_extraction/infodynamics.jar +0 -0
- vbi/feature_extraction/utility.py +507 -0
- vbi/inference.py +98 -0
- vbi/models/__init__.py +0 -0
- vbi/models/cpp/__init__.py +0 -0
- vbi/models/cpp/_src/__init__.py +0 -0
- vbi/models/cpp/_src/__pycache__/mpr_sde.cpython-310.pyc +0 -0
- vbi/models/cpp/_src/_do.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_jr_sdde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_jr_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_km_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_mpr_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_vep.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_wc_ode.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/bold.hpp +303 -0
- vbi/models/cpp/_src/do.hpp +167 -0
- vbi/models/cpp/_src/do.i +17 -0
- vbi/models/cpp/_src/do.py +467 -0
- vbi/models/cpp/_src/do_wrap.cxx +12811 -0
- vbi/models/cpp/_src/jr_sdde.hpp +352 -0
- vbi/models/cpp/_src/jr_sdde.i +19 -0
- vbi/models/cpp/_src/jr_sdde.py +688 -0
- vbi/models/cpp/_src/jr_sdde_wrap.cxx +18718 -0
- vbi/models/cpp/_src/jr_sde.hpp +264 -0
- vbi/models/cpp/_src/jr_sde.i +17 -0
- vbi/models/cpp/_src/jr_sde.py +470 -0
- vbi/models/cpp/_src/jr_sde_wrap.cxx +13406 -0
- vbi/models/cpp/_src/km_sde.hpp +158 -0
- vbi/models/cpp/_src/km_sde.i +19 -0
- vbi/models/cpp/_src/km_sde.py +671 -0
- vbi/models/cpp/_src/km_sde_wrap.cxx +17367 -0
- vbi/models/cpp/_src/makefile +52 -0
- vbi/models/cpp/_src/mpr_sde.hpp +327 -0
- vbi/models/cpp/_src/mpr_sde.i +19 -0
- vbi/models/cpp/_src/mpr_sde.py +711 -0
- vbi/models/cpp/_src/mpr_sde_wrap.cxx +18618 -0
- vbi/models/cpp/_src/utility.hpp +307 -0
- vbi/models/cpp/_src/vep.hpp +171 -0
- vbi/models/cpp/_src/vep.i +16 -0
- vbi/models/cpp/_src/vep.py +464 -0
- vbi/models/cpp/_src/vep_wrap.cxx +12968 -0
- vbi/models/cpp/_src/wc_ode.hpp +294 -0
- vbi/models/cpp/_src/wc_ode.i +19 -0
- vbi/models/cpp/_src/wc_ode.py +686 -0
- vbi/models/cpp/_src/wc_ode_wrap.cxx +24263 -0
- vbi/models/cpp/damp_oscillator.py +143 -0
- vbi/models/cpp/jansen_rit.py +543 -0
- vbi/models/cpp/km.py +187 -0
- vbi/models/cpp/mpr.py +289 -0
- vbi/models/cpp/vep.py +150 -0
- vbi/models/cpp/wc.py +216 -0
- vbi/models/cupy/__init__.py +0 -0
- vbi/models/cupy/bold.py +111 -0
- vbi/models/cupy/ghb.py +284 -0
- vbi/models/cupy/jansen_rit.py +473 -0
- vbi/models/cupy/km.py +224 -0
- vbi/models/cupy/mpr.py +475 -0
- vbi/models/cupy/mpr_modified_bold.py +12 -0
- vbi/models/cupy/utils.py +184 -0
- vbi/models/numba/__init__.py +0 -0
- vbi/models/numba/_ww_EI.py +444 -0
- vbi/models/numba/damp_oscillator.py +162 -0
- vbi/models/numba/ghb.py +208 -0
- vbi/models/numba/mpr.py +383 -0
- vbi/models/pytorch/__init__.py +0 -0
- vbi/models/pytorch/data/default_parameters.npz +0 -0
- vbi/models/pytorch/data/input/ROI_sim.mat +0 -0
- vbi/models/pytorch/data/input/fc_test.csv +68 -0
- vbi/models/pytorch/data/input/fc_train.csv +68 -0
- vbi/models/pytorch/data/input/fc_vali.csv +68 -0
- vbi/models/pytorch/data/input/fcd_test.mat +0 -0
- vbi/models/pytorch/data/input/fcd_test_high_window.mat +0 -0
- vbi/models/pytorch/data/input/fcd_test_low_window.mat +0 -0
- vbi/models/pytorch/data/input/fcd_train.mat +0 -0
- vbi/models/pytorch/data/input/fcd_vali.mat +0 -0
- vbi/models/pytorch/data/input/myelin.csv +68 -0
- vbi/models/pytorch/data/input/rsfc_gradient.csv +68 -0
- vbi/models/pytorch/data/input/run_label_testset.mat +0 -0
- vbi/models/pytorch/data/input/sc_test.csv +68 -0
- vbi/models/pytorch/data/input/sc_train.csv +68 -0
- vbi/models/pytorch/data/input/sc_vali.csv +68 -0
- vbi/models/pytorch/data/obs_kong0.npz +0 -0
- vbi/models/pytorch/ww_sde_kong.py +570 -0
- vbi/models/tvbk/__init__.py +9 -0
- vbi/models/tvbk/tvbk_wrapper.py +166 -0
- vbi/models/tvbk/utils.py +72 -0
- vbi/papers/__init__.py +0 -0
- vbi/papers/pavlides_pcb_2015/pavlides.py +211 -0
- vbi/tests/__init__.py +0 -0
- vbi/tests/_test_mpr_nb.py +36 -0
- vbi/tests/test_features.py +355 -0
- vbi/tests/test_ghb_cupy.py +90 -0
- vbi/tests/test_mpr_cupy.py +49 -0
- vbi/tests/test_mpr_numba.py +84 -0
- vbi/tests/test_suite.py +19 -0
- vbi/utils.py +402 -0
- vbi-0.1.3.dist-info/METADATA +166 -0
- vbi-0.1.3.dist-info/RECORD +121 -0
- vbi-0.1.3.dist-info/WHEEL +5 -0
- vbi-0.1.3.dist-info/licenses/LICENSE +201 -0
- vbi-0.1.3.dist-info/top_level.txt +1 -0
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# This file was automatically generated by SWIG (https://www.swig.org).
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# Version 4.3.1
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#
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# Do not make changes to this file unless you know what you are doing - modify
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from sys import version_info as _swig_python_version_info
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# Import the low-level C/C++ module
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if __package__ or "." in __name__:
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from . import _km_sde
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try:
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import __builtin__
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try:
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return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
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elif hasattr(self, name) and isinstance(getattr(type(self), name), property):
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set(self, name, value)
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raise AttributeError("You cannot add instance attributes to %s" % self)
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def _swig_add_metaclass(metaclass):
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"""Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
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def wrapper(cls):
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return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
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return wrapper
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class _SwigNonDynamicMeta(type):
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"""Meta class to enforce nondynamic attributes (no new attributes) for a class"""
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__setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
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class SwigPyIterator(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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def __init__(self, *args, **kwargs):
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raise AttributeError("No constructor defined - class is abstract")
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__repr__ = _swig_repr
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__swig_destroy__ = _km_sde.delete_SwigPyIterator
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def value(self):
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return _km_sde.SwigPyIterator_value(self)
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def incr(self, n=1):
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return _km_sde.SwigPyIterator_incr(self, n)
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def decr(self, n=1):
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return _km_sde.SwigPyIterator_decr(self, n)
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def distance(self, x):
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return _km_sde.SwigPyIterator_distance(self, x)
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def equal(self, x):
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return _km_sde.SwigPyIterator_equal(self, x)
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def copy(self):
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return _km_sde.SwigPyIterator_copy(self)
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def next(self):
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def __next__(self):
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return _km_sde.SwigPyIterator___next__(self)
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def previous(self):
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def advance(self, n):
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def __eq__(self, x):
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def __ne__(self, x):
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return _km_sde.SwigPyIterator___ne__(self, x)
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def __iadd__(self, n):
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return _km_sde.SwigPyIterator___iadd__(self, n)
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def __isub__(self, n):
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return _km_sde.SwigPyIterator___isub__(self, n)
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def __add__(self, n):
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return _km_sde.SwigPyIterator___add__(self, n)
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def __sub__(self, *args):
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return _km_sde.SwigPyIterator___sub__(self, *args)
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def __iter__(self):
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return self
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# Register SwigPyIterator in _km_sde:
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_km_sde.SwigPyIterator_swigregister(SwigPyIterator)
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class IntVector(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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__repr__ = _swig_repr
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def iterator(self):
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return _km_sde.IntVector_iterator(self)
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def __iter__(self):
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return self.iterator()
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def __nonzero__(self):
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return _km_sde.IntVector___nonzero__(self)
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def __bool__(self):
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return _km_sde.IntVector___bool__(self)
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def __len__(self):
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return _km_sde.IntVector___len__(self)
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def __getslice__(self, i, j):
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return _km_sde.IntVector___getslice__(self, i, j)
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def __setslice__(self, *args):
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return _km_sde.IntVector___setslice__(self, *args)
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def __delslice__(self, i, j):
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return _km_sde.IntVector___delslice__(self, i, j)
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def __delitem__(self, *args):
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return _km_sde.IntVector___delitem__(self, *args)
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def __getitem__(self, *args):
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return _km_sde.IntVector___getitem__(self, *args)
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def __setitem__(self, *args):
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return _km_sde.IntVector___setitem__(self, *args)
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def pop(self):
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return _km_sde.IntVector_pop(self)
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def append(self, x):
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return _km_sde.IntVector_append(self, x)
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def empty(self):
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return _km_sde.IntVector_empty(self)
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def size(self):
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return _km_sde.IntVector_size(self)
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def swap(self, v):
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return _km_sde.IntVector_swap(self, v)
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def begin(self):
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return _km_sde.IntVector_begin(self)
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def end(self):
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return _km_sde.IntVector_end(self)
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def rbegin(self):
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return _km_sde.IntVector_rbegin(self)
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def rend(self):
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return _km_sde.IntVector_rend(self)
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def clear(self):
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return _km_sde.IntVector_clear(self)
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def get_allocator(self):
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return _km_sde.IntVector_get_allocator(self)
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def pop_back(self):
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return _km_sde.IntVector_pop_back(self)
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def erase(self, *args):
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return _km_sde.IntVector_erase(self, *args)
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def __init__(self, *args):
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_km_sde.IntVector_swiginit(self, _km_sde.new_IntVector(*args))
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def push_back(self, x):
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return _km_sde.IntVector_push_back(self, x)
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def front(self):
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return _km_sde.IntVector_front(self)
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def back(self):
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return _km_sde.IntVector_back(self)
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def assign(self, n, x):
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return _km_sde.IntVector_assign(self, n, x)
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def resize(self, *args):
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return _km_sde.IntVector_resize(self, *args)
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def insert(self, *args):
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return _km_sde.IntVector_insert(self, *args)
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def reserve(self, n):
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return _km_sde.IntVector_reserve(self, n)
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def capacity(self):
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return _km_sde.IntVector_capacity(self)
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__swig_destroy__ = _km_sde.delete_IntVector
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# Register IntVector in _km_sde:
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_km_sde.IntVector_swigregister(IntVector)
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class DoubleVector(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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__repr__ = _swig_repr
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def iterator(self):
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return _km_sde.DoubleVector_iterator(self)
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def __iter__(self):
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return self.iterator()
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def __nonzero__(self):
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return _km_sde.DoubleVector___nonzero__(self)
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def __bool__(self):
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return _km_sde.DoubleVector___bool__(self)
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def __len__(self):
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return _km_sde.DoubleVector___len__(self)
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def __getslice__(self, i, j):
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return _km_sde.DoubleVector___getslice__(self, i, j)
|
246
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+
|
247
|
+
def __setslice__(self, *args):
|
248
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+
return _km_sde.DoubleVector___setslice__(self, *args)
|
249
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+
|
250
|
+
def __delslice__(self, i, j):
|
251
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+
return _km_sde.DoubleVector___delslice__(self, i, j)
|
252
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+
|
253
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+
def __delitem__(self, *args):
|
254
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+
return _km_sde.DoubleVector___delitem__(self, *args)
|
255
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+
|
256
|
+
def __getitem__(self, *args):
|
257
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+
return _km_sde.DoubleVector___getitem__(self, *args)
|
258
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+
|
259
|
+
def __setitem__(self, *args):
|
260
|
+
return _km_sde.DoubleVector___setitem__(self, *args)
|
261
|
+
|
262
|
+
def pop(self):
|
263
|
+
return _km_sde.DoubleVector_pop(self)
|
264
|
+
|
265
|
+
def append(self, x):
|
266
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+
return _km_sde.DoubleVector_append(self, x)
|
267
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+
|
268
|
+
def empty(self):
|
269
|
+
return _km_sde.DoubleVector_empty(self)
|
270
|
+
|
271
|
+
def size(self):
|
272
|
+
return _km_sde.DoubleVector_size(self)
|
273
|
+
|
274
|
+
def swap(self, v):
|
275
|
+
return _km_sde.DoubleVector_swap(self, v)
|
276
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+
|
277
|
+
def begin(self):
|
278
|
+
return _km_sde.DoubleVector_begin(self)
|
279
|
+
|
280
|
+
def end(self):
|
281
|
+
return _km_sde.DoubleVector_end(self)
|
282
|
+
|
283
|
+
def rbegin(self):
|
284
|
+
return _km_sde.DoubleVector_rbegin(self)
|
285
|
+
|
286
|
+
def rend(self):
|
287
|
+
return _km_sde.DoubleVector_rend(self)
|
288
|
+
|
289
|
+
def clear(self):
|
290
|
+
return _km_sde.DoubleVector_clear(self)
|
291
|
+
|
292
|
+
def get_allocator(self):
|
293
|
+
return _km_sde.DoubleVector_get_allocator(self)
|
294
|
+
|
295
|
+
def pop_back(self):
|
296
|
+
return _km_sde.DoubleVector_pop_back(self)
|
297
|
+
|
298
|
+
def erase(self, *args):
|
299
|
+
return _km_sde.DoubleVector_erase(self, *args)
|
300
|
+
|
301
|
+
def __init__(self, *args):
|
302
|
+
_km_sde.DoubleVector_swiginit(self, _km_sde.new_DoubleVector(*args))
|
303
|
+
|
304
|
+
def push_back(self, x):
|
305
|
+
return _km_sde.DoubleVector_push_back(self, x)
|
306
|
+
|
307
|
+
def front(self):
|
308
|
+
return _km_sde.DoubleVector_front(self)
|
309
|
+
|
310
|
+
def back(self):
|
311
|
+
return _km_sde.DoubleVector_back(self)
|
312
|
+
|
313
|
+
def assign(self, n, x):
|
314
|
+
return _km_sde.DoubleVector_assign(self, n, x)
|
315
|
+
|
316
|
+
def resize(self, *args):
|
317
|
+
return _km_sde.DoubleVector_resize(self, *args)
|
318
|
+
|
319
|
+
def insert(self, *args):
|
320
|
+
return _km_sde.DoubleVector_insert(self, *args)
|
321
|
+
|
322
|
+
def reserve(self, n):
|
323
|
+
return _km_sde.DoubleVector_reserve(self, n)
|
324
|
+
|
325
|
+
def capacity(self):
|
326
|
+
return _km_sde.DoubleVector_capacity(self)
|
327
|
+
__swig_destroy__ = _km_sde.delete_DoubleVector
|
328
|
+
|
329
|
+
# Register DoubleVector in _km_sde:
|
330
|
+
_km_sde.DoubleVector_swigregister(DoubleVector)
|
331
|
+
class DoubleVector2(object):
|
332
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
333
|
+
__repr__ = _swig_repr
|
334
|
+
|
335
|
+
def iterator(self):
|
336
|
+
return _km_sde.DoubleVector2_iterator(self)
|
337
|
+
def __iter__(self):
|
338
|
+
return self.iterator()
|
339
|
+
|
340
|
+
def __nonzero__(self):
|
341
|
+
return _km_sde.DoubleVector2___nonzero__(self)
|
342
|
+
|
343
|
+
def __bool__(self):
|
344
|
+
return _km_sde.DoubleVector2___bool__(self)
|
345
|
+
|
346
|
+
def __len__(self):
|
347
|
+
return _km_sde.DoubleVector2___len__(self)
|
348
|
+
|
349
|
+
def __getslice__(self, i, j):
|
350
|
+
return _km_sde.DoubleVector2___getslice__(self, i, j)
|
351
|
+
|
352
|
+
def __setslice__(self, *args):
|
353
|
+
return _km_sde.DoubleVector2___setslice__(self, *args)
|
354
|
+
|
355
|
+
def __delslice__(self, i, j):
|
356
|
+
return _km_sde.DoubleVector2___delslice__(self, i, j)
|
357
|
+
|
358
|
+
def __delitem__(self, *args):
|
359
|
+
return _km_sde.DoubleVector2___delitem__(self, *args)
|
360
|
+
|
361
|
+
def __getitem__(self, *args):
|
362
|
+
return _km_sde.DoubleVector2___getitem__(self, *args)
|
363
|
+
|
364
|
+
def __setitem__(self, *args):
|
365
|
+
return _km_sde.DoubleVector2___setitem__(self, *args)
|
366
|
+
|
367
|
+
def pop(self):
|
368
|
+
return _km_sde.DoubleVector2_pop(self)
|
369
|
+
|
370
|
+
def append(self, x):
|
371
|
+
return _km_sde.DoubleVector2_append(self, x)
|
372
|
+
|
373
|
+
def empty(self):
|
374
|
+
return _km_sde.DoubleVector2_empty(self)
|
375
|
+
|
376
|
+
def size(self):
|
377
|
+
return _km_sde.DoubleVector2_size(self)
|
378
|
+
|
379
|
+
def swap(self, v):
|
380
|
+
return _km_sde.DoubleVector2_swap(self, v)
|
381
|
+
|
382
|
+
def begin(self):
|
383
|
+
return _km_sde.DoubleVector2_begin(self)
|
384
|
+
|
385
|
+
def end(self):
|
386
|
+
return _km_sde.DoubleVector2_end(self)
|
387
|
+
|
388
|
+
def rbegin(self):
|
389
|
+
return _km_sde.DoubleVector2_rbegin(self)
|
390
|
+
|
391
|
+
def rend(self):
|
392
|
+
return _km_sde.DoubleVector2_rend(self)
|
393
|
+
|
394
|
+
def clear(self):
|
395
|
+
return _km_sde.DoubleVector2_clear(self)
|
396
|
+
|
397
|
+
def get_allocator(self):
|
398
|
+
return _km_sde.DoubleVector2_get_allocator(self)
|
399
|
+
|
400
|
+
def pop_back(self):
|
401
|
+
return _km_sde.DoubleVector2_pop_back(self)
|
402
|
+
|
403
|
+
def erase(self, *args):
|
404
|
+
return _km_sde.DoubleVector2_erase(self, *args)
|
405
|
+
|
406
|
+
def __init__(self, *args):
|
407
|
+
_km_sde.DoubleVector2_swiginit(self, _km_sde.new_DoubleVector2(*args))
|
408
|
+
|
409
|
+
def push_back(self, x):
|
410
|
+
return _km_sde.DoubleVector2_push_back(self, x)
|
411
|
+
|
412
|
+
def front(self):
|
413
|
+
return _km_sde.DoubleVector2_front(self)
|
414
|
+
|
415
|
+
def back(self):
|
416
|
+
return _km_sde.DoubleVector2_back(self)
|
417
|
+
|
418
|
+
def assign(self, n, x):
|
419
|
+
return _km_sde.DoubleVector2_assign(self, n, x)
|
420
|
+
|
421
|
+
def resize(self, *args):
|
422
|
+
return _km_sde.DoubleVector2_resize(self, *args)
|
423
|
+
|
424
|
+
def insert(self, *args):
|
425
|
+
return _km_sde.DoubleVector2_insert(self, *args)
|
426
|
+
|
427
|
+
def reserve(self, n):
|
428
|
+
return _km_sde.DoubleVector2_reserve(self, n)
|
429
|
+
|
430
|
+
def capacity(self):
|
431
|
+
return _km_sde.DoubleVector2_capacity(self)
|
432
|
+
__swig_destroy__ = _km_sde.delete_DoubleVector2
|
433
|
+
|
434
|
+
# Register DoubleVector2 in _km_sde:
|
435
|
+
_km_sde.DoubleVector2_swigregister(DoubleVector2)
|
436
|
+
class SingleVector(object):
|
437
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
438
|
+
__repr__ = _swig_repr
|
439
|
+
|
440
|
+
def iterator(self):
|
441
|
+
return _km_sde.SingleVector_iterator(self)
|
442
|
+
def __iter__(self):
|
443
|
+
return self.iterator()
|
444
|
+
|
445
|
+
def __nonzero__(self):
|
446
|
+
return _km_sde.SingleVector___nonzero__(self)
|
447
|
+
|
448
|
+
def __bool__(self):
|
449
|
+
return _km_sde.SingleVector___bool__(self)
|
450
|
+
|
451
|
+
def __len__(self):
|
452
|
+
return _km_sde.SingleVector___len__(self)
|
453
|
+
|
454
|
+
def __getslice__(self, i, j):
|
455
|
+
return _km_sde.SingleVector___getslice__(self, i, j)
|
456
|
+
|
457
|
+
def __setslice__(self, *args):
|
458
|
+
return _km_sde.SingleVector___setslice__(self, *args)
|
459
|
+
|
460
|
+
def __delslice__(self, i, j):
|
461
|
+
return _km_sde.SingleVector___delslice__(self, i, j)
|
462
|
+
|
463
|
+
def __delitem__(self, *args):
|
464
|
+
return _km_sde.SingleVector___delitem__(self, *args)
|
465
|
+
|
466
|
+
def __getitem__(self, *args):
|
467
|
+
return _km_sde.SingleVector___getitem__(self, *args)
|
468
|
+
|
469
|
+
def __setitem__(self, *args):
|
470
|
+
return _km_sde.SingleVector___setitem__(self, *args)
|
471
|
+
|
472
|
+
def pop(self):
|
473
|
+
return _km_sde.SingleVector_pop(self)
|
474
|
+
|
475
|
+
def append(self, x):
|
476
|
+
return _km_sde.SingleVector_append(self, x)
|
477
|
+
|
478
|
+
def empty(self):
|
479
|
+
return _km_sde.SingleVector_empty(self)
|
480
|
+
|
481
|
+
def size(self):
|
482
|
+
return _km_sde.SingleVector_size(self)
|
483
|
+
|
484
|
+
def swap(self, v):
|
485
|
+
return _km_sde.SingleVector_swap(self, v)
|
486
|
+
|
487
|
+
def begin(self):
|
488
|
+
return _km_sde.SingleVector_begin(self)
|
489
|
+
|
490
|
+
def end(self):
|
491
|
+
return _km_sde.SingleVector_end(self)
|
492
|
+
|
493
|
+
def rbegin(self):
|
494
|
+
return _km_sde.SingleVector_rbegin(self)
|
495
|
+
|
496
|
+
def rend(self):
|
497
|
+
return _km_sde.SingleVector_rend(self)
|
498
|
+
|
499
|
+
def clear(self):
|
500
|
+
return _km_sde.SingleVector_clear(self)
|
501
|
+
|
502
|
+
def get_allocator(self):
|
503
|
+
return _km_sde.SingleVector_get_allocator(self)
|
504
|
+
|
505
|
+
def pop_back(self):
|
506
|
+
return _km_sde.SingleVector_pop_back(self)
|
507
|
+
|
508
|
+
def erase(self, *args):
|
509
|
+
return _km_sde.SingleVector_erase(self, *args)
|
510
|
+
|
511
|
+
def __init__(self, *args):
|
512
|
+
_km_sde.SingleVector_swiginit(self, _km_sde.new_SingleVector(*args))
|
513
|
+
|
514
|
+
def push_back(self, x):
|
515
|
+
return _km_sde.SingleVector_push_back(self, x)
|
516
|
+
|
517
|
+
def front(self):
|
518
|
+
return _km_sde.SingleVector_front(self)
|
519
|
+
|
520
|
+
def back(self):
|
521
|
+
return _km_sde.SingleVector_back(self)
|
522
|
+
|
523
|
+
def assign(self, n, x):
|
524
|
+
return _km_sde.SingleVector_assign(self, n, x)
|
525
|
+
|
526
|
+
def resize(self, *args):
|
527
|
+
return _km_sde.SingleVector_resize(self, *args)
|
528
|
+
|
529
|
+
def insert(self, *args):
|
530
|
+
return _km_sde.SingleVector_insert(self, *args)
|
531
|
+
|
532
|
+
def reserve(self, n):
|
533
|
+
return _km_sde.SingleVector_reserve(self, n)
|
534
|
+
|
535
|
+
def capacity(self):
|
536
|
+
return _km_sde.SingleVector_capacity(self)
|
537
|
+
__swig_destroy__ = _km_sde.delete_SingleVector
|
538
|
+
|
539
|
+
# Register SingleVector in _km_sde:
|
540
|
+
_km_sde.SingleVector_swigregister(SingleVector)
|
541
|
+
class SingleVector2(object):
|
542
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
543
|
+
__repr__ = _swig_repr
|
544
|
+
|
545
|
+
def iterator(self):
|
546
|
+
return _km_sde.SingleVector2_iterator(self)
|
547
|
+
def __iter__(self):
|
548
|
+
return self.iterator()
|
549
|
+
|
550
|
+
def __nonzero__(self):
|
551
|
+
return _km_sde.SingleVector2___nonzero__(self)
|
552
|
+
|
553
|
+
def __bool__(self):
|
554
|
+
return _km_sde.SingleVector2___bool__(self)
|
555
|
+
|
556
|
+
def __len__(self):
|
557
|
+
return _km_sde.SingleVector2___len__(self)
|
558
|
+
|
559
|
+
def __getslice__(self, i, j):
|
560
|
+
return _km_sde.SingleVector2___getslice__(self, i, j)
|
561
|
+
|
562
|
+
def __setslice__(self, *args):
|
563
|
+
return _km_sde.SingleVector2___setslice__(self, *args)
|
564
|
+
|
565
|
+
def __delslice__(self, i, j):
|
566
|
+
return _km_sde.SingleVector2___delslice__(self, i, j)
|
567
|
+
|
568
|
+
def __delitem__(self, *args):
|
569
|
+
return _km_sde.SingleVector2___delitem__(self, *args)
|
570
|
+
|
571
|
+
def __getitem__(self, *args):
|
572
|
+
return _km_sde.SingleVector2___getitem__(self, *args)
|
573
|
+
|
574
|
+
def __setitem__(self, *args):
|
575
|
+
return _km_sde.SingleVector2___setitem__(self, *args)
|
576
|
+
|
577
|
+
def pop(self):
|
578
|
+
return _km_sde.SingleVector2_pop(self)
|
579
|
+
|
580
|
+
def append(self, x):
|
581
|
+
return _km_sde.SingleVector2_append(self, x)
|
582
|
+
|
583
|
+
def empty(self):
|
584
|
+
return _km_sde.SingleVector2_empty(self)
|
585
|
+
|
586
|
+
def size(self):
|
587
|
+
return _km_sde.SingleVector2_size(self)
|
588
|
+
|
589
|
+
def swap(self, v):
|
590
|
+
return _km_sde.SingleVector2_swap(self, v)
|
591
|
+
|
592
|
+
def begin(self):
|
593
|
+
return _km_sde.SingleVector2_begin(self)
|
594
|
+
|
595
|
+
def end(self):
|
596
|
+
return _km_sde.SingleVector2_end(self)
|
597
|
+
|
598
|
+
def rbegin(self):
|
599
|
+
return _km_sde.SingleVector2_rbegin(self)
|
600
|
+
|
601
|
+
def rend(self):
|
602
|
+
return _km_sde.SingleVector2_rend(self)
|
603
|
+
|
604
|
+
def clear(self):
|
605
|
+
return _km_sde.SingleVector2_clear(self)
|
606
|
+
|
607
|
+
def get_allocator(self):
|
608
|
+
return _km_sde.SingleVector2_get_allocator(self)
|
609
|
+
|
610
|
+
def pop_back(self):
|
611
|
+
return _km_sde.SingleVector2_pop_back(self)
|
612
|
+
|
613
|
+
def erase(self, *args):
|
614
|
+
return _km_sde.SingleVector2_erase(self, *args)
|
615
|
+
|
616
|
+
def __init__(self, *args):
|
617
|
+
_km_sde.SingleVector2_swiginit(self, _km_sde.new_SingleVector2(*args))
|
618
|
+
|
619
|
+
def push_back(self, x):
|
620
|
+
return _km_sde.SingleVector2_push_back(self, x)
|
621
|
+
|
622
|
+
def front(self):
|
623
|
+
return _km_sde.SingleVector2_front(self)
|
624
|
+
|
625
|
+
def back(self):
|
626
|
+
return _km_sde.SingleVector2_back(self)
|
627
|
+
|
628
|
+
def assign(self, n, x):
|
629
|
+
return _km_sde.SingleVector2_assign(self, n, x)
|
630
|
+
|
631
|
+
def resize(self, *args):
|
632
|
+
return _km_sde.SingleVector2_resize(self, *args)
|
633
|
+
|
634
|
+
def insert(self, *args):
|
635
|
+
return _km_sde.SingleVector2_insert(self, *args)
|
636
|
+
|
637
|
+
def reserve(self, n):
|
638
|
+
return _km_sde.SingleVector2_reserve(self, n)
|
639
|
+
|
640
|
+
def capacity(self):
|
641
|
+
return _km_sde.SingleVector2_capacity(self)
|
642
|
+
__swig_destroy__ = _km_sde.delete_SingleVector2
|
643
|
+
|
644
|
+
# Register SingleVector2 in _km_sde:
|
645
|
+
_km_sde.SingleVector2_swigregister(SingleVector2)
|
646
|
+
class KM_sde(object):
|
647
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
648
|
+
__repr__ = _swig_repr
|
649
|
+
|
650
|
+
def __init__(self, dt, t_initial, t_transition, t_end, G, noise_amp, theta, omega, alpha, weights, fix_seed=0, num_threads=1):
|
651
|
+
_km_sde.KM_sde_swiginit(self, _km_sde.new_KM_sde(dt, t_initial, t_transition, t_end, G, noise_amp, theta, omega, alpha, weights, fix_seed, num_threads))
|
652
|
+
|
653
|
+
def rhs_f(self, theta, dtheta, arg4):
|
654
|
+
return _km_sde.KM_sde_rhs_f(self, theta, dtheta, arg4)
|
655
|
+
|
656
|
+
def heun(self, y, t):
|
657
|
+
return _km_sde.KM_sde_heun(self, y, t)
|
658
|
+
|
659
|
+
def IntegrateHeun(self):
|
660
|
+
return _km_sde.KM_sde_IntegrateHeun(self)
|
661
|
+
|
662
|
+
def get_times(self):
|
663
|
+
return _km_sde.KM_sde_get_times(self)
|
664
|
+
|
665
|
+
def get_theta(self):
|
666
|
+
return _km_sde.KM_sde_get_theta(self)
|
667
|
+
__swig_destroy__ = _km_sde.delete_KM_sde
|
668
|
+
|
669
|
+
# Register KM_sde in _km_sde:
|
670
|
+
_km_sde.KM_sde_swigregister(KM_sde)
|
671
|
+
|