vbi 0.1.3__cp310-cp310-manylinux2014_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- vbi/__init__.py +37 -0
- vbi/_version.py +17 -0
- vbi/dataset/__init__.py +0 -0
- vbi/dataset/connectivity_84/centers.txt +84 -0
- vbi/dataset/connectivity_84/centres.txt +84 -0
- vbi/dataset/connectivity_84/cortical.txt +84 -0
- vbi/dataset/connectivity_84/tract_lengths.txt +84 -0
- vbi/dataset/connectivity_84/weights.txt +84 -0
- vbi/dataset/connectivity_88/Aud_88.txt +88 -0
- vbi/dataset/connectivity_88/Bold.npz +0 -0
- vbi/dataset/connectivity_88/Labels.txt +17 -0
- vbi/dataset/connectivity_88/Region_labels.txt +88 -0
- vbi/dataset/connectivity_88/tract_lengths.txt +88 -0
- vbi/dataset/connectivity_88/weights.txt +88 -0
- vbi/feature_extraction/__init__.py +1 -0
- vbi/feature_extraction/calc_features.py +293 -0
- vbi/feature_extraction/features.json +535 -0
- vbi/feature_extraction/features.py +2124 -0
- vbi/feature_extraction/features_settings.py +374 -0
- vbi/feature_extraction/features_utils.py +1357 -0
- vbi/feature_extraction/infodynamics.jar +0 -0
- vbi/feature_extraction/utility.py +507 -0
- vbi/inference.py +98 -0
- vbi/models/__init__.py +0 -0
- vbi/models/cpp/__init__.py +0 -0
- vbi/models/cpp/_src/__init__.py +0 -0
- vbi/models/cpp/_src/__pycache__/mpr_sde.cpython-310.pyc +0 -0
- vbi/models/cpp/_src/_do.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_jr_sdde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_jr_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_km_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_mpr_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_vep.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_wc_ode.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/bold.hpp +303 -0
- vbi/models/cpp/_src/do.hpp +167 -0
- vbi/models/cpp/_src/do.i +17 -0
- vbi/models/cpp/_src/do.py +467 -0
- vbi/models/cpp/_src/do_wrap.cxx +12811 -0
- vbi/models/cpp/_src/jr_sdde.hpp +352 -0
- vbi/models/cpp/_src/jr_sdde.i +19 -0
- vbi/models/cpp/_src/jr_sdde.py +688 -0
- vbi/models/cpp/_src/jr_sdde_wrap.cxx +18718 -0
- vbi/models/cpp/_src/jr_sde.hpp +264 -0
- vbi/models/cpp/_src/jr_sde.i +17 -0
- vbi/models/cpp/_src/jr_sde.py +470 -0
- vbi/models/cpp/_src/jr_sde_wrap.cxx +13406 -0
- vbi/models/cpp/_src/km_sde.hpp +158 -0
- vbi/models/cpp/_src/km_sde.i +19 -0
- vbi/models/cpp/_src/km_sde.py +671 -0
- vbi/models/cpp/_src/km_sde_wrap.cxx +17367 -0
- vbi/models/cpp/_src/makefile +52 -0
- vbi/models/cpp/_src/mpr_sde.hpp +327 -0
- vbi/models/cpp/_src/mpr_sde.i +19 -0
- vbi/models/cpp/_src/mpr_sde.py +711 -0
- vbi/models/cpp/_src/mpr_sde_wrap.cxx +18618 -0
- vbi/models/cpp/_src/utility.hpp +307 -0
- vbi/models/cpp/_src/vep.hpp +171 -0
- vbi/models/cpp/_src/vep.i +16 -0
- vbi/models/cpp/_src/vep.py +464 -0
- vbi/models/cpp/_src/vep_wrap.cxx +12968 -0
- vbi/models/cpp/_src/wc_ode.hpp +294 -0
- vbi/models/cpp/_src/wc_ode.i +19 -0
- vbi/models/cpp/_src/wc_ode.py +686 -0
- vbi/models/cpp/_src/wc_ode_wrap.cxx +24263 -0
- vbi/models/cpp/damp_oscillator.py +143 -0
- vbi/models/cpp/jansen_rit.py +543 -0
- vbi/models/cpp/km.py +187 -0
- vbi/models/cpp/mpr.py +289 -0
- vbi/models/cpp/vep.py +150 -0
- vbi/models/cpp/wc.py +216 -0
- vbi/models/cupy/__init__.py +0 -0
- vbi/models/cupy/bold.py +111 -0
- vbi/models/cupy/ghb.py +284 -0
- vbi/models/cupy/jansen_rit.py +473 -0
- vbi/models/cupy/km.py +224 -0
- vbi/models/cupy/mpr.py +475 -0
- vbi/models/cupy/mpr_modified_bold.py +12 -0
- vbi/models/cupy/utils.py +184 -0
- vbi/models/numba/__init__.py +0 -0
- vbi/models/numba/_ww_EI.py +444 -0
- vbi/models/numba/damp_oscillator.py +162 -0
- vbi/models/numba/ghb.py +208 -0
- vbi/models/numba/mpr.py +383 -0
- vbi/models/pytorch/__init__.py +0 -0
- vbi/models/pytorch/data/default_parameters.npz +0 -0
- vbi/models/pytorch/data/input/ROI_sim.mat +0 -0
- vbi/models/pytorch/data/input/fc_test.csv +68 -0
- vbi/models/pytorch/data/input/fc_train.csv +68 -0
- vbi/models/pytorch/data/input/fc_vali.csv +68 -0
- vbi/models/pytorch/data/input/fcd_test.mat +0 -0
- vbi/models/pytorch/data/input/fcd_test_high_window.mat +0 -0
- vbi/models/pytorch/data/input/fcd_test_low_window.mat +0 -0
- vbi/models/pytorch/data/input/fcd_train.mat +0 -0
- vbi/models/pytorch/data/input/fcd_vali.mat +0 -0
- vbi/models/pytorch/data/input/myelin.csv +68 -0
- vbi/models/pytorch/data/input/rsfc_gradient.csv +68 -0
- vbi/models/pytorch/data/input/run_label_testset.mat +0 -0
- vbi/models/pytorch/data/input/sc_test.csv +68 -0
- vbi/models/pytorch/data/input/sc_train.csv +68 -0
- vbi/models/pytorch/data/input/sc_vali.csv +68 -0
- vbi/models/pytorch/data/obs_kong0.npz +0 -0
- vbi/models/pytorch/ww_sde_kong.py +570 -0
- vbi/models/tvbk/__init__.py +9 -0
- vbi/models/tvbk/tvbk_wrapper.py +166 -0
- vbi/models/tvbk/utils.py +72 -0
- vbi/papers/__init__.py +0 -0
- vbi/papers/pavlides_pcb_2015/pavlides.py +211 -0
- vbi/tests/__init__.py +0 -0
- vbi/tests/_test_mpr_nb.py +36 -0
- vbi/tests/test_features.py +355 -0
- vbi/tests/test_ghb_cupy.py +90 -0
- vbi/tests/test_mpr_cupy.py +49 -0
- vbi/tests/test_mpr_numba.py +84 -0
- vbi/tests/test_suite.py +19 -0
- vbi/utils.py +402 -0
- vbi-0.1.3.dist-info/METADATA +166 -0
- vbi-0.1.3.dist-info/RECORD +121 -0
- vbi-0.1.3.dist-info/WHEEL +5 -0
- vbi-0.1.3.dist-info/licenses/LICENSE +201 -0
- vbi-0.1.3.dist-info/top_level.txt +1 -0
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# This file was automatically generated by SWIG (https://www.swig.org).
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# Version 4.3.1
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#
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# Do not make changes to this file unless you know what you are doing - modify
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# the SWIG interface file instead.
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from sys import version_info as _swig_python_version_info
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# Import the low-level C/C++ module
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if __package__ or "." in __name__:
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from . import _mpr_sde
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else:
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import _mpr_sde
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try:
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import builtins as __builtin__
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except ImportError:
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import __builtin__
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def _swig_repr(self):
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try:
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strthis = "proxy of " + self.this.__repr__()
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except __builtin__.Exception:
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strthis = ""
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return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
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def _swig_setattr_nondynamic_instance_variable(set):
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def set_instance_attr(self, name, value):
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if name == "this":
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set(self, name, value)
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elif name == "thisown":
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self.this.own(value)
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elif hasattr(self, name) and isinstance(getattr(type(self), name), property):
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set(self, name, value)
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else:
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raise AttributeError("You cannot add instance attributes to %s" % self)
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return set_instance_attr
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def _swig_setattr_nondynamic_class_variable(set):
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def set_class_attr(cls, name, value):
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if hasattr(cls, name) and not isinstance(getattr(cls, name), property):
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set(cls, name, value)
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raise AttributeError("You cannot add class attributes to %s" % cls)
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return set_class_attr
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def _swig_add_metaclass(metaclass):
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"""Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
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def wrapper(cls):
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return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
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return wrapper
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class _SwigNonDynamicMeta(type):
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"""Meta class to enforce nondynamic attributes (no new attributes) for a class"""
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__setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
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class SwigPyIterator(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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def __init__(self, *args, **kwargs):
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raise AttributeError("No constructor defined - class is abstract")
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__repr__ = _swig_repr
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__swig_destroy__ = _mpr_sde.delete_SwigPyIterator
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def value(self):
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return _mpr_sde.SwigPyIterator_value(self)
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def incr(self, n=1):
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return _mpr_sde.SwigPyIterator_incr(self, n)
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def decr(self, n=1):
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return _mpr_sde.SwigPyIterator_decr(self, n)
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def distance(self, x):
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return _mpr_sde.SwigPyIterator_distance(self, x)
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def equal(self, x):
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return _mpr_sde.SwigPyIterator_equal(self, x)
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def copy(self):
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return _mpr_sde.SwigPyIterator_copy(self)
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def next(self):
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return _mpr_sde.SwigPyIterator_next(self)
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def __next__(self):
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return _mpr_sde.SwigPyIterator___next__(self)
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def previous(self):
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return _mpr_sde.SwigPyIterator_previous(self)
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def advance(self, n):
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return _mpr_sde.SwigPyIterator_advance(self, n)
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def __eq__(self, x):
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return _mpr_sde.SwigPyIterator___eq__(self, x)
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def __ne__(self, x):
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return _mpr_sde.SwigPyIterator___ne__(self, x)
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def __iadd__(self, n):
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return _mpr_sde.SwigPyIterator___iadd__(self, n)
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def __isub__(self, n):
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return _mpr_sde.SwigPyIterator___isub__(self, n)
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def __add__(self, n):
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return _mpr_sde.SwigPyIterator___add__(self, n)
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def __sub__(self, *args):
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return _mpr_sde.SwigPyIterator___sub__(self, *args)
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def __iter__(self):
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return self
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# Register SwigPyIterator in _mpr_sde:
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_mpr_sde.SwigPyIterator_swigregister(SwigPyIterator)
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class IntVector(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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__repr__ = _swig_repr
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def iterator(self):
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return _mpr_sde.IntVector_iterator(self)
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def __iter__(self):
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return self.iterator()
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def __nonzero__(self):
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return _mpr_sde.IntVector___nonzero__(self)
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def __bool__(self):
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return _mpr_sde.IntVector___bool__(self)
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def __len__(self):
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return _mpr_sde.IntVector___len__(self)
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def __getslice__(self, i, j):
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return _mpr_sde.IntVector___getslice__(self, i, j)
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def __setslice__(self, *args):
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return _mpr_sde.IntVector___setslice__(self, *args)
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def __delslice__(self, i, j):
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return _mpr_sde.IntVector___delslice__(self, i, j)
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def __delitem__(self, *args):
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return _mpr_sde.IntVector___delitem__(self, *args)
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def __getitem__(self, *args):
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return _mpr_sde.IntVector___getitem__(self, *args)
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def __setitem__(self, *args):
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return _mpr_sde.IntVector___setitem__(self, *args)
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def pop(self):
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return _mpr_sde.IntVector_pop(self)
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def append(self, x):
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return _mpr_sde.IntVector_append(self, x)
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def empty(self):
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return _mpr_sde.IntVector_empty(self)
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def size(self):
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return _mpr_sde.IntVector_size(self)
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def swap(self, v):
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return _mpr_sde.IntVector_swap(self, v)
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def begin(self):
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return _mpr_sde.IntVector_begin(self)
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def end(self):
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return _mpr_sde.IntVector_end(self)
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def rbegin(self):
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return _mpr_sde.IntVector_rbegin(self)
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def rend(self):
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return _mpr_sde.IntVector_rend(self)
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def clear(self):
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return _mpr_sde.IntVector_clear(self)
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def get_allocator(self):
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return _mpr_sde.IntVector_get_allocator(self)
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def pop_back(self):
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return _mpr_sde.IntVector_pop_back(self)
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def erase(self, *args):
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return _mpr_sde.IntVector_erase(self, *args)
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def __init__(self, *args):
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_mpr_sde.IntVector_swiginit(self, _mpr_sde.new_IntVector(*args))
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def push_back(self, x):
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return _mpr_sde.IntVector_push_back(self, x)
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def front(self):
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return _mpr_sde.IntVector_front(self)
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def back(self):
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return _mpr_sde.IntVector_back(self)
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def assign(self, n, x):
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return _mpr_sde.IntVector_assign(self, n, x)
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def resize(self, *args):
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return _mpr_sde.IntVector_resize(self, *args)
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def insert(self, *args):
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return _mpr_sde.IntVector_insert(self, *args)
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def reserve(self, n):
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return _mpr_sde.IntVector_reserve(self, n)
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def capacity(self):
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return _mpr_sde.IntVector_capacity(self)
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__swig_destroy__ = _mpr_sde.delete_IntVector
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# Register IntVector in _mpr_sde:
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_mpr_sde.IntVector_swigregister(IntVector)
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class DoubleVector(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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__repr__ = _swig_repr
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def iterator(self):
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return _mpr_sde.DoubleVector_iterator(self)
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def __iter__(self):
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return self.iterator()
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def __nonzero__(self):
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return _mpr_sde.DoubleVector___nonzero__(self)
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def __bool__(self):
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return _mpr_sde.DoubleVector___bool__(self)
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def __len__(self):
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return _mpr_sde.DoubleVector___len__(self)
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243
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+
|
244
|
+
def __getslice__(self, i, j):
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245
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+
return _mpr_sde.DoubleVector___getslice__(self, i, j)
|
246
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+
|
247
|
+
def __setslice__(self, *args):
|
248
|
+
return _mpr_sde.DoubleVector___setslice__(self, *args)
|
249
|
+
|
250
|
+
def __delslice__(self, i, j):
|
251
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+
return _mpr_sde.DoubleVector___delslice__(self, i, j)
|
252
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+
|
253
|
+
def __delitem__(self, *args):
|
254
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+
return _mpr_sde.DoubleVector___delitem__(self, *args)
|
255
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+
|
256
|
+
def __getitem__(self, *args):
|
257
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+
return _mpr_sde.DoubleVector___getitem__(self, *args)
|
258
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+
|
259
|
+
def __setitem__(self, *args):
|
260
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+
return _mpr_sde.DoubleVector___setitem__(self, *args)
|
261
|
+
|
262
|
+
def pop(self):
|
263
|
+
return _mpr_sde.DoubleVector_pop(self)
|
264
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+
|
265
|
+
def append(self, x):
|
266
|
+
return _mpr_sde.DoubleVector_append(self, x)
|
267
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+
|
268
|
+
def empty(self):
|
269
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+
return _mpr_sde.DoubleVector_empty(self)
|
270
|
+
|
271
|
+
def size(self):
|
272
|
+
return _mpr_sde.DoubleVector_size(self)
|
273
|
+
|
274
|
+
def swap(self, v):
|
275
|
+
return _mpr_sde.DoubleVector_swap(self, v)
|
276
|
+
|
277
|
+
def begin(self):
|
278
|
+
return _mpr_sde.DoubleVector_begin(self)
|
279
|
+
|
280
|
+
def end(self):
|
281
|
+
return _mpr_sde.DoubleVector_end(self)
|
282
|
+
|
283
|
+
def rbegin(self):
|
284
|
+
return _mpr_sde.DoubleVector_rbegin(self)
|
285
|
+
|
286
|
+
def rend(self):
|
287
|
+
return _mpr_sde.DoubleVector_rend(self)
|
288
|
+
|
289
|
+
def clear(self):
|
290
|
+
return _mpr_sde.DoubleVector_clear(self)
|
291
|
+
|
292
|
+
def get_allocator(self):
|
293
|
+
return _mpr_sde.DoubleVector_get_allocator(self)
|
294
|
+
|
295
|
+
def pop_back(self):
|
296
|
+
return _mpr_sde.DoubleVector_pop_back(self)
|
297
|
+
|
298
|
+
def erase(self, *args):
|
299
|
+
return _mpr_sde.DoubleVector_erase(self, *args)
|
300
|
+
|
301
|
+
def __init__(self, *args):
|
302
|
+
_mpr_sde.DoubleVector_swiginit(self, _mpr_sde.new_DoubleVector(*args))
|
303
|
+
|
304
|
+
def push_back(self, x):
|
305
|
+
return _mpr_sde.DoubleVector_push_back(self, x)
|
306
|
+
|
307
|
+
def front(self):
|
308
|
+
return _mpr_sde.DoubleVector_front(self)
|
309
|
+
|
310
|
+
def back(self):
|
311
|
+
return _mpr_sde.DoubleVector_back(self)
|
312
|
+
|
313
|
+
def assign(self, n, x):
|
314
|
+
return _mpr_sde.DoubleVector_assign(self, n, x)
|
315
|
+
|
316
|
+
def resize(self, *args):
|
317
|
+
return _mpr_sde.DoubleVector_resize(self, *args)
|
318
|
+
|
319
|
+
def insert(self, *args):
|
320
|
+
return _mpr_sde.DoubleVector_insert(self, *args)
|
321
|
+
|
322
|
+
def reserve(self, n):
|
323
|
+
return _mpr_sde.DoubleVector_reserve(self, n)
|
324
|
+
|
325
|
+
def capacity(self):
|
326
|
+
return _mpr_sde.DoubleVector_capacity(self)
|
327
|
+
__swig_destroy__ = _mpr_sde.delete_DoubleVector
|
328
|
+
|
329
|
+
# Register DoubleVector in _mpr_sde:
|
330
|
+
_mpr_sde.DoubleVector_swigregister(DoubleVector)
|
331
|
+
class DoubleVector2(object):
|
332
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
333
|
+
__repr__ = _swig_repr
|
334
|
+
|
335
|
+
def iterator(self):
|
336
|
+
return _mpr_sde.DoubleVector2_iterator(self)
|
337
|
+
def __iter__(self):
|
338
|
+
return self.iterator()
|
339
|
+
|
340
|
+
def __nonzero__(self):
|
341
|
+
return _mpr_sde.DoubleVector2___nonzero__(self)
|
342
|
+
|
343
|
+
def __bool__(self):
|
344
|
+
return _mpr_sde.DoubleVector2___bool__(self)
|
345
|
+
|
346
|
+
def __len__(self):
|
347
|
+
return _mpr_sde.DoubleVector2___len__(self)
|
348
|
+
|
349
|
+
def __getslice__(self, i, j):
|
350
|
+
return _mpr_sde.DoubleVector2___getslice__(self, i, j)
|
351
|
+
|
352
|
+
def __setslice__(self, *args):
|
353
|
+
return _mpr_sde.DoubleVector2___setslice__(self, *args)
|
354
|
+
|
355
|
+
def __delslice__(self, i, j):
|
356
|
+
return _mpr_sde.DoubleVector2___delslice__(self, i, j)
|
357
|
+
|
358
|
+
def __delitem__(self, *args):
|
359
|
+
return _mpr_sde.DoubleVector2___delitem__(self, *args)
|
360
|
+
|
361
|
+
def __getitem__(self, *args):
|
362
|
+
return _mpr_sde.DoubleVector2___getitem__(self, *args)
|
363
|
+
|
364
|
+
def __setitem__(self, *args):
|
365
|
+
return _mpr_sde.DoubleVector2___setitem__(self, *args)
|
366
|
+
|
367
|
+
def pop(self):
|
368
|
+
return _mpr_sde.DoubleVector2_pop(self)
|
369
|
+
|
370
|
+
def append(self, x):
|
371
|
+
return _mpr_sde.DoubleVector2_append(self, x)
|
372
|
+
|
373
|
+
def empty(self):
|
374
|
+
return _mpr_sde.DoubleVector2_empty(self)
|
375
|
+
|
376
|
+
def size(self):
|
377
|
+
return _mpr_sde.DoubleVector2_size(self)
|
378
|
+
|
379
|
+
def swap(self, v):
|
380
|
+
return _mpr_sde.DoubleVector2_swap(self, v)
|
381
|
+
|
382
|
+
def begin(self):
|
383
|
+
return _mpr_sde.DoubleVector2_begin(self)
|
384
|
+
|
385
|
+
def end(self):
|
386
|
+
return _mpr_sde.DoubleVector2_end(self)
|
387
|
+
|
388
|
+
def rbegin(self):
|
389
|
+
return _mpr_sde.DoubleVector2_rbegin(self)
|
390
|
+
|
391
|
+
def rend(self):
|
392
|
+
return _mpr_sde.DoubleVector2_rend(self)
|
393
|
+
|
394
|
+
def clear(self):
|
395
|
+
return _mpr_sde.DoubleVector2_clear(self)
|
396
|
+
|
397
|
+
def get_allocator(self):
|
398
|
+
return _mpr_sde.DoubleVector2_get_allocator(self)
|
399
|
+
|
400
|
+
def pop_back(self):
|
401
|
+
return _mpr_sde.DoubleVector2_pop_back(self)
|
402
|
+
|
403
|
+
def erase(self, *args):
|
404
|
+
return _mpr_sde.DoubleVector2_erase(self, *args)
|
405
|
+
|
406
|
+
def __init__(self, *args):
|
407
|
+
_mpr_sde.DoubleVector2_swiginit(self, _mpr_sde.new_DoubleVector2(*args))
|
408
|
+
|
409
|
+
def push_back(self, x):
|
410
|
+
return _mpr_sde.DoubleVector2_push_back(self, x)
|
411
|
+
|
412
|
+
def front(self):
|
413
|
+
return _mpr_sde.DoubleVector2_front(self)
|
414
|
+
|
415
|
+
def back(self):
|
416
|
+
return _mpr_sde.DoubleVector2_back(self)
|
417
|
+
|
418
|
+
def assign(self, n, x):
|
419
|
+
return _mpr_sde.DoubleVector2_assign(self, n, x)
|
420
|
+
|
421
|
+
def resize(self, *args):
|
422
|
+
return _mpr_sde.DoubleVector2_resize(self, *args)
|
423
|
+
|
424
|
+
def insert(self, *args):
|
425
|
+
return _mpr_sde.DoubleVector2_insert(self, *args)
|
426
|
+
|
427
|
+
def reserve(self, n):
|
428
|
+
return _mpr_sde.DoubleVector2_reserve(self, n)
|
429
|
+
|
430
|
+
def capacity(self):
|
431
|
+
return _mpr_sde.DoubleVector2_capacity(self)
|
432
|
+
__swig_destroy__ = _mpr_sde.delete_DoubleVector2
|
433
|
+
|
434
|
+
# Register DoubleVector2 in _mpr_sde:
|
435
|
+
_mpr_sde.DoubleVector2_swigregister(DoubleVector2)
|
436
|
+
class SingleVector(object):
|
437
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
438
|
+
__repr__ = _swig_repr
|
439
|
+
|
440
|
+
def iterator(self):
|
441
|
+
return _mpr_sde.SingleVector_iterator(self)
|
442
|
+
def __iter__(self):
|
443
|
+
return self.iterator()
|
444
|
+
|
445
|
+
def __nonzero__(self):
|
446
|
+
return _mpr_sde.SingleVector___nonzero__(self)
|
447
|
+
|
448
|
+
def __bool__(self):
|
449
|
+
return _mpr_sde.SingleVector___bool__(self)
|
450
|
+
|
451
|
+
def __len__(self):
|
452
|
+
return _mpr_sde.SingleVector___len__(self)
|
453
|
+
|
454
|
+
def __getslice__(self, i, j):
|
455
|
+
return _mpr_sde.SingleVector___getslice__(self, i, j)
|
456
|
+
|
457
|
+
def __setslice__(self, *args):
|
458
|
+
return _mpr_sde.SingleVector___setslice__(self, *args)
|
459
|
+
|
460
|
+
def __delslice__(self, i, j):
|
461
|
+
return _mpr_sde.SingleVector___delslice__(self, i, j)
|
462
|
+
|
463
|
+
def __delitem__(self, *args):
|
464
|
+
return _mpr_sde.SingleVector___delitem__(self, *args)
|
465
|
+
|
466
|
+
def __getitem__(self, *args):
|
467
|
+
return _mpr_sde.SingleVector___getitem__(self, *args)
|
468
|
+
|
469
|
+
def __setitem__(self, *args):
|
470
|
+
return _mpr_sde.SingleVector___setitem__(self, *args)
|
471
|
+
|
472
|
+
def pop(self):
|
473
|
+
return _mpr_sde.SingleVector_pop(self)
|
474
|
+
|
475
|
+
def append(self, x):
|
476
|
+
return _mpr_sde.SingleVector_append(self, x)
|
477
|
+
|
478
|
+
def empty(self):
|
479
|
+
return _mpr_sde.SingleVector_empty(self)
|
480
|
+
|
481
|
+
def size(self):
|
482
|
+
return _mpr_sde.SingleVector_size(self)
|
483
|
+
|
484
|
+
def swap(self, v):
|
485
|
+
return _mpr_sde.SingleVector_swap(self, v)
|
486
|
+
|
487
|
+
def begin(self):
|
488
|
+
return _mpr_sde.SingleVector_begin(self)
|
489
|
+
|
490
|
+
def end(self):
|
491
|
+
return _mpr_sde.SingleVector_end(self)
|
492
|
+
|
493
|
+
def rbegin(self):
|
494
|
+
return _mpr_sde.SingleVector_rbegin(self)
|
495
|
+
|
496
|
+
def rend(self):
|
497
|
+
return _mpr_sde.SingleVector_rend(self)
|
498
|
+
|
499
|
+
def clear(self):
|
500
|
+
return _mpr_sde.SingleVector_clear(self)
|
501
|
+
|
502
|
+
def get_allocator(self):
|
503
|
+
return _mpr_sde.SingleVector_get_allocator(self)
|
504
|
+
|
505
|
+
def pop_back(self):
|
506
|
+
return _mpr_sde.SingleVector_pop_back(self)
|
507
|
+
|
508
|
+
def erase(self, *args):
|
509
|
+
return _mpr_sde.SingleVector_erase(self, *args)
|
510
|
+
|
511
|
+
def __init__(self, *args):
|
512
|
+
_mpr_sde.SingleVector_swiginit(self, _mpr_sde.new_SingleVector(*args))
|
513
|
+
|
514
|
+
def push_back(self, x):
|
515
|
+
return _mpr_sde.SingleVector_push_back(self, x)
|
516
|
+
|
517
|
+
def front(self):
|
518
|
+
return _mpr_sde.SingleVector_front(self)
|
519
|
+
|
520
|
+
def back(self):
|
521
|
+
return _mpr_sde.SingleVector_back(self)
|
522
|
+
|
523
|
+
def assign(self, n, x):
|
524
|
+
return _mpr_sde.SingleVector_assign(self, n, x)
|
525
|
+
|
526
|
+
def resize(self, *args):
|
527
|
+
return _mpr_sde.SingleVector_resize(self, *args)
|
528
|
+
|
529
|
+
def insert(self, *args):
|
530
|
+
return _mpr_sde.SingleVector_insert(self, *args)
|
531
|
+
|
532
|
+
def reserve(self, n):
|
533
|
+
return _mpr_sde.SingleVector_reserve(self, n)
|
534
|
+
|
535
|
+
def capacity(self):
|
536
|
+
return _mpr_sde.SingleVector_capacity(self)
|
537
|
+
__swig_destroy__ = _mpr_sde.delete_SingleVector
|
538
|
+
|
539
|
+
# Register SingleVector in _mpr_sde:
|
540
|
+
_mpr_sde.SingleVector_swigregister(SingleVector)
|
541
|
+
class SingleVector2(object):
|
542
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
543
|
+
__repr__ = _swig_repr
|
544
|
+
|
545
|
+
def iterator(self):
|
546
|
+
return _mpr_sde.SingleVector2_iterator(self)
|
547
|
+
def __iter__(self):
|
548
|
+
return self.iterator()
|
549
|
+
|
550
|
+
def __nonzero__(self):
|
551
|
+
return _mpr_sde.SingleVector2___nonzero__(self)
|
552
|
+
|
553
|
+
def __bool__(self):
|
554
|
+
return _mpr_sde.SingleVector2___bool__(self)
|
555
|
+
|
556
|
+
def __len__(self):
|
557
|
+
return _mpr_sde.SingleVector2___len__(self)
|
558
|
+
|
559
|
+
def __getslice__(self, i, j):
|
560
|
+
return _mpr_sde.SingleVector2___getslice__(self, i, j)
|
561
|
+
|
562
|
+
def __setslice__(self, *args):
|
563
|
+
return _mpr_sde.SingleVector2___setslice__(self, *args)
|
564
|
+
|
565
|
+
def __delslice__(self, i, j):
|
566
|
+
return _mpr_sde.SingleVector2___delslice__(self, i, j)
|
567
|
+
|
568
|
+
def __delitem__(self, *args):
|
569
|
+
return _mpr_sde.SingleVector2___delitem__(self, *args)
|
570
|
+
|
571
|
+
def __getitem__(self, *args):
|
572
|
+
return _mpr_sde.SingleVector2___getitem__(self, *args)
|
573
|
+
|
574
|
+
def __setitem__(self, *args):
|
575
|
+
return _mpr_sde.SingleVector2___setitem__(self, *args)
|
576
|
+
|
577
|
+
def pop(self):
|
578
|
+
return _mpr_sde.SingleVector2_pop(self)
|
579
|
+
|
580
|
+
def append(self, x):
|
581
|
+
return _mpr_sde.SingleVector2_append(self, x)
|
582
|
+
|
583
|
+
def empty(self):
|
584
|
+
return _mpr_sde.SingleVector2_empty(self)
|
585
|
+
|
586
|
+
def size(self):
|
587
|
+
return _mpr_sde.SingleVector2_size(self)
|
588
|
+
|
589
|
+
def swap(self, v):
|
590
|
+
return _mpr_sde.SingleVector2_swap(self, v)
|
591
|
+
|
592
|
+
def begin(self):
|
593
|
+
return _mpr_sde.SingleVector2_begin(self)
|
594
|
+
|
595
|
+
def end(self):
|
596
|
+
return _mpr_sde.SingleVector2_end(self)
|
597
|
+
|
598
|
+
def rbegin(self):
|
599
|
+
return _mpr_sde.SingleVector2_rbegin(self)
|
600
|
+
|
601
|
+
def rend(self):
|
602
|
+
return _mpr_sde.SingleVector2_rend(self)
|
603
|
+
|
604
|
+
def clear(self):
|
605
|
+
return _mpr_sde.SingleVector2_clear(self)
|
606
|
+
|
607
|
+
def get_allocator(self):
|
608
|
+
return _mpr_sde.SingleVector2_get_allocator(self)
|
609
|
+
|
610
|
+
def pop_back(self):
|
611
|
+
return _mpr_sde.SingleVector2_pop_back(self)
|
612
|
+
|
613
|
+
def erase(self, *args):
|
614
|
+
return _mpr_sde.SingleVector2_erase(self, *args)
|
615
|
+
|
616
|
+
def __init__(self, *args):
|
617
|
+
_mpr_sde.SingleVector2_swiginit(self, _mpr_sde.new_SingleVector2(*args))
|
618
|
+
|
619
|
+
def push_back(self, x):
|
620
|
+
return _mpr_sde.SingleVector2_push_back(self, x)
|
621
|
+
|
622
|
+
def front(self):
|
623
|
+
return _mpr_sde.SingleVector2_front(self)
|
624
|
+
|
625
|
+
def back(self):
|
626
|
+
return _mpr_sde.SingleVector2_back(self)
|
627
|
+
|
628
|
+
def assign(self, n, x):
|
629
|
+
return _mpr_sde.SingleVector2_assign(self, n, x)
|
630
|
+
|
631
|
+
def resize(self, *args):
|
632
|
+
return _mpr_sde.SingleVector2_resize(self, *args)
|
633
|
+
|
634
|
+
def insert(self, *args):
|
635
|
+
return _mpr_sde.SingleVector2_insert(self, *args)
|
636
|
+
|
637
|
+
def reserve(self, n):
|
638
|
+
return _mpr_sde.SingleVector2_reserve(self, n)
|
639
|
+
|
640
|
+
def capacity(self):
|
641
|
+
return _mpr_sde.SingleVector2_capacity(self)
|
642
|
+
__swig_destroy__ = _mpr_sde.delete_SingleVector2
|
643
|
+
|
644
|
+
# Register SingleVector2 in _mpr_sde:
|
645
|
+
_mpr_sde.SingleVector2_swigregister(SingleVector2)
|
646
|
+
class BoldParams(object):
|
647
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
648
|
+
__repr__ = _swig_repr
|
649
|
+
kappa = property(_mpr_sde.BoldParams_kappa_get, _mpr_sde.BoldParams_kappa_set)
|
650
|
+
gamma = property(_mpr_sde.BoldParams_gamma_get, _mpr_sde.BoldParams_gamma_set)
|
651
|
+
tau = property(_mpr_sde.BoldParams_tau_get, _mpr_sde.BoldParams_tau_set)
|
652
|
+
alpha = property(_mpr_sde.BoldParams_alpha_get, _mpr_sde.BoldParams_alpha_set)
|
653
|
+
epsilon = property(_mpr_sde.BoldParams_epsilon_get, _mpr_sde.BoldParams_epsilon_set)
|
654
|
+
Eo = property(_mpr_sde.BoldParams_Eo_get, _mpr_sde.BoldParams_Eo_set)
|
655
|
+
TE = property(_mpr_sde.BoldParams_TE_get, _mpr_sde.BoldParams_TE_set)
|
656
|
+
vo = property(_mpr_sde.BoldParams_vo_get, _mpr_sde.BoldParams_vo_set)
|
657
|
+
r0 = property(_mpr_sde.BoldParams_r0_get, _mpr_sde.BoldParams_r0_set)
|
658
|
+
theta0 = property(_mpr_sde.BoldParams_theta0_get, _mpr_sde.BoldParams_theta0_set)
|
659
|
+
rtol = property(_mpr_sde.BoldParams_rtol_get, _mpr_sde.BoldParams_rtol_set)
|
660
|
+
atol = property(_mpr_sde.BoldParams_atol_get, _mpr_sde.BoldParams_atol_set)
|
661
|
+
dt_b = property(_mpr_sde.BoldParams_dt_b_get, _mpr_sde.BoldParams_dt_b_set)
|
662
|
+
K1 = property(_mpr_sde.BoldParams_K1_get, _mpr_sde.BoldParams_K1_set)
|
663
|
+
K2 = property(_mpr_sde.BoldParams_K2_get, _mpr_sde.BoldParams_K2_set)
|
664
|
+
K3 = property(_mpr_sde.BoldParams_K3_get, _mpr_sde.BoldParams_K3_set)
|
665
|
+
ialpha = property(_mpr_sde.BoldParams_ialpha_get, _mpr_sde.BoldParams_ialpha_set)
|
666
|
+
|
667
|
+
def __init__(self, *args):
|
668
|
+
_mpr_sde.BoldParams_swiginit(self, _mpr_sde.new_BoldParams(*args))
|
669
|
+
__swig_destroy__ = _mpr_sde.delete_BoldParams
|
670
|
+
|
671
|
+
# Register BoldParams in _mpr_sde:
|
672
|
+
_mpr_sde.BoldParams_swigregister(BoldParams)
|
673
|
+
class MPR_sde(object):
|
674
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
675
|
+
__repr__ = _swig_repr
|
676
|
+
bold_d = property(_mpr_sde.MPR_sde_bold_d_get, _mpr_sde.MPR_sde_bold_d_set)
|
677
|
+
bold_t = property(_mpr_sde.MPR_sde_bold_t_get, _mpr_sde.MPR_sde_bold_t_set)
|
678
|
+
r_d = property(_mpr_sde.MPR_sde_r_d_get, _mpr_sde.MPR_sde_r_d_set)
|
679
|
+
r_t = property(_mpr_sde.MPR_sde_r_t_get, _mpr_sde.MPR_sde_r_t_set)
|
680
|
+
|
681
|
+
def __init__(self, dt, dt_b, rv_decimate, weights, initial_state, delta, tau, eta, J, i_app, noise_amp, G, t_end, t_cut, tr, RECORD_RV, RECORD_BOLD, fix_seed, bp):
|
682
|
+
_mpr_sde.MPR_sde_swiginit(self, _mpr_sde.new_MPR_sde(dt, dt_b, rv_decimate, weights, initial_state, delta, tau, eta, J, i_app, noise_amp, G, t_end, t_cut, tr, RECORD_RV, RECORD_BOLD, fix_seed, bp))
|
683
|
+
|
684
|
+
def f_mpr(self, x, dxdt, t):
|
685
|
+
return _mpr_sde.MPR_sde_f_mpr(self, x, dxdt, t)
|
686
|
+
|
687
|
+
def heun_step(self, y, t):
|
688
|
+
return _mpr_sde.MPR_sde_heun_step(self, y, t)
|
689
|
+
|
690
|
+
def bold_step(self, r_in, s, f, ftilde, vtilde, qtilde, v, q, dtt):
|
691
|
+
return _mpr_sde.MPR_sde_bold_step(self, r_in, s, f, ftilde, vtilde, qtilde, v, q, dtt)
|
692
|
+
|
693
|
+
def integrate(self):
|
694
|
+
return _mpr_sde.MPR_sde_integrate(self)
|
695
|
+
|
696
|
+
def get_bold_d(self):
|
697
|
+
return _mpr_sde.MPR_sde_get_bold_d(self)
|
698
|
+
|
699
|
+
def get_bold_t(self):
|
700
|
+
return _mpr_sde.MPR_sde_get_bold_t(self)
|
701
|
+
|
702
|
+
def get_r_d(self):
|
703
|
+
return _mpr_sde.MPR_sde_get_r_d(self)
|
704
|
+
|
705
|
+
def get_r_t(self):
|
706
|
+
return _mpr_sde.MPR_sde_get_r_t(self)
|
707
|
+
__swig_destroy__ = _mpr_sde.delete_MPR_sde
|
708
|
+
|
709
|
+
# Register MPR_sde in _mpr_sde:
|
710
|
+
_mpr_sde.MPR_sde_swigregister(MPR_sde)
|
711
|
+
|