snowpark-connect 0.20.2__py3-none-any.whl
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- snowflake/snowpark_connect/__init__.py +23 -0
- snowflake/snowpark_connect/analyze_plan/__init__.py +3 -0
- snowflake/snowpark_connect/analyze_plan/map_tree_string.py +38 -0
- snowflake/snowpark_connect/column_name_handler.py +735 -0
- snowflake/snowpark_connect/config.py +576 -0
- snowflake/snowpark_connect/constants.py +47 -0
- snowflake/snowpark_connect/control_server.py +52 -0
- snowflake/snowpark_connect/dataframe_name_handler.py +54 -0
- snowflake/snowpark_connect/date_time_format_mapping.py +399 -0
- snowflake/snowpark_connect/empty_dataframe.py +18 -0
- snowflake/snowpark_connect/error/__init__.py +11 -0
- snowflake/snowpark_connect/error/error_mapping.py +6174 -0
- snowflake/snowpark_connect/error/error_utils.py +321 -0
- snowflake/snowpark_connect/error/exceptions.py +24 -0
- snowflake/snowpark_connect/execute_plan/__init__.py +3 -0
- snowflake/snowpark_connect/execute_plan/map_execution_command.py +204 -0
- snowflake/snowpark_connect/execute_plan/map_execution_root.py +173 -0
- snowflake/snowpark_connect/execute_plan/utils.py +183 -0
- snowflake/snowpark_connect/expression/__init__.py +3 -0
- snowflake/snowpark_connect/expression/literal.py +90 -0
- snowflake/snowpark_connect/expression/map_cast.py +343 -0
- snowflake/snowpark_connect/expression/map_expression.py +293 -0
- snowflake/snowpark_connect/expression/map_extension.py +104 -0
- snowflake/snowpark_connect/expression/map_sql_expression.py +633 -0
- snowflake/snowpark_connect/expression/map_udf.py +142 -0
- snowflake/snowpark_connect/expression/map_unresolved_attribute.py +241 -0
- snowflake/snowpark_connect/expression/map_unresolved_extract_value.py +85 -0
- snowflake/snowpark_connect/expression/map_unresolved_function.py +9450 -0
- snowflake/snowpark_connect/expression/map_unresolved_star.py +218 -0
- snowflake/snowpark_connect/expression/map_update_fields.py +164 -0
- snowflake/snowpark_connect/expression/map_window_function.py +258 -0
- snowflake/snowpark_connect/expression/typer.py +125 -0
- snowflake/snowpark_connect/includes/__init__.py +0 -0
- snowflake/snowpark_connect/includes/jars/antlr4-runtime-4.9.3.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-cli-1.5.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-codec-1.16.1.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-collections-3.2.2.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-collections4-4.4.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-compiler-3.1.9.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-compress-1.26.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-crypto-1.1.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-dbcp-1.4.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-io-2.16.1.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-lang-2.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-lang3-3.12.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-logging-1.1.3.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-math3-3.6.1.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-pool-1.5.4.jar +0 -0
- snowflake/snowpark_connect/includes/jars/commons-text-1.10.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/hadoop-client-api-3.3.4.jar +0 -0
- snowflake/snowpark_connect/includes/jars/jackson-annotations-2.15.2.jar +0 -0
- snowflake/snowpark_connect/includes/jars/jackson-core-2.15.2.jar +0 -0
- snowflake/snowpark_connect/includes/jars/jackson-core-asl-1.9.13.jar +0 -0
- snowflake/snowpark_connect/includes/jars/jackson-databind-2.15.2.jar +0 -0
- snowflake/snowpark_connect/includes/jars/jackson-dataformat-yaml-2.15.2.jar +0 -0
- snowflake/snowpark_connect/includes/jars/jackson-datatype-jsr310-2.15.2.jar +0 -0
- snowflake/snowpark_connect/includes/jars/jackson-mapper-asl-1.9.13.jar +0 -0
- snowflake/snowpark_connect/includes/jars/jackson-module-scala_2.12-2.15.2.jar +0 -0
- snowflake/snowpark_connect/includes/jars/json4s-ast_2.12-3.7.0-M11.jar +0 -0
- snowflake/snowpark_connect/includes/jars/json4s-core_2.12-3.7.0-M11.jar +0 -0
- snowflake/snowpark_connect/includes/jars/json4s-jackson_2.12-3.7.0-M11.jar +0 -0
- snowflake/snowpark_connect/includes/jars/json4s-scalap_2.12-3.7.0-M11.jar +0 -0
- snowflake/snowpark_connect/includes/jars/kryo-shaded-4.0.2.jar +0 -0
- snowflake/snowpark_connect/includes/jars/log4j-1.2-api-2.20.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/log4j-api-2.20.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/log4j-core-2.20.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/log4j-slf4j2-impl-2.20.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/paranamer-2.8.jar +0 -0
- snowflake/snowpark_connect/includes/jars/scala-collection-compat_2.12-2.7.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/scala-compiler-2.12.18.jar +0 -0
- snowflake/snowpark_connect/includes/jars/scala-library-2.12.18.jar +0 -0
- snowflake/snowpark_connect/includes/jars/scala-parser-combinators_2.12-2.3.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/scala-reflect-2.12.18.jar +0 -0
- snowflake/snowpark_connect/includes/jars/scala-xml_2.12-2.1.0.jar +0 -0
- snowflake/snowpark_connect/includes/jars/slf4j-api-2.0.7.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-catalyst_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-common-utils_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-core_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-graphx_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-hive-thriftserver_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-hive_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-kubernetes_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-kvstore_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-launcher_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-mesos_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-mllib-local_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-mllib_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-network-common_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-network-shuffle_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-repl_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-sketch_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-sql-api_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-sql_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-streaming_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-tags_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-unsafe_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/jars/spark-yarn_2.12-3.5.6.jar +0 -0
- snowflake/snowpark_connect/includes/python/__init__.py +21 -0
- snowflake/snowpark_connect/includes/python/pyspark/__init__.py +173 -0
- snowflake/snowpark_connect/includes/python/pyspark/_globals.py +71 -0
- snowflake/snowpark_connect/includes/python/pyspark/_typing.pyi +43 -0
- snowflake/snowpark_connect/includes/python/pyspark/accumulators.py +341 -0
- snowflake/snowpark_connect/includes/python/pyspark/broadcast.py +383 -0
- snowflake/snowpark_connect/includes/python/pyspark/cloudpickle/__init__.py +8 -0
- snowflake/snowpark_connect/includes/python/pyspark/cloudpickle/cloudpickle.py +948 -0
- snowflake/snowpark_connect/includes/python/pyspark/cloudpickle/cloudpickle_fast.py +844 -0
- snowflake/snowpark_connect/includes/python/pyspark/cloudpickle/compat.py +18 -0
- snowflake/snowpark_connect/includes/python/pyspark/conf.py +276 -0
- snowflake/snowpark_connect/includes/python/pyspark/context.py +2601 -0
- snowflake/snowpark_connect/includes/python/pyspark/daemon.py +218 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/__init__.py +70 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/error_classes.py +889 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/exceptions/__init__.py +16 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/exceptions/base.py +228 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/exceptions/captured.py +307 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/exceptions/connect.py +190 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/tests/__init__.py +16 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/tests/test_errors.py +60 -0
- snowflake/snowpark_connect/includes/python/pyspark/errors/utils.py +116 -0
- snowflake/snowpark_connect/includes/python/pyspark/files.py +165 -0
- snowflake/snowpark_connect/includes/python/pyspark/find_spark_home.py +95 -0
- snowflake/snowpark_connect/includes/python/pyspark/install.py +203 -0
- snowflake/snowpark_connect/includes/python/pyspark/instrumentation_utils.py +190 -0
- snowflake/snowpark_connect/includes/python/pyspark/java_gateway.py +248 -0
- snowflake/snowpark_connect/includes/python/pyspark/join.py +118 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/__init__.py +71 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/_typing.pyi +84 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/base.py +414 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/classification.py +4332 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/clustering.py +2188 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/common.py +146 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/__init__.py +44 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/base.py +346 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/classification.py +382 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/evaluation.py +291 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/feature.py +258 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/functions.py +77 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/io_utils.py +335 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/pipeline.py +262 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/summarizer.py +120 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/tuning.py +579 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/connect/util.py +173 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/deepspeed/__init__.py +16 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/deepspeed/deepspeed_distributor.py +165 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/deepspeed/tests/test_deepspeed_distributor.py +306 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/dl_util.py +150 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/evaluation.py +1166 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/feature.py +7474 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/fpm.py +543 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/functions.py +842 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/image.py +271 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/linalg/__init__.py +1382 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/model_cache.py +55 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/param/__init__.py +602 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/param/_shared_params_code_gen.py +368 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/param/shared.py +878 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/pipeline.py +451 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/recommendation.py +748 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/regression.py +3335 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/stat.py +523 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/__init__.py +16 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_connect_classification.py +53 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_connect_evaluation.py +50 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_connect_feature.py +43 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_connect_function.py +114 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_connect_pipeline.py +47 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_connect_summarizer.py +43 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_connect_tuning.py +46 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_legacy_mode_classification.py +238 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_legacy_mode_evaluation.py +194 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_legacy_mode_feature.py +156 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_legacy_mode_pipeline.py +184 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_legacy_mode_summarizer.py +78 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_legacy_mode_tuning.py +292 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_parity_torch_data_loader.py +50 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/connect/test_parity_torch_distributor.py +152 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_algorithms.py +456 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_base.py +96 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_dl_util.py +186 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_evaluation.py +77 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_feature.py +401 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_functions.py +528 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_image.py +82 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_linalg.py +409 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_model_cache.py +55 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_param.py +441 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_persistence.py +546 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_pipeline.py +71 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_stat.py +52 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_training_summary.py +494 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_util.py +85 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/test_wrapper.py +138 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/tuning/__init__.py +16 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/tuning/test_cv_io_basic.py +151 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/tuning/test_cv_io_nested.py +97 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/tuning/test_cv_io_pipeline.py +143 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/tuning/test_tuning.py +551 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/tuning/test_tvs_io_basic.py +137 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/tuning/test_tvs_io_nested.py +96 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tests/tuning/test_tvs_io_pipeline.py +142 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/__init__.py +16 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/data.py +100 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/distributor.py +1133 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/log_communication.py +198 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/tests/__init__.py +16 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/tests/test_data_loader.py +137 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/tests/test_distributor.py +561 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/tests/test_log_communication.py +172 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/torch/torch_run_process_wrapper.py +83 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tree.py +434 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/tuning.py +1741 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/util.py +749 -0
- snowflake/snowpark_connect/includes/python/pyspark/ml/wrapper.py +465 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/__init__.py +44 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/_typing.pyi +33 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/classification.py +989 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/clustering.py +1318 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/common.py +174 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/evaluation.py +691 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/feature.py +1085 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/fpm.py +233 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/linalg/__init__.py +1653 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/linalg/distributed.py +1662 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/random.py +698 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/recommendation.py +389 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/regression.py +1067 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/stat/KernelDensity.py +59 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/stat/__init__.py +34 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/stat/_statistics.py +409 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/stat/distribution.py +39 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/stat/test.py +86 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/tests/__init__.py +16 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/tests/test_algorithms.py +353 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/tests/test_feature.py +192 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/tests/test_linalg.py +680 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/tests/test_stat.py +206 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/tests/test_streaming_algorithms.py +471 -0
- snowflake/snowpark_connect/includes/python/pyspark/mllib/tests/test_util.py +108 -0
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import sys
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import array
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import struct
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import numpy as np
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from pyspark import since
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from pyspark.ml import linalg as newlinalg
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from pyspark.sql.types import (
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UserDefinedType,
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StructField,
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StructType,
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ArrayType,
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DoubleType,
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IntegerType,
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ByteType,
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BooleanType,
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)
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from typing import (
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Any,
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Callable,
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cast,
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Dict,
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Generic,
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Iterable,
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List,
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Optional,
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overload,
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Sequence,
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Tuple,
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Type,
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TypeVar,
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TYPE_CHECKING,
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Union,
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)
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if TYPE_CHECKING:
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from pyspark.mllib._typing import VectorLike, NormType
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from scipy.sparse import spmatrix
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from numpy.typing import ArrayLike
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QT = TypeVar("QT")
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RT = TypeVar("RT")
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__all__ = [
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"Vector",
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"DenseVector",
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"SparseVector",
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"Vectors",
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"Matrix",
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"DenseMatrix",
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"SparseMatrix",
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"Matrices",
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"QRDecomposition",
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]
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# Check whether we have SciPy. MLlib works without it too, but if we have it, some methods,
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# such as _dot and _serialize_double_vector, start to support scipy.sparse matrices.
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try:
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import scipy.sparse
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_have_scipy = True
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except BaseException:
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# No SciPy in environment, but that's okay
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_have_scipy = False
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96
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+
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97
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+
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98
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def _convert_to_vector(d: Union["VectorLike", "spmatrix", range]) -> "Vector":
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if isinstance(d, Vector):
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return d
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elif type(d) in (array.array, np.array, np.ndarray, list, tuple, range):
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return DenseVector(d)
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elif _have_scipy and scipy.sparse.issparse(d):
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assert cast("spmatrix", d).shape[1] == 1, "Expected column vector"
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# Make sure the converted csc_matrix has sorted indices.
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csc = cast("spmatrix", d).tocsc()
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if not csc.has_sorted_indices:
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csc.sort_indices()
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return SparseVector(cast("spmatrix", d).shape[0], csc.indices, csc.data)
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else:
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raise TypeError("Cannot convert type %s into Vector" % type(d))
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114
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def _vector_size(v: Union["VectorLike", "spmatrix", range]) -> int:
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"""
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116
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Returns the size of the vector.
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+
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Examples
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--------
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>>> _vector_size([1., 2., 3.])
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3
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>>> _vector_size((1., 2., 3.))
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3
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>>> _vector_size(array.array('d', [1., 2., 3.]))
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3
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126
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>>> _vector_size(np.zeros(3))
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3
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128
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>>> _vector_size(np.zeros((3, 1)))
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3
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>>> _vector_size(np.zeros((1, 3)))
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131
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+
Traceback (most recent call last):
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132
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...
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ValueError: Cannot treat an ndarray of shape (1, 3) as a vector
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"""
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135
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if isinstance(v, Vector):
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return len(v)
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elif type(v) in (array.array, list, tuple, range):
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return len(v)
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139
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elif type(v) == np.ndarray:
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+
if v.ndim == 1 or (v.ndim == 2 and v.shape[1] == 1):
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141
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return len(v)
|
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+
else:
|
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+
raise ValueError("Cannot treat an ndarray of shape %s as a vector" % str(v.shape))
|
|
144
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+
elif _have_scipy and scipy.sparse.issparse(v):
|
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145
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+
assert cast("spmatrix", v).shape[1] == 1, "Expected column vector"
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|
146
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+
return cast("spmatrix", v).shape[0]
|
|
147
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+
else:
|
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148
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raise TypeError("Cannot treat type %s as a vector" % type(v))
|
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149
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+
|
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150
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+
|
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151
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+
def _format_float(f: float, digits: int = 4) -> str:
|
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152
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+
s = str(round(f, digits))
|
|
153
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+
if "." in s:
|
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154
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+
s = s[: s.index(".") + 1 + digits]
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return s
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156
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+
|
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157
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+
|
|
158
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+
def _format_float_list(xs: Iterable[float]) -> List[str]:
|
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159
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+
return [_format_float(x) for x in xs]
|
|
160
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+
|
|
161
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+
|
|
162
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+
def _double_to_long_bits(value: float) -> int:
|
|
163
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+
if np.isnan(value):
|
|
164
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value = float("nan")
|
|
165
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+
# pack double into 64 bits, then unpack as long int
|
|
166
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+
return struct.unpack("Q", struct.pack("d", value))[0]
|
|
167
|
+
|
|
168
|
+
|
|
169
|
+
class VectorUDT(UserDefinedType):
|
|
170
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+
"""
|
|
171
|
+
SQL user-defined type (UDT) for Vector.
|
|
172
|
+
"""
|
|
173
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+
|
|
174
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+
@classmethod
|
|
175
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+
def sqlType(cls) -> StructType:
|
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176
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return StructType(
|
|
177
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+
[
|
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178
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+
StructField("type", ByteType(), False),
|
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179
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StructField("size", IntegerType(), True),
|
|
180
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+
StructField("indices", ArrayType(IntegerType(), False), True),
|
|
181
|
+
StructField("values", ArrayType(DoubleType(), False), True),
|
|
182
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+
]
|
|
183
|
+
)
|
|
184
|
+
|
|
185
|
+
@classmethod
|
|
186
|
+
def module(cls) -> str:
|
|
187
|
+
return "pyspark.mllib.linalg"
|
|
188
|
+
|
|
189
|
+
@classmethod
|
|
190
|
+
def scalaUDT(cls) -> str:
|
|
191
|
+
return "org.apache.spark.mllib.linalg.VectorUDT"
|
|
192
|
+
|
|
193
|
+
def serialize(
|
|
194
|
+
self, obj: "Vector"
|
|
195
|
+
) -> Tuple[int, Optional[int], Optional[List[int]], List[float]]:
|
|
196
|
+
if isinstance(obj, SparseVector):
|
|
197
|
+
indices = [int(i) for i in obj.indices]
|
|
198
|
+
values = [float(v) for v in obj.values]
|
|
199
|
+
return (0, obj.size, indices, values)
|
|
200
|
+
elif isinstance(obj, DenseVector):
|
|
201
|
+
values = [float(v) for v in obj] # type: ignore[attr-defined]
|
|
202
|
+
return (1, None, None, values)
|
|
203
|
+
else:
|
|
204
|
+
raise TypeError("cannot serialize %r of type %r" % (obj, type(obj)))
|
|
205
|
+
|
|
206
|
+
def deserialize(
|
|
207
|
+
self, datum: Tuple[int, Optional[int], Optional[List[int]], List[float]]
|
|
208
|
+
) -> "Vector":
|
|
209
|
+
assert (
|
|
210
|
+
len(datum) == 4
|
|
211
|
+
), "VectorUDT.deserialize given row with length %d but requires 4" % len(datum)
|
|
212
|
+
tpe = datum[0]
|
|
213
|
+
if tpe == 0:
|
|
214
|
+
return SparseVector(cast(int, datum[1]), cast(List[int], datum[2]), datum[3])
|
|
215
|
+
elif tpe == 1:
|
|
216
|
+
return DenseVector(datum[3])
|
|
217
|
+
else:
|
|
218
|
+
raise ValueError("do not recognize type %r" % tpe)
|
|
219
|
+
|
|
220
|
+
def simpleString(self) -> str:
|
|
221
|
+
return "vector"
|
|
222
|
+
|
|
223
|
+
|
|
224
|
+
class MatrixUDT(UserDefinedType):
|
|
225
|
+
"""
|
|
226
|
+
SQL user-defined type (UDT) for Matrix.
|
|
227
|
+
"""
|
|
228
|
+
|
|
229
|
+
@classmethod
|
|
230
|
+
def sqlType(cls) -> StructType:
|
|
231
|
+
return StructType(
|
|
232
|
+
[
|
|
233
|
+
StructField("type", ByteType(), False),
|
|
234
|
+
StructField("numRows", IntegerType(), False),
|
|
235
|
+
StructField("numCols", IntegerType(), False),
|
|
236
|
+
StructField("colPtrs", ArrayType(IntegerType(), False), True),
|
|
237
|
+
StructField("rowIndices", ArrayType(IntegerType(), False), True),
|
|
238
|
+
StructField("values", ArrayType(DoubleType(), False), True),
|
|
239
|
+
StructField("isTransposed", BooleanType(), False),
|
|
240
|
+
]
|
|
241
|
+
)
|
|
242
|
+
|
|
243
|
+
@classmethod
|
|
244
|
+
def module(cls) -> str:
|
|
245
|
+
return "pyspark.mllib.linalg"
|
|
246
|
+
|
|
247
|
+
@classmethod
|
|
248
|
+
def scalaUDT(cls) -> str:
|
|
249
|
+
return "org.apache.spark.mllib.linalg.MatrixUDT"
|
|
250
|
+
|
|
251
|
+
def serialize(
|
|
252
|
+
self, obj: "Matrix"
|
|
253
|
+
) -> Tuple[int, int, int, Optional[List[int]], Optional[List[int]], List[float], bool]:
|
|
254
|
+
if isinstance(obj, SparseMatrix):
|
|
255
|
+
colPtrs = [int(i) for i in obj.colPtrs]
|
|
256
|
+
rowIndices = [int(i) for i in obj.rowIndices]
|
|
257
|
+
values = [float(v) for v in obj.values]
|
|
258
|
+
return (
|
|
259
|
+
0,
|
|
260
|
+
obj.numRows,
|
|
261
|
+
obj.numCols,
|
|
262
|
+
colPtrs,
|
|
263
|
+
rowIndices,
|
|
264
|
+
values,
|
|
265
|
+
bool(obj.isTransposed),
|
|
266
|
+
)
|
|
267
|
+
elif isinstance(obj, DenseMatrix):
|
|
268
|
+
values = [float(v) for v in obj.values]
|
|
269
|
+
return (1, obj.numRows, obj.numCols, None, None, values, bool(obj.isTransposed))
|
|
270
|
+
else:
|
|
271
|
+
raise TypeError("cannot serialize type %r" % (type(obj)))
|
|
272
|
+
|
|
273
|
+
def deserialize(
|
|
274
|
+
self,
|
|
275
|
+
datum: Tuple[int, int, int, Optional[List[int]], Optional[List[int]], List[float], bool],
|
|
276
|
+
) -> "Matrix":
|
|
277
|
+
assert (
|
|
278
|
+
len(datum) == 7
|
|
279
|
+
), "MatrixUDT.deserialize given row with length %d but requires 7" % len(datum)
|
|
280
|
+
tpe = datum[0]
|
|
281
|
+
if tpe == 0:
|
|
282
|
+
return SparseMatrix(
|
|
283
|
+
datum[1],
|
|
284
|
+
datum[2],
|
|
285
|
+
cast(List[int], datum[3]),
|
|
286
|
+
cast(List[int], datum[4]),
|
|
287
|
+
datum[5],
|
|
288
|
+
datum[6],
|
|
289
|
+
)
|
|
290
|
+
elif tpe == 1:
|
|
291
|
+
return DenseMatrix(datum[1], datum[2], datum[5], datum[6])
|
|
292
|
+
else:
|
|
293
|
+
raise ValueError("do not recognize type %r" % tpe)
|
|
294
|
+
|
|
295
|
+
def simpleString(self) -> str:
|
|
296
|
+
return "matrix"
|
|
297
|
+
|
|
298
|
+
|
|
299
|
+
class Vector:
|
|
300
|
+
|
|
301
|
+
__UDT__ = VectorUDT()
|
|
302
|
+
|
|
303
|
+
"""
|
|
304
|
+
Abstract class for DenseVector and SparseVector
|
|
305
|
+
"""
|
|
306
|
+
|
|
307
|
+
def toArray(self) -> np.ndarray:
|
|
308
|
+
"""
|
|
309
|
+
Convert the vector into an numpy.ndarray
|
|
310
|
+
|
|
311
|
+
Returns
|
|
312
|
+
-------
|
|
313
|
+
:py:class:`numpy.ndarray`
|
|
314
|
+
"""
|
|
315
|
+
raise NotImplementedError
|
|
316
|
+
|
|
317
|
+
def asML(self) -> newlinalg.Vector:
|
|
318
|
+
"""
|
|
319
|
+
Convert this vector to the new mllib-local representation.
|
|
320
|
+
This does NOT copy the data; it copies references.
|
|
321
|
+
|
|
322
|
+
Returns
|
|
323
|
+
-------
|
|
324
|
+
:py:class:`pyspark.ml.linalg.Vector`
|
|
325
|
+
"""
|
|
326
|
+
raise NotImplementedError
|
|
327
|
+
|
|
328
|
+
def __len__(self) -> int:
|
|
329
|
+
raise NotImplementedError
|
|
330
|
+
|
|
331
|
+
|
|
332
|
+
class DenseVector(Vector):
|
|
333
|
+
"""
|
|
334
|
+
A dense vector represented by a value array. We use numpy array for
|
|
335
|
+
storage and arithmetics will be delegated to the underlying numpy
|
|
336
|
+
array.
|
|
337
|
+
|
|
338
|
+
Examples
|
|
339
|
+
--------
|
|
340
|
+
>>> v = Vectors.dense([1.0, 2.0])
|
|
341
|
+
>>> u = Vectors.dense([3.0, 4.0])
|
|
342
|
+
>>> v + u
|
|
343
|
+
DenseVector([4.0, 6.0])
|
|
344
|
+
>>> 2 - v
|
|
345
|
+
DenseVector([1.0, 0.0])
|
|
346
|
+
>>> v / 2
|
|
347
|
+
DenseVector([0.5, 1.0])
|
|
348
|
+
>>> v * u
|
|
349
|
+
DenseVector([3.0, 8.0])
|
|
350
|
+
>>> u / v
|
|
351
|
+
DenseVector([3.0, 2.0])
|
|
352
|
+
>>> u % 2
|
|
353
|
+
DenseVector([1.0, 0.0])
|
|
354
|
+
>>> -v
|
|
355
|
+
DenseVector([-1.0, -2.0])
|
|
356
|
+
"""
|
|
357
|
+
|
|
358
|
+
def __init__(self, ar: Union[bytes, np.ndarray, Iterable[float]]):
|
|
359
|
+
ar_: np.ndarray
|
|
360
|
+
if isinstance(ar, bytes):
|
|
361
|
+
ar_ = np.frombuffer(ar, dtype=np.float64)
|
|
362
|
+
elif not isinstance(ar, np.ndarray):
|
|
363
|
+
ar_ = np.array(ar, dtype=np.float64)
|
|
364
|
+
else:
|
|
365
|
+
ar_ = ar.astype(np.float64) if ar.dtype != np.float64 else ar
|
|
366
|
+
self.array = ar_
|
|
367
|
+
|
|
368
|
+
@staticmethod
|
|
369
|
+
def parse(s: str) -> "DenseVector":
|
|
370
|
+
"""
|
|
371
|
+
Parse string representation back into the DenseVector.
|
|
372
|
+
|
|
373
|
+
Examples
|
|
374
|
+
--------
|
|
375
|
+
>>> DenseVector.parse(' [ 0.0,1.0,2.0, 3.0]')
|
|
376
|
+
DenseVector([0.0, 1.0, 2.0, 3.0])
|
|
377
|
+
"""
|
|
378
|
+
start = s.find("[")
|
|
379
|
+
if start == -1:
|
|
380
|
+
raise ValueError("Array should start with '['.")
|
|
381
|
+
end = s.find("]")
|
|
382
|
+
if end == -1:
|
|
383
|
+
raise ValueError("Array should end with ']'.")
|
|
384
|
+
s = s[start + 1 : end]
|
|
385
|
+
|
|
386
|
+
try:
|
|
387
|
+
values = [float(val) for val in s.split(",") if val]
|
|
388
|
+
except ValueError:
|
|
389
|
+
raise ValueError("Unable to parse values from %s" % s)
|
|
390
|
+
return DenseVector(values)
|
|
391
|
+
|
|
392
|
+
def __reduce__(self) -> Tuple[Type["DenseVector"], Tuple[bytes]]:
|
|
393
|
+
return DenseVector, (self.array.tobytes(),)
|
|
394
|
+
|
|
395
|
+
def numNonzeros(self) -> int:
|
|
396
|
+
"""
|
|
397
|
+
Number of nonzero elements. This scans all active values and count non zeros
|
|
398
|
+
"""
|
|
399
|
+
return np.count_nonzero(self.array)
|
|
400
|
+
|
|
401
|
+
def norm(self, p: "NormType") -> np.float64:
|
|
402
|
+
"""
|
|
403
|
+
Calculates the norm of a DenseVector.
|
|
404
|
+
|
|
405
|
+
Examples
|
|
406
|
+
--------
|
|
407
|
+
>>> a = DenseVector([0, -1, 2, -3])
|
|
408
|
+
>>> a.norm(2)
|
|
409
|
+
3.7...
|
|
410
|
+
>>> a.norm(1)
|
|
411
|
+
6.0
|
|
412
|
+
"""
|
|
413
|
+
return np.linalg.norm(self.array, p)
|
|
414
|
+
|
|
415
|
+
def dot(self, other: Iterable[float]) -> np.float64:
|
|
416
|
+
"""
|
|
417
|
+
Compute the dot product of two Vectors. We support
|
|
418
|
+
(Numpy array, list, SparseVector, or SciPy sparse)
|
|
419
|
+
and a target NumPy array that is either 1- or 2-dimensional.
|
|
420
|
+
Equivalent to calling numpy.dot of the two vectors.
|
|
421
|
+
|
|
422
|
+
Examples
|
|
423
|
+
--------
|
|
424
|
+
>>> dense = DenseVector(array.array('d', [1., 2.]))
|
|
425
|
+
>>> dense.dot(dense)
|
|
426
|
+
5.0
|
|
427
|
+
>>> dense.dot(SparseVector(2, [0, 1], [2., 1.]))
|
|
428
|
+
4.0
|
|
429
|
+
>>> dense.dot(range(1, 3))
|
|
430
|
+
5.0
|
|
431
|
+
>>> dense.dot(np.array(range(1, 3)))
|
|
432
|
+
5.0
|
|
433
|
+
>>> dense.dot([1.,])
|
|
434
|
+
Traceback (most recent call last):
|
|
435
|
+
...
|
|
436
|
+
AssertionError: dimension mismatch
|
|
437
|
+
>>> dense.dot(np.reshape([1., 2., 3., 4.], (2, 2), order='F'))
|
|
438
|
+
array([ 5., 11.])
|
|
439
|
+
>>> dense.dot(np.reshape([1., 2., 3.], (3, 1), order='F'))
|
|
440
|
+
Traceback (most recent call last):
|
|
441
|
+
...
|
|
442
|
+
AssertionError: dimension mismatch
|
|
443
|
+
"""
|
|
444
|
+
if type(other) == np.ndarray:
|
|
445
|
+
if other.ndim > 1:
|
|
446
|
+
assert len(self) == other.shape[0], "dimension mismatch"
|
|
447
|
+
return np.dot(self.array, other)
|
|
448
|
+
elif _have_scipy and scipy.sparse.issparse(other):
|
|
449
|
+
assert len(self) == cast("spmatrix", other).shape[0], "dimension mismatch"
|
|
450
|
+
return cast("spmatrix", other).transpose().dot(self.toArray())
|
|
451
|
+
else:
|
|
452
|
+
assert len(self) == _vector_size(other), "dimension mismatch"
|
|
453
|
+
if isinstance(other, SparseVector):
|
|
454
|
+
return other.dot(self)
|
|
455
|
+
elif isinstance(other, Vector):
|
|
456
|
+
return np.dot(self.toArray(), other.toArray())
|
|
457
|
+
else:
|
|
458
|
+
return np.dot(self.toArray(), cast("ArrayLike", other))
|
|
459
|
+
|
|
460
|
+
def squared_distance(self, other: Iterable[float]) -> np.float64:
|
|
461
|
+
"""
|
|
462
|
+
Squared distance of two Vectors.
|
|
463
|
+
|
|
464
|
+
Examples
|
|
465
|
+
--------
|
|
466
|
+
>>> dense1 = DenseVector(array.array('d', [1., 2.]))
|
|
467
|
+
>>> dense1.squared_distance(dense1)
|
|
468
|
+
0.0
|
|
469
|
+
>>> dense2 = np.array([2., 1.])
|
|
470
|
+
>>> dense1.squared_distance(dense2)
|
|
471
|
+
2.0
|
|
472
|
+
>>> dense3 = [2., 1.]
|
|
473
|
+
>>> dense1.squared_distance(dense3)
|
|
474
|
+
2.0
|
|
475
|
+
>>> sparse1 = SparseVector(2, [0, 1], [2., 1.])
|
|
476
|
+
>>> dense1.squared_distance(sparse1)
|
|
477
|
+
2.0
|
|
478
|
+
>>> dense1.squared_distance([1.,])
|
|
479
|
+
Traceback (most recent call last):
|
|
480
|
+
...
|
|
481
|
+
AssertionError: dimension mismatch
|
|
482
|
+
>>> dense1.squared_distance(SparseVector(1, [0,], [1.,]))
|
|
483
|
+
Traceback (most recent call last):
|
|
484
|
+
...
|
|
485
|
+
AssertionError: dimension mismatch
|
|
486
|
+
"""
|
|
487
|
+
assert len(self) == _vector_size(other), "dimension mismatch"
|
|
488
|
+
if isinstance(other, SparseVector):
|
|
489
|
+
return other.squared_distance(self)
|
|
490
|
+
elif _have_scipy and scipy.sparse.issparse(other):
|
|
491
|
+
return _convert_to_vector(other).squared_distance(self) # type: ignore[attr-defined]
|
|
492
|
+
|
|
493
|
+
if isinstance(other, Vector):
|
|
494
|
+
other = other.toArray()
|
|
495
|
+
elif not isinstance(other, np.ndarray):
|
|
496
|
+
other = np.array(other)
|
|
497
|
+
diff: np.ndarray = self.toArray() - other
|
|
498
|
+
return np.dot(diff, diff)
|
|
499
|
+
|
|
500
|
+
def toArray(self) -> np.ndarray:
|
|
501
|
+
"""
|
|
502
|
+
Returns an numpy.ndarray
|
|
503
|
+
"""
|
|
504
|
+
return self.array
|
|
505
|
+
|
|
506
|
+
def asML(self) -> newlinalg.DenseVector:
|
|
507
|
+
"""
|
|
508
|
+
Convert this vector to the new mllib-local representation.
|
|
509
|
+
This does NOT copy the data; it copies references.
|
|
510
|
+
|
|
511
|
+
.. versionadded:: 2.0.0
|
|
512
|
+
|
|
513
|
+
Returns
|
|
514
|
+
-------
|
|
515
|
+
:py:class:`pyspark.ml.linalg.DenseVector`
|
|
516
|
+
"""
|
|
517
|
+
return newlinalg.DenseVector(self.array)
|
|
518
|
+
|
|
519
|
+
@property
|
|
520
|
+
def values(self) -> np.ndarray:
|
|
521
|
+
"""
|
|
522
|
+
Returns a list of values
|
|
523
|
+
"""
|
|
524
|
+
return self.array
|
|
525
|
+
|
|
526
|
+
@overload
|
|
527
|
+
def __getitem__(self, item: int) -> np.float64:
|
|
528
|
+
...
|
|
529
|
+
|
|
530
|
+
@overload
|
|
531
|
+
def __getitem__(self, item: slice) -> np.ndarray:
|
|
532
|
+
...
|
|
533
|
+
|
|
534
|
+
def __getitem__(self, item: Union[int, slice]) -> Union[np.float64, np.ndarray]:
|
|
535
|
+
return self.array[item]
|
|
536
|
+
|
|
537
|
+
def __len__(self) -> int:
|
|
538
|
+
return len(self.array)
|
|
539
|
+
|
|
540
|
+
def __str__(self) -> str:
|
|
541
|
+
return "[" + ",".join([str(v) for v in self.array]) + "]"
|
|
542
|
+
|
|
543
|
+
def __repr__(self) -> str:
|
|
544
|
+
return "DenseVector([%s])" % (", ".join(_format_float(i) for i in self.array))
|
|
545
|
+
|
|
546
|
+
def __eq__(self, other: Any) -> bool:
|
|
547
|
+
if isinstance(other, DenseVector):
|
|
548
|
+
return np.array_equal(self.array, other.array)
|
|
549
|
+
elif isinstance(other, SparseVector):
|
|
550
|
+
if len(self) != other.size:
|
|
551
|
+
return False
|
|
552
|
+
return Vectors._equals(list(range(len(self))), self.array, other.indices, other.values)
|
|
553
|
+
return False
|
|
554
|
+
|
|
555
|
+
def __ne__(self, other: Any) -> bool:
|
|
556
|
+
return not self == other
|
|
557
|
+
|
|
558
|
+
def __hash__(self) -> int:
|
|
559
|
+
size = len(self)
|
|
560
|
+
result = 31 + size
|
|
561
|
+
nnz = 0
|
|
562
|
+
i = 0
|
|
563
|
+
while i < size and nnz < 128:
|
|
564
|
+
if self.array[i] != 0:
|
|
565
|
+
result = 31 * result + i
|
|
566
|
+
bits = _double_to_long_bits(self.array[i])
|
|
567
|
+
result = 31 * result + (bits ^ (bits >> 32))
|
|
568
|
+
nnz += 1
|
|
569
|
+
i += 1
|
|
570
|
+
return result
|
|
571
|
+
|
|
572
|
+
def __getattr__(self, item: str) -> Any:
|
|
573
|
+
return getattr(self.array, item)
|
|
574
|
+
|
|
575
|
+
def __neg__(self) -> "DenseVector":
|
|
576
|
+
return DenseVector(-self.array)
|
|
577
|
+
|
|
578
|
+
def _delegate(op: str) -> Callable[["DenseVector", Any], "DenseVector"]: # type: ignore[misc]
|
|
579
|
+
def func(self: "DenseVector", other: Any) -> "DenseVector":
|
|
580
|
+
if isinstance(other, DenseVector):
|
|
581
|
+
other = other.array
|
|
582
|
+
return DenseVector(getattr(self.array, op)(other))
|
|
583
|
+
|
|
584
|
+
return func
|
|
585
|
+
|
|
586
|
+
__add__ = _delegate("__add__")
|
|
587
|
+
__sub__ = _delegate("__sub__")
|
|
588
|
+
__mul__ = _delegate("__mul__")
|
|
589
|
+
__div__ = _delegate("__div__")
|
|
590
|
+
__truediv__ = _delegate("__truediv__")
|
|
591
|
+
__mod__ = _delegate("__mod__")
|
|
592
|
+
__radd__ = _delegate("__radd__")
|
|
593
|
+
__rsub__ = _delegate("__rsub__")
|
|
594
|
+
__rmul__ = _delegate("__rmul__")
|
|
595
|
+
__rdiv__ = _delegate("__rdiv__")
|
|
596
|
+
__rtruediv__ = _delegate("__rtruediv__")
|
|
597
|
+
__rmod__ = _delegate("__rmod__")
|
|
598
|
+
|
|
599
|
+
|
|
600
|
+
class SparseVector(Vector):
|
|
601
|
+
"""
|
|
602
|
+
A simple sparse vector class for passing data to MLlib. Users may
|
|
603
|
+
alternatively pass SciPy's {scipy.sparse} data types.
|
|
604
|
+
"""
|
|
605
|
+
|
|
606
|
+
@overload
|
|
607
|
+
def __init__(self, size: int, __indices: bytes, __values: bytes):
|
|
608
|
+
...
|
|
609
|
+
|
|
610
|
+
@overload
|
|
611
|
+
def __init__(self, size: int, *args: Tuple[int, float]):
|
|
612
|
+
...
|
|
613
|
+
|
|
614
|
+
@overload
|
|
615
|
+
def __init__(self, size: int, __indices: Iterable[int], __values: Iterable[float]):
|
|
616
|
+
...
|
|
617
|
+
|
|
618
|
+
@overload
|
|
619
|
+
def __init__(self, size: int, __pairs: Iterable[Tuple[int, float]]):
|
|
620
|
+
...
|
|
621
|
+
|
|
622
|
+
@overload
|
|
623
|
+
def __init__(self, size: int, __map: Dict[int, float]):
|
|
624
|
+
...
|
|
625
|
+
|
|
626
|
+
def __init__(
|
|
627
|
+
self,
|
|
628
|
+
size: int,
|
|
629
|
+
*args: Union[
|
|
630
|
+
bytes, Tuple[int, float], Iterable[float], Iterable[Tuple[int, float]], Dict[int, float]
|
|
631
|
+
],
|
|
632
|
+
):
|
|
633
|
+
"""
|
|
634
|
+
Create a sparse vector, using either a dictionary, a list of
|
|
635
|
+
(index, value) pairs, or two separate arrays of indices and
|
|
636
|
+
values (sorted by index).
|
|
637
|
+
|
|
638
|
+
Parameters
|
|
639
|
+
----------
|
|
640
|
+
size : int
|
|
641
|
+
Size of the vector.
|
|
642
|
+
args
|
|
643
|
+
Active entries, as a dictionary {index: value, ...},
|
|
644
|
+
a list of tuples [(index, value), ...], or a list of strictly
|
|
645
|
+
increasing indices and a list of corresponding values [index, ...],
|
|
646
|
+
[value, ...]. Inactive entries are treated as zeros.
|
|
647
|
+
|
|
648
|
+
Examples
|
|
649
|
+
--------
|
|
650
|
+
>>> SparseVector(4, {1: 1.0, 3: 5.5})
|
|
651
|
+
SparseVector(4, {1: 1.0, 3: 5.5})
|
|
652
|
+
>>> SparseVector(4, [(1, 1.0), (3, 5.5)])
|
|
653
|
+
SparseVector(4, {1: 1.0, 3: 5.5})
|
|
654
|
+
>>> SparseVector(4, [1, 3], [1.0, 5.5])
|
|
655
|
+
SparseVector(4, {1: 1.0, 3: 5.5})
|
|
656
|
+
"""
|
|
657
|
+
self.size = int(size)
|
|
658
|
+
""" Size of the vector. """
|
|
659
|
+
assert 1 <= len(args) <= 2, "must pass either 2 or 3 arguments"
|
|
660
|
+
if len(args) == 1:
|
|
661
|
+
pairs = args[0]
|
|
662
|
+
if type(pairs) == dict:
|
|
663
|
+
pairs = pairs.items()
|
|
664
|
+
pairs = cast(Iterable[Tuple[int, float]], sorted(pairs))
|
|
665
|
+
self.indices = np.array([p[0] for p in pairs], dtype=np.int32)
|
|
666
|
+
""" A list of indices corresponding to active entries. """
|
|
667
|
+
self.values = np.array([p[1] for p in pairs], dtype=np.float64)
|
|
668
|
+
""" A list of values corresponding to active entries. """
|
|
669
|
+
else:
|
|
670
|
+
if isinstance(args[0], bytes):
|
|
671
|
+
assert isinstance(args[1], bytes), "values should be string too"
|
|
672
|
+
if args[0]:
|
|
673
|
+
self.indices = np.frombuffer(args[0], np.int32)
|
|
674
|
+
self.values = np.frombuffer(args[1], np.float64)
|
|
675
|
+
else:
|
|
676
|
+
# np.frombuffer() doesn't work well with empty string in older version
|
|
677
|
+
self.indices = np.array([], dtype=np.int32)
|
|
678
|
+
self.values = np.array([], dtype=np.float64)
|
|
679
|
+
else:
|
|
680
|
+
self.indices = np.array(args[0], dtype=np.int32)
|
|
681
|
+
self.values = np.array(args[1], dtype=np.float64)
|
|
682
|
+
assert len(self.indices) == len(self.values), "index and value arrays not same length"
|
|
683
|
+
for i in range(len(self.indices) - 1):
|
|
684
|
+
if self.indices[i] >= self.indices[i + 1]:
|
|
685
|
+
raise TypeError(
|
|
686
|
+
"Indices %s and %s are not strictly increasing"
|
|
687
|
+
% (self.indices[i], self.indices[i + 1])
|
|
688
|
+
)
|
|
689
|
+
|
|
690
|
+
def numNonzeros(self) -> int:
|
|
691
|
+
"""
|
|
692
|
+
Number of nonzero elements. This scans all active values and count non zeros.
|
|
693
|
+
"""
|
|
694
|
+
return np.count_nonzero(self.values)
|
|
695
|
+
|
|
696
|
+
def norm(self, p: "NormType") -> np.float64:
|
|
697
|
+
"""
|
|
698
|
+
Calculates the norm of a SparseVector.
|
|
699
|
+
|
|
700
|
+
Examples
|
|
701
|
+
--------
|
|
702
|
+
>>> a = SparseVector(4, [0, 1], [3., -4.])
|
|
703
|
+
>>> a.norm(1)
|
|
704
|
+
7.0
|
|
705
|
+
>>> a.norm(2)
|
|
706
|
+
5.0
|
|
707
|
+
"""
|
|
708
|
+
return np.linalg.norm(self.values, p)
|
|
709
|
+
|
|
710
|
+
def __reduce__(self) -> Tuple[Type["SparseVector"], Tuple[int, bytes, bytes]]:
|
|
711
|
+
return (
|
|
712
|
+
SparseVector,
|
|
713
|
+
(
|
|
714
|
+
self.size,
|
|
715
|
+
self.indices.tobytes(),
|
|
716
|
+
self.values.tobytes(),
|
|
717
|
+
),
|
|
718
|
+
)
|
|
719
|
+
|
|
720
|
+
@staticmethod
|
|
721
|
+
def parse(s: str) -> "SparseVector":
|
|
722
|
+
"""
|
|
723
|
+
Parse string representation back into the SparseVector.
|
|
724
|
+
|
|
725
|
+
Examples
|
|
726
|
+
--------
|
|
727
|
+
>>> SparseVector.parse(' (4, [0,1 ],[ 4.0,5.0] )')
|
|
728
|
+
SparseVector(4, {0: 4.0, 1: 5.0})
|
|
729
|
+
"""
|
|
730
|
+
start = s.find("(")
|
|
731
|
+
if start == -1:
|
|
732
|
+
raise ValueError("Tuple should start with '('")
|
|
733
|
+
end = s.find(")")
|
|
734
|
+
if end == -1:
|
|
735
|
+
raise ValueError("Tuple should end with ')'")
|
|
736
|
+
s = s[start + 1 : end].strip()
|
|
737
|
+
|
|
738
|
+
size = s[: s.find(",")]
|
|
739
|
+
try:
|
|
740
|
+
size = int(size) # type: ignore[assignment]
|
|
741
|
+
except ValueError:
|
|
742
|
+
raise ValueError("Cannot parse size %s." % size)
|
|
743
|
+
|
|
744
|
+
ind_start = s.find("[")
|
|
745
|
+
if ind_start == -1:
|
|
746
|
+
raise ValueError("Indices array should start with '['.")
|
|
747
|
+
ind_end = s.find("]")
|
|
748
|
+
if ind_end == -1:
|
|
749
|
+
raise ValueError("Indices array should end with ']'")
|
|
750
|
+
new_s = s[ind_start + 1 : ind_end]
|
|
751
|
+
ind_list = new_s.split(",")
|
|
752
|
+
try:
|
|
753
|
+
indices = [int(ind) for ind in ind_list if ind]
|
|
754
|
+
except ValueError:
|
|
755
|
+
raise ValueError("Unable to parse indices from %s." % new_s)
|
|
756
|
+
s = s[ind_end + 1 :].strip()
|
|
757
|
+
|
|
758
|
+
val_start = s.find("[")
|
|
759
|
+
if val_start == -1:
|
|
760
|
+
raise ValueError("Values array should start with '['.")
|
|
761
|
+
val_end = s.find("]")
|
|
762
|
+
if val_end == -1:
|
|
763
|
+
raise ValueError("Values array should end with ']'.")
|
|
764
|
+
val_list = s[val_start + 1 : val_end].split(",")
|
|
765
|
+
try:
|
|
766
|
+
values = [float(val) for val in val_list if val]
|
|
767
|
+
except ValueError:
|
|
768
|
+
raise ValueError("Unable to parse values from %s." % s)
|
|
769
|
+
return SparseVector(cast(int, size), indices, values)
|
|
770
|
+
|
|
771
|
+
def dot(self, other: Iterable[float]) -> np.float64:
|
|
772
|
+
"""
|
|
773
|
+
Dot product with a SparseVector or 1- or 2-dimensional Numpy array.
|
|
774
|
+
|
|
775
|
+
Examples
|
|
776
|
+
--------
|
|
777
|
+
>>> a = SparseVector(4, [1, 3], [3.0, 4.0])
|
|
778
|
+
>>> a.dot(a)
|
|
779
|
+
25.0
|
|
780
|
+
>>> a.dot(array.array('d', [1., 2., 3., 4.]))
|
|
781
|
+
22.0
|
|
782
|
+
>>> b = SparseVector(4, [2], [1.0])
|
|
783
|
+
>>> a.dot(b)
|
|
784
|
+
0.0
|
|
785
|
+
>>> a.dot(np.array([[1, 1], [2, 2], [3, 3], [4, 4]]))
|
|
786
|
+
array([ 22., 22.])
|
|
787
|
+
>>> a.dot([1., 2., 3.])
|
|
788
|
+
Traceback (most recent call last):
|
|
789
|
+
...
|
|
790
|
+
AssertionError: dimension mismatch
|
|
791
|
+
>>> a.dot(np.array([1., 2.]))
|
|
792
|
+
Traceback (most recent call last):
|
|
793
|
+
...
|
|
794
|
+
AssertionError: dimension mismatch
|
|
795
|
+
>>> a.dot(DenseVector([1., 2.]))
|
|
796
|
+
Traceback (most recent call last):
|
|
797
|
+
...
|
|
798
|
+
AssertionError: dimension mismatch
|
|
799
|
+
>>> a.dot(np.zeros((3, 2)))
|
|
800
|
+
Traceback (most recent call last):
|
|
801
|
+
...
|
|
802
|
+
AssertionError: dimension mismatch
|
|
803
|
+
"""
|
|
804
|
+
|
|
805
|
+
if isinstance(other, np.ndarray):
|
|
806
|
+
if other.ndim not in [2, 1]:
|
|
807
|
+
raise ValueError("Cannot call dot with %d-dimensional array" % other.ndim)
|
|
808
|
+
assert len(self) == other.shape[0], "dimension mismatch"
|
|
809
|
+
return np.dot(self.values, other[self.indices])
|
|
810
|
+
|
|
811
|
+
assert len(self) == _vector_size(other), "dimension mismatch"
|
|
812
|
+
|
|
813
|
+
if isinstance(other, DenseVector):
|
|
814
|
+
return np.dot(other.array[self.indices], self.values)
|
|
815
|
+
|
|
816
|
+
elif isinstance(other, SparseVector):
|
|
817
|
+
# Find out common indices.
|
|
818
|
+
self_cmind = np.in1d(self.indices, other.indices, assume_unique=True)
|
|
819
|
+
self_values = self.values[self_cmind]
|
|
820
|
+
if self_values.size == 0:
|
|
821
|
+
return np.float64(0.0)
|
|
822
|
+
else:
|
|
823
|
+
other_cmind = np.in1d(other.indices, self.indices, assume_unique=True)
|
|
824
|
+
return np.dot(self_values, other.values[other_cmind])
|
|
825
|
+
|
|
826
|
+
else:
|
|
827
|
+
return self.dot(_convert_to_vector(other)) # type: ignore[arg-type]
|
|
828
|
+
|
|
829
|
+
def squared_distance(self, other: Iterable[float]) -> np.float64:
|
|
830
|
+
"""
|
|
831
|
+
Squared distance from a SparseVector or 1-dimensional NumPy array.
|
|
832
|
+
|
|
833
|
+
Examples
|
|
834
|
+
--------
|
|
835
|
+
>>> a = SparseVector(4, [1, 3], [3.0, 4.0])
|
|
836
|
+
>>> a.squared_distance(a)
|
|
837
|
+
0.0
|
|
838
|
+
>>> a.squared_distance(array.array('d', [1., 2., 3., 4.]))
|
|
839
|
+
11.0
|
|
840
|
+
>>> a.squared_distance(np.array([1., 2., 3., 4.]))
|
|
841
|
+
11.0
|
|
842
|
+
>>> b = SparseVector(4, [2], [1.0])
|
|
843
|
+
>>> a.squared_distance(b)
|
|
844
|
+
26.0
|
|
845
|
+
>>> b.squared_distance(a)
|
|
846
|
+
26.0
|
|
847
|
+
>>> b.squared_distance([1., 2.])
|
|
848
|
+
Traceback (most recent call last):
|
|
849
|
+
...
|
|
850
|
+
AssertionError: dimension mismatch
|
|
851
|
+
>>> b.squared_distance(SparseVector(3, [1,], [1.0,]))
|
|
852
|
+
Traceback (most recent call last):
|
|
853
|
+
...
|
|
854
|
+
AssertionError: dimension mismatch
|
|
855
|
+
"""
|
|
856
|
+
assert len(self) == _vector_size(other), "dimension mismatch"
|
|
857
|
+
|
|
858
|
+
if isinstance(other, np.ndarray) or isinstance(other, DenseVector):
|
|
859
|
+
if isinstance(other, np.ndarray) and other.ndim != 1:
|
|
860
|
+
raise ValueError(
|
|
861
|
+
"Cannot call squared_distance with %d-dimensional array" % other.ndim
|
|
862
|
+
)
|
|
863
|
+
if isinstance(other, DenseVector):
|
|
864
|
+
other = other.array
|
|
865
|
+
sparse_ind = np.zeros(other.size, dtype=bool)
|
|
866
|
+
sparse_ind[self.indices] = True
|
|
867
|
+
dist = other[sparse_ind] - self.values
|
|
868
|
+
result = np.dot(dist, dist)
|
|
869
|
+
|
|
870
|
+
other_ind = other[~sparse_ind]
|
|
871
|
+
result += np.dot(other_ind, other_ind)
|
|
872
|
+
return result
|
|
873
|
+
|
|
874
|
+
elif isinstance(other, SparseVector):
|
|
875
|
+
result = 0.0
|
|
876
|
+
i, j = 0, 0
|
|
877
|
+
while i < len(self.indices) and j < len(other.indices):
|
|
878
|
+
if self.indices[i] == other.indices[j]:
|
|
879
|
+
diff = self.values[i] - other.values[j]
|
|
880
|
+
result += diff * diff
|
|
881
|
+
i += 1
|
|
882
|
+
j += 1
|
|
883
|
+
elif self.indices[i] < other.indices[j]:
|
|
884
|
+
result += self.values[i] * self.values[i]
|
|
885
|
+
i += 1
|
|
886
|
+
else:
|
|
887
|
+
result += other.values[j] * other.values[j]
|
|
888
|
+
j += 1
|
|
889
|
+
while i < len(self.indices):
|
|
890
|
+
result += self.values[i] * self.values[i]
|
|
891
|
+
i += 1
|
|
892
|
+
while j < len(other.indices):
|
|
893
|
+
result += other.values[j] * other.values[j]
|
|
894
|
+
j += 1
|
|
895
|
+
return result
|
|
896
|
+
else:
|
|
897
|
+
return self.squared_distance(_convert_to_vector(other)) # type: ignore[arg-type]
|
|
898
|
+
|
|
899
|
+
def toArray(self) -> np.ndarray:
|
|
900
|
+
"""
|
|
901
|
+
Returns a copy of this SparseVector as a 1-dimensional NumPy array.
|
|
902
|
+
"""
|
|
903
|
+
arr = np.zeros((self.size,), dtype=np.float64)
|
|
904
|
+
arr[self.indices] = self.values
|
|
905
|
+
return arr
|
|
906
|
+
|
|
907
|
+
def asML(self) -> newlinalg.SparseVector:
|
|
908
|
+
"""
|
|
909
|
+
Convert this vector to the new mllib-local representation.
|
|
910
|
+
This does NOT copy the data; it copies references.
|
|
911
|
+
|
|
912
|
+
.. versionadded:: 2.0.0
|
|
913
|
+
|
|
914
|
+
Returns
|
|
915
|
+
-------
|
|
916
|
+
:py:class:`pyspark.ml.linalg.SparseVector`
|
|
917
|
+
"""
|
|
918
|
+
return newlinalg.SparseVector(self.size, self.indices, self.values)
|
|
919
|
+
|
|
920
|
+
def __len__(self) -> int:
|
|
921
|
+
return self.size
|
|
922
|
+
|
|
923
|
+
def __str__(self) -> str:
|
|
924
|
+
inds = "[" + ",".join([str(i) for i in self.indices]) + "]"
|
|
925
|
+
vals = "[" + ",".join([str(v) for v in self.values]) + "]"
|
|
926
|
+
return "(" + ",".join((str(self.size), inds, vals)) + ")"
|
|
927
|
+
|
|
928
|
+
def __repr__(self) -> str:
|
|
929
|
+
inds = self.indices
|
|
930
|
+
vals = self.values
|
|
931
|
+
entries = ", ".join(
|
|
932
|
+
["{0}: {1}".format(inds[i], _format_float(vals[i])) for i in range(len(inds))]
|
|
933
|
+
)
|
|
934
|
+
return "SparseVector({0}, {{{1}}})".format(self.size, entries)
|
|
935
|
+
|
|
936
|
+
def __eq__(self, other: Any) -> bool:
|
|
937
|
+
if isinstance(other, SparseVector):
|
|
938
|
+
return (
|
|
939
|
+
other.size == self.size
|
|
940
|
+
and np.array_equal(other.indices, self.indices)
|
|
941
|
+
and np.array_equal(other.values, self.values)
|
|
942
|
+
)
|
|
943
|
+
elif isinstance(other, DenseVector):
|
|
944
|
+
if self.size != len(other):
|
|
945
|
+
return False
|
|
946
|
+
return Vectors._equals(self.indices, self.values, list(range(len(other))), other.array)
|
|
947
|
+
return False
|
|
948
|
+
|
|
949
|
+
def __getitem__(self, index: int) -> np.float64:
|
|
950
|
+
inds = self.indices
|
|
951
|
+
vals = self.values
|
|
952
|
+
if not isinstance(index, int):
|
|
953
|
+
raise TypeError("Indices must be of type integer, got type %s" % type(index))
|
|
954
|
+
|
|
955
|
+
if index >= self.size or index < -self.size:
|
|
956
|
+
raise IndexError("Index %d out of bounds." % index)
|
|
957
|
+
if index < 0:
|
|
958
|
+
index += self.size
|
|
959
|
+
|
|
960
|
+
if (inds.size == 0) or (index > inds.item(-1)):
|
|
961
|
+
return np.float64(0.0)
|
|
962
|
+
|
|
963
|
+
insert_index = np.searchsorted(inds, index)
|
|
964
|
+
row_ind = inds[insert_index]
|
|
965
|
+
if row_ind == index:
|
|
966
|
+
return vals[insert_index]
|
|
967
|
+
return np.float64(0.0)
|
|
968
|
+
|
|
969
|
+
def __ne__(self, other: Any) -> bool:
|
|
970
|
+
return not self.__eq__(other)
|
|
971
|
+
|
|
972
|
+
def __hash__(self) -> int:
|
|
973
|
+
result = 31 + self.size
|
|
974
|
+
nnz = 0
|
|
975
|
+
i = 0
|
|
976
|
+
while i < len(self.values) and nnz < 128:
|
|
977
|
+
if self.values[i] != 0:
|
|
978
|
+
result = 31 * result + int(self.indices[i])
|
|
979
|
+
bits = _double_to_long_bits(self.values[i])
|
|
980
|
+
result = 31 * result + (bits ^ (bits >> 32))
|
|
981
|
+
nnz += 1
|
|
982
|
+
i += 1
|
|
983
|
+
return result
|
|
984
|
+
|
|
985
|
+
|
|
986
|
+
class Vectors:
|
|
987
|
+
|
|
988
|
+
"""
|
|
989
|
+
Factory methods for working with vectors.
|
|
990
|
+
|
|
991
|
+
Notes
|
|
992
|
+
-----
|
|
993
|
+
Dense vectors are simply represented as NumPy array objects,
|
|
994
|
+
so there is no need to convert them for use in MLlib. For sparse vectors,
|
|
995
|
+
the factory methods in this class create an MLlib-compatible type, or users
|
|
996
|
+
can pass in SciPy's `scipy.sparse` column vectors.
|
|
997
|
+
"""
|
|
998
|
+
|
|
999
|
+
@staticmethod
|
|
1000
|
+
@overload
|
|
1001
|
+
def sparse(size: int, __indices: bytes, __values: bytes) -> SparseVector:
|
|
1002
|
+
...
|
|
1003
|
+
|
|
1004
|
+
@staticmethod
|
|
1005
|
+
@overload
|
|
1006
|
+
def sparse(size: int, *args: Tuple[int, float]) -> SparseVector:
|
|
1007
|
+
...
|
|
1008
|
+
|
|
1009
|
+
@staticmethod
|
|
1010
|
+
@overload
|
|
1011
|
+
def sparse(size: int, __indices: Iterable[int], __values: Iterable[float]) -> SparseVector:
|
|
1012
|
+
...
|
|
1013
|
+
|
|
1014
|
+
@staticmethod
|
|
1015
|
+
@overload
|
|
1016
|
+
def sparse(size: int, __pairs: Iterable[Tuple[int, float]]) -> SparseVector:
|
|
1017
|
+
...
|
|
1018
|
+
|
|
1019
|
+
@staticmethod
|
|
1020
|
+
@overload
|
|
1021
|
+
def sparse(size: int, __map: Dict[int, float]) -> SparseVector:
|
|
1022
|
+
...
|
|
1023
|
+
|
|
1024
|
+
@staticmethod
|
|
1025
|
+
def sparse(
|
|
1026
|
+
size: int,
|
|
1027
|
+
*args: Union[
|
|
1028
|
+
bytes, Tuple[int, float], Iterable[float], Iterable[Tuple[int, float]], Dict[int, float]
|
|
1029
|
+
],
|
|
1030
|
+
) -> SparseVector:
|
|
1031
|
+
"""
|
|
1032
|
+
Create a sparse vector, using either a dictionary, a list of
|
|
1033
|
+
(index, value) pairs, or two separate arrays of indices and
|
|
1034
|
+
values (sorted by index).
|
|
1035
|
+
|
|
1036
|
+
Parameters
|
|
1037
|
+
----------
|
|
1038
|
+
size : int
|
|
1039
|
+
Size of the vector.
|
|
1040
|
+
args
|
|
1041
|
+
Non-zero entries, as a dictionary, list of tuples,
|
|
1042
|
+
or two sorted lists containing indices and values.
|
|
1043
|
+
|
|
1044
|
+
Examples
|
|
1045
|
+
--------
|
|
1046
|
+
>>> Vectors.sparse(4, {1: 1.0, 3: 5.5})
|
|
1047
|
+
SparseVector(4, {1: 1.0, 3: 5.5})
|
|
1048
|
+
>>> Vectors.sparse(4, [(1, 1.0), (3, 5.5)])
|
|
1049
|
+
SparseVector(4, {1: 1.0, 3: 5.5})
|
|
1050
|
+
>>> Vectors.sparse(4, [1, 3], [1.0, 5.5])
|
|
1051
|
+
SparseVector(4, {1: 1.0, 3: 5.5})
|
|
1052
|
+
"""
|
|
1053
|
+
return SparseVector(size, *args) # type: ignore[arg-type]
|
|
1054
|
+
|
|
1055
|
+
@overload
|
|
1056
|
+
@staticmethod
|
|
1057
|
+
def dense(*elements: float) -> DenseVector:
|
|
1058
|
+
...
|
|
1059
|
+
|
|
1060
|
+
@overload
|
|
1061
|
+
@staticmethod
|
|
1062
|
+
def dense(__arr: bytes) -> DenseVector:
|
|
1063
|
+
...
|
|
1064
|
+
|
|
1065
|
+
@overload
|
|
1066
|
+
@staticmethod
|
|
1067
|
+
def dense(__arr: Iterable[float]) -> DenseVector:
|
|
1068
|
+
...
|
|
1069
|
+
|
|
1070
|
+
@staticmethod
|
|
1071
|
+
def dense(*elements: Union[float, bytes, np.ndarray, Iterable[float]]) -> DenseVector:
|
|
1072
|
+
"""
|
|
1073
|
+
Create a dense vector of 64-bit floats from a Python list or numbers.
|
|
1074
|
+
|
|
1075
|
+
Examples
|
|
1076
|
+
--------
|
|
1077
|
+
>>> Vectors.dense([1, 2, 3])
|
|
1078
|
+
DenseVector([1.0, 2.0, 3.0])
|
|
1079
|
+
>>> Vectors.dense(1.0, 2.0)
|
|
1080
|
+
DenseVector([1.0, 2.0])
|
|
1081
|
+
"""
|
|
1082
|
+
if len(elements) == 1 and not isinstance(elements[0], (float, int)):
|
|
1083
|
+
# it's list, numpy.array or other iterable object.
|
|
1084
|
+
elements = elements[0] # type: ignore[assignment]
|
|
1085
|
+
return DenseVector(cast(Iterable[float], elements))
|
|
1086
|
+
|
|
1087
|
+
@staticmethod
|
|
1088
|
+
def fromML(vec: newlinalg.DenseVector) -> DenseVector:
|
|
1089
|
+
"""
|
|
1090
|
+
Convert a vector from the new mllib-local representation.
|
|
1091
|
+
This does NOT copy the data; it copies references.
|
|
1092
|
+
|
|
1093
|
+
.. versionadded:: 2.0.0
|
|
1094
|
+
|
|
1095
|
+
Parameters
|
|
1096
|
+
----------
|
|
1097
|
+
vec : :py:class:`pyspark.ml.linalg.Vector`
|
|
1098
|
+
|
|
1099
|
+
Returns
|
|
1100
|
+
-------
|
|
1101
|
+
:py:class:`pyspark.mllib.linalg.Vector`
|
|
1102
|
+
"""
|
|
1103
|
+
if isinstance(vec, newlinalg.DenseVector):
|
|
1104
|
+
return DenseVector(vec.array)
|
|
1105
|
+
elif isinstance(vec, newlinalg.SparseVector):
|
|
1106
|
+
return SparseVector(vec.size, vec.indices, vec.values)
|
|
1107
|
+
else:
|
|
1108
|
+
raise TypeError("Unsupported vector type %s" % type(vec))
|
|
1109
|
+
|
|
1110
|
+
@staticmethod
|
|
1111
|
+
def stringify(vector: Vector) -> str:
|
|
1112
|
+
"""
|
|
1113
|
+
Converts a vector into a string, which can be recognized by
|
|
1114
|
+
Vectors.parse().
|
|
1115
|
+
|
|
1116
|
+
Examples
|
|
1117
|
+
--------
|
|
1118
|
+
>>> Vectors.stringify(Vectors.sparse(2, [1], [1.0]))
|
|
1119
|
+
'(2,[1],[1.0])'
|
|
1120
|
+
>>> Vectors.stringify(Vectors.dense([0.0, 1.0]))
|
|
1121
|
+
'[0.0,1.0]'
|
|
1122
|
+
"""
|
|
1123
|
+
return str(vector)
|
|
1124
|
+
|
|
1125
|
+
@staticmethod
|
|
1126
|
+
def squared_distance(v1: Vector, v2: Vector) -> np.float64:
|
|
1127
|
+
"""
|
|
1128
|
+
Squared distance between two vectors.
|
|
1129
|
+
a and b can be of type SparseVector, DenseVector, np.ndarray
|
|
1130
|
+
or array.array.
|
|
1131
|
+
|
|
1132
|
+
Examples
|
|
1133
|
+
--------
|
|
1134
|
+
>>> a = Vectors.sparse(4, [(0, 1), (3, 4)])
|
|
1135
|
+
>>> b = Vectors.dense([2, 5, 4, 1])
|
|
1136
|
+
>>> a.squared_distance(b)
|
|
1137
|
+
51.0
|
|
1138
|
+
"""
|
|
1139
|
+
v1, v2 = _convert_to_vector(v1), _convert_to_vector(v2)
|
|
1140
|
+
return v1.squared_distance(v2) # type: ignore[attr-defined]
|
|
1141
|
+
|
|
1142
|
+
@staticmethod
|
|
1143
|
+
def norm(vector: Vector, p: "NormType") -> np.float64:
|
|
1144
|
+
"""
|
|
1145
|
+
Find norm of the given vector.
|
|
1146
|
+
"""
|
|
1147
|
+
return _convert_to_vector(vector).norm(p) # type: ignore[attr-defined]
|
|
1148
|
+
|
|
1149
|
+
@staticmethod
|
|
1150
|
+
def parse(s: str) -> Vector:
|
|
1151
|
+
"""Parse a string representation back into the Vector.
|
|
1152
|
+
|
|
1153
|
+
Examples
|
|
1154
|
+
--------
|
|
1155
|
+
>>> Vectors.parse('[2,1,2 ]')
|
|
1156
|
+
DenseVector([2.0, 1.0, 2.0])
|
|
1157
|
+
>>> Vectors.parse(' ( 100, [0], [2])')
|
|
1158
|
+
SparseVector(100, {0: 2.0})
|
|
1159
|
+
"""
|
|
1160
|
+
if s.find("(") == -1 and s.find("[") != -1:
|
|
1161
|
+
return DenseVector.parse(s)
|
|
1162
|
+
elif s.find("(") != -1:
|
|
1163
|
+
return SparseVector.parse(s)
|
|
1164
|
+
else:
|
|
1165
|
+
raise ValueError("Cannot find tokens '[' or '(' from the input string.")
|
|
1166
|
+
|
|
1167
|
+
@staticmethod
|
|
1168
|
+
def zeros(size: int) -> DenseVector:
|
|
1169
|
+
return DenseVector(np.zeros(size))
|
|
1170
|
+
|
|
1171
|
+
@staticmethod
|
|
1172
|
+
def _equals(
|
|
1173
|
+
v1_indices: Union[Sequence[int], np.ndarray],
|
|
1174
|
+
v1_values: Union[Sequence[float], np.ndarray],
|
|
1175
|
+
v2_indices: Union[Sequence[int], np.ndarray],
|
|
1176
|
+
v2_values: Union[Sequence[float], np.ndarray],
|
|
1177
|
+
) -> bool:
|
|
1178
|
+
"""
|
|
1179
|
+
Check equality between sparse/dense vectors,
|
|
1180
|
+
v1_indices and v2_indices assume to be strictly increasing.
|
|
1181
|
+
"""
|
|
1182
|
+
v1_size = len(v1_values)
|
|
1183
|
+
v2_size = len(v2_values)
|
|
1184
|
+
k1 = 0
|
|
1185
|
+
k2 = 0
|
|
1186
|
+
all_equal = True
|
|
1187
|
+
while all_equal:
|
|
1188
|
+
while k1 < v1_size and v1_values[k1] == 0:
|
|
1189
|
+
k1 += 1
|
|
1190
|
+
while k2 < v2_size and v2_values[k2] == 0:
|
|
1191
|
+
k2 += 1
|
|
1192
|
+
|
|
1193
|
+
if k1 >= v1_size or k2 >= v2_size:
|
|
1194
|
+
return k1 >= v1_size and k2 >= v2_size
|
|
1195
|
+
|
|
1196
|
+
all_equal = v1_indices[k1] == v2_indices[k2] and v1_values[k1] == v2_values[k2]
|
|
1197
|
+
k1 += 1
|
|
1198
|
+
k2 += 1
|
|
1199
|
+
return all_equal
|
|
1200
|
+
|
|
1201
|
+
|
|
1202
|
+
class Matrix:
|
|
1203
|
+
|
|
1204
|
+
__UDT__ = MatrixUDT()
|
|
1205
|
+
|
|
1206
|
+
"""
|
|
1207
|
+
Represents a local matrix.
|
|
1208
|
+
"""
|
|
1209
|
+
|
|
1210
|
+
def __init__(self, numRows: int, numCols: int, isTransposed: bool = False) -> None:
|
|
1211
|
+
self.numRows = numRows
|
|
1212
|
+
self.numCols = numCols
|
|
1213
|
+
self.isTransposed = isTransposed
|
|
1214
|
+
|
|
1215
|
+
def toArray(self) -> np.ndarray:
|
|
1216
|
+
"""
|
|
1217
|
+
Returns its elements in a NumPy ndarray.
|
|
1218
|
+
"""
|
|
1219
|
+
raise NotImplementedError
|
|
1220
|
+
|
|
1221
|
+
def asML(self) -> newlinalg.Matrix:
|
|
1222
|
+
"""
|
|
1223
|
+
Convert this matrix to the new mllib-local representation.
|
|
1224
|
+
This does NOT copy the data; it copies references.
|
|
1225
|
+
"""
|
|
1226
|
+
raise NotImplementedError
|
|
1227
|
+
|
|
1228
|
+
@staticmethod
|
|
1229
|
+
def _convert_to_array(array_like: Union[bytes, Iterable[float]], dtype: Any) -> np.ndarray:
|
|
1230
|
+
"""
|
|
1231
|
+
Convert Matrix attributes which are array-like or buffer to array.
|
|
1232
|
+
"""
|
|
1233
|
+
if isinstance(array_like, bytes):
|
|
1234
|
+
return np.frombuffer(array_like, dtype=dtype)
|
|
1235
|
+
return np.asarray(array_like, dtype=dtype)
|
|
1236
|
+
|
|
1237
|
+
|
|
1238
|
+
class DenseMatrix(Matrix):
|
|
1239
|
+
"""
|
|
1240
|
+
Column-major dense matrix.
|
|
1241
|
+
"""
|
|
1242
|
+
|
|
1243
|
+
def __init__(
|
|
1244
|
+
self,
|
|
1245
|
+
numRows: int,
|
|
1246
|
+
numCols: int,
|
|
1247
|
+
values: Union[bytes, Iterable[float]],
|
|
1248
|
+
isTransposed: bool = False,
|
|
1249
|
+
):
|
|
1250
|
+
Matrix.__init__(self, numRows, numCols, isTransposed)
|
|
1251
|
+
values = self._convert_to_array(values, np.float64)
|
|
1252
|
+
assert len(values) == numRows * numCols
|
|
1253
|
+
self.values = values
|
|
1254
|
+
|
|
1255
|
+
def __reduce__(self) -> Tuple[Type["DenseMatrix"], Tuple[int, int, bytes, int]]:
|
|
1256
|
+
return DenseMatrix, (
|
|
1257
|
+
self.numRows,
|
|
1258
|
+
self.numCols,
|
|
1259
|
+
self.values.tobytes(),
|
|
1260
|
+
int(self.isTransposed),
|
|
1261
|
+
)
|
|
1262
|
+
|
|
1263
|
+
def __str__(self) -> str:
|
|
1264
|
+
"""
|
|
1265
|
+
Pretty printing of a DenseMatrix
|
|
1266
|
+
|
|
1267
|
+
Examples
|
|
1268
|
+
--------
|
|
1269
|
+
>>> dm = DenseMatrix(2, 2, range(4))
|
|
1270
|
+
>>> print(dm)
|
|
1271
|
+
DenseMatrix([[ 0., 2.],
|
|
1272
|
+
[ 1., 3.]])
|
|
1273
|
+
>>> dm = DenseMatrix(2, 2, range(4), isTransposed=True)
|
|
1274
|
+
>>> print(dm)
|
|
1275
|
+
DenseMatrix([[ 0., 1.],
|
|
1276
|
+
[ 2., 3.]])
|
|
1277
|
+
"""
|
|
1278
|
+
# Inspired by __repr__ in scipy matrices.
|
|
1279
|
+
array_lines = repr(self.toArray()).splitlines()
|
|
1280
|
+
|
|
1281
|
+
# We need to adjust six spaces which is the difference in number
|
|
1282
|
+
# of letters between "DenseMatrix" and "array"
|
|
1283
|
+
x = "\n".join([(" " * 6 + line) for line in array_lines[1:]])
|
|
1284
|
+
return array_lines[0].replace("array", "DenseMatrix") + "\n" + x
|
|
1285
|
+
|
|
1286
|
+
def __repr__(self) -> str:
|
|
1287
|
+
"""
|
|
1288
|
+
Representation of a DenseMatrix
|
|
1289
|
+
|
|
1290
|
+
Examples
|
|
1291
|
+
--------
|
|
1292
|
+
>>> dm = DenseMatrix(2, 2, range(4))
|
|
1293
|
+
>>> dm
|
|
1294
|
+
DenseMatrix(2, 2, [0.0, 1.0, 2.0, 3.0], False)
|
|
1295
|
+
"""
|
|
1296
|
+
# If the number of values are less than seventeen then return as it is.
|
|
1297
|
+
# Else return first eight values and last eight values.
|
|
1298
|
+
if len(self.values) < 17:
|
|
1299
|
+
entries = _format_float_list(self.values)
|
|
1300
|
+
else:
|
|
1301
|
+
entries = (
|
|
1302
|
+
_format_float_list(self.values[:8]) + ["..."] + _format_float_list(self.values[-8:])
|
|
1303
|
+
)
|
|
1304
|
+
|
|
1305
|
+
return "DenseMatrix({0}, {1}, [{2}], {3})".format(
|
|
1306
|
+
self.numRows, self.numCols, ", ".join(entries), self.isTransposed
|
|
1307
|
+
)
|
|
1308
|
+
|
|
1309
|
+
def toArray(self) -> np.ndarray:
|
|
1310
|
+
"""
|
|
1311
|
+
Return an numpy.ndarray
|
|
1312
|
+
|
|
1313
|
+
Examples
|
|
1314
|
+
--------
|
|
1315
|
+
>>> m = DenseMatrix(2, 2, range(4))
|
|
1316
|
+
>>> m.toArray()
|
|
1317
|
+
array([[ 0., 2.],
|
|
1318
|
+
[ 1., 3.]])
|
|
1319
|
+
"""
|
|
1320
|
+
if self.isTransposed:
|
|
1321
|
+
return np.asfortranarray(self.values.reshape((self.numRows, self.numCols)))
|
|
1322
|
+
else:
|
|
1323
|
+
return self.values.reshape((self.numRows, self.numCols), order="F")
|
|
1324
|
+
|
|
1325
|
+
def toSparse(self) -> "SparseMatrix":
|
|
1326
|
+
"""Convert to SparseMatrix"""
|
|
1327
|
+
if self.isTransposed:
|
|
1328
|
+
values = np.ravel(self.toArray(), order="F")
|
|
1329
|
+
else:
|
|
1330
|
+
values = self.values
|
|
1331
|
+
indices = np.nonzero(values)[0]
|
|
1332
|
+
colCounts = np.bincount(indices // self.numRows)
|
|
1333
|
+
colPtrs = np.cumsum(np.hstack((0, colCounts, np.zeros(self.numCols - colCounts.size))))
|
|
1334
|
+
values = values[indices]
|
|
1335
|
+
rowIndices = indices % self.numRows
|
|
1336
|
+
|
|
1337
|
+
return SparseMatrix(self.numRows, self.numCols, colPtrs, rowIndices, values)
|
|
1338
|
+
|
|
1339
|
+
def asML(self) -> newlinalg.DenseMatrix:
|
|
1340
|
+
"""
|
|
1341
|
+
Convert this matrix to the new mllib-local representation.
|
|
1342
|
+
This does NOT copy the data; it copies references.
|
|
1343
|
+
|
|
1344
|
+
.. versionadded:: 2.0.0
|
|
1345
|
+
|
|
1346
|
+
Returns
|
|
1347
|
+
-------
|
|
1348
|
+
:py:class:`pyspark.ml.linalg.DenseMatrix`
|
|
1349
|
+
"""
|
|
1350
|
+
return newlinalg.DenseMatrix(self.numRows, self.numCols, self.values, self.isTransposed)
|
|
1351
|
+
|
|
1352
|
+
def __getitem__(self, indices: Tuple[int, int]) -> np.float64:
|
|
1353
|
+
i, j = indices
|
|
1354
|
+
if i < 0 or i >= self.numRows:
|
|
1355
|
+
raise IndexError("Row index %d is out of range [0, %d)" % (i, self.numRows))
|
|
1356
|
+
if j >= self.numCols or j < 0:
|
|
1357
|
+
raise IndexError("Column index %d is out of range [0, %d)" % (j, self.numCols))
|
|
1358
|
+
|
|
1359
|
+
if self.isTransposed:
|
|
1360
|
+
return self.values[i * self.numCols + j]
|
|
1361
|
+
else:
|
|
1362
|
+
return self.values[i + j * self.numRows]
|
|
1363
|
+
|
|
1364
|
+
def __eq__(self, other: Any) -> bool:
|
|
1365
|
+
if self.numRows != other.numRows or self.numCols != other.numCols:
|
|
1366
|
+
return False
|
|
1367
|
+
if isinstance(other, SparseMatrix):
|
|
1368
|
+
return np.all(self.toArray() == other.toArray()).tolist()
|
|
1369
|
+
|
|
1370
|
+
self_values = np.ravel(self.toArray(), order="F")
|
|
1371
|
+
other_values = np.ravel(other.toArray(), order="F")
|
|
1372
|
+
return np.all(self_values == other_values).tolist()
|
|
1373
|
+
|
|
1374
|
+
|
|
1375
|
+
class SparseMatrix(Matrix):
|
|
1376
|
+
"""Sparse Matrix stored in CSC format."""
|
|
1377
|
+
|
|
1378
|
+
def __init__(
|
|
1379
|
+
self,
|
|
1380
|
+
numRows: int,
|
|
1381
|
+
numCols: int,
|
|
1382
|
+
colPtrs: Union[bytes, Iterable[int]],
|
|
1383
|
+
rowIndices: Union[bytes, Iterable[int]],
|
|
1384
|
+
values: Union[bytes, Iterable[float]],
|
|
1385
|
+
isTransposed: bool = False,
|
|
1386
|
+
) -> None:
|
|
1387
|
+
Matrix.__init__(self, numRows, numCols, isTransposed)
|
|
1388
|
+
self.colPtrs = self._convert_to_array(colPtrs, np.int32)
|
|
1389
|
+
self.rowIndices = self._convert_to_array(rowIndices, np.int32)
|
|
1390
|
+
self.values = self._convert_to_array(values, np.float64)
|
|
1391
|
+
|
|
1392
|
+
if self.isTransposed:
|
|
1393
|
+
if self.colPtrs.size != numRows + 1:
|
|
1394
|
+
raise ValueError(
|
|
1395
|
+
"Expected colPtrs of size %d, got %d." % (numRows + 1, self.colPtrs.size)
|
|
1396
|
+
)
|
|
1397
|
+
else:
|
|
1398
|
+
if self.colPtrs.size != numCols + 1:
|
|
1399
|
+
raise ValueError(
|
|
1400
|
+
"Expected colPtrs of size %d, got %d." % (numCols + 1, self.colPtrs.size)
|
|
1401
|
+
)
|
|
1402
|
+
if self.rowIndices.size != self.values.size:
|
|
1403
|
+
raise ValueError(
|
|
1404
|
+
"Expected rowIndices of length %d, got %d."
|
|
1405
|
+
% (self.rowIndices.size, self.values.size)
|
|
1406
|
+
)
|
|
1407
|
+
|
|
1408
|
+
def __str__(self) -> str:
|
|
1409
|
+
"""
|
|
1410
|
+
Pretty printing of a SparseMatrix
|
|
1411
|
+
|
|
1412
|
+
Examples
|
|
1413
|
+
--------
|
|
1414
|
+
>>> sm1 = SparseMatrix(2, 2, [0, 2, 3], [0, 1, 1], [2, 3, 4])
|
|
1415
|
+
>>> print(sm1)
|
|
1416
|
+
2 X 2 CSCMatrix
|
|
1417
|
+
(0,0) 2.0
|
|
1418
|
+
(1,0) 3.0
|
|
1419
|
+
(1,1) 4.0
|
|
1420
|
+
>>> sm1 = SparseMatrix(2, 2, [0, 2, 3], [0, 1, 1], [2, 3, 4], True)
|
|
1421
|
+
>>> print(sm1)
|
|
1422
|
+
2 X 2 CSRMatrix
|
|
1423
|
+
(0,0) 2.0
|
|
1424
|
+
(0,1) 3.0
|
|
1425
|
+
(1,1) 4.0
|
|
1426
|
+
"""
|
|
1427
|
+
spstr = "{0} X {1} ".format(self.numRows, self.numCols)
|
|
1428
|
+
if self.isTransposed:
|
|
1429
|
+
spstr += "CSRMatrix\n"
|
|
1430
|
+
else:
|
|
1431
|
+
spstr += "CSCMatrix\n"
|
|
1432
|
+
|
|
1433
|
+
cur_col = 0
|
|
1434
|
+
smlist = []
|
|
1435
|
+
|
|
1436
|
+
# Display first 16 values.
|
|
1437
|
+
if len(self.values) <= 16:
|
|
1438
|
+
zipindval = zip(self.rowIndices, self.values)
|
|
1439
|
+
else:
|
|
1440
|
+
zipindval = zip(self.rowIndices[:16], self.values[:16])
|
|
1441
|
+
for i, (rowInd, value) in enumerate(zipindval):
|
|
1442
|
+
if self.colPtrs[cur_col + 1] <= i:
|
|
1443
|
+
cur_col += 1
|
|
1444
|
+
if self.isTransposed:
|
|
1445
|
+
smlist.append("({0},{1}) {2}".format(cur_col, rowInd, _format_float(value)))
|
|
1446
|
+
else:
|
|
1447
|
+
smlist.append("({0},{1}) {2}".format(rowInd, cur_col, _format_float(value)))
|
|
1448
|
+
spstr += "\n".join(smlist)
|
|
1449
|
+
|
|
1450
|
+
if len(self.values) > 16:
|
|
1451
|
+
spstr += "\n.." * 2
|
|
1452
|
+
return spstr
|
|
1453
|
+
|
|
1454
|
+
def __repr__(self) -> str:
|
|
1455
|
+
"""
|
|
1456
|
+
Representation of a SparseMatrix
|
|
1457
|
+
|
|
1458
|
+
Examples
|
|
1459
|
+
--------
|
|
1460
|
+
>>> sm1 = SparseMatrix(2, 2, [0, 2, 3], [0, 1, 1], [2, 3, 4])
|
|
1461
|
+
>>> sm1
|
|
1462
|
+
SparseMatrix(2, 2, [0, 2, 3], [0, 1, 1], [2.0, 3.0, 4.0], False)
|
|
1463
|
+
"""
|
|
1464
|
+
rowIndices = list(self.rowIndices)
|
|
1465
|
+
colPtrs = list(self.colPtrs)
|
|
1466
|
+
|
|
1467
|
+
if len(self.values) <= 16:
|
|
1468
|
+
values = _format_float_list(self.values)
|
|
1469
|
+
|
|
1470
|
+
else:
|
|
1471
|
+
values = (
|
|
1472
|
+
_format_float_list(self.values[:8]) + ["..."] + _format_float_list(self.values[-8:])
|
|
1473
|
+
)
|
|
1474
|
+
rowIndices = rowIndices[:8] + ["..."] + rowIndices[-8:]
|
|
1475
|
+
|
|
1476
|
+
if len(self.colPtrs) > 16:
|
|
1477
|
+
colPtrs = colPtrs[:8] + ["..."] + colPtrs[-8:]
|
|
1478
|
+
|
|
1479
|
+
return "SparseMatrix({0}, {1}, [{2}], [{3}], [{4}], {5})".format(
|
|
1480
|
+
self.numRows,
|
|
1481
|
+
self.numCols,
|
|
1482
|
+
", ".join([str(ptr) for ptr in colPtrs]),
|
|
1483
|
+
", ".join([str(ind) for ind in rowIndices]),
|
|
1484
|
+
", ".join(values),
|
|
1485
|
+
self.isTransposed,
|
|
1486
|
+
)
|
|
1487
|
+
|
|
1488
|
+
def __reduce__(self) -> Tuple[Type["SparseMatrix"], Tuple[int, int, bytes, bytes, bytes, int]]:
|
|
1489
|
+
return SparseMatrix, (
|
|
1490
|
+
self.numRows,
|
|
1491
|
+
self.numCols,
|
|
1492
|
+
self.colPtrs.tobytes(),
|
|
1493
|
+
self.rowIndices.tobytes(),
|
|
1494
|
+
self.values.tobytes(),
|
|
1495
|
+
int(self.isTransposed),
|
|
1496
|
+
)
|
|
1497
|
+
|
|
1498
|
+
def __getitem__(self, indices: Tuple[int, int]) -> np.float64:
|
|
1499
|
+
i, j = indices
|
|
1500
|
+
if i < 0 or i >= self.numRows:
|
|
1501
|
+
raise IndexError("Row index %d is out of range [0, %d)" % (i, self.numRows))
|
|
1502
|
+
if j < 0 or j >= self.numCols:
|
|
1503
|
+
raise IndexError("Column index %d is out of range [0, %d)" % (j, self.numCols))
|
|
1504
|
+
|
|
1505
|
+
# If a CSR matrix is given, then the row index should be searched
|
|
1506
|
+
# for in ColPtrs, and the column index should be searched for in the
|
|
1507
|
+
# corresponding slice obtained from rowIndices.
|
|
1508
|
+
if self.isTransposed:
|
|
1509
|
+
j, i = i, j
|
|
1510
|
+
|
|
1511
|
+
colStart = self.colPtrs[j]
|
|
1512
|
+
colEnd = self.colPtrs[j + 1]
|
|
1513
|
+
nz = self.rowIndices[colStart:colEnd]
|
|
1514
|
+
ind = np.searchsorted(nz, i) + colStart
|
|
1515
|
+
if ind < colEnd and self.rowIndices[ind] == i:
|
|
1516
|
+
return self.values[ind]
|
|
1517
|
+
else:
|
|
1518
|
+
return np.float64(0.0)
|
|
1519
|
+
|
|
1520
|
+
def toArray(self) -> np.ndarray:
|
|
1521
|
+
"""
|
|
1522
|
+
Return an numpy.ndarray
|
|
1523
|
+
"""
|
|
1524
|
+
A = np.zeros((self.numRows, self.numCols), dtype=np.float64, order="F")
|
|
1525
|
+
for k in range(self.colPtrs.size - 1):
|
|
1526
|
+
startptr = self.colPtrs[k]
|
|
1527
|
+
endptr = self.colPtrs[k + 1]
|
|
1528
|
+
if self.isTransposed:
|
|
1529
|
+
A[k, self.rowIndices[startptr:endptr]] = self.values[startptr:endptr]
|
|
1530
|
+
else:
|
|
1531
|
+
A[self.rowIndices[startptr:endptr], k] = self.values[startptr:endptr]
|
|
1532
|
+
return A
|
|
1533
|
+
|
|
1534
|
+
def toDense(self) -> "DenseMatrix":
|
|
1535
|
+
densevals = np.ravel(self.toArray(), order="F")
|
|
1536
|
+
return DenseMatrix(self.numRows, self.numCols, densevals)
|
|
1537
|
+
|
|
1538
|
+
def asML(self) -> newlinalg.SparseMatrix:
|
|
1539
|
+
"""
|
|
1540
|
+
Convert this matrix to the new mllib-local representation.
|
|
1541
|
+
This does NOT copy the data; it copies references.
|
|
1542
|
+
|
|
1543
|
+
.. versionadded:: 2.0.0
|
|
1544
|
+
|
|
1545
|
+
Returns
|
|
1546
|
+
-------
|
|
1547
|
+
:py:class:`pyspark.ml.linalg.SparseMatrix`
|
|
1548
|
+
"""
|
|
1549
|
+
return newlinalg.SparseMatrix(
|
|
1550
|
+
self.numRows,
|
|
1551
|
+
self.numCols,
|
|
1552
|
+
self.colPtrs,
|
|
1553
|
+
self.rowIndices,
|
|
1554
|
+
self.values,
|
|
1555
|
+
self.isTransposed,
|
|
1556
|
+
)
|
|
1557
|
+
|
|
1558
|
+
# TODO: More efficient implementation:
|
|
1559
|
+
def __eq__(self, other: Any) -> bool:
|
|
1560
|
+
assert isinstance(other, Matrix)
|
|
1561
|
+
return np.all(self.toArray() == other.toArray()).tolist()
|
|
1562
|
+
|
|
1563
|
+
|
|
1564
|
+
class Matrices:
|
|
1565
|
+
@staticmethod
|
|
1566
|
+
def dense(numRows: int, numCols: int, values: Union[bytes, Iterable[float]]) -> DenseMatrix:
|
|
1567
|
+
"""
|
|
1568
|
+
Create a DenseMatrix
|
|
1569
|
+
"""
|
|
1570
|
+
return DenseMatrix(numRows, numCols, values)
|
|
1571
|
+
|
|
1572
|
+
@staticmethod
|
|
1573
|
+
def sparse(
|
|
1574
|
+
numRows: int,
|
|
1575
|
+
numCols: int,
|
|
1576
|
+
colPtrs: Union[bytes, Iterable[int]],
|
|
1577
|
+
rowIndices: Union[bytes, Iterable[int]],
|
|
1578
|
+
values: Union[bytes, Iterable[float]],
|
|
1579
|
+
) -> SparseMatrix:
|
|
1580
|
+
"""
|
|
1581
|
+
Create a SparseMatrix
|
|
1582
|
+
"""
|
|
1583
|
+
return SparseMatrix(numRows, numCols, colPtrs, rowIndices, values)
|
|
1584
|
+
|
|
1585
|
+
@staticmethod
|
|
1586
|
+
def fromML(mat: newlinalg.Matrix) -> Matrix:
|
|
1587
|
+
"""
|
|
1588
|
+
Convert a matrix from the new mllib-local representation.
|
|
1589
|
+
This does NOT copy the data; it copies references.
|
|
1590
|
+
|
|
1591
|
+
.. versionadded:: 2.0.0
|
|
1592
|
+
|
|
1593
|
+
Parameters
|
|
1594
|
+
----------
|
|
1595
|
+
mat : :py:class:`pyspark.ml.linalg.Matrix`
|
|
1596
|
+
|
|
1597
|
+
Returns
|
|
1598
|
+
-------
|
|
1599
|
+
:py:class:`pyspark.mllib.linalg.Matrix`
|
|
1600
|
+
"""
|
|
1601
|
+
if isinstance(mat, newlinalg.DenseMatrix):
|
|
1602
|
+
return DenseMatrix(mat.numRows, mat.numCols, mat.values, mat.isTransposed)
|
|
1603
|
+
elif isinstance(mat, newlinalg.SparseMatrix):
|
|
1604
|
+
return SparseMatrix(
|
|
1605
|
+
mat.numRows, mat.numCols, mat.colPtrs, mat.rowIndices, mat.values, mat.isTransposed
|
|
1606
|
+
)
|
|
1607
|
+
else:
|
|
1608
|
+
raise TypeError("Unsupported matrix type %s" % type(mat))
|
|
1609
|
+
|
|
1610
|
+
|
|
1611
|
+
class QRDecomposition(Generic[QT, RT]):
|
|
1612
|
+
"""
|
|
1613
|
+
Represents QR factors.
|
|
1614
|
+
"""
|
|
1615
|
+
|
|
1616
|
+
def __init__(self, Q: QT, R: RT) -> None:
|
|
1617
|
+
self._Q = Q
|
|
1618
|
+
self._R = R
|
|
1619
|
+
|
|
1620
|
+
@property
|
|
1621
|
+
@since("2.0.0")
|
|
1622
|
+
def Q(self) -> QT:
|
|
1623
|
+
"""
|
|
1624
|
+
An orthogonal matrix Q in a QR decomposition.
|
|
1625
|
+
May be null if not computed.
|
|
1626
|
+
"""
|
|
1627
|
+
return self._Q
|
|
1628
|
+
|
|
1629
|
+
@property
|
|
1630
|
+
@since("2.0.0")
|
|
1631
|
+
def R(self) -> RT:
|
|
1632
|
+
"""
|
|
1633
|
+
An upper triangular matrix R in a QR decomposition.
|
|
1634
|
+
"""
|
|
1635
|
+
return self._R
|
|
1636
|
+
|
|
1637
|
+
|
|
1638
|
+
def _test() -> None:
|
|
1639
|
+
import doctest
|
|
1640
|
+
import numpy
|
|
1641
|
+
|
|
1642
|
+
try:
|
|
1643
|
+
# Numpy 1.14+ changed it's string format.
|
|
1644
|
+
numpy.set_printoptions(legacy="1.13")
|
|
1645
|
+
except TypeError:
|
|
1646
|
+
pass
|
|
1647
|
+
(failure_count, test_count) = doctest.testmod(optionflags=doctest.ELLIPSIS)
|
|
1648
|
+
if failure_count:
|
|
1649
|
+
sys.exit(-1)
|
|
1650
|
+
|
|
1651
|
+
|
|
1652
|
+
if __name__ == "__main__":
|
|
1653
|
+
_test()
|