sequenzo 0.1.18__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h

@@ -1,1518 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2008-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_SPARSEMATRIX_H
-#define EIGEN_SPARSEMATRIX_H
-
-namespace Eigen { 
-
-/** \ingroup SparseCore_Module
-  *
-  * \class SparseMatrix
-  *
-  * \brief A versatible sparse matrix representation
-  *
-  * This class implements a more versatile variants of the common \em compressed row/column storage format.
-  * Each colmun's (resp. row) non zeros are stored as a pair of value with associated row (resp. colmiun) index.
-  * All the non zeros are stored in a single large buffer. Unlike the \em compressed format, there might be extra
-  * space in between the nonzeros of two successive colmuns (resp. rows) such that insertion of new non-zero
-  * can be done with limited memory reallocation and copies.
-  *
-  * A call to the function makeCompressed() turns the matrix into the standard \em compressed format
-  * compatible with many library.
-  *
-  * More details on this storage sceheme are given in the \ref TutorialSparse "manual pages".
-  *
-  * \tparam _Scalar the scalar type, i.e. the type of the coefficients
-  * \tparam _Options Union of bit flags controlling the storage scheme. Currently the only possibility
-  *                 is ColMajor or RowMajor. The default is 0 which means column-major.
-  * \tparam _StorageIndex the type of the indices. It has to be a \b signed type (e.g., short, int, std::ptrdiff_t). Default is \c int.
-  *
-  * \warning In %Eigen 3.2, the undocumented type \c SparseMatrix::Index was improperly defined as the storage index type (e.g., int),
-  *          whereas it is now (starting from %Eigen 3.3) deprecated and always defined as Eigen::Index.
-  *          Codes making use of \c SparseMatrix::Index, might thus likely have to be changed to use \c SparseMatrix::StorageIndex instead.
-  *
-  * This class can be extended with the help of the plugin mechanism described on the page
-  * \ref TopicCustomizing_Plugins by defining the preprocessor symbol \c EIGEN_SPARSEMATRIX_PLUGIN.
-  */
-
-namespace internal {
-template<typename _Scalar, int _Options, typename _StorageIndex>
-struct traits<SparseMatrix<_Scalar, _Options, _StorageIndex> >
-{
-  typedef _Scalar Scalar;
-  typedef _StorageIndex StorageIndex;
-  typedef Sparse StorageKind;
-  typedef MatrixXpr XprKind;
-  enum {
-    RowsAtCompileTime = Dynamic,
-    ColsAtCompileTime = Dynamic,
-    MaxRowsAtCompileTime = Dynamic,
-    MaxColsAtCompileTime = Dynamic,
-    Flags = _Options | NestByRefBit | LvalueBit | CompressedAccessBit,
-    SupportedAccessPatterns = InnerRandomAccessPattern
-  };
-};
-
-template<typename _Scalar, int _Options, typename _StorageIndex, int DiagIndex>
-struct traits<Diagonal<SparseMatrix<_Scalar, _Options, _StorageIndex>, DiagIndex> >
-{
-  typedef SparseMatrix<_Scalar, _Options, _StorageIndex> MatrixType;
-  typedef typename ref_selector<MatrixType>::type MatrixTypeNested;
-  typedef typename remove_reference<MatrixTypeNested>::type _MatrixTypeNested;
-
-  typedef _Scalar Scalar;
-  typedef Dense StorageKind;
-  typedef _StorageIndex StorageIndex;
-  typedef MatrixXpr XprKind;
-
-  enum {
-    RowsAtCompileTime = Dynamic,
-    ColsAtCompileTime = 1,
-    MaxRowsAtCompileTime = Dynamic,
-    MaxColsAtCompileTime = 1,
-    Flags = LvalueBit
-  };
-};
-
-template<typename _Scalar, int _Options, typename _StorageIndex, int DiagIndex>
-struct traits<Diagonal<const SparseMatrix<_Scalar, _Options, _StorageIndex>, DiagIndex> >
- : public traits<Diagonal<SparseMatrix<_Scalar, _Options, _StorageIndex>, DiagIndex> >
-{
-  enum {
-    Flags = 0
-  };
-};
-
-} // end namespace internal
-
-template<typename _Scalar, int _Options, typename _StorageIndex>
-class SparseMatrix
-  : public SparseCompressedBase<SparseMatrix<_Scalar, _Options, _StorageIndex> >
-{
-    typedef SparseCompressedBase<SparseMatrix> Base;
-    using Base::convert_index;
-    friend class SparseVector<_Scalar,0,_StorageIndex>;
-    template<typename, typename, typename, typename, typename>
-    friend struct internal::Assignment;
-  public:
-    using Base::isCompressed;
-    using Base::nonZeros;
-    EIGEN_SPARSE_PUBLIC_INTERFACE(SparseMatrix)
-    using Base::operator+=;
-    using Base::operator-=;
-
-    typedef MappedSparseMatrix<Scalar,Flags> Map;
-    typedef Diagonal<SparseMatrix> DiagonalReturnType;
-    typedef Diagonal<const SparseMatrix> ConstDiagonalReturnType;
-    typedef typename Base::InnerIterator InnerIterator;
-    typedef typename Base::ReverseInnerIterator ReverseInnerIterator;
-    
-
-    using Base::IsRowMajor;
-    typedef internal::CompressedStorage<Scalar,StorageIndex> Storage;
-    enum {
-      Options = _Options
-    };
-
-    typedef typename Base::IndexVector IndexVector;
-    typedef typename Base::ScalarVector ScalarVector;
-  protected:
-    typedef SparseMatrix<Scalar,(Flags&~RowMajorBit)|(IsRowMajor?RowMajorBit:0)> TransposedSparseMatrix;
-
-    Index m_outerSize;
-    Index m_innerSize;
-    StorageIndex* m_outerIndex;
-    StorageIndex* m_innerNonZeros;     // optional, if null then the data is compressed
-    Storage m_data;
-
-  public:
-    
-    /** \returns the number of rows of the matrix */
-    inline Index rows() const { return IsRowMajor ? m_outerSize : m_innerSize; }
-    /** \returns the number of columns of the matrix */
-    inline Index cols() const { return IsRowMajor ? m_innerSize : m_outerSize; }
-
-    /** \returns the number of rows (resp. columns) of the matrix if the storage order column major (resp. row major) */
-    inline Index innerSize() const { return m_innerSize; }
-    /** \returns the number of columns (resp. rows) of the matrix if the storage order column major (resp. row major) */
-    inline Index outerSize() const { return m_outerSize; }
-    
-    /** \returns a const pointer to the array of values.
-      * This function is aimed at interoperability with other libraries.
-      * \sa innerIndexPtr(), outerIndexPtr() */
-    inline const Scalar* valuePtr() const { return m_data.valuePtr(); }
-    /** \returns a non-const pointer to the array of values.
-      * This function is aimed at interoperability with other libraries.
-      * \sa innerIndexPtr(), outerIndexPtr() */
-    inline Scalar* valuePtr() { return m_data.valuePtr(); }
-
-    /** \returns a const pointer to the array of inner indices.
-      * This function is aimed at interoperability with other libraries.
-      * \sa valuePtr(), outerIndexPtr() */
-    inline const StorageIndex* innerIndexPtr() const { return m_data.indexPtr(); }
-    /** \returns a non-const pointer to the array of inner indices.
-      * This function is aimed at interoperability with other libraries.
-      * \sa valuePtr(), outerIndexPtr() */
-    inline StorageIndex* innerIndexPtr() { return m_data.indexPtr(); }
-
-    /** \returns a const pointer to the array of the starting positions of the inner vectors.
-      * This function is aimed at interoperability with other libraries.
-      * \sa valuePtr(), innerIndexPtr() */
-    inline const StorageIndex* outerIndexPtr() const { return m_outerIndex; }
-    /** \returns a non-const pointer to the array of the starting positions of the inner vectors.
-      * This function is aimed at interoperability with other libraries.
-      * \sa valuePtr(), innerIndexPtr() */
-    inline StorageIndex* outerIndexPtr() { return m_outerIndex; }
-
-    /** \returns a const pointer to the array of the number of non zeros of the inner vectors.
-      * This function is aimed at interoperability with other libraries.
-      * \warning it returns the null pointer 0 in compressed mode */
-    inline const StorageIndex* innerNonZeroPtr() const { return m_innerNonZeros; }
-    /** \returns a non-const pointer to the array of the number of non zeros of the inner vectors.
-      * This function is aimed at interoperability with other libraries.
-      * \warning it returns the null pointer 0 in compressed mode */
-    inline StorageIndex* innerNonZeroPtr() { return m_innerNonZeros; }
-
-    /** \internal */
-    inline Storage& data() { return m_data; }
-    /** \internal */
-    inline const Storage& data() const { return m_data; }
-
-    /** \returns the value of the matrix at position \a i, \a j
-      * This function returns Scalar(0) if the element is an explicit \em zero */
-    inline Scalar coeff(Index row, Index col) const
-    {
-      eigen_assert(row>=0 && row<rows() && col>=0 && col<cols());
-      
-      const Index outer = IsRowMajor ? row : col;
-      const Index inner = IsRowMajor ? col : row;
-      Index end = m_innerNonZeros ? m_outerIndex[outer] + m_innerNonZeros[outer] : m_outerIndex[outer+1];
-      return m_data.atInRange(m_outerIndex[outer], end, StorageIndex(inner));
-    }
-
-    /** \returns a non-const reference to the value of the matrix at position \a i, \a j
-      *
-      * If the element does not exist then it is inserted via the insert(Index,Index) function
-      * which itself turns the matrix into a non compressed form if that was not the case.
-      *
-      * This is a O(log(nnz_j)) operation (binary search) plus the cost of insert(Index,Index)
-      * function if the element does not already exist.
-      */
-    inline Scalar& coeffRef(Index row, Index col)
-    {
-      eigen_assert(row>=0 && row<rows() && col>=0 && col<cols());
-      
-      const Index outer = IsRowMajor ? row : col;
-      const Index inner = IsRowMajor ? col : row;
-
-      Index start = m_outerIndex[outer];
-      Index end = m_innerNonZeros ? m_outerIndex[outer] + m_innerNonZeros[outer] : m_outerIndex[outer+1];
-      eigen_assert(end>=start && "you probably called coeffRef on a non finalized matrix");
-      if(end<=start)
-        return insert(row,col);
-      const Index p = m_data.searchLowerIndex(start,end-1,StorageIndex(inner));
-      if((p<end) && (m_data.index(p)==inner))
-        return m_data.value(p);
-      else
-        return insert(row,col);
-    }
-
-    /** \returns a reference to a novel non zero coefficient with coordinates \a row x \a col.
-      * The non zero coefficient must \b not already exist.
-      *
-      * If the matrix \c *this is in compressed mode, then \c *this is turned into uncompressed
-      * mode while reserving room for 2 x this->innerSize() non zeros if reserve(Index) has not been called earlier.
-      * In this case, the insertion procedure is optimized for a \e sequential insertion mode where elements are assumed to be
-      * inserted by increasing outer-indices.
-      * 
-      * If that's not the case, then it is strongly recommended to either use a triplet-list to assemble the matrix, or to first
-      * call reserve(const SizesType &) to reserve the appropriate number of non-zero elements per inner vector.
-      *
-      * Assuming memory has been appropriately reserved, this function performs a sorted insertion in O(1)
-      * if the elements of each inner vector are inserted in increasing inner index order, and in O(nnz_j) for a random insertion.
-      *
-      */
-    Scalar& insert(Index row, Index col);
-
-  public:
-
-    /** Removes all non zeros but keep allocated memory
-      *
-      * This function does not free the currently allocated memory. To release as much as memory as possible,
-      * call \code mat.data().squeeze(); \endcode after resizing it.
-      * 
-      * \sa resize(Index,Index), data()
-      */
-    inline void setZero()
-    {
-      m_data.clear();
-      memset(m_outerIndex, 0, (m_outerSize+1)*sizeof(StorageIndex));
-      if(m_innerNonZeros)
-        memset(m_innerNonZeros, 0, (m_outerSize)*sizeof(StorageIndex));
-    }
-
-    /** Preallocates \a reserveSize non zeros.
-      *
-      * Precondition: the matrix must be in compressed mode. */
-    inline void reserve(Index reserveSize)
-    {
-      eigen_assert(isCompressed() && "This function does not make sense in non compressed mode.");
-      m_data.reserve(reserveSize);
-    }
-    
-    #ifdef EIGEN_PARSED_BY_DOXYGEN
-    /** Preallocates \a reserveSize[\c j] non zeros for each column (resp. row) \c j.
-      *
-      * This function turns the matrix in non-compressed mode.
-      * 
-      * The type \c SizesType must expose the following interface:
-        \code
-        typedef value_type;
-        const value_type& operator[](i) const;
-        \endcode
-      * for \c i in the [0,this->outerSize()[ range.
-      * Typical choices include std::vector<int>, Eigen::VectorXi, Eigen::VectorXi::Constant, etc.
-      */
-    template<class SizesType>
-    inline void reserve(const SizesType& reserveSizes);
-    #else
-    template<class SizesType>
-    inline void reserve(const SizesType& reserveSizes, const typename SizesType::value_type& enableif =
-    #if (!EIGEN_COMP_MSVC) || (EIGEN_COMP_MSVC>=1500) // MSVC 2005 fails to compile with this typename
-        typename
-    #endif
-        SizesType::value_type())
-    {
-      EIGEN_UNUSED_VARIABLE(enableif);
-      reserveInnerVectors(reserveSizes);
-    }
-    #endif // EIGEN_PARSED_BY_DOXYGEN
-  protected:
-    template<class SizesType>
-    inline void reserveInnerVectors(const SizesType& reserveSizes)
-    {
-      if(isCompressed())
-      {
-        Index totalReserveSize = 0;
-        // turn the matrix into non-compressed mode
-        m_innerNonZeros = static_cast<StorageIndex*>(std::malloc(m_outerSize * sizeof(StorageIndex)));
-        if (!m_innerNonZeros) internal::throw_std_bad_alloc();
-        
-        // temporarily use m_innerSizes to hold the new starting points.
-        StorageIndex* newOuterIndex = m_innerNonZeros;
-        
-        StorageIndex count = 0;
-        for(Index j=0; j<m_outerSize; ++j)
-        {
-          newOuterIndex[j] = count;
-          count += reserveSizes[j] + (m_outerIndex[j+1]-m_outerIndex[j]);
-          totalReserveSize += reserveSizes[j];
-        }
-        m_data.reserve(totalReserveSize);
-        StorageIndex previousOuterIndex = m_outerIndex[m_outerSize];
-        for(Index j=m_outerSize-1; j>=0; --j)
-        {
-          StorageIndex innerNNZ = previousOuterIndex - m_outerIndex[j];
-          for(Index i=innerNNZ-1; i>=0; --i)
-          {
-            m_data.index(newOuterIndex[j]+i) = m_data.index(m_outerIndex[j]+i);
-            m_data.value(newOuterIndex[j]+i) = m_data.value(m_outerIndex[j]+i);
-          }
-          previousOuterIndex = m_outerIndex[j];
-          m_outerIndex[j] = newOuterIndex[j];
-          m_innerNonZeros[j] = innerNNZ;
-        }
-        if(m_outerSize>0)
-          m_outerIndex[m_outerSize] = m_outerIndex[m_outerSize-1] + m_innerNonZeros[m_outerSize-1] + reserveSizes[m_outerSize-1];
-        
-        m_data.resize(m_outerIndex[m_outerSize]);
-      }
-      else
-      {
-        StorageIndex* newOuterIndex = static_cast<StorageIndex*>(std::malloc((m_outerSize+1)*sizeof(StorageIndex)));
-        if (!newOuterIndex) internal::throw_std_bad_alloc();
-        
-        StorageIndex count = 0;
-        for(Index j=0; j<m_outerSize; ++j)
-        {
-          newOuterIndex[j] = count;
-          StorageIndex alreadyReserved = (m_outerIndex[j+1]-m_outerIndex[j]) - m_innerNonZeros[j];
-          StorageIndex toReserve = std::max<StorageIndex>(reserveSizes[j], alreadyReserved);
-          count += toReserve + m_innerNonZeros[j];
-        }
-        newOuterIndex[m_outerSize] = count;
-        
-        m_data.resize(count);
-        for(Index j=m_outerSize-1; j>=0; --j)
-        {
-          Index offset = newOuterIndex[j] - m_outerIndex[j];
-          if(offset>0)
-          {
-            StorageIndex innerNNZ = m_innerNonZeros[j];
-            for(Index i=innerNNZ-1; i>=0; --i)
-            {
-              m_data.index(newOuterIndex[j]+i) = m_data.index(m_outerIndex[j]+i);
-              m_data.value(newOuterIndex[j]+i) = m_data.value(m_outerIndex[j]+i);
-            }
-          }
-        }
-        
-        std::swap(m_outerIndex, newOuterIndex);
-        std::free(newOuterIndex);
-      }
-      
-    }
-  public:
-
-    //--- low level purely coherent filling ---
-
-    /** \internal
-      * \returns a reference to the non zero coefficient at position \a row, \a col assuming that:
-      * - the nonzero does not already exist
-      * - the new coefficient is the last one according to the storage order
-      *
-      * Before filling a given inner vector you must call the statVec(Index) function.
-      *
-      * After an insertion session, you should call the finalize() function.
-      *
-      * \sa insert, insertBackByOuterInner, startVec */
-    inline Scalar& insertBack(Index row, Index col)
-    {
-      return insertBackByOuterInner(IsRowMajor?row:col, IsRowMajor?col:row);
-    }
-
-    /** \internal
-      * \sa insertBack, startVec */
-    inline Scalar& insertBackByOuterInner(Index outer, Index inner)
-    {
-      eigen_assert(Index(m_outerIndex[outer+1]) == m_data.size() && "Invalid ordered insertion (invalid outer index)");
-      eigen_assert( (m_outerIndex[outer+1]-m_outerIndex[outer]==0 || m_data.index(m_data.size()-1)<inner) && "Invalid ordered insertion (invalid inner index)");
-      Index p = m_outerIndex[outer+1];
-      ++m_outerIndex[outer+1];
-      m_data.append(Scalar(0), inner);
-      return m_data.value(p);
-    }
-
-    /** \internal
-      * \warning use it only if you know what you are doing */
-    inline Scalar& insertBackByOuterInnerUnordered(Index outer, Index inner)
-    {
-      Index p = m_outerIndex[outer+1];
-      ++m_outerIndex[outer+1];
-      m_data.append(Scalar(0), inner);
-      return m_data.value(p);
-    }
-
-    /** \internal
-      * \sa insertBack, insertBackByOuterInner */
-    inline void startVec(Index outer)
-    {
-      eigen_assert(m_outerIndex[outer]==Index(m_data.size()) && "You must call startVec for each inner vector sequentially");
-      eigen_assert(m_outerIndex[outer+1]==0 && "You must call startVec for each inner vector sequentially");
-      m_outerIndex[outer+1] = m_outerIndex[outer];
-    }
-
-    /** \internal
-      * Must be called after inserting a set of non zero entries using the low level compressed API.
-      */
-    inline void finalize()
-    {
-      if(isCompressed())
-      {
-        StorageIndex size = internal::convert_index<StorageIndex>(m_data.size());
-        Index i = m_outerSize;
-        // find the last filled column
-        while (i>=0 && m_outerIndex[i]==0)
-          --i;
-        ++i;
-        while (i<=m_outerSize)
-        {
-          m_outerIndex[i] = size;
-          ++i;
-        }
-      }
-    }
-
-    //---
-
-    template<typename InputIterators>
-    void setFromTriplets(const InputIterators& begin, const InputIterators& end);
-
-    template<typename InputIterators,typename DupFunctor>
-    void setFromTriplets(const InputIterators& begin, const InputIterators& end, DupFunctor dup_func);
-
-    void sumupDuplicates() { collapseDuplicates(internal::scalar_sum_op<Scalar,Scalar>()); }
-
-    template<typename DupFunctor>
-    void collapseDuplicates(DupFunctor dup_func = DupFunctor());
-
-    //---
-    
-    /** \internal
-      * same as insert(Index,Index) except that the indices are given relative to the storage order */
-    Scalar& insertByOuterInner(Index j, Index i)
-    {
-      return insert(IsRowMajor ? j : i, IsRowMajor ? i : j);
-    }
-
-    /** Turns the matrix into the \em compressed format.
-      */
-    void makeCompressed()
-    {
-      if(isCompressed())
-        return;
-      
-      eigen_internal_assert(m_outerIndex!=0 && m_outerSize>0);
-      
-      Index oldStart = m_outerIndex[1];
-      m_outerIndex[1] = m_innerNonZeros[0];
-      for(Index j=1; j<m_outerSize; ++j)
-      {
-        Index nextOldStart = m_outerIndex[j+1];
-        Index offset = oldStart - m_outerIndex[j];
-        if(offset>0)
-        {
-          for(Index k=0; k<m_innerNonZeros[j]; ++k)
-          {
-            m_data.index(m_outerIndex[j]+k) = m_data.index(oldStart+k);
-            m_data.value(m_outerIndex[j]+k) = m_data.value(oldStart+k);
-          }
-        }
-        m_outerIndex[j+1] = m_outerIndex[j] + m_innerNonZeros[j];
-        oldStart = nextOldStart;
-      }
-      std::free(m_innerNonZeros);
-      m_innerNonZeros = 0;
-      m_data.resize(m_outerIndex[m_outerSize]);
-      m_data.squeeze();
-    }
-
-    /** Turns the matrix into the uncompressed mode */
-    void uncompress()
-    {
-      if(m_innerNonZeros != 0)
-        return; 
-      m_innerNonZeros = static_cast<StorageIndex*>(std::malloc(m_outerSize * sizeof(StorageIndex)));
-      for (Index i = 0; i < m_outerSize; i++)
-      {
-        m_innerNonZeros[i] = m_outerIndex[i+1] - m_outerIndex[i]; 
-      }
-    }
-
-    /** Suppresses all nonzeros which are \b much \b smaller \b than \a reference under the tolerance \a epsilon */
-    void prune(const Scalar& reference, const RealScalar& epsilon = NumTraits<RealScalar>::dummy_precision())
-    {
-      prune(default_prunning_func(reference,epsilon));
-    }
-    
-    /** Turns the matrix into compressed format, and suppresses all nonzeros which do not satisfy the predicate \a keep.
-      * The functor type \a KeepFunc must implement the following function:
-      * \code
-      * bool operator() (const Index& row, const Index& col, const Scalar& value) const;
-      * \endcode
-      * \sa prune(Scalar,RealScalar)
-      */
-    template<typename KeepFunc>
-    void prune(const KeepFunc& keep = KeepFunc())
-    {
-      // TODO optimize the uncompressed mode to avoid moving and allocating the data twice
-      makeCompressed();
-
-      StorageIndex k = 0;
-      for(Index j=0; j<m_outerSize; ++j)
-      {
-        Index previousStart = m_outerIndex[j];
-        m_outerIndex[j] = k;
-        Index end = m_outerIndex[j+1];
-        for(Index i=previousStart; i<end; ++i)
-        {
-          if(keep(IsRowMajor?j:m_data.index(i), IsRowMajor?m_data.index(i):j, m_data.value(i)))
-          {
-            m_data.value(k) = m_data.value(i);
-            m_data.index(k) = m_data.index(i);
-            ++k;
-          }
-        }
-      }
-      m_outerIndex[m_outerSize] = k;
-      m_data.resize(k,0);
-    }
-
-    /** Resizes the matrix to a \a rows x \a cols matrix leaving old values untouched.
-      *
-      * If the sizes of the matrix are decreased, then the matrix is turned to \b uncompressed-mode
-      * and the storage of the out of bounds coefficients is kept and reserved.
-      * Call makeCompressed() to pack the entries and squeeze extra memory.
-      *
-      * \sa reserve(), setZero(), makeCompressed()
-      */
-    void conservativeResize(Index rows, Index cols) 
-    {
-      // No change
-      if (this->rows() == rows && this->cols() == cols) return;
-      
-      // If one dimension is null, then there is nothing to be preserved
-      if(rows==0 || cols==0) return resize(rows,cols);
-
-      Index innerChange = IsRowMajor ? cols - this->cols() : rows - this->rows();
-      Index outerChange = IsRowMajor ? rows - this->rows() : cols - this->cols();
-      StorageIndex newInnerSize = convert_index(IsRowMajor ? cols : rows);
-
-      // Deals with inner non zeros
-      if (m_innerNonZeros)
-      {
-        // Resize m_innerNonZeros
-        StorageIndex *newInnerNonZeros = static_cast<StorageIndex*>(std::realloc(m_innerNonZeros, (m_outerSize + outerChange) * sizeof(StorageIndex)));
-        if (!newInnerNonZeros) internal::throw_std_bad_alloc();
-        m_innerNonZeros = newInnerNonZeros;
-        
-        for(Index i=m_outerSize; i<m_outerSize+outerChange; i++)          
-          m_innerNonZeros[i] = 0;
-      } 
-      else if (innerChange < 0) 
-      {
-        // Inner size decreased: allocate a new m_innerNonZeros
-        m_innerNonZeros = static_cast<StorageIndex*>(std::malloc((m_outerSize + outerChange) * sizeof(StorageIndex)));
-        if (!m_innerNonZeros) internal::throw_std_bad_alloc();
-        for(Index i = 0; i < m_outerSize + (std::min)(outerChange, Index(0)); i++)
-          m_innerNonZeros[i] = m_outerIndex[i+1] - m_outerIndex[i];
-        for(Index i = m_outerSize; i < m_outerSize + outerChange; i++)
-          m_innerNonZeros[i] = 0;
-      }
-      
-      // Change the m_innerNonZeros in case of a decrease of inner size
-      if (m_innerNonZeros && innerChange < 0)
-      {
-        for(Index i = 0; i < m_outerSize + (std::min)(outerChange, Index(0)); i++)
-        {
-          StorageIndex &n = m_innerNonZeros[i];
-          StorageIndex start = m_outerIndex[i];
-          while (n > 0 && m_data.index(start+n-1) >= newInnerSize) --n; 
-        }
-      }
-      
-      m_innerSize = newInnerSize;
-
-      // Re-allocate outer index structure if necessary
-      if (outerChange == 0)
-        return;
-          
-      StorageIndex *newOuterIndex = static_cast<StorageIndex*>(std::realloc(m_outerIndex, (m_outerSize + outerChange + 1) * sizeof(StorageIndex)));
-      if (!newOuterIndex) internal::throw_std_bad_alloc();
-      m_outerIndex = newOuterIndex;
-      if (outerChange > 0)
-      {
-        StorageIndex lastIdx = m_outerSize == 0 ? 0 : m_outerIndex[m_outerSize];
-        for(Index i=m_outerSize; i<m_outerSize+outerChange+1; i++)          
-          m_outerIndex[i] = lastIdx; 
-      }
-      m_outerSize += outerChange;
-    }
-    
-    /** Resizes the matrix to a \a rows x \a cols matrix and initializes it to zero.
-      * 
-      * This function does not free the currently allocated memory. To release as much as memory as possible,
-      * call \code mat.data().squeeze(); \endcode after resizing it.
-      * 
-      * \sa reserve(), setZero()
-      */
-    void resize(Index rows, Index cols)
-    {
-      const Index outerSize = IsRowMajor ? rows : cols;
-      m_innerSize = IsRowMajor ? cols : rows;
-      m_data.clear();
-      if (m_outerSize != outerSize || m_outerSize==0)
-      {
-        std::free(m_outerIndex);
-        m_outerIndex = static_cast<StorageIndex*>(std::malloc((outerSize + 1) * sizeof(StorageIndex)));
-        if (!m_outerIndex) internal::throw_std_bad_alloc();
-        
-        m_outerSize = outerSize;
-      }
-      if(m_innerNonZeros)
-      {
-        std::free(m_innerNonZeros);
-        m_innerNonZeros = 0;
-      }
-      memset(m_outerIndex, 0, (m_outerSize+1)*sizeof(StorageIndex));
-    }
-
-    /** \internal
-      * Resize the nonzero vector to \a size */
-    void resizeNonZeros(Index size)
-    {
-      m_data.resize(size);
-    }
-
-    /** \returns a const expression of the diagonal coefficients. */
-    const ConstDiagonalReturnType diagonal() const { return ConstDiagonalReturnType(*this); }
-    
-    /** \returns a read-write expression of the diagonal coefficients.
-      * \warning If the diagonal entries are written, then all diagonal
-      * entries \b must already exist, otherwise an assertion will be raised.
-      */
-    DiagonalReturnType diagonal() { return DiagonalReturnType(*this); }
-
-    /** Default constructor yielding an empty \c 0 \c x \c 0 matrix */
-    inline SparseMatrix()
-      : m_outerSize(-1), m_innerSize(0), m_outerIndex(0), m_innerNonZeros(0)
-    {
-      check_template_parameters();
-      resize(0, 0);
-    }
-
-    /** Constructs a \a rows \c x \a cols empty matrix */
-    inline SparseMatrix(Index rows, Index cols)
-      : m_outerSize(0), m_innerSize(0), m_outerIndex(0), m_innerNonZeros(0)
-    {
-      check_template_parameters();
-      resize(rows, cols);
-    }
-
-    /** Constructs a sparse matrix from the sparse expression \a other */
-    template<typename OtherDerived>
-    inline SparseMatrix(const SparseMatrixBase<OtherDerived>& other)
-      : m_outerSize(0), m_innerSize(0), m_outerIndex(0), m_innerNonZeros(0)
-    {
-      EIGEN_STATIC_ASSERT((internal::is_same<Scalar, typename OtherDerived::Scalar>::value),
-        YOU_MIXED_DIFFERENT_NUMERIC_TYPES__YOU_NEED_TO_USE_THE_CAST_METHOD_OF_MATRIXBASE_TO_CAST_NUMERIC_TYPES_EXPLICITLY)
-      check_template_parameters();
-      const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator<OtherDerived>::Flags & RowMajorBit);
-      if (needToTranspose)
-        *this = other.derived();
-      else
-      {
-        #ifdef EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
-          EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
-        #endif
-        internal::call_assignment_no_alias(*this, other.derived());
-      }
-    }
-    
-    /** Constructs a sparse matrix from the sparse selfadjoint view \a other */
-    template<typename OtherDerived, unsigned int UpLo>
-    inline SparseMatrix(const SparseSelfAdjointView<OtherDerived, UpLo>& other)
-      : m_outerSize(0), m_innerSize(0), m_outerIndex(0), m_innerNonZeros(0)
-    {
-      check_template_parameters();
-      Base::operator=(other);
-    }
-
-    /** Copy constructor (it performs a deep copy) */
-    inline SparseMatrix(const SparseMatrix& other)
-      : Base(), m_outerSize(0), m_innerSize(0), m_outerIndex(0), m_innerNonZeros(0)
-    {
-      check_template_parameters();
-      *this = other.derived();
-    }
-
-    /** \brief Copy constructor with in-place evaluation */
-    template<typename OtherDerived>
-    SparseMatrix(const ReturnByValue<OtherDerived>& other)
-      : Base(), m_outerSize(0), m_innerSize(0), m_outerIndex(0), m_innerNonZeros(0)
-    {
-      check_template_parameters();
-      initAssignment(other);
-      other.evalTo(*this);
-    }
-    
-    /** \brief Copy constructor with in-place evaluation */
-    template<typename OtherDerived>
-    explicit SparseMatrix(const DiagonalBase<OtherDerived>& other)
-      : Base(), m_outerSize(0), m_innerSize(0), m_outerIndex(0), m_innerNonZeros(0)
-    {
-      check_template_parameters();
-      *this = other.derived();
-    }
-
-    /** Swaps the content of two sparse matrices of the same type.
-      * This is a fast operation that simply swaps the underlying pointers and parameters. */
-    inline void swap(SparseMatrix& other)
-    {
-      //EIGEN_DBG_SPARSE(std::cout << "SparseMatrix:: swap\n");
-      std::swap(m_outerIndex, other.m_outerIndex);
-      std::swap(m_innerSize, other.m_innerSize);
-      std::swap(m_outerSize, other.m_outerSize);
-      std::swap(m_innerNonZeros, other.m_innerNonZeros);
-      m_data.swap(other.m_data);
-    }
-
-    /** Sets *this to the identity matrix.
-      * This function also turns the matrix into compressed mode, and drop any reserved memory. */
-    inline void setIdentity()
-    {
-      eigen_assert(rows() == cols() && "ONLY FOR SQUARED MATRICES");
-      this->m_data.resize(rows());
-      Eigen::Map<IndexVector>(this->m_data.indexPtr(), rows()).setLinSpaced(0, StorageIndex(rows()-1));
-      Eigen::Map<ScalarVector>(this->m_data.valuePtr(), rows()).setOnes();
-      Eigen::Map<IndexVector>(this->m_outerIndex, rows()+1).setLinSpaced(0, StorageIndex(rows()));
-      std::free(m_innerNonZeros);
-      m_innerNonZeros = 0;
-    }
-    inline SparseMatrix& operator=(const SparseMatrix& other)
-    {
-      if (other.isRValue())
-      {
-        swap(other.const_cast_derived());
-      }
-      else if(this!=&other)
-      {
-        #ifdef EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
-          EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
-        #endif
-        initAssignment(other);
-        if(other.isCompressed())
-        {
-          internal::smart_copy(other.m_outerIndex, other.m_outerIndex + m_outerSize + 1, m_outerIndex);
-          m_data = other.m_data;
-        }
-        else
-        {
-          Base::operator=(other);
-        }
-      }
-      return *this;
-    }
-
-#ifndef EIGEN_PARSED_BY_DOXYGEN
-    template<typename OtherDerived>
-    inline SparseMatrix& operator=(const EigenBase<OtherDerived>& other)
-    { return Base::operator=(other.derived()); }
-
-    template<typename Lhs, typename Rhs>
-    inline SparseMatrix& operator=(const Product<Lhs,Rhs,AliasFreeProduct>& other);
-#endif // EIGEN_PARSED_BY_DOXYGEN
-
-    template<typename OtherDerived>
-    EIGEN_DONT_INLINE SparseMatrix& operator=(const SparseMatrixBase<OtherDerived>& other);
-
-    friend std::ostream & operator << (std::ostream & s, const SparseMatrix& m)
-    {
-      EIGEN_DBG_SPARSE(
-        s << "Nonzero entries:\n";
-        if(m.isCompressed())
-        {
-          for (Index i=0; i<m.nonZeros(); ++i)
-            s << "(" << m.m_data.value(i) << "," << m.m_data.index(i) << ") ";
-        }
-        else
-        {
-          for (Index i=0; i<m.outerSize(); ++i)
-          {
-            Index p = m.m_outerIndex[i];
-            Index pe = m.m_outerIndex[i]+m.m_innerNonZeros[i];
-            Index k=p;
-            for (; k<pe; ++k) {
-              s << "(" << m.m_data.value(k) << "," << m.m_data.index(k) << ") ";
-            }
-            for (; k<m.m_outerIndex[i+1]; ++k) {
-              s << "(_,_) ";
-            }
-          }
-        }
-        s << std::endl;
-        s << std::endl;
-        s << "Outer pointers:\n";
-        for (Index i=0; i<m.outerSize(); ++i) {
-          s << m.m_outerIndex[i] << " ";
-        }
-        s << " $" << std::endl;
-        if(!m.isCompressed())
-        {
-          s << "Inner non zeros:\n";
-          for (Index i=0; i<m.outerSize(); ++i) {
-            s << m.m_innerNonZeros[i] << " ";
-          }
-          s << " $" << std::endl;
-        }
-        s << std::endl;
-      );
-      s << static_cast<const SparseMatrixBase<SparseMatrix>&>(m);
-      return s;
-    }
-
-    /** Destructor */
-    inline ~SparseMatrix()
-    {
-      std::free(m_outerIndex);
-      std::free(m_innerNonZeros);
-    }
-
-    /** Overloaded for performance */
-    Scalar sum() const;
-    
-#   ifdef EIGEN_SPARSEMATRIX_PLUGIN
-#     include EIGEN_SPARSEMATRIX_PLUGIN
-#   endif
-
-protected:
-
-    template<typename Other>
-    void initAssignment(const Other& other)
-    {
-      resize(other.rows(), other.cols());
-      if(m_innerNonZeros)
-      {
-        std::free(m_innerNonZeros);
-        m_innerNonZeros = 0;
-      }
-    }
-
-    /** \internal
-      * \sa insert(Index,Index) */
-    EIGEN_DONT_INLINE Scalar& insertCompressed(Index row, Index col);
-
-    /** \internal
-      * A vector object that is equal to 0 everywhere but v at the position i */
-    class SingletonVector
-    {
-        StorageIndex m_index;
-        StorageIndex m_value;
-      public:
-        typedef StorageIndex value_type;
-        SingletonVector(Index i, Index v)
-          : m_index(convert_index(i)), m_value(convert_index(v))
-        {}
-
-        StorageIndex operator[](Index i) const { return i==m_index ? m_value : 0; }
-    };
-
-    /** \internal
-      * \sa insert(Index,Index) */
-    EIGEN_DONT_INLINE Scalar& insertUncompressed(Index row, Index col);
-
-public:
-    /** \internal
-      * \sa insert(Index,Index) */
-    EIGEN_STRONG_INLINE Scalar& insertBackUncompressed(Index row, Index col)
-    {
-      const Index outer = IsRowMajor ? row : col;
-      const Index inner = IsRowMajor ? col : row;
-
-      eigen_assert(!isCompressed());
-      eigen_assert(m_innerNonZeros[outer]<=(m_outerIndex[outer+1] - m_outerIndex[outer]));
-
-      Index p = m_outerIndex[outer] + m_innerNonZeros[outer]++;
-      m_data.index(p) = convert_index(inner);
-      return (m_data.value(p) = Scalar(0));
-    }
-protected:
-    struct IndexPosPair {
-      IndexPosPair(Index a_i, Index a_p) : i(a_i), p(a_p) {}
-      Index i;
-      Index p;
-    };
-
-    /** \internal assign \a diagXpr to the diagonal of \c *this
-      * There are different strategies:
-      *   1 - if *this is overwritten (Func==assign_op) or *this is empty, then we can work treat *this as a dense vector expression.
-      *   2 - otherwise, for each diagonal coeff,
-      *     2.a - if it already exists, then we update it,
-      *     2.b - otherwise, if *this is uncompressed and that the current inner-vector has empty room for at least 1 element, then we perform an in-place insertion.
-      *     2.c - otherwise, we'll have to reallocate and copy everything, so instead of doing so for each new element, it is recorded in a std::vector.
-      *   3 - at the end, if some entries failed to be inserted in-place, then we alloc a new buffer, copy each chunk at the right position, and insert the new elements.
-      * 
-      * TODO: some piece of code could be isolated and reused for a general in-place update strategy.
-      * TODO: if we start to defer the insertion of some elements (i.e., case 2.c executed once),
-      *       then it *might* be better to disable case 2.b since they will have to be copied anyway.
-      */
-    template<typename DiagXpr, typename Func>
-    void assignDiagonal(const DiagXpr diagXpr, const Func& assignFunc)
-    {
-      Index n = diagXpr.size();
-
-      const bool overwrite = internal::is_same<Func, internal::assign_op<Scalar,Scalar> >::value;
-      if(overwrite)
-      {
-        if((this->rows()!=n) || (this->cols()!=n))
-          this->resize(n, n);
-      }
-
-      if(m_data.size()==0 || overwrite)
-      {
-        typedef Array<StorageIndex,Dynamic,1> ArrayXI;  
-        this->makeCompressed();
-        this->resizeNonZeros(n);
-        Eigen::Map<ArrayXI>(this->innerIndexPtr(), n).setLinSpaced(0,StorageIndex(n)-1);
-        Eigen::Map<ArrayXI>(this->outerIndexPtr(), n+1).setLinSpaced(0,StorageIndex(n));
-        Eigen::Map<Array<Scalar,Dynamic,1> > values = this->coeffs();
-        values.setZero();
-        internal::call_assignment_no_alias(values, diagXpr, assignFunc);
-      }
-      else
-      {
-        bool isComp = isCompressed();
-        internal::evaluator<DiagXpr> diaEval(diagXpr);
-        std::vector<IndexPosPair> newEntries;
-
-        // 1 - try in-place update and record insertion failures
-        for(Index i = 0; i<n; ++i)
-        {
-          internal::LowerBoundIndex lb = this->lower_bound(i,i);
-          Index p = lb.value;
-          if(lb.found)
-          {
-            // the coeff already exists
-            assignFunc.assignCoeff(m_data.value(p), diaEval.coeff(i));
-          }
-          else if((!isComp) && m_innerNonZeros[i] < (m_outerIndex[i+1]-m_outerIndex[i]))
-          {
-            // non compressed mode with local room for inserting one element
-            m_data.moveChunk(p, p+1, m_outerIndex[i]+m_innerNonZeros[i]-p);
-            m_innerNonZeros[i]++;
-            m_data.value(p) = Scalar(0);
-            m_data.index(p) = StorageIndex(i);
-            assignFunc.assignCoeff(m_data.value(p), diaEval.coeff(i));
-          }
-          else
-          {
-            // defer insertion
-            newEntries.push_back(IndexPosPair(i,p));
-          }
-        }
-        // 2 - insert deferred entries
-        Index n_entries = Index(newEntries.size());
-        if(n_entries>0)
-        {
-          Storage newData(m_data.size()+n_entries);
-          Index prev_p = 0;
-          Index prev_i = 0;
-          for(Index k=0; k<n_entries;++k)
-          {
-            Index i = newEntries[k].i;
-            Index p = newEntries[k].p;
-            internal::smart_copy(m_data.valuePtr()+prev_p, m_data.valuePtr()+p, newData.valuePtr()+prev_p+k);
-            internal::smart_copy(m_data.indexPtr()+prev_p, m_data.indexPtr()+p, newData.indexPtr()+prev_p+k);
-            for(Index j=prev_i;j<i;++j)
-              m_outerIndex[j+1] += k;
-            if(!isComp)
-              m_innerNonZeros[i]++;
-            prev_p = p;
-            prev_i = i;
-            newData.value(p+k) = Scalar(0);
-            newData.index(p+k) = StorageIndex(i);
-            assignFunc.assignCoeff(newData.value(p+k), diaEval.coeff(i));
-          }
-          {
-            internal::smart_copy(m_data.valuePtr()+prev_p, m_data.valuePtr()+m_data.size(), newData.valuePtr()+prev_p+n_entries);
-            internal::smart_copy(m_data.indexPtr()+prev_p, m_data.indexPtr()+m_data.size(), newData.indexPtr()+prev_p+n_entries);
-            for(Index j=prev_i+1;j<=m_outerSize;++j)
-              m_outerIndex[j] += n_entries;
-          }
-          m_data.swap(newData);
-        }
-      }
-    }
-
-private:
-  static void check_template_parameters()
-  {
-    EIGEN_STATIC_ASSERT(NumTraits<StorageIndex>::IsSigned,THE_INDEX_TYPE_MUST_BE_A_SIGNED_TYPE);
-    EIGEN_STATIC_ASSERT((Options&(ColMajor|RowMajor))==Options,INVALID_MATRIX_TEMPLATE_PARAMETERS);
-  }
-
-  struct default_prunning_func {
-    default_prunning_func(const Scalar& ref, const RealScalar& eps) : reference(ref), epsilon(eps) {}
-    inline bool operator() (const Index&, const Index&, const Scalar& value) const
-    {
-      return !internal::isMuchSmallerThan(value, reference, epsilon);
-    }
-    Scalar reference;
-    RealScalar epsilon;
-  };
-};
-
-namespace internal {
-
-template<typename InputIterator, typename SparseMatrixType, typename DupFunctor>
-void set_from_triplets(const InputIterator& begin, const InputIterator& end, SparseMatrixType& mat, DupFunctor dup_func)
-{
-  enum { IsRowMajor = SparseMatrixType::IsRowMajor };
-  typedef typename SparseMatrixType::Scalar Scalar;
-  typedef typename SparseMatrixType::StorageIndex StorageIndex;
-  SparseMatrix<Scalar,IsRowMajor?ColMajor:RowMajor,StorageIndex> trMat(mat.rows(),mat.cols());
-
-  if(begin!=end)
-  {
-    // pass 1: count the nnz per inner-vector
-    typename SparseMatrixType::IndexVector wi(trMat.outerSize());
-    wi.setZero();
-    for(InputIterator it(begin); it!=end; ++it)
-    {
-      eigen_assert(it->row()>=0 && it->row()<mat.rows() && it->col()>=0 && it->col()<mat.cols());
-      wi(IsRowMajor ? it->col() : it->row())++;
-    }
-
-    // pass 2: insert all the elements into trMat
-    trMat.reserve(wi);
-    for(InputIterator it(begin); it!=end; ++it)
-      trMat.insertBackUncompressed(it->row(),it->col()) = it->value();
-
-    // pass 3:
-    trMat.collapseDuplicates(dup_func);
-  }
-
-  // pass 4: transposed copy -> implicit sorting
-  mat = trMat;
-}
-
-}
-
-
-/** Fill the matrix \c *this with the list of \em triplets defined by the iterator range \a begin - \a end.
-  *
-  * A \em triplet is a tuple (i,j,value) defining a non-zero element.
-  * The input list of triplets does not have to be sorted, and can contains duplicated elements.
-  * In any case, the result is a \b sorted and \b compressed sparse matrix where the duplicates have been summed up.
-  * This is a \em O(n) operation, with \em n the number of triplet elements.
-  * The initial contents of \c *this is destroyed.
-  * The matrix \c *this must be properly resized beforehand using the SparseMatrix(Index,Index) constructor,
-  * or the resize(Index,Index) method. The sizes are not extracted from the triplet list.
-  *
-  * The \a InputIterators value_type must provide the following interface:
-  * \code
-  * Scalar value() const; // the value
-  * Scalar row() const;   // the row index i
-  * Scalar col() const;   // the column index j
-  * \endcode
-  * See for instance the Eigen::Triplet template class.
-  *
-  * Here is a typical usage example:
-  * \code
-    typedef Triplet<double> T;
-    std::vector<T> tripletList;
-    tripletList.reserve(estimation_of_entries);
-    for(...)
-    {
-      // ...
-      tripletList.push_back(T(i,j,v_ij));
-    }
-    SparseMatrixType m(rows,cols);
-    m.setFromTriplets(tripletList.begin(), tripletList.end());
-    // m is ready to go!
-  * \endcode
-  *
-  * \warning The list of triplets is read multiple times (at least twice). Therefore, it is not recommended to define
-  * an abstract iterator over a complex data-structure that would be expensive to evaluate. The triplets should rather
-  * be explicitly stored into a std::vector for instance.
-  */
-template<typename Scalar, int _Options, typename _StorageIndex>
-template<typename InputIterators>
-void SparseMatrix<Scalar,_Options,_StorageIndex>::setFromTriplets(const InputIterators& begin, const InputIterators& end)
-{
-  internal::set_from_triplets<InputIterators, SparseMatrix<Scalar,_Options,_StorageIndex> >(begin, end, *this, internal::scalar_sum_op<Scalar,Scalar>());
-}
-
-/** The same as setFromTriplets but when duplicates are met the functor \a dup_func is applied:
-  * \code
-  * value = dup_func(OldValue, NewValue)
-  * \endcode 
-  * Here is a C++11 example keeping the latest entry only:
-  * \code
-  * mat.setFromTriplets(triplets.begin(), triplets.end(), [] (const Scalar&,const Scalar &b) { return b; });
-  * \endcode
-  */
-template<typename Scalar, int _Options, typename _StorageIndex>
-template<typename InputIterators,typename DupFunctor>
-void SparseMatrix<Scalar,_Options,_StorageIndex>::setFromTriplets(const InputIterators& begin, const InputIterators& end, DupFunctor dup_func)
-{
-  internal::set_from_triplets<InputIterators, SparseMatrix<Scalar,_Options,_StorageIndex>, DupFunctor>(begin, end, *this, dup_func);
-}
-
-/** \internal */
-template<typename Scalar, int _Options, typename _StorageIndex>
-template<typename DupFunctor>
-void SparseMatrix<Scalar,_Options,_StorageIndex>::collapseDuplicates(DupFunctor dup_func)
-{
-  eigen_assert(!isCompressed());
-  // TODO, in practice we should be able to use m_innerNonZeros for that task
-  IndexVector wi(innerSize());
-  wi.fill(-1);
-  StorageIndex count = 0;
-  // for each inner-vector, wi[inner_index] will hold the position of first element into the index/value buffers
-  for(Index j=0; j<outerSize(); ++j)
-  {
-    StorageIndex start   = count;
-    Index oldEnd  = m_outerIndex[j]+m_innerNonZeros[j];
-    for(Index k=m_outerIndex[j]; k<oldEnd; ++k)
-    {
-      Index i = m_data.index(k);
-      if(wi(i)>=start)
-      {
-        // we already meet this entry => accumulate it
-        m_data.value(wi(i)) = dup_func(m_data.value(wi(i)), m_data.value(k));
-      }
-      else
-      {
-        m_data.value(count) = m_data.value(k);
-        m_data.index(count) = m_data.index(k);
-        wi(i) = count;
-        ++count;
-      }
-    }
-    m_outerIndex[j] = start;
-  }
-  m_outerIndex[m_outerSize] = count;
-
-  // turn the matrix into compressed form
-  std::free(m_innerNonZeros);
-  m_innerNonZeros = 0;
-  m_data.resize(m_outerIndex[m_outerSize]);
-}
-
-template<typename Scalar, int _Options, typename _StorageIndex>
-template<typename OtherDerived>
-EIGEN_DONT_INLINE SparseMatrix<Scalar,_Options,_StorageIndex>& SparseMatrix<Scalar,_Options,_StorageIndex>::operator=(const SparseMatrixBase<OtherDerived>& other)
-{
-  EIGEN_STATIC_ASSERT((internal::is_same<Scalar, typename OtherDerived::Scalar>::value),
-        YOU_MIXED_DIFFERENT_NUMERIC_TYPES__YOU_NEED_TO_USE_THE_CAST_METHOD_OF_MATRIXBASE_TO_CAST_NUMERIC_TYPES_EXPLICITLY)
-
-  #ifdef EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
-    EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
-  #endif
-      
-  const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator<OtherDerived>::Flags & RowMajorBit);
-  if (needToTranspose)
-  {
-    #ifdef EIGEN_SPARSE_TRANSPOSED_COPY_PLUGIN
-      EIGEN_SPARSE_TRANSPOSED_COPY_PLUGIN
-    #endif
-    // two passes algorithm:
-    //  1 - compute the number of coeffs per dest inner vector
-    //  2 - do the actual copy/eval
-    // Since each coeff of the rhs has to be evaluated twice, let's evaluate it if needed
-    typedef typename internal::nested_eval<OtherDerived,2,typename internal::plain_matrix_type<OtherDerived>::type >::type OtherCopy;
-    typedef typename internal::remove_all<OtherCopy>::type _OtherCopy;
-    typedef internal::evaluator<_OtherCopy> OtherCopyEval;
-    OtherCopy otherCopy(other.derived());
-    OtherCopyEval otherCopyEval(otherCopy);
-
-    SparseMatrix dest(other.rows(),other.cols());
-    Eigen::Map<IndexVector> (dest.m_outerIndex,dest.outerSize()).setZero();
-
-    // pass 1
-    // FIXME the above copy could be merged with that pass
-    for (Index j=0; j<otherCopy.outerSize(); ++j)
-      for (typename OtherCopyEval::InnerIterator it(otherCopyEval, j); it; ++it)
-        ++dest.m_outerIndex[it.index()];
-
-    // prefix sum
-    StorageIndex count = 0;
-    IndexVector positions(dest.outerSize());
-    for (Index j=0; j<dest.outerSize(); ++j)
-    {
-      StorageIndex tmp = dest.m_outerIndex[j];
-      dest.m_outerIndex[j] = count;
-      positions[j] = count;
-      count += tmp;
-    }
-    dest.m_outerIndex[dest.outerSize()] = count;
-    // alloc
-    dest.m_data.resize(count);
-    // pass 2
-    for (StorageIndex j=0; j<otherCopy.outerSize(); ++j)
-    {
-      for (typename OtherCopyEval::InnerIterator it(otherCopyEval, j); it; ++it)
-      {
-        Index pos = positions[it.index()]++;
-        dest.m_data.index(pos) = j;
-        dest.m_data.value(pos) = it.value();
-      }
-    }
-    this->swap(dest);
-    return *this;
-  }
-  else
-  {
-    if(other.isRValue())
-    {
-      initAssignment(other.derived());
-    }
-    // there is no special optimization
-    return Base::operator=(other.derived());
-  }
-}
-
-template<typename _Scalar, int _Options, typename _StorageIndex>
-typename SparseMatrix<_Scalar,_Options,_StorageIndex>::Scalar& SparseMatrix<_Scalar,_Options,_StorageIndex>::insert(Index row, Index col)
-{
-  eigen_assert(row>=0 && row<rows() && col>=0 && col<cols());
-  
-  const Index outer = IsRowMajor ? row : col;
-  const Index inner = IsRowMajor ? col : row;
-  
-  if(isCompressed())
-  {
-    if(nonZeros()==0)
-    {
-      // reserve space if not already done
-      if(m_data.allocatedSize()==0)
-        m_data.reserve(2*m_innerSize);
-      
-      // turn the matrix into non-compressed mode
-      m_innerNonZeros = static_cast<StorageIndex*>(std::malloc(m_outerSize * sizeof(StorageIndex)));
-      if(!m_innerNonZeros) internal::throw_std_bad_alloc();
-      
-      memset(m_innerNonZeros, 0, (m_outerSize)*sizeof(StorageIndex));
-      
-      // pack all inner-vectors to the end of the pre-allocated space
-      // and allocate the entire free-space to the first inner-vector
-      StorageIndex end = convert_index(m_data.allocatedSize());
-      for(Index j=1; j<=m_outerSize; ++j)
-        m_outerIndex[j] = end;
-    }
-    else
-    {
-      // turn the matrix into non-compressed mode
-      m_innerNonZeros = static_cast<StorageIndex*>(std::malloc(m_outerSize * sizeof(StorageIndex)));
-      if(!m_innerNonZeros) internal::throw_std_bad_alloc();
-      for(Index j=0; j<m_outerSize; ++j)
-        m_innerNonZeros[j] = m_outerIndex[j+1]-m_outerIndex[j];
-    }
-  }
-  
-  // check whether we can do a fast "push back" insertion
-  Index data_end = m_data.allocatedSize();
-  
-  // First case: we are filling a new inner vector which is packed at the end.
-  // We assume that all remaining inner-vectors are also empty and packed to the end.
-  if(m_outerIndex[outer]==data_end)
-  {
-    eigen_internal_assert(m_innerNonZeros[outer]==0);
-    
-    // pack previous empty inner-vectors to end of the used-space
-    // and allocate the entire free-space to the current inner-vector.
-    StorageIndex p = convert_index(m_data.size());
-    Index j = outer;
-    while(j>=0 && m_innerNonZeros[j]==0)
-      m_outerIndex[j--] = p;
-    
-    // push back the new element
-    ++m_innerNonZeros[outer];
-    m_data.append(Scalar(0), inner);
-    
-    // check for reallocation
-    if(data_end != m_data.allocatedSize())
-    {
-      // m_data has been reallocated
-      //  -> move remaining inner-vectors back to the end of the free-space
-      //     so that the entire free-space is allocated to the current inner-vector.
-      eigen_internal_assert(data_end < m_data.allocatedSize());
-      StorageIndex new_end = convert_index(m_data.allocatedSize());
-      for(Index k=outer+1; k<=m_outerSize; ++k)
-        if(m_outerIndex[k]==data_end)
-          m_outerIndex[k] = new_end;
-    }
-    return m_data.value(p);
-  }
-  
-  // Second case: the next inner-vector is packed to the end
-  // and the current inner-vector end match the used-space.
-  if(m_outerIndex[outer+1]==data_end && m_outerIndex[outer]+m_innerNonZeros[outer]==m_data.size())
-  {
-    eigen_internal_assert(outer+1==m_outerSize || m_innerNonZeros[outer+1]==0);
-    
-    // add space for the new element
-    ++m_innerNonZeros[outer];
-    m_data.resize(m_data.size()+1);
-    
-    // check for reallocation
-    if(data_end != m_data.allocatedSize())
-    {
-      // m_data has been reallocated
-      //  -> move remaining inner-vectors back to the end of the free-space
-      //     so that the entire free-space is allocated to the current inner-vector.
-      eigen_internal_assert(data_end < m_data.allocatedSize());
-      StorageIndex new_end = convert_index(m_data.allocatedSize());
-      for(Index k=outer+1; k<=m_outerSize; ++k)
-        if(m_outerIndex[k]==data_end)
-          m_outerIndex[k] = new_end;
-    }
-    
-    // and insert it at the right position (sorted insertion)
-    Index startId = m_outerIndex[outer];
-    Index p = m_outerIndex[outer]+m_innerNonZeros[outer]-1;
-    while ( (p > startId) && (m_data.index(p-1) > inner) )
-    {
-      m_data.index(p) = m_data.index(p-1);
-      m_data.value(p) = m_data.value(p-1);
-      --p;
-    }
-    
-    m_data.index(p) = convert_index(inner);
-    return (m_data.value(p) = Scalar(0));
-  }
-  
-  if(m_data.size() != m_data.allocatedSize())
-  {
-    // make sure the matrix is compatible to random un-compressed insertion:
-    m_data.resize(m_data.allocatedSize());
-    this->reserveInnerVectors(Array<StorageIndex,Dynamic,1>::Constant(m_outerSize, 2));
-  }
-  
-  return insertUncompressed(row,col);
-}
-    
-template<typename _Scalar, int _Options, typename _StorageIndex>
-EIGEN_DONT_INLINE typename SparseMatrix<_Scalar,_Options,_StorageIndex>::Scalar& SparseMatrix<_Scalar,_Options,_StorageIndex>::insertUncompressed(Index row, Index col)
-{
-  eigen_assert(!isCompressed());
-
-  const Index outer = IsRowMajor ? row : col;
-  const StorageIndex inner = convert_index(IsRowMajor ? col : row);
-
-  Index room = m_outerIndex[outer+1] - m_outerIndex[outer];
-  StorageIndex innerNNZ = m_innerNonZeros[outer];
-  if(innerNNZ>=room)
-  {
-    // this inner vector is full, we need to reallocate the whole buffer :(
-    reserve(SingletonVector(outer,std::max<StorageIndex>(2,innerNNZ)));
-  }
-
-  Index startId = m_outerIndex[outer];
-  Index p = startId + m_innerNonZeros[outer];
-  while ( (p > startId) && (m_data.index(p-1) > inner) )
-  {
-    m_data.index(p) = m_data.index(p-1);
-    m_data.value(p) = m_data.value(p-1);
-    --p;
-  }
-  eigen_assert((p<=startId || m_data.index(p-1)!=inner) && "you cannot insert an element that already exists, you must call coeffRef to this end");
-
-  m_innerNonZeros[outer]++;
-
-  m_data.index(p) = inner;
-  return (m_data.value(p) = Scalar(0));
-}
-
-template<typename _Scalar, int _Options, typename _StorageIndex>
-EIGEN_DONT_INLINE typename SparseMatrix<_Scalar,_Options,_StorageIndex>::Scalar& SparseMatrix<_Scalar,_Options,_StorageIndex>::insertCompressed(Index row, Index col)
-{
-  eigen_assert(isCompressed());
-
-  const Index outer = IsRowMajor ? row : col;
-  const Index inner = IsRowMajor ? col : row;
-
-  Index previousOuter = outer;
-  if (m_outerIndex[outer+1]==0)
-  {
-    // we start a new inner vector
-    while (previousOuter>=0 && m_outerIndex[previousOuter]==0)
-    {
-      m_outerIndex[previousOuter] = convert_index(m_data.size());
-      --previousOuter;
-    }
-    m_outerIndex[outer+1] = m_outerIndex[outer];
-  }
-
-  // here we have to handle the tricky case where the outerIndex array
-  // starts with: [ 0 0 0 0 0 1 ...] and we are inserted in, e.g.,
-  // the 2nd inner vector...
-  bool isLastVec = (!(previousOuter==-1 && m_data.size()!=0))
-                && (std::size_t(m_outerIndex[outer+1]) == m_data.size());
-
-  std::size_t startId = m_outerIndex[outer];
-  // FIXME let's make sure sizeof(long int) == sizeof(std::size_t)
-  std::size_t p = m_outerIndex[outer+1];
-  ++m_outerIndex[outer+1];
-
-  double reallocRatio = 1;
-  if (m_data.allocatedSize()<=m_data.size())
-  {
-    // if there is no preallocated memory, let's reserve a minimum of 32 elements
-    if (m_data.size()==0)
-    {
-      m_data.reserve(32);
-    }
-    else
-    {
-      // we need to reallocate the data, to reduce multiple reallocations
-      // we use a smart resize algorithm based on the current filling ratio
-      // in addition, we use double to avoid integers overflows
-      double nnzEstimate = double(m_outerIndex[outer])*double(m_outerSize)/double(outer+1);
-      reallocRatio = (nnzEstimate-double(m_data.size()))/double(m_data.size());
-      // furthermore we bound the realloc ratio to:
-      //   1) reduce multiple minor realloc when the matrix is almost filled
-      //   2) avoid to allocate too much memory when the matrix is almost empty
-      reallocRatio = (std::min)((std::max)(reallocRatio,1.5),8.);
-    }
-  }
-  m_data.resize(m_data.size()+1,reallocRatio);
-
-  if (!isLastVec)
-  {
-    if (previousOuter==-1)
-    {
-      // oops wrong guess.
-      // let's correct the outer offsets
-      for (Index k=0; k<=(outer+1); ++k)
-        m_outerIndex[k] = 0;
-      Index k=outer+1;
-      while(m_outerIndex[k]==0)
-        m_outerIndex[k++] = 1;
-      while (k<=m_outerSize && m_outerIndex[k]!=0)
-        m_outerIndex[k++]++;
-      p = 0;
-      --k;
-      k = m_outerIndex[k]-1;
-      while (k>0)
-      {
-        m_data.index(k) = m_data.index(k-1);
-        m_data.value(k) = m_data.value(k-1);
-        k--;
-      }
-    }
-    else
-    {
-      // we are not inserting into the last inner vec
-      // update outer indices:
-      Index j = outer+2;
-      while (j<=m_outerSize && m_outerIndex[j]!=0)
-        m_outerIndex[j++]++;
-      --j;
-      // shift data of last vecs:
-      Index k = m_outerIndex[j]-1;
-      while (k>=Index(p))
-      {
-        m_data.index(k) = m_data.index(k-1);
-        m_data.value(k) = m_data.value(k-1);
-        k--;
-      }
-    }
-  }
-
-  while ( (p > startId) && (m_data.index(p-1) > inner) )
-  {
-    m_data.index(p) = m_data.index(p-1);
-    m_data.value(p) = m_data.value(p-1);
-    --p;
-  }
-
-  m_data.index(p) = inner;
-  return (m_data.value(p) = Scalar(0));
-}
-
-namespace internal {
-
-template<typename _Scalar, int _Options, typename _StorageIndex>
-struct evaluator<SparseMatrix<_Scalar,_Options,_StorageIndex> >
-  : evaluator<SparseCompressedBase<SparseMatrix<_Scalar,_Options,_StorageIndex> > >
-{
-  typedef evaluator<SparseCompressedBase<SparseMatrix<_Scalar,_Options,_StorageIndex> > > Base;
-  typedef SparseMatrix<_Scalar,_Options,_StorageIndex> SparseMatrixType;
-  evaluator() : Base() {}
-  explicit evaluator(const SparseMatrixType &mat) : Base(mat) {}
-};
-
-}
-
-} // end namespace Eigen
-
-#endif // EIGEN_SPARSEMATRIX_H