tnfr 4.5.2__py3-none-any.whl → 7.0.0__py3-none-any.whl
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- tnfr/__init__.py +275 -51
- tnfr/__init__.pyi +33 -0
- tnfr/_compat.py +10 -0
- tnfr/_generated_version.py +34 -0
- tnfr/_version.py +49 -0
- tnfr/_version.pyi +7 -0
- tnfr/alias.py +117 -31
- tnfr/alias.pyi +108 -0
- tnfr/cache.py +6 -572
- tnfr/cache.pyi +16 -0
- tnfr/callback_utils.py +16 -38
- tnfr/callback_utils.pyi +79 -0
- tnfr/cli/__init__.py +34 -14
- tnfr/cli/__init__.pyi +26 -0
- tnfr/cli/arguments.py +211 -28
- tnfr/cli/arguments.pyi +27 -0
- tnfr/cli/execution.py +470 -50
- tnfr/cli/execution.pyi +70 -0
- tnfr/cli/utils.py +18 -3
- tnfr/cli/utils.pyi +8 -0
- tnfr/config/__init__.py +13 -0
- tnfr/config/__init__.pyi +10 -0
- tnfr/{constants_glyphs.py → config/constants.py} +26 -20
- tnfr/config/constants.pyi +12 -0
- tnfr/config/feature_flags.py +83 -0
- tnfr/{config.py → config/init.py} +11 -7
- tnfr/config/init.pyi +8 -0
- tnfr/config/operator_names.py +93 -0
- tnfr/config/operator_names.pyi +28 -0
- tnfr/config/presets.py +84 -0
- tnfr/config/presets.pyi +7 -0
- tnfr/constants/__init__.py +80 -29
- tnfr/constants/__init__.pyi +92 -0
- tnfr/constants/aliases.py +31 -0
- tnfr/constants/core.py +4 -4
- tnfr/constants/core.pyi +17 -0
- tnfr/constants/init.py +1 -1
- tnfr/constants/init.pyi +12 -0
- tnfr/constants/metric.py +7 -15
- tnfr/constants/metric.pyi +19 -0
- tnfr/dynamics/__init__.py +165 -633
- tnfr/dynamics/__init__.pyi +82 -0
- tnfr/dynamics/adaptation.py +267 -0
- tnfr/dynamics/aliases.py +23 -0
- tnfr/dynamics/coordination.py +385 -0
- tnfr/dynamics/dnfr.py +2283 -400
- tnfr/dynamics/dnfr.pyi +24 -0
- tnfr/dynamics/integrators.py +406 -98
- tnfr/dynamics/integrators.pyi +34 -0
- tnfr/dynamics/runtime.py +881 -0
- tnfr/dynamics/sampling.py +10 -5
- tnfr/dynamics/sampling.pyi +7 -0
- tnfr/dynamics/selectors.py +719 -0
- tnfr/execution.py +70 -48
- tnfr/execution.pyi +45 -0
- tnfr/flatten.py +13 -9
- tnfr/flatten.pyi +21 -0
- tnfr/gamma.py +66 -53
- tnfr/gamma.pyi +34 -0
- tnfr/glyph_history.py +110 -52
- tnfr/glyph_history.pyi +35 -0
- tnfr/glyph_runtime.py +16 -0
- tnfr/glyph_runtime.pyi +9 -0
- tnfr/immutable.py +69 -28
- tnfr/immutable.pyi +34 -0
- tnfr/initialization.py +16 -16
- tnfr/initialization.pyi +65 -0
- tnfr/io.py +6 -240
- tnfr/io.pyi +16 -0
- tnfr/locking.pyi +7 -0
- tnfr/mathematics/__init__.py +81 -0
- tnfr/mathematics/backend.py +426 -0
- tnfr/mathematics/dynamics.py +398 -0
- tnfr/mathematics/epi.py +254 -0
- tnfr/mathematics/generators.py +222 -0
- tnfr/mathematics/metrics.py +119 -0
- tnfr/mathematics/operators.py +233 -0
- tnfr/mathematics/operators_factory.py +71 -0
- tnfr/mathematics/projection.py +78 -0
- tnfr/mathematics/runtime.py +173 -0
- tnfr/mathematics/spaces.py +247 -0
- tnfr/mathematics/transforms.py +292 -0
- tnfr/metrics/__init__.py +10 -10
- tnfr/metrics/__init__.pyi +20 -0
- tnfr/metrics/coherence.py +993 -324
- tnfr/metrics/common.py +23 -16
- tnfr/metrics/common.pyi +46 -0
- tnfr/metrics/core.py +251 -35
- tnfr/metrics/core.pyi +13 -0
- tnfr/metrics/diagnosis.py +708 -111
- tnfr/metrics/diagnosis.pyi +85 -0
- tnfr/metrics/export.py +27 -15
- tnfr/metrics/glyph_timing.py +232 -42
- tnfr/metrics/reporting.py +33 -22
- tnfr/metrics/reporting.pyi +12 -0
- tnfr/metrics/sense_index.py +987 -43
- tnfr/metrics/sense_index.pyi +9 -0
- tnfr/metrics/trig.py +214 -23
- tnfr/metrics/trig.pyi +13 -0
- tnfr/metrics/trig_cache.py +115 -22
- tnfr/metrics/trig_cache.pyi +10 -0
- tnfr/node.py +542 -136
- tnfr/node.pyi +178 -0
- tnfr/observers.py +152 -35
- tnfr/observers.pyi +31 -0
- tnfr/ontosim.py +23 -19
- tnfr/ontosim.pyi +28 -0
- tnfr/operators/__init__.py +601 -82
- tnfr/operators/__init__.pyi +45 -0
- tnfr/operators/definitions.py +513 -0
- tnfr/operators/definitions.pyi +78 -0
- tnfr/operators/grammar.py +760 -0
- tnfr/operators/jitter.py +107 -38
- tnfr/operators/jitter.pyi +11 -0
- tnfr/operators/registry.py +75 -0
- tnfr/operators/registry.pyi +13 -0
- tnfr/operators/remesh.py +149 -88
- tnfr/py.typed +0 -0
- tnfr/rng.py +46 -143
- tnfr/rng.pyi +14 -0
- tnfr/schemas/__init__.py +8 -0
- tnfr/schemas/grammar.json +94 -0
- tnfr/selector.py +25 -19
- tnfr/selector.pyi +19 -0
- tnfr/sense.py +72 -62
- tnfr/sense.pyi +23 -0
- tnfr/structural.py +522 -262
- tnfr/structural.pyi +69 -0
- tnfr/telemetry/__init__.py +35 -0
- tnfr/telemetry/cache_metrics.py +226 -0
- tnfr/telemetry/nu_f.py +423 -0
- tnfr/telemetry/nu_f.pyi +123 -0
- tnfr/telemetry/verbosity.py +37 -0
- tnfr/tokens.py +1 -3
- tnfr/tokens.pyi +36 -0
- tnfr/trace.py +270 -113
- tnfr/trace.pyi +40 -0
- tnfr/types.py +574 -6
- tnfr/types.pyi +331 -0
- tnfr/units.py +69 -0
- tnfr/units.pyi +16 -0
- tnfr/utils/__init__.py +217 -0
- tnfr/utils/__init__.pyi +202 -0
- tnfr/utils/cache.py +2395 -0
- tnfr/utils/cache.pyi +468 -0
- tnfr/utils/chunks.py +104 -0
- tnfr/utils/chunks.pyi +21 -0
- tnfr/{collections_utils.py → utils/data.py} +147 -90
- tnfr/utils/data.pyi +64 -0
- tnfr/utils/graph.py +85 -0
- tnfr/utils/graph.pyi +10 -0
- tnfr/utils/init.py +770 -0
- tnfr/utils/init.pyi +78 -0
- tnfr/utils/io.py +456 -0
- tnfr/{helpers → utils}/numeric.py +51 -24
- tnfr/utils/numeric.pyi +21 -0
- tnfr/validation/__init__.py +113 -0
- tnfr/validation/__init__.pyi +77 -0
- tnfr/validation/compatibility.py +95 -0
- tnfr/validation/compatibility.pyi +6 -0
- tnfr/validation/grammar.py +71 -0
- tnfr/validation/grammar.pyi +40 -0
- tnfr/validation/graph.py +138 -0
- tnfr/validation/graph.pyi +17 -0
- tnfr/validation/rules.py +281 -0
- tnfr/validation/rules.pyi +55 -0
- tnfr/validation/runtime.py +263 -0
- tnfr/validation/runtime.pyi +31 -0
- tnfr/validation/soft_filters.py +170 -0
- tnfr/validation/soft_filters.pyi +37 -0
- tnfr/validation/spectral.py +159 -0
- tnfr/validation/spectral.pyi +46 -0
- tnfr/validation/syntax.py +40 -0
- tnfr/validation/syntax.pyi +10 -0
- tnfr/validation/window.py +39 -0
- tnfr/validation/window.pyi +1 -0
- tnfr/viz/__init__.py +9 -0
- tnfr/viz/matplotlib.py +246 -0
- tnfr-7.0.0.dist-info/METADATA +179 -0
- tnfr-7.0.0.dist-info/RECORD +185 -0
- {tnfr-4.5.2.dist-info → tnfr-7.0.0.dist-info}/licenses/LICENSE.md +1 -1
- tnfr/grammar.py +0 -344
- tnfr/graph_utils.py +0 -84
- tnfr/helpers/__init__.py +0 -71
- tnfr/import_utils.py +0 -228
- tnfr/json_utils.py +0 -162
- tnfr/logging_utils.py +0 -116
- tnfr/presets.py +0 -60
- tnfr/validators.py +0 -84
- tnfr/value_utils.py +0 -59
- tnfr-4.5.2.dist-info/METADATA +0 -379
- tnfr-4.5.2.dist-info/RECORD +0 -67
- {tnfr-4.5.2.dist-info → tnfr-7.0.0.dist-info}/WHEEL +0 -0
- {tnfr-4.5.2.dist-info → tnfr-7.0.0.dist-info}/entry_points.txt +0 -0
- {tnfr-4.5.2.dist-info → tnfr-7.0.0.dist-info}/top_level.txt +0 -0
tnfr/grammar.py
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"""Grammar rules."""
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from __future__ import annotations
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from dataclasses import dataclass
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from typing import Any, Iterable, Optional, Callable
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from .constants import DEFAULTS, get_aliases, get_param
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from .alias import get_attr
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from .helpers.numeric import clamp01
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from .glyph_history import recent_glyph
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from .types import Glyph
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from .operators import apply_glyph # avoid repeated import inside functions
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from .metrics.common import normalize_dnfr
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ALIAS_SI = get_aliases("SI")
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ALIAS_D2EPI = get_aliases("D2EPI")
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@dataclass
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class GrammarContext:
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"""Shared context for grammar helpers.
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Collects graph-level settings to reduce positional parameters across
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helper functions.
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"""
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G: Any
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cfg_soft: dict[str, Any]
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cfg_canon: dict[str, Any]
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norms: dict[str, Any]
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@classmethod
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def from_graph(cls, G: Any) -> "GrammarContext":
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"""Create a :class:`GrammarContext` for ``G``."""
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return cls(
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G=G,
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cfg_soft=G.graph.get("GRAMMAR", DEFAULTS.get("GRAMMAR", {})),
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cfg_canon=G.graph.get(
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"GRAMMAR_CANON", DEFAULTS.get("GRAMMAR_CANON", {})
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),
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norms=G.graph.get("_sel_norms") or {},
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)
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__all__ = (
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"CANON_COMPAT",
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"CANON_FALLBACK",
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"enforce_canonical_grammar",
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"on_applied_glyph",
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"apply_glyph_with_grammar",
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"GrammarContext",
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)
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# -------------------------
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# Per-node grammar state
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# -------------------------
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def _gram_state(nd: dict[str, Any]) -> dict[str, Any]:
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"""Create or return the node grammar state.
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Fields:
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- thol_open (bool)
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- thol_len (int)
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"""
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return nd.setdefault("_GRAM", {"thol_open": False, "thol_len": 0})
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# -------------------------
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# Canonical compatibilities (allowed next glyphs)
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# -------------------------
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CANON_COMPAT: dict[Glyph, set[Glyph]] = {
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# Inicio / apertura
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Glyph.AL: {Glyph.EN, Glyph.RA, Glyph.NAV, Glyph.VAL, Glyph.UM},
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Glyph.EN: {Glyph.IL, Glyph.UM, Glyph.RA, Glyph.NAV},
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# Estabilización / difusión / acople
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Glyph.IL: {Glyph.RA, Glyph.VAL, Glyph.UM, Glyph.SHA},
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Glyph.UM: {Glyph.RA, Glyph.IL, Glyph.VAL, Glyph.NAV},
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Glyph.RA: {Glyph.IL, Glyph.VAL, Glyph.UM, Glyph.NAV},
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Glyph.VAL: {Glyph.UM, Glyph.RA, Glyph.IL, Glyph.NAV},
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# Disonancia → transición → mutación
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Glyph.OZ: {Glyph.ZHIR, Glyph.NAV},
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Glyph.ZHIR: {Glyph.IL, Glyph.NAV},
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Glyph.NAV: {Glyph.OZ, Glyph.ZHIR, Glyph.RA, Glyph.IL, Glyph.UM},
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# Cierres / latencias
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Glyph.SHA: {Glyph.AL, Glyph.EN},
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Glyph.NUL: {Glyph.AL, Glyph.IL},
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# Bloques autoorganizativos
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Glyph.THOL: {
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Glyph.OZ,
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Glyph.ZHIR,
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Glyph.NAV,
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Glyph.RA,
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Glyph.IL,
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Glyph.UM,
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Glyph.SHA,
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Glyph.NUL,
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},
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}
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# Canonical fallbacks when a transition is not allowed
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CANON_FALLBACK: dict[Glyph, Glyph] = {
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Glyph.AL: Glyph.EN,
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Glyph.EN: Glyph.IL,
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Glyph.IL: Glyph.RA,
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Glyph.NAV: Glyph.RA,
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Glyph.NUL: Glyph.AL,
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Glyph.OZ: Glyph.ZHIR,
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Glyph.RA: Glyph.IL,
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Glyph.SHA: Glyph.AL,
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Glyph.THOL: Glyph.NAV,
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Glyph.UM: Glyph.RA,
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Glyph.VAL: Glyph.RA,
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Glyph.ZHIR: Glyph.IL,
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}
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def _coerce_glyph(val: Any) -> Glyph | Any:
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"""Return ``val`` as ``Glyph`` when possible."""
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try:
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return Glyph(val)
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except (ValueError, TypeError):
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return val
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def _glyph_fallback(cand_key: str, fallbacks: dict[str, Any]) -> Glyph | str:
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"""Determine fallback glyph for ``cand_key`` and return converted value."""
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glyph_key = _coerce_glyph(cand_key)
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canon_fb = (
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CANON_FALLBACK.get(glyph_key, cand_key)
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if isinstance(glyph_key, Glyph)
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else cand_key
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)
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fb = fallbacks.get(cand_key, canon_fb)
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return _coerce_glyph(fb)
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# -------------------------
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# THOL closures and ZHIR preconditions
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def get_norm(ctx: GrammarContext, key: str) -> float:
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"""Retrieve a global normalisation value from ``ctx.norms``."""
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return float(ctx.norms.get(key, 1.0)) or 1.0
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def _norm_attr(ctx: GrammarContext, nd, attr_alias: str, norm_key: str) -> float:
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max_val = get_norm(ctx, norm_key)
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return clamp01(abs(get_attr(nd, attr_alias, 0.0)) / max_val)
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def _si(nd) -> float:
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return clamp01(get_attr(nd, ALIAS_SI, 0.5))
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def _accel_norm(ctx: GrammarContext, nd) -> float:
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"""Normalise acceleration using the global maximum."""
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return _norm_attr(ctx, nd, ALIAS_D2EPI, "accel_max")
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def _check_repeats(ctx: GrammarContext, n, cand: Glyph | str) -> Glyph | str:
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"""Avoid recent repetitions according to ``ctx.cfg_soft``."""
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cand_key = cand.value if isinstance(cand, Glyph) else str(cand)
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if gwin > 0 and cand_key in avoid and recent_glyph(nd, cand_key, gwin):
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def _maybe_force(
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182
|
-
accessor: Callable[[GrammarContext, dict[str, Any]], float],
|
|
183
|
-
key: str,
|
|
184
|
-
) -> Glyph | str:
|
|
185
|
-
"""Restore ``original`` if ``accessor`` exceeds ``key`` threshold."""
|
|
186
|
-
if cand == original:
|
|
187
|
-
return cand
|
|
188
|
-
force_th = float(ctx.cfg_soft.get(key, 0.60))
|
|
189
|
-
if accessor(ctx, ctx.G.nodes[n]) >= force_th:
|
|
190
|
-
return original
|
|
191
|
-
return cand
|
|
192
|
-
|
|
193
|
-
|
|
194
|
-
def _check_oz_to_zhir(ctx: GrammarContext, n, cand: Glyph | str) -> Glyph | str:
|
|
195
|
-
nd = ctx.G.nodes[n]
|
|
196
|
-
cand_glyph = _coerce_glyph(cand)
|
|
197
|
-
if cand_glyph == Glyph.ZHIR:
|
|
198
|
-
cfg = ctx.cfg_canon
|
|
199
|
-
win = int(cfg.get("zhir_requires_oz_window", 3))
|
|
200
|
-
dn_min = float(cfg.get("zhir_dnfr_min", 0.05))
|
|
201
|
-
dnfr_max = get_norm(ctx, "dnfr_max")
|
|
202
|
-
if (
|
|
203
|
-
not recent_glyph(nd, Glyph.OZ, win)
|
|
204
|
-
and normalize_dnfr(nd, dnfr_max) < dn_min
|
|
205
|
-
):
|
|
206
|
-
return Glyph.OZ
|
|
207
|
-
return cand
|
|
208
|
-
|
|
209
|
-
|
|
210
|
-
def _check_thol_closure(
|
|
211
|
-
ctx: GrammarContext, n, cand: Glyph | str, st: dict[str, Any]
|
|
212
|
-
) -> Glyph | str:
|
|
213
|
-
nd = ctx.G.nodes[n]
|
|
214
|
-
if st.get("thol_open", False):
|
|
215
|
-
st["thol_len"] = int(st.get("thol_len", 0)) + 1
|
|
216
|
-
cfg = ctx.cfg_canon
|
|
217
|
-
minlen = int(cfg.get("thol_min_len", 2))
|
|
218
|
-
maxlen = int(cfg.get("thol_max_len", 6))
|
|
219
|
-
close_dn = float(cfg.get("thol_close_dnfr", 0.15))
|
|
220
|
-
dnfr_max = get_norm(ctx, "dnfr_max")
|
|
221
|
-
if st["thol_len"] >= maxlen or (
|
|
222
|
-
st["thol_len"] >= minlen
|
|
223
|
-
and normalize_dnfr(nd, dnfr_max) <= close_dn
|
|
224
|
-
):
|
|
225
|
-
return (
|
|
226
|
-
Glyph.NUL
|
|
227
|
-
if _si(nd) >= float(cfg.get("si_high", 0.66))
|
|
228
|
-
else Glyph.SHA
|
|
229
|
-
)
|
|
230
|
-
return cand
|
|
231
|
-
|
|
232
|
-
|
|
233
|
-
def _check_compatibility(ctx: GrammarContext, n, cand: Glyph | str) -> Glyph | str:
|
|
234
|
-
nd = ctx.G.nodes[n]
|
|
235
|
-
hist = nd.get("glyph_history")
|
|
236
|
-
prev = hist[-1] if hist else None
|
|
237
|
-
prev_glyph = _coerce_glyph(prev)
|
|
238
|
-
cand_glyph = _coerce_glyph(cand)
|
|
239
|
-
if isinstance(prev_glyph, Glyph):
|
|
240
|
-
allowed = CANON_COMPAT.get(prev_glyph)
|
|
241
|
-
if allowed is None:
|
|
242
|
-
return cand
|
|
243
|
-
if isinstance(cand_glyph, Glyph):
|
|
244
|
-
if cand_glyph not in allowed:
|
|
245
|
-
return CANON_FALLBACK.get(prev_glyph, cand_glyph)
|
|
246
|
-
else:
|
|
247
|
-
return CANON_FALLBACK.get(prev_glyph, cand)
|
|
248
|
-
return cand
|
|
249
|
-
|
|
250
|
-
|
|
251
|
-
# -------------------------
|
|
252
|
-
# Core: enforce grammar on a candidate
|
|
253
|
-
# -------------------------
|
|
254
|
-
|
|
255
|
-
|
|
256
|
-
def enforce_canonical_grammar(
|
|
257
|
-
G, n, cand: Glyph | str, ctx: Optional[GrammarContext] = None
|
|
258
|
-
) -> Glyph | str:
|
|
259
|
-
"""Validate and adjust a candidate glyph according to canonical grammar.
|
|
260
|
-
|
|
261
|
-
Key rules:
|
|
262
|
-
- Repeat window with forces based on |ΔNFR| and acceleration.
|
|
263
|
-
- Transition compatibilities (TNFR path).
|
|
264
|
-
- OZ→ZHIR: mutation requires recent dissonance or high |ΔNFR|.
|
|
265
|
-
- THOL[...]: forces closure with SHA or NUL when the field stabilises
|
|
266
|
-
or block length is reached; maintains per-node state.
|
|
267
|
-
|
|
268
|
-
Returns the effective glyph to apply.
|
|
269
|
-
"""
|
|
270
|
-
if ctx is None:
|
|
271
|
-
ctx = GrammarContext.from_graph(G)
|
|
272
|
-
|
|
273
|
-
nd = ctx.G.nodes[n]
|
|
274
|
-
st = _gram_state(nd)
|
|
275
|
-
|
|
276
|
-
raw_cand = cand
|
|
277
|
-
cand = _coerce_glyph(cand)
|
|
278
|
-
input_was_str = isinstance(raw_cand, str)
|
|
279
|
-
|
|
280
|
-
# 0) If glyphs outside the alphabet arrive, leave untouched
|
|
281
|
-
if not isinstance(cand, Glyph) or cand not in CANON_COMPAT:
|
|
282
|
-
return raw_cand if input_was_str else cand
|
|
283
|
-
|
|
284
|
-
original = cand
|
|
285
|
-
cand = _check_repeats(ctx, n, cand)
|
|
286
|
-
|
|
287
|
-
dnfr_accessor = lambda ctx, nd: normalize_dnfr(nd, get_norm(ctx, "dnfr_max"))
|
|
288
|
-
cand = _maybe_force(ctx, n, cand, original, dnfr_accessor, "force_dnfr")
|
|
289
|
-
cand = _maybe_force(ctx, n, cand, original, _accel_norm, "force_accel")
|
|
290
|
-
cand = _check_oz_to_zhir(ctx, n, cand)
|
|
291
|
-
cand = _check_thol_closure(ctx, n, cand, st)
|
|
292
|
-
cand = _check_compatibility(ctx, n, cand)
|
|
293
|
-
|
|
294
|
-
coerced_final = _coerce_glyph(cand)
|
|
295
|
-
if input_was_str:
|
|
296
|
-
if isinstance(coerced_final, Glyph):
|
|
297
|
-
return coerced_final.value
|
|
298
|
-
return str(cand)
|
|
299
|
-
return coerced_final if isinstance(coerced_final, Glyph) else cand
|
|
300
|
-
|
|
301
|
-
|
|
302
|
-
# -------------------------
|
|
303
|
-
# Post-selection: update grammar state
|
|
304
|
-
# -------------------------
|
|
305
|
-
|
|
306
|
-
|
|
307
|
-
def on_applied_glyph(G, n, applied: str) -> None:
|
|
308
|
-
nd = G.nodes[n]
|
|
309
|
-
st = _gram_state(nd)
|
|
310
|
-
if applied == Glyph.THOL:
|
|
311
|
-
st["thol_open"] = True
|
|
312
|
-
st["thol_len"] = 0
|
|
313
|
-
elif applied in (Glyph.SHA, Glyph.NUL):
|
|
314
|
-
st["thol_open"] = False
|
|
315
|
-
st["thol_len"] = 0
|
|
316
|
-
|
|
317
|
-
|
|
318
|
-
# -------------------------
|
|
319
|
-
# Direct application with canonical grammar
|
|
320
|
-
# -------------------------
|
|
321
|
-
|
|
322
|
-
|
|
323
|
-
def apply_glyph_with_grammar(
|
|
324
|
-
G,
|
|
325
|
-
nodes: Optional[Iterable[Any]],
|
|
326
|
-
glyph: Glyph | str,
|
|
327
|
-
window: Optional[int] = None,
|
|
328
|
-
) -> None:
|
|
329
|
-
"""Apply ``glyph`` to ``nodes`` enforcing the canonical grammar.
|
|
330
|
-
|
|
331
|
-
``nodes`` may be a ``NodeView`` or any iterable. The iterable is consumed
|
|
332
|
-
directly to avoid unnecessary materialisation; callers must materialise if
|
|
333
|
-
they need indexing.
|
|
334
|
-
"""
|
|
335
|
-
if window is None:
|
|
336
|
-
window = get_param(G, "GLYPH_HYSTERESIS_WINDOW")
|
|
337
|
-
|
|
338
|
-
g_str = glyph.value if isinstance(glyph, Glyph) else str(glyph)
|
|
339
|
-
iter_nodes = G.nodes() if nodes is None else nodes
|
|
340
|
-
ctx = GrammarContext.from_graph(G)
|
|
341
|
-
for n in iter_nodes:
|
|
342
|
-
g_eff = enforce_canonical_grammar(G, n, g_str, ctx)
|
|
343
|
-
apply_glyph(G, n, g_eff, window=window)
|
|
344
|
-
on_applied_glyph(G, n, g_eff)
|
tnfr/graph_utils.py
DELETED
|
@@ -1,84 +0,0 @@
|
|
|
1
|
-
"""Utilities for graph-level bookkeeping.
|
|
2
|
-
|
|
3
|
-
This module centralises helpers that operate on the metadata stored inside
|
|
4
|
-
graph objects. Besides flagging ΔNFR preparation caches it also exposes
|
|
5
|
-
lightweight adapters to obtain the canonical ``graph`` mapping and to read
|
|
6
|
-
validated configuration dictionaries.
|
|
7
|
-
"""
|
|
8
|
-
|
|
9
|
-
from __future__ import annotations
|
|
10
|
-
|
|
11
|
-
import warnings
|
|
12
|
-
from types import MappingProxyType
|
|
13
|
-
from typing import Any, Mapping
|
|
14
|
-
|
|
15
|
-
__all__ = (
|
|
16
|
-
"get_graph",
|
|
17
|
-
"get_graph_mapping",
|
|
18
|
-
"mark_dnfr_prep_dirty",
|
|
19
|
-
"supports_add_edge",
|
|
20
|
-
)
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
def get_graph(obj: Any) -> Any:
|
|
24
|
-
"""Return ``obj.graph`` when present or ``obj`` otherwise."""
|
|
25
|
-
return getattr(obj, "graph", obj)
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
def get_graph_mapping(
|
|
29
|
-
G: Any, key: str, warn_msg: str
|
|
30
|
-
) -> Mapping[str, Any] | None:
|
|
31
|
-
"""Return an immutable view of ``G``'s stored mapping for ``key``.
|
|
32
|
-
|
|
33
|
-
The helper normalises access to ``G.graph[key]`` by returning
|
|
34
|
-
``None`` when the key is missing or holds a non-mapping value. When a
|
|
35
|
-
mapping is found it is wrapped in :class:`types.MappingProxyType` to guard
|
|
36
|
-
against accidental mutation. ``warn_msg`` is emitted via
|
|
37
|
-
:func:`warnings.warn` when the stored value is not a mapping.
|
|
38
|
-
"""
|
|
39
|
-
graph = get_graph(G)
|
|
40
|
-
getter = getattr(graph, "get", None)
|
|
41
|
-
if getter is None:
|
|
42
|
-
return None
|
|
43
|
-
|
|
44
|
-
data = getter(key)
|
|
45
|
-
if data is None:
|
|
46
|
-
return None
|
|
47
|
-
if not isinstance(data, Mapping):
|
|
48
|
-
warnings.warn(warn_msg, UserWarning, stacklevel=2)
|
|
49
|
-
return None
|
|
50
|
-
return MappingProxyType(data)
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
def mark_dnfr_prep_dirty(G: Any) -> None:
|
|
54
|
-
"""Flag ΔNFR preparation data as stale.
|
|
55
|
-
|
|
56
|
-
Parameters
|
|
57
|
-
----------
|
|
58
|
-
G : Any
|
|
59
|
-
Graph-like object whose ``graph`` attribute will receive the
|
|
60
|
-
``"_dnfr_prep_dirty"`` flag.
|
|
61
|
-
|
|
62
|
-
Returns
|
|
63
|
-
-------
|
|
64
|
-
None
|
|
65
|
-
This function mutates ``G`` in place.
|
|
66
|
-
"""
|
|
67
|
-
graph = get_graph(G)
|
|
68
|
-
graph["_dnfr_prep_dirty"] = True
|
|
69
|
-
|
|
70
|
-
|
|
71
|
-
def supports_add_edge(graph: Any) -> bool:
|
|
72
|
-
"""Return ``True`` if ``graph`` exposes an ``add_edge`` method.
|
|
73
|
-
|
|
74
|
-
Parameters
|
|
75
|
-
----------
|
|
76
|
-
graph : Any
|
|
77
|
-
Object representing a graph.
|
|
78
|
-
|
|
79
|
-
Returns
|
|
80
|
-
-------
|
|
81
|
-
bool
|
|
82
|
-
``True`` when ``graph`` implements ``add_edge``; ``False`` otherwise.
|
|
83
|
-
"""
|
|
84
|
-
return hasattr(graph, "add_edge")
|
tnfr/helpers/__init__.py
DELETED
|
@@ -1,71 +0,0 @@
|
|
|
1
|
-
"""Curated high-level helpers exposed by :mod:`tnfr.helpers`.
|
|
2
|
-
|
|
3
|
-
The module is intentionally small and surfaces utilities that are stable for
|
|
4
|
-
external use, covering data preparation, glyph history management, and graph
|
|
5
|
-
cache invalidation.
|
|
6
|
-
"""
|
|
7
|
-
|
|
8
|
-
from __future__ import annotations
|
|
9
|
-
|
|
10
|
-
from ..cache import (
|
|
11
|
-
EdgeCacheManager,
|
|
12
|
-
cached_node_list,
|
|
13
|
-
cached_nodes_and_A,
|
|
14
|
-
edge_version_cache,
|
|
15
|
-
edge_version_update,
|
|
16
|
-
ensure_node_index_map,
|
|
17
|
-
ensure_node_offset_map,
|
|
18
|
-
increment_edge_version,
|
|
19
|
-
node_set_checksum,
|
|
20
|
-
stable_json,
|
|
21
|
-
)
|
|
22
|
-
from ..graph_utils import get_graph, get_graph_mapping, mark_dnfr_prep_dirty
|
|
23
|
-
from .numeric import (
|
|
24
|
-
angle_diff,
|
|
25
|
-
clamp,
|
|
26
|
-
clamp01,
|
|
27
|
-
kahan_sum_nd,
|
|
28
|
-
)
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
def __getattr__(name: str):
|
|
32
|
-
if name in _GLYPH_HISTORY_EXPORTS:
|
|
33
|
-
from .. import glyph_history as _glyph_history
|
|
34
|
-
|
|
35
|
-
value = getattr(_glyph_history, name)
|
|
36
|
-
globals()[name] = value
|
|
37
|
-
return value
|
|
38
|
-
raise AttributeError(f"module {__name__!r} has no attribute {name!r}")
|
|
39
|
-
|
|
40
|
-
__all__ = (
|
|
41
|
-
"EdgeCacheManager",
|
|
42
|
-
"angle_diff",
|
|
43
|
-
"cached_node_list",
|
|
44
|
-
"cached_nodes_and_A",
|
|
45
|
-
"clamp",
|
|
46
|
-
"clamp01",
|
|
47
|
-
"edge_version_cache",
|
|
48
|
-
"edge_version_update",
|
|
49
|
-
"ensure_node_index_map",
|
|
50
|
-
"ensure_node_offset_map",
|
|
51
|
-
"get_graph",
|
|
52
|
-
"get_graph_mapping",
|
|
53
|
-
"increment_edge_version",
|
|
54
|
-
"kahan_sum_nd",
|
|
55
|
-
"mark_dnfr_prep_dirty",
|
|
56
|
-
"node_set_checksum",
|
|
57
|
-
"stable_json",
|
|
58
|
-
"count_glyphs",
|
|
59
|
-
"ensure_history",
|
|
60
|
-
"last_glyph",
|
|
61
|
-
"push_glyph",
|
|
62
|
-
"recent_glyph",
|
|
63
|
-
)
|
|
64
|
-
|
|
65
|
-
_GLYPH_HISTORY_EXPORTS = (
|
|
66
|
-
"count_glyphs",
|
|
67
|
-
"ensure_history",
|
|
68
|
-
"last_glyph",
|
|
69
|
-
"push_glyph",
|
|
70
|
-
"recent_glyph",
|
|
71
|
-
)
|