vbi 0.1.3__cp310-cp310-manylinux2014_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- vbi/__init__.py +37 -0
- vbi/_version.py +17 -0
- vbi/dataset/__init__.py +0 -0
- vbi/dataset/connectivity_84/centers.txt +84 -0
- vbi/dataset/connectivity_84/centres.txt +84 -0
- vbi/dataset/connectivity_84/cortical.txt +84 -0
- vbi/dataset/connectivity_84/tract_lengths.txt +84 -0
- vbi/dataset/connectivity_84/weights.txt +84 -0
- vbi/dataset/connectivity_88/Aud_88.txt +88 -0
- vbi/dataset/connectivity_88/Bold.npz +0 -0
- vbi/dataset/connectivity_88/Labels.txt +17 -0
- vbi/dataset/connectivity_88/Region_labels.txt +88 -0
- vbi/dataset/connectivity_88/tract_lengths.txt +88 -0
- vbi/dataset/connectivity_88/weights.txt +88 -0
- vbi/feature_extraction/__init__.py +1 -0
- vbi/feature_extraction/calc_features.py +293 -0
- vbi/feature_extraction/features.json +535 -0
- vbi/feature_extraction/features.py +2124 -0
- vbi/feature_extraction/features_settings.py +374 -0
- vbi/feature_extraction/features_utils.py +1357 -0
- vbi/feature_extraction/infodynamics.jar +0 -0
- vbi/feature_extraction/utility.py +507 -0
- vbi/inference.py +98 -0
- vbi/models/__init__.py +0 -0
- vbi/models/cpp/__init__.py +0 -0
- vbi/models/cpp/_src/__init__.py +0 -0
- vbi/models/cpp/_src/__pycache__/mpr_sde.cpython-310.pyc +0 -0
- vbi/models/cpp/_src/_do.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_jr_sdde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_jr_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_km_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_mpr_sde.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_vep.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/_wc_ode.cpython-310-x86_64-linux-gnu.so +0 -0
- vbi/models/cpp/_src/bold.hpp +303 -0
- vbi/models/cpp/_src/do.hpp +167 -0
- vbi/models/cpp/_src/do.i +17 -0
- vbi/models/cpp/_src/do.py +467 -0
- vbi/models/cpp/_src/do_wrap.cxx +12811 -0
- vbi/models/cpp/_src/jr_sdde.hpp +352 -0
- vbi/models/cpp/_src/jr_sdde.i +19 -0
- vbi/models/cpp/_src/jr_sdde.py +688 -0
- vbi/models/cpp/_src/jr_sdde_wrap.cxx +18718 -0
- vbi/models/cpp/_src/jr_sde.hpp +264 -0
- vbi/models/cpp/_src/jr_sde.i +17 -0
- vbi/models/cpp/_src/jr_sde.py +470 -0
- vbi/models/cpp/_src/jr_sde_wrap.cxx +13406 -0
- vbi/models/cpp/_src/km_sde.hpp +158 -0
- vbi/models/cpp/_src/km_sde.i +19 -0
- vbi/models/cpp/_src/km_sde.py +671 -0
- vbi/models/cpp/_src/km_sde_wrap.cxx +17367 -0
- vbi/models/cpp/_src/makefile +52 -0
- vbi/models/cpp/_src/mpr_sde.hpp +327 -0
- vbi/models/cpp/_src/mpr_sde.i +19 -0
- vbi/models/cpp/_src/mpr_sde.py +711 -0
- vbi/models/cpp/_src/mpr_sde_wrap.cxx +18618 -0
- vbi/models/cpp/_src/utility.hpp +307 -0
- vbi/models/cpp/_src/vep.hpp +171 -0
- vbi/models/cpp/_src/vep.i +16 -0
- vbi/models/cpp/_src/vep.py +464 -0
- vbi/models/cpp/_src/vep_wrap.cxx +12968 -0
- vbi/models/cpp/_src/wc_ode.hpp +294 -0
- vbi/models/cpp/_src/wc_ode.i +19 -0
- vbi/models/cpp/_src/wc_ode.py +686 -0
- vbi/models/cpp/_src/wc_ode_wrap.cxx +24263 -0
- vbi/models/cpp/damp_oscillator.py +143 -0
- vbi/models/cpp/jansen_rit.py +543 -0
- vbi/models/cpp/km.py +187 -0
- vbi/models/cpp/mpr.py +289 -0
- vbi/models/cpp/vep.py +150 -0
- vbi/models/cpp/wc.py +216 -0
- vbi/models/cupy/__init__.py +0 -0
- vbi/models/cupy/bold.py +111 -0
- vbi/models/cupy/ghb.py +284 -0
- vbi/models/cupy/jansen_rit.py +473 -0
- vbi/models/cupy/km.py +224 -0
- vbi/models/cupy/mpr.py +475 -0
- vbi/models/cupy/mpr_modified_bold.py +12 -0
- vbi/models/cupy/utils.py +184 -0
- vbi/models/numba/__init__.py +0 -0
- vbi/models/numba/_ww_EI.py +444 -0
- vbi/models/numba/damp_oscillator.py +162 -0
- vbi/models/numba/ghb.py +208 -0
- vbi/models/numba/mpr.py +383 -0
- vbi/models/pytorch/__init__.py +0 -0
- vbi/models/pytorch/data/default_parameters.npz +0 -0
- vbi/models/pytorch/data/input/ROI_sim.mat +0 -0
- vbi/models/pytorch/data/input/fc_test.csv +68 -0
- vbi/models/pytorch/data/input/fc_train.csv +68 -0
- vbi/models/pytorch/data/input/fc_vali.csv +68 -0
- vbi/models/pytorch/data/input/fcd_test.mat +0 -0
- vbi/models/pytorch/data/input/fcd_test_high_window.mat +0 -0
- vbi/models/pytorch/data/input/fcd_test_low_window.mat +0 -0
- vbi/models/pytorch/data/input/fcd_train.mat +0 -0
- vbi/models/pytorch/data/input/fcd_vali.mat +0 -0
- vbi/models/pytorch/data/input/myelin.csv +68 -0
- vbi/models/pytorch/data/input/rsfc_gradient.csv +68 -0
- vbi/models/pytorch/data/input/run_label_testset.mat +0 -0
- vbi/models/pytorch/data/input/sc_test.csv +68 -0
- vbi/models/pytorch/data/input/sc_train.csv +68 -0
- vbi/models/pytorch/data/input/sc_vali.csv +68 -0
- vbi/models/pytorch/data/obs_kong0.npz +0 -0
- vbi/models/pytorch/ww_sde_kong.py +570 -0
- vbi/models/tvbk/__init__.py +9 -0
- vbi/models/tvbk/tvbk_wrapper.py +166 -0
- vbi/models/tvbk/utils.py +72 -0
- vbi/papers/__init__.py +0 -0
- vbi/papers/pavlides_pcb_2015/pavlides.py +211 -0
- vbi/tests/__init__.py +0 -0
- vbi/tests/_test_mpr_nb.py +36 -0
- vbi/tests/test_features.py +355 -0
- vbi/tests/test_ghb_cupy.py +90 -0
- vbi/tests/test_mpr_cupy.py +49 -0
- vbi/tests/test_mpr_numba.py +84 -0
- vbi/tests/test_suite.py +19 -0
- vbi/utils.py +402 -0
- vbi-0.1.3.dist-info/METADATA +166 -0
- vbi-0.1.3.dist-info/RECORD +121 -0
- vbi-0.1.3.dist-info/WHEEL +5 -0
- vbi-0.1.3.dist-info/licenses/LICENSE +201 -0
- vbi-0.1.3.dist-info/top_level.txt +1 -0
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# This file was automatically generated by SWIG (https://www.swig.org).
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# Version 4.3.1
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from sys import version_info as _swig_python_version_info
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set(self, name, value)
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def _swig_add_metaclass(metaclass):
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class _SwigNonDynamicMeta(type):
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"""Meta class to enforce nondynamic attributes (no new attributes) for a class"""
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__setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
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class SwigPyIterator(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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def copy(self):
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return _jr_sdde.SwigPyIterator___eq__(self, x)
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def __iadd__(self, n):
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def __iter__(self):
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# Register SwigPyIterator in _jr_sdde:
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_jr_sdde.SwigPyIterator_swigregister(SwigPyIterator)
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class IntVector(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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__repr__ = _swig_repr
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def iterator(self):
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def __iter__(self):
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def __nonzero__(self):
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def __bool__(self):
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def __len__(self):
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return _jr_sdde.IntVector___len__(self)
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def __getslice__(self, i, j):
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return _jr_sdde.IntVector___getslice__(self, i, j)
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def __setslice__(self, *args):
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return _jr_sdde.IntVector___setslice__(self, *args)
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def __delslice__(self, i, j):
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return _jr_sdde.IntVector___delslice__(self, i, j)
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def __delitem__(self, *args):
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return _jr_sdde.IntVector___delitem__(self, *args)
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def __getitem__(self, *args):
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return _jr_sdde.IntVector___getitem__(self, *args)
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def __setitem__(self, *args):
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return _jr_sdde.IntVector___setitem__(self, *args)
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def pop(self):
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return _jr_sdde.IntVector_pop(self)
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def append(self, x):
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return _jr_sdde.IntVector_append(self, x)
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def empty(self):
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return _jr_sdde.IntVector_empty(self)
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def size(self):
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return _jr_sdde.IntVector_size(self)
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def swap(self, v):
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return _jr_sdde.IntVector_swap(self, v)
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def begin(self):
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return _jr_sdde.IntVector_begin(self)
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def end(self):
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def rbegin(self):
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return _jr_sdde.IntVector_rbegin(self)
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def rend(self):
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return _jr_sdde.IntVector_rend(self)
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def clear(self):
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return _jr_sdde.IntVector_clear(self)
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def get_allocator(self):
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return _jr_sdde.IntVector_get_allocator(self)
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def pop_back(self):
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return _jr_sdde.IntVector_pop_back(self)
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def erase(self, *args):
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return _jr_sdde.IntVector_erase(self, *args)
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def __init__(self, *args):
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_jr_sdde.IntVector_swiginit(self, _jr_sdde.new_IntVector(*args))
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def push_back(self, x):
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def front(self):
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def back(self):
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def assign(self, n, x):
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def resize(self, *args):
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def insert(self, *args):
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def reserve(self, n):
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def capacity(self):
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__swig_destroy__ = _jr_sdde.delete_IntVector
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# Register IntVector in _jr_sdde:
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_jr_sdde.IntVector_swigregister(IntVector)
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class DoubleVector(object):
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thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
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__repr__ = _swig_repr
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def iterator(self):
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def __iter__(self):
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return self.iterator()
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def __nonzero__(self):
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return _jr_sdde.DoubleVector___nonzero__(self)
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def __bool__(self):
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return _jr_sdde.DoubleVector___bool__(self)
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def __len__(self):
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return _jr_sdde.DoubleVector___len__(self)
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243
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+
|
244
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+
def __getslice__(self, i, j):
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+
return _jr_sdde.DoubleVector___getslice__(self, i, j)
|
246
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+
|
247
|
+
def __setslice__(self, *args):
|
248
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+
return _jr_sdde.DoubleVector___setslice__(self, *args)
|
249
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+
|
250
|
+
def __delslice__(self, i, j):
|
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+
return _jr_sdde.DoubleVector___delslice__(self, i, j)
|
252
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+
|
253
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+
def __delitem__(self, *args):
|
254
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+
return _jr_sdde.DoubleVector___delitem__(self, *args)
|
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+
|
256
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+
def __getitem__(self, *args):
|
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+
return _jr_sdde.DoubleVector___getitem__(self, *args)
|
258
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+
|
259
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+
def __setitem__(self, *args):
|
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+
return _jr_sdde.DoubleVector___setitem__(self, *args)
|
261
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+
|
262
|
+
def pop(self):
|
263
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+
return _jr_sdde.DoubleVector_pop(self)
|
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+
|
265
|
+
def append(self, x):
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266
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+
return _jr_sdde.DoubleVector_append(self, x)
|
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+
|
268
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+
def empty(self):
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+
return _jr_sdde.DoubleVector_empty(self)
|
270
|
+
|
271
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+
def size(self):
|
272
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+
return _jr_sdde.DoubleVector_size(self)
|
273
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+
|
274
|
+
def swap(self, v):
|
275
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+
return _jr_sdde.DoubleVector_swap(self, v)
|
276
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+
|
277
|
+
def begin(self):
|
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+
return _jr_sdde.DoubleVector_begin(self)
|
279
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+
|
280
|
+
def end(self):
|
281
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+
return _jr_sdde.DoubleVector_end(self)
|
282
|
+
|
283
|
+
def rbegin(self):
|
284
|
+
return _jr_sdde.DoubleVector_rbegin(self)
|
285
|
+
|
286
|
+
def rend(self):
|
287
|
+
return _jr_sdde.DoubleVector_rend(self)
|
288
|
+
|
289
|
+
def clear(self):
|
290
|
+
return _jr_sdde.DoubleVector_clear(self)
|
291
|
+
|
292
|
+
def get_allocator(self):
|
293
|
+
return _jr_sdde.DoubleVector_get_allocator(self)
|
294
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+
|
295
|
+
def pop_back(self):
|
296
|
+
return _jr_sdde.DoubleVector_pop_back(self)
|
297
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+
|
298
|
+
def erase(self, *args):
|
299
|
+
return _jr_sdde.DoubleVector_erase(self, *args)
|
300
|
+
|
301
|
+
def __init__(self, *args):
|
302
|
+
_jr_sdde.DoubleVector_swiginit(self, _jr_sdde.new_DoubleVector(*args))
|
303
|
+
|
304
|
+
def push_back(self, x):
|
305
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+
return _jr_sdde.DoubleVector_push_back(self, x)
|
306
|
+
|
307
|
+
def front(self):
|
308
|
+
return _jr_sdde.DoubleVector_front(self)
|
309
|
+
|
310
|
+
def back(self):
|
311
|
+
return _jr_sdde.DoubleVector_back(self)
|
312
|
+
|
313
|
+
def assign(self, n, x):
|
314
|
+
return _jr_sdde.DoubleVector_assign(self, n, x)
|
315
|
+
|
316
|
+
def resize(self, *args):
|
317
|
+
return _jr_sdde.DoubleVector_resize(self, *args)
|
318
|
+
|
319
|
+
def insert(self, *args):
|
320
|
+
return _jr_sdde.DoubleVector_insert(self, *args)
|
321
|
+
|
322
|
+
def reserve(self, n):
|
323
|
+
return _jr_sdde.DoubleVector_reserve(self, n)
|
324
|
+
|
325
|
+
def capacity(self):
|
326
|
+
return _jr_sdde.DoubleVector_capacity(self)
|
327
|
+
__swig_destroy__ = _jr_sdde.delete_DoubleVector
|
328
|
+
|
329
|
+
# Register DoubleVector in _jr_sdde:
|
330
|
+
_jr_sdde.DoubleVector_swigregister(DoubleVector)
|
331
|
+
class DoubleVector2(object):
|
332
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
333
|
+
__repr__ = _swig_repr
|
334
|
+
|
335
|
+
def iterator(self):
|
336
|
+
return _jr_sdde.DoubleVector2_iterator(self)
|
337
|
+
def __iter__(self):
|
338
|
+
return self.iterator()
|
339
|
+
|
340
|
+
def __nonzero__(self):
|
341
|
+
return _jr_sdde.DoubleVector2___nonzero__(self)
|
342
|
+
|
343
|
+
def __bool__(self):
|
344
|
+
return _jr_sdde.DoubleVector2___bool__(self)
|
345
|
+
|
346
|
+
def __len__(self):
|
347
|
+
return _jr_sdde.DoubleVector2___len__(self)
|
348
|
+
|
349
|
+
def __getslice__(self, i, j):
|
350
|
+
return _jr_sdde.DoubleVector2___getslice__(self, i, j)
|
351
|
+
|
352
|
+
def __setslice__(self, *args):
|
353
|
+
return _jr_sdde.DoubleVector2___setslice__(self, *args)
|
354
|
+
|
355
|
+
def __delslice__(self, i, j):
|
356
|
+
return _jr_sdde.DoubleVector2___delslice__(self, i, j)
|
357
|
+
|
358
|
+
def __delitem__(self, *args):
|
359
|
+
return _jr_sdde.DoubleVector2___delitem__(self, *args)
|
360
|
+
|
361
|
+
def __getitem__(self, *args):
|
362
|
+
return _jr_sdde.DoubleVector2___getitem__(self, *args)
|
363
|
+
|
364
|
+
def __setitem__(self, *args):
|
365
|
+
return _jr_sdde.DoubleVector2___setitem__(self, *args)
|
366
|
+
|
367
|
+
def pop(self):
|
368
|
+
return _jr_sdde.DoubleVector2_pop(self)
|
369
|
+
|
370
|
+
def append(self, x):
|
371
|
+
return _jr_sdde.DoubleVector2_append(self, x)
|
372
|
+
|
373
|
+
def empty(self):
|
374
|
+
return _jr_sdde.DoubleVector2_empty(self)
|
375
|
+
|
376
|
+
def size(self):
|
377
|
+
return _jr_sdde.DoubleVector2_size(self)
|
378
|
+
|
379
|
+
def swap(self, v):
|
380
|
+
return _jr_sdde.DoubleVector2_swap(self, v)
|
381
|
+
|
382
|
+
def begin(self):
|
383
|
+
return _jr_sdde.DoubleVector2_begin(self)
|
384
|
+
|
385
|
+
def end(self):
|
386
|
+
return _jr_sdde.DoubleVector2_end(self)
|
387
|
+
|
388
|
+
def rbegin(self):
|
389
|
+
return _jr_sdde.DoubleVector2_rbegin(self)
|
390
|
+
|
391
|
+
def rend(self):
|
392
|
+
return _jr_sdde.DoubleVector2_rend(self)
|
393
|
+
|
394
|
+
def clear(self):
|
395
|
+
return _jr_sdde.DoubleVector2_clear(self)
|
396
|
+
|
397
|
+
def get_allocator(self):
|
398
|
+
return _jr_sdde.DoubleVector2_get_allocator(self)
|
399
|
+
|
400
|
+
def pop_back(self):
|
401
|
+
return _jr_sdde.DoubleVector2_pop_back(self)
|
402
|
+
|
403
|
+
def erase(self, *args):
|
404
|
+
return _jr_sdde.DoubleVector2_erase(self, *args)
|
405
|
+
|
406
|
+
def __init__(self, *args):
|
407
|
+
_jr_sdde.DoubleVector2_swiginit(self, _jr_sdde.new_DoubleVector2(*args))
|
408
|
+
|
409
|
+
def push_back(self, x):
|
410
|
+
return _jr_sdde.DoubleVector2_push_back(self, x)
|
411
|
+
|
412
|
+
def front(self):
|
413
|
+
return _jr_sdde.DoubleVector2_front(self)
|
414
|
+
|
415
|
+
def back(self):
|
416
|
+
return _jr_sdde.DoubleVector2_back(self)
|
417
|
+
|
418
|
+
def assign(self, n, x):
|
419
|
+
return _jr_sdde.DoubleVector2_assign(self, n, x)
|
420
|
+
|
421
|
+
def resize(self, *args):
|
422
|
+
return _jr_sdde.DoubleVector2_resize(self, *args)
|
423
|
+
|
424
|
+
def insert(self, *args):
|
425
|
+
return _jr_sdde.DoubleVector2_insert(self, *args)
|
426
|
+
|
427
|
+
def reserve(self, n):
|
428
|
+
return _jr_sdde.DoubleVector2_reserve(self, n)
|
429
|
+
|
430
|
+
def capacity(self):
|
431
|
+
return _jr_sdde.DoubleVector2_capacity(self)
|
432
|
+
__swig_destroy__ = _jr_sdde.delete_DoubleVector2
|
433
|
+
|
434
|
+
# Register DoubleVector2 in _jr_sdde:
|
435
|
+
_jr_sdde.DoubleVector2_swigregister(DoubleVector2)
|
436
|
+
class SingleVector(object):
|
437
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
438
|
+
__repr__ = _swig_repr
|
439
|
+
|
440
|
+
def iterator(self):
|
441
|
+
return _jr_sdde.SingleVector_iterator(self)
|
442
|
+
def __iter__(self):
|
443
|
+
return self.iterator()
|
444
|
+
|
445
|
+
def __nonzero__(self):
|
446
|
+
return _jr_sdde.SingleVector___nonzero__(self)
|
447
|
+
|
448
|
+
def __bool__(self):
|
449
|
+
return _jr_sdde.SingleVector___bool__(self)
|
450
|
+
|
451
|
+
def __len__(self):
|
452
|
+
return _jr_sdde.SingleVector___len__(self)
|
453
|
+
|
454
|
+
def __getslice__(self, i, j):
|
455
|
+
return _jr_sdde.SingleVector___getslice__(self, i, j)
|
456
|
+
|
457
|
+
def __setslice__(self, *args):
|
458
|
+
return _jr_sdde.SingleVector___setslice__(self, *args)
|
459
|
+
|
460
|
+
def __delslice__(self, i, j):
|
461
|
+
return _jr_sdde.SingleVector___delslice__(self, i, j)
|
462
|
+
|
463
|
+
def __delitem__(self, *args):
|
464
|
+
return _jr_sdde.SingleVector___delitem__(self, *args)
|
465
|
+
|
466
|
+
def __getitem__(self, *args):
|
467
|
+
return _jr_sdde.SingleVector___getitem__(self, *args)
|
468
|
+
|
469
|
+
def __setitem__(self, *args):
|
470
|
+
return _jr_sdde.SingleVector___setitem__(self, *args)
|
471
|
+
|
472
|
+
def pop(self):
|
473
|
+
return _jr_sdde.SingleVector_pop(self)
|
474
|
+
|
475
|
+
def append(self, x):
|
476
|
+
return _jr_sdde.SingleVector_append(self, x)
|
477
|
+
|
478
|
+
def empty(self):
|
479
|
+
return _jr_sdde.SingleVector_empty(self)
|
480
|
+
|
481
|
+
def size(self):
|
482
|
+
return _jr_sdde.SingleVector_size(self)
|
483
|
+
|
484
|
+
def swap(self, v):
|
485
|
+
return _jr_sdde.SingleVector_swap(self, v)
|
486
|
+
|
487
|
+
def begin(self):
|
488
|
+
return _jr_sdde.SingleVector_begin(self)
|
489
|
+
|
490
|
+
def end(self):
|
491
|
+
return _jr_sdde.SingleVector_end(self)
|
492
|
+
|
493
|
+
def rbegin(self):
|
494
|
+
return _jr_sdde.SingleVector_rbegin(self)
|
495
|
+
|
496
|
+
def rend(self):
|
497
|
+
return _jr_sdde.SingleVector_rend(self)
|
498
|
+
|
499
|
+
def clear(self):
|
500
|
+
return _jr_sdde.SingleVector_clear(self)
|
501
|
+
|
502
|
+
def get_allocator(self):
|
503
|
+
return _jr_sdde.SingleVector_get_allocator(self)
|
504
|
+
|
505
|
+
def pop_back(self):
|
506
|
+
return _jr_sdde.SingleVector_pop_back(self)
|
507
|
+
|
508
|
+
def erase(self, *args):
|
509
|
+
return _jr_sdde.SingleVector_erase(self, *args)
|
510
|
+
|
511
|
+
def __init__(self, *args):
|
512
|
+
_jr_sdde.SingleVector_swiginit(self, _jr_sdde.new_SingleVector(*args))
|
513
|
+
|
514
|
+
def push_back(self, x):
|
515
|
+
return _jr_sdde.SingleVector_push_back(self, x)
|
516
|
+
|
517
|
+
def front(self):
|
518
|
+
return _jr_sdde.SingleVector_front(self)
|
519
|
+
|
520
|
+
def back(self):
|
521
|
+
return _jr_sdde.SingleVector_back(self)
|
522
|
+
|
523
|
+
def assign(self, n, x):
|
524
|
+
return _jr_sdde.SingleVector_assign(self, n, x)
|
525
|
+
|
526
|
+
def resize(self, *args):
|
527
|
+
return _jr_sdde.SingleVector_resize(self, *args)
|
528
|
+
|
529
|
+
def insert(self, *args):
|
530
|
+
return _jr_sdde.SingleVector_insert(self, *args)
|
531
|
+
|
532
|
+
def reserve(self, n):
|
533
|
+
return _jr_sdde.SingleVector_reserve(self, n)
|
534
|
+
|
535
|
+
def capacity(self):
|
536
|
+
return _jr_sdde.SingleVector_capacity(self)
|
537
|
+
__swig_destroy__ = _jr_sdde.delete_SingleVector
|
538
|
+
|
539
|
+
# Register SingleVector in _jr_sdde:
|
540
|
+
_jr_sdde.SingleVector_swigregister(SingleVector)
|
541
|
+
class SingleVector2(object):
|
542
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
543
|
+
__repr__ = _swig_repr
|
544
|
+
|
545
|
+
def iterator(self):
|
546
|
+
return _jr_sdde.SingleVector2_iterator(self)
|
547
|
+
def __iter__(self):
|
548
|
+
return self.iterator()
|
549
|
+
|
550
|
+
def __nonzero__(self):
|
551
|
+
return _jr_sdde.SingleVector2___nonzero__(self)
|
552
|
+
|
553
|
+
def __bool__(self):
|
554
|
+
return _jr_sdde.SingleVector2___bool__(self)
|
555
|
+
|
556
|
+
def __len__(self):
|
557
|
+
return _jr_sdde.SingleVector2___len__(self)
|
558
|
+
|
559
|
+
def __getslice__(self, i, j):
|
560
|
+
return _jr_sdde.SingleVector2___getslice__(self, i, j)
|
561
|
+
|
562
|
+
def __setslice__(self, *args):
|
563
|
+
return _jr_sdde.SingleVector2___setslice__(self, *args)
|
564
|
+
|
565
|
+
def __delslice__(self, i, j):
|
566
|
+
return _jr_sdde.SingleVector2___delslice__(self, i, j)
|
567
|
+
|
568
|
+
def __delitem__(self, *args):
|
569
|
+
return _jr_sdde.SingleVector2___delitem__(self, *args)
|
570
|
+
|
571
|
+
def __getitem__(self, *args):
|
572
|
+
return _jr_sdde.SingleVector2___getitem__(self, *args)
|
573
|
+
|
574
|
+
def __setitem__(self, *args):
|
575
|
+
return _jr_sdde.SingleVector2___setitem__(self, *args)
|
576
|
+
|
577
|
+
def pop(self):
|
578
|
+
return _jr_sdde.SingleVector2_pop(self)
|
579
|
+
|
580
|
+
def append(self, x):
|
581
|
+
return _jr_sdde.SingleVector2_append(self, x)
|
582
|
+
|
583
|
+
def empty(self):
|
584
|
+
return _jr_sdde.SingleVector2_empty(self)
|
585
|
+
|
586
|
+
def size(self):
|
587
|
+
return _jr_sdde.SingleVector2_size(self)
|
588
|
+
|
589
|
+
def swap(self, v):
|
590
|
+
return _jr_sdde.SingleVector2_swap(self, v)
|
591
|
+
|
592
|
+
def begin(self):
|
593
|
+
return _jr_sdde.SingleVector2_begin(self)
|
594
|
+
|
595
|
+
def end(self):
|
596
|
+
return _jr_sdde.SingleVector2_end(self)
|
597
|
+
|
598
|
+
def rbegin(self):
|
599
|
+
return _jr_sdde.SingleVector2_rbegin(self)
|
600
|
+
|
601
|
+
def rend(self):
|
602
|
+
return _jr_sdde.SingleVector2_rend(self)
|
603
|
+
|
604
|
+
def clear(self):
|
605
|
+
return _jr_sdde.SingleVector2_clear(self)
|
606
|
+
|
607
|
+
def get_allocator(self):
|
608
|
+
return _jr_sdde.SingleVector2_get_allocator(self)
|
609
|
+
|
610
|
+
def pop_back(self):
|
611
|
+
return _jr_sdde.SingleVector2_pop_back(self)
|
612
|
+
|
613
|
+
def erase(self, *args):
|
614
|
+
return _jr_sdde.SingleVector2_erase(self, *args)
|
615
|
+
|
616
|
+
def __init__(self, *args):
|
617
|
+
_jr_sdde.SingleVector2_swiginit(self, _jr_sdde.new_SingleVector2(*args))
|
618
|
+
|
619
|
+
def push_back(self, x):
|
620
|
+
return _jr_sdde.SingleVector2_push_back(self, x)
|
621
|
+
|
622
|
+
def front(self):
|
623
|
+
return _jr_sdde.SingleVector2_front(self)
|
624
|
+
|
625
|
+
def back(self):
|
626
|
+
return _jr_sdde.SingleVector2_back(self)
|
627
|
+
|
628
|
+
def assign(self, n, x):
|
629
|
+
return _jr_sdde.SingleVector2_assign(self, n, x)
|
630
|
+
|
631
|
+
def resize(self, *args):
|
632
|
+
return _jr_sdde.SingleVector2_resize(self, *args)
|
633
|
+
|
634
|
+
def insert(self, *args):
|
635
|
+
return _jr_sdde.SingleVector2_insert(self, *args)
|
636
|
+
|
637
|
+
def reserve(self, n):
|
638
|
+
return _jr_sdde.SingleVector2_reserve(self, n)
|
639
|
+
|
640
|
+
def capacity(self):
|
641
|
+
return _jr_sdde.SingleVector2_capacity(self)
|
642
|
+
__swig_destroy__ = _jr_sdde.delete_SingleVector2
|
643
|
+
|
644
|
+
# Register SingleVector2 in _jr_sdde:
|
645
|
+
_jr_sdde.SingleVector2_swigregister(SingleVector2)
|
646
|
+
class JR_sdde(object):
|
647
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
648
|
+
__repr__ = _swig_repr
|
649
|
+
nstart = property(_jr_sdde.JR_sdde_nstart_get, _jr_sdde.JR_sdde_nstart_set)
|
650
|
+
sti_vector = property(_jr_sdde.JR_sdde_sti_vector_get, _jr_sdde.JR_sdde_sti_vector_set)
|
651
|
+
|
652
|
+
def __init__(self, dt, y0, adj, delays, coupling, dimension, A, B, a, b, r, v0, vmax, C0, C1, C2, C3, sti_amp, sti_gain, sti_ti, sti_duration, noise_mu, noise_sigma, t_transition=1.0, t_final=10.0, noise_seed=0):
|
653
|
+
_jr_sdde.JR_sdde_swiginit(self, _jr_sdde.new_JR_sdde(dt, y0, adj, delays, coupling, dimension, A, B, a, b, r, v0, vmax, C0, C1, C2, C3, sti_amp, sti_gain, sti_ti, sti_duration, noise_mu, noise_sigma, t_transition, t_final, noise_seed))
|
654
|
+
|
655
|
+
def set_history(self, hist):
|
656
|
+
return _jr_sdde.JR_sdde_set_history(self, hist)
|
657
|
+
|
658
|
+
def prepare_sti(self, sti_amp, sti_gain, sti_ti, sti_duration):
|
659
|
+
return _jr_sdde.JR_sdde_prepare_sti(self, sti_amp, sti_gain, sti_ti, sti_duration)
|
660
|
+
|
661
|
+
def _sigma(self, v):
|
662
|
+
return _jr_sdde.JR_sdde__sigma(self, v)
|
663
|
+
|
664
|
+
def f_sys(self, t, n):
|
665
|
+
return _jr_sdde.JR_sdde_f_sys(self, t, n)
|
666
|
+
|
667
|
+
def euler(self, t, n):
|
668
|
+
return _jr_sdde.JR_sdde_euler(self, t, n)
|
669
|
+
|
670
|
+
def heun(self, t, n):
|
671
|
+
return _jr_sdde.JR_sdde_heun(self, t, n)
|
672
|
+
|
673
|
+
def integrate(self, method):
|
674
|
+
return _jr_sdde.JR_sdde_integrate(self, method)
|
675
|
+
|
676
|
+
def get_t(self):
|
677
|
+
return _jr_sdde.JR_sdde_get_t(self)
|
678
|
+
|
679
|
+
def get_y(self):
|
680
|
+
return _jr_sdde.JR_sdde_get_y(self)
|
681
|
+
|
682
|
+
def get_sti_vector(self):
|
683
|
+
return _jr_sdde.JR_sdde_get_sti_vector(self)
|
684
|
+
__swig_destroy__ = _jr_sdde.delete_JR_sdde
|
685
|
+
|
686
|
+
# Register JR_sdde in _jr_sdde:
|
687
|
+
_jr_sdde.JR_sdde_swigregister(JR_sdde)
|
688
|
+
|