sequenzo 0.1.18__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (357) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +157 -157
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-39-darwin.so +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/hierarchical_clustering.py +107 -5
  6. sequenzo/define_sequence_data.py +10 -1
  7. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  8. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +157 -157
  9. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-39-darwin.so +0 -0
  10. sequenzo/dissimilarity_measures/utils/seqconc.c +157 -157
  11. sequenzo/dissimilarity_measures/utils/seqconc.cpython-39-darwin.so +0 -0
  12. sequenzo/dissimilarity_measures/utils/seqdss.c +157 -157
  13. sequenzo/dissimilarity_measures/utils/seqdss.cpython-39-darwin.so +0 -0
  14. sequenzo/dissimilarity_measures/utils/seqdur.c +157 -157
  15. sequenzo/dissimilarity_measures/utils/seqdur.cpython-39-darwin.so +0 -0
  16. sequenzo/dissimilarity_measures/utils/seqlength.c +157 -157
  17. sequenzo/dissimilarity_measures/utils/seqlength.cpython-39-darwin.so +0 -0
  18. sequenzo/multidomain/cat.py +0 -53
  19. sequenzo/multidomain/idcd.py +0 -1
  20. sequenzo/openmp_setup.py +233 -0
  21. sequenzo/visualization/plot_transition_matrix.py +21 -22
  22. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/METADATA +43 -10
  23. sequenzo-0.1.19.dist-info/RECORD +215 -0
  24. sequenzo/dissimilarity_measures/setup.py +0 -35
  25. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  26. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  27. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  28. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  29. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  167. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  168. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  169. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  170. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  171. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  172. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  173. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  174. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  175. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  176. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  177. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  178. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  179. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  180. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  181. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  182. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  183. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  184. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  185. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  186. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  187. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  188. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  189. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  190. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  191. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  192. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  193. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  194. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  195. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  196. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  197. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  198. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  199. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  200. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  201. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  202. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  203. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  204. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  205. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  206. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  207. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  208. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  209. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  210. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  211. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  212. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  213. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  214. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  215. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  216. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  217. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  218. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  219. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  220. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  221. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  222. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  223. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  224. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  225. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  226. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  354. sequenzo-0.1.18.dist-info/RECORD +0 -544
  355. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  356. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  357. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,544 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Mehdi Goli Codeplay Software Ltd.
5
- // Ralph Potter Codeplay Software Ltd.
6
- // Luke Iwanski Codeplay Software Ltd.
7
- // Contact: <eigen@codeplay.com>
8
- // Copyright (C) 2016 Benoit Steiner <benoit.steiner.goog@gmail.com>
9
-
10
- //
11
- // This Source Code Form is subject to the terms of the Mozilla
12
- // Public License v. 2.0. If a copy of the MPL was not distributed
13
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
14
-
15
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_CONVOLUTION_SYCL_H
16
- #define EIGEN_CXX11_TENSOR_TENSOR_CONVOLUTION_SYCL_H
17
-
18
- namespace Eigen {
19
-
20
- /** \class TensorConvolution
21
- * \ingroup CXX11_Tensor_Module
22
- *
23
- * \brief Tensor convolution class.
24
- *
25
- *
26
- */
27
-
28
- enum class convolution_type { CONV1D, CONV2D, CONV3D };
29
- template <typename Evaluator, typename CoeffReturnType, typename KernelType, typename Index, typename InputDims,
30
- typename Kernel_accessor, typename Buffer_accessor, convolution_type Conv_Dim>
31
- struct EigenConvolutionKernel;
32
- template <typename Evaluator, typename CoeffReturnType, typename KernelType, typename Index, typename InputDims,
33
- typename Kernel_accessor, typename Buffer_accessor>
34
- struct EigenConvolutionKernel<Evaluator, CoeffReturnType, KernelType, Index, InputDims, Kernel_accessor,
35
- Buffer_accessor, convolution_type::CONV1D> {
36
- typedef cl::sycl::accessor<CoeffReturnType, 1, cl::sycl::access::mode::read_write, cl::sycl::access::target::local>
37
- Local_accessor;
38
- Local_accessor local_acc;
39
- Evaluator device_evaluator;
40
- Kernel_accessor kernel_filter;
41
- Buffer_accessor buffer_acc;
42
- internal::IndexMapper<Index, InputDims, 1, Evaluator::Layout> indexMapper;
43
- const size_t kernelSize;
44
- const cl::sycl::range<2> input_range;
45
- EigenConvolutionKernel(Local_accessor local_acc_, Evaluator device_evaluator_, Kernel_accessor kernel_filter_,
46
- Buffer_accessor buffer_acc_,
47
- internal::IndexMapper<Index, InputDims, 1, Evaluator::Layout> indexMapper_,
48
- const size_t kernelSize_, const cl::sycl::range<2> input_range_)
49
- : local_acc(local_acc_),
50
- device_evaluator(device_evaluator_),
51
- kernel_filter(kernel_filter_),
52
- buffer_acc(buffer_acc_),
53
- indexMapper(indexMapper_),
54
- kernelSize(kernelSize_),
55
- input_range(input_range_) {}
56
-
57
- template <typename BooleanDim2>
58
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE bool boundary_check(const BooleanDim2 boolean_check) {
59
- return (boolean_check[0] && boolean_check[1]);
60
- }
61
- void operator()(cl::sycl::nd_item<2> itemID) {
62
- auto buffer_ptr = buffer_acc.get_pointer();
63
- auto kernel_ptr = kernel_filter.get_pointer();
64
- // the required row to be calculated for the for each plane in shered memory
65
- const size_t num_input = (itemID.get_local_range()[0] + kernelSize - 1);
66
- const size_t plane_kernel_offset = itemID.get_local_id(1) * num_input;
67
- const size_t input_offset = itemID.get_group(0) * itemID.get_local_range()[0];
68
- const size_t plane_tensor_offset = indexMapper.mapGpuInputPlaneToTensorInputOffset(itemID.get_global_id(1));
69
- /// fill the shared memory
70
- for (size_t i = itemID.get_local_id(0); i < num_input; i += itemID.get_local_range()[0]) {
71
- const size_t local_index = i + plane_kernel_offset;
72
- const size_t tensor_index =
73
- plane_tensor_offset + indexMapper.mapGpuInputKernelToTensorInputOffset(i + input_offset);
74
-
75
- local_acc[local_index] =
76
- (((i + input_offset) < (input_range[0] + kernelSize - 1)) && itemID.get_global_id(1) < input_range[1])
77
- ? device_evaluator.coeff(tensor_index)
78
- : CoeffReturnType(0);
79
- }
80
-
81
- itemID.barrier(cl::sycl::access::fence_space::local_space);
82
-
83
- // calculate the convolution // output start x
84
- const size_t first_output_start = itemID.get_group(0) * (itemID.get_local_range()[0]);
85
- if (boundary_check(itemID.get_global_id() < input_range)) {
86
- CoeffReturnType result = static_cast<CoeffReturnType>(0);
87
- const size_t index = plane_kernel_offset + itemID.get_local_id(0);
88
- for (size_t k = 0; k < kernelSize; ++k) {
89
- result += (local_acc[k + index] * kernel_ptr[k]);
90
- }
91
- const size_t tensor_index =
92
- indexMapper.mapGpuOutputPlaneToTensorOutputOffset(itemID.get_global_id(1)) +
93
- indexMapper.mapGpuOutputKernelToTensorOutputOffset(itemID.get_local_id(0) + first_output_start);
94
- buffer_ptr[tensor_index] = result;
95
- }
96
- }
97
- };
98
-
99
- template <typename Evaluator, typename CoeffReturnType, typename KernelType, typename Index, typename InputDims,
100
- typename Kernel_accessor, typename Buffer_accessor>
101
- struct EigenConvolutionKernel<Evaluator, CoeffReturnType, KernelType, Index, InputDims, Kernel_accessor,
102
- Buffer_accessor, convolution_type::CONV2D> {
103
- typedef cl::sycl::accessor<CoeffReturnType, 1, cl::sycl::access::mode::read_write, cl::sycl::access::target::local>
104
- Local_accessor;
105
- Local_accessor local_acc;
106
- Evaluator device_evaluator;
107
- Kernel_accessor kernel_filter;
108
- Buffer_accessor buffer_acc;
109
- internal::IndexMapper<Index, InputDims, 2, Evaluator::Layout> indexMapper;
110
- const cl::sycl::range<2> kernel_size;
111
- const cl::sycl::range<3> input_range;
112
- EigenConvolutionKernel(Local_accessor local_acc_, Evaluator device_evaluator_, Kernel_accessor kernel_filter_,
113
- Buffer_accessor buffer_acc_,
114
- internal::IndexMapper<Index, InputDims, 2, Evaluator::Layout> indexMapper_,
115
- const cl::sycl::range<2> kernel_size_, const cl::sycl::range<3> input_range_)
116
- : local_acc(local_acc_),
117
- device_evaluator(device_evaluator_),
118
- kernel_filter(kernel_filter_),
119
- buffer_acc(buffer_acc_),
120
- indexMapper(indexMapper_),
121
- kernel_size(kernel_size_),
122
- input_range(input_range_) {}
123
- template <typename BooleanDim3>
124
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE bool boundary_check(const BooleanDim3 boolean_check) {
125
- return (boolean_check[0] && boolean_check[1] && boolean_check[2]);
126
- }
127
-
128
- void operator()(cl::sycl::nd_item<3> itemID) {
129
- auto buffer_ptr = buffer_acc.get_pointer();
130
- auto kernel_ptr = kernel_filter.get_pointer();
131
- // the required row to be calculated for the for each plane in shered memory
132
- const auto num_input = cl::sycl::range<2>{
133
- (cl::sycl::range<2>(itemID.get_local_range()[0], itemID.get_local_range()[1]) + kernel_size - 1)};
134
-
135
- const size_t plane_input_offset = indexMapper.mapGpuInputPlaneToTensorInputOffset(itemID.get_global_id(2));
136
- const size_t plane_kernel_offset = itemID.get_local_id(2) * num_input[1];
137
-
138
- const auto input_offset = cl::sycl::range<2>{itemID.get_group(0) * itemID.get_local_range()[0],
139
- itemID.get_group(1) * itemID.get_local_range()[1]};
140
-
141
- // fill the local memory
142
- bool in_range_dim2 = itemID.get_global_id(2) < input_range[2];
143
- for (size_t j = itemID.get_local_id(1); j < num_input[1]; j += itemID.get_local_range()[1]) {
144
- const size_t local_input_offset = num_input[0] * (j + plane_kernel_offset);
145
- bool in_range_dim1 = ((j + input_offset[1]) < (input_range[1] + kernel_size[1] - 1));
146
- for (size_t i = itemID.get_local_id(0); i < num_input[0]; i += itemID.get_local_range()[0]) {
147
- const size_t local_index = i + local_input_offset;
148
- const size_t tensor_index = plane_input_offset + indexMapper.mapGpuInputKernelToTensorInputOffset(
149
- i + input_offset[0], j + input_offset[1]);
150
- local_acc[local_index] = (((i + input_offset[0]) < (input_range[0] + kernel_size[0] - 1)) &&
151
- in_range_dim1 && in_range_dim2)
152
- ? device_evaluator.coeff(tensor_index)
153
- : CoeffReturnType(0);
154
- }
155
- }
156
-
157
- itemID.barrier(cl::sycl::access::fence_space::local_space);
158
-
159
- // output offset start for each thread
160
- const auto output_offset = cl::sycl::range<2>{itemID.get_group(0) * itemID.get_local_range()[0],
161
- itemID.get_group(1) * itemID.get_local_range()[1]};
162
-
163
- if (boundary_check(itemID.get_global_id() < input_range)) {
164
- CoeffReturnType result = static_cast<CoeffReturnType>(0);
165
-
166
- for (size_t j = 0; j < kernel_size[1]; j++) {
167
- size_t kernel_offset = kernel_size[0] * j;
168
- const size_t index =
169
- (num_input[0] * (plane_kernel_offset + j + itemID.get_local_id(1))) + itemID.get_local_id(0);
170
- for (size_t i = 0; i < kernel_size[0]; i++) {
171
- result += (local_acc[i + index] * kernel_ptr[i + kernel_offset]);
172
- }
173
- }
174
- const size_t tensor_index =
175
- indexMapper.mapGpuOutputPlaneToTensorOutputOffset(itemID.get_global_id(2)) +
176
- indexMapper.mapGpuOutputKernelToTensorOutputOffset(itemID.get_local_id(0) + output_offset[0],
177
- itemID.get_local_id(1) + output_offset[1]);
178
-
179
- buffer_ptr[tensor_index] = result;
180
- }
181
- }
182
- };
183
-
184
- template <typename Evaluator, typename CoeffReturnType, typename KernelType, typename Index, typename InputDims,
185
- typename Kernel_accessor, typename Buffer_accessor>
186
- struct EigenConvolutionKernel<Evaluator, CoeffReturnType, KernelType, Index, InputDims, Kernel_accessor,
187
- Buffer_accessor, convolution_type::CONV3D> {
188
- typedef cl::sycl::accessor<CoeffReturnType, 1, cl::sycl::access::mode::read_write, cl::sycl::access::target::local>
189
- Local_accessor;
190
- Local_accessor local_acc;
191
- Evaluator device_evaluator;
192
- Kernel_accessor kernel_filter;
193
- Buffer_accessor buffer_acc;
194
- internal::IndexMapper<Index, InputDims, 3, Evaluator::Layout> indexMapper;
195
- const cl::sycl::range<3> kernel_size;
196
- const cl::sycl::range<3> input_range;
197
- const size_t numP;
198
-
199
- EigenConvolutionKernel(Local_accessor local_acc_, Evaluator device_evaluator_, Kernel_accessor kernel_filter_,
200
- Buffer_accessor buffer_acc_,
201
- internal::IndexMapper<Index, InputDims, 3, Evaluator::Layout> indexMapper_,
202
- const cl::sycl::range<3> kernel_size_, const cl::sycl::range<3> input_range_,
203
- const size_t numP_)
204
- : local_acc(local_acc_),
205
- device_evaluator(device_evaluator_),
206
- kernel_filter(kernel_filter_),
207
- buffer_acc(buffer_acc_),
208
- indexMapper(indexMapper_),
209
- kernel_size(kernel_size_),
210
- input_range(input_range_),
211
- numP(numP_) {}
212
- template <typename BooleanDim3>
213
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE bool boundary_check(const BooleanDim3 boolean_check) {
214
- return (boolean_check[0] && boolean_check[1] && boolean_check[2]);
215
- }
216
- void operator()(cl::sycl::nd_item<3> itemID) {
217
- auto buffer_ptr = buffer_acc.get_pointer();
218
- auto kernel_ptr = kernel_filter.get_pointer();
219
- const auto num_input = cl::sycl::range<3>{itemID.get_local_range() + kernel_size - 1};
220
-
221
- const auto input_offset = cl::sycl::range<3>{itemID.get_group().get_id() * itemID.get_local_range()};
222
-
223
- const auto output_offset =
224
- cl::sycl::range<3>{itemID.get_group().get_id() * itemID.get_local_range() + itemID.get_local_id()};
225
-
226
- for (size_t p = 0; p < numP; p++) {
227
- /// fill the shared memory
228
- const size_t plane_input_offset = indexMapper.mapGpuInputPlaneToTensorInputOffset(p);
229
- for (size_t k = itemID.get_local_id(2); k < num_input[2]; k += itemID.get_local_range()[2]) {
230
- size_t local_index_dim2 = num_input[0] * num_input[1] * k;
231
- bool cond_k_dim = (k + input_offset[2] < (input_range[2] + kernel_size[2] - 1));
232
- for (size_t j = itemID.get_local_id(1); j < num_input[1]; j += itemID.get_local_range()[1]) {
233
- bool cond_j_dim = cond_k_dim && (j + input_offset[1] < (input_range[1] + kernel_size[1] - 1));
234
- size_t local_index_dim1 = (num_input[0] * j) + local_index_dim2;
235
- for (size_t i = itemID.get_local_id(0); i < num_input[0]; i += itemID.get_local_range()[0]) {
236
- bool conds = cond_j_dim && (i + input_offset[0] < (input_range[0] + kernel_size[0] - 1));
237
- const size_t local_index = local_index_dim1 + i;
238
- const size_t tensor_index =
239
- plane_input_offset + indexMapper.mapGpuInputKernelToTensorInputOffset(
240
- i + input_offset[0], j + input_offset[1], k + input_offset[2]);
241
- local_acc[local_index] = conds ? device_evaluator.coeff(tensor_index) : CoeffReturnType(0);
242
- }
243
- }
244
- }
245
- itemID.barrier(cl::sycl::access::fence_space::local_space);
246
-
247
- // calculate the convolution
248
-
249
- if (boundary_check(itemID.get_global_id() < input_range)) {
250
- CoeffReturnType result = static_cast<CoeffReturnType>(0);
251
- for (size_t k = 0; k < kernel_size[2]; k++) {
252
- for (size_t j = 0; j < kernel_size[1]; j++) {
253
- for (size_t i = 0; i < kernel_size[0]; i++) {
254
- const size_t kernel_index = i + kernel_size[0] * (j + kernel_size[1] * k);
255
- const size_t local_index =
256
- ((i + itemID.get_local_id(0)) +
257
- num_input[0] * ((j + itemID.get_local_id(1)) + num_input[1] * (k + itemID.get_local_id(2))));
258
-
259
- result += (local_acc[local_index] * kernel_ptr[kernel_index]);
260
- }
261
- }
262
- }
263
- const size_t tensor_index =
264
- indexMapper.mapGpuOutputPlaneToTensorOutputOffset(p) +
265
- indexMapper.mapGpuOutputKernelToTensorOutputOffset(output_offset[0], output_offset[1], output_offset[2]);
266
- buffer_ptr[tensor_index] = result;
267
- }
268
-
269
- itemID.barrier(cl::sycl::access::fence_space::local_space);
270
- }
271
- }
272
- };
273
-
274
- template <typename Indices, typename InputArgType, typename KernelArgType>
275
- struct TensorEvaluator<const TensorConvolutionOp<Indices, InputArgType, KernelArgType>, Eigen::SyclDevice> {
276
- typedef TensorConvolutionOp<Indices, InputArgType, KernelArgType> XprType;
277
-
278
- static const int NumDims =
279
- internal::array_size<typename TensorEvaluator<InputArgType, Eigen::SyclDevice>::Dimensions>::value;
280
- static const int NumKernelDims = internal::array_size<Indices>::value;
281
- typedef typename XprType::Index Index;
282
- typedef DSizes<Index, NumDims> Dimensions;
283
- typedef typename TensorEvaluator<KernelArgType, Eigen::SyclDevice>::Dimensions KernelDimensions;
284
- typedef const Eigen::SyclDevice Device;
285
- typedef typename XprType::CoeffReturnType CoeffReturnType;
286
- typedef typename PacketType<CoeffReturnType, Eigen::SyclDevice>::type PacketReturnType;
287
- typedef typename InputArgType::Scalar Scalar;
288
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
289
- typedef StorageMemory<CoeffReturnType, Eigen::SyclDevice> Storage;
290
- typedef typename Storage::Type EvaluatorPointerType;
291
- typedef StorageMemory<const CoeffReturnType, Eigen::SyclDevice> KernelStorage;
292
-
293
- enum {
294
- IsAligned = TensorEvaluator<InputArgType, Eigen::SyclDevice>::IsAligned &
295
- TensorEvaluator<KernelArgType, Eigen::SyclDevice>::IsAligned,
296
- PacketAccess = false,
297
- BlockAccess = false,
298
- PreferBlockAccess = false,
299
- Layout = TensorEvaluator<InputArgType, Eigen::SyclDevice>::Layout,
300
- CoordAccess = false, // to be implemented
301
- RawAccess = false
302
- };
303
-
304
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
305
- typedef internal::TensorBlockNotImplemented TensorBlock;
306
- //===--------------------------------------------------------------------===//
307
-
308
- TensorEvaluator(const XprType &op, const Eigen::SyclDevice &device)
309
- : m_inputImpl(op.inputExpression(), device),
310
- m_kernelArg(op.kernelExpression()),
311
- m_kernelImpl(op.kernelExpression(), device),
312
- m_indices(op.indices()),
313
- m_buf(NULL),
314
- m_kernel(NULL),
315
- m_local_kernel(false),
316
- m_device(device) {
317
- EIGEN_STATIC_ASSERT((static_cast<int>(TensorEvaluator<InputArgType, Eigen::SyclDevice>::Layout) ==
318
- static_cast<int>(TensorEvaluator<KernelArgType, Eigen::SyclDevice>::Layout)),
319
- YOU_MADE_A_PROGRAMMING_MISTAKE);
320
-
321
- const typename TensorEvaluator<InputArgType, Eigen::SyclDevice>::Dimensions &input_dims = m_inputImpl.dimensions();
322
- const typename TensorEvaluator<KernelArgType, Eigen::SyclDevice>::Dimensions &kernel_dims =
323
- m_kernelImpl.dimensions();
324
-
325
- m_dimensions = m_inputImpl.dimensions();
326
- for (int i = 0; i < NumKernelDims; ++i) {
327
- const Index index = op.indices()[i];
328
- const Index input_dim = input_dims[index];
329
- const Index kernel_dim = kernel_dims[i];
330
- const Index result_dim = input_dim - kernel_dim + 1;
331
- m_dimensions[index] = result_dim;
332
- }
333
- }
334
-
335
- EIGEN_DEVICE_FUNC const Dimensions &dimensions() const { return m_dimensions; }
336
-
337
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data) {
338
- preloadKernel();
339
- m_inputImpl.evalSubExprsIfNeeded(NULL);
340
- if (data) {
341
- executeEval(data);
342
- return false;
343
- } else {
344
- m_buf = (EvaluatorPointerType)m_device.get(
345
- (Scalar *)m_device.allocate_temp(dimensions().TotalSize() * sizeof(Scalar)));
346
- executeEval(m_buf);
347
- return true;
348
- }
349
- }
350
-
351
- EIGEN_STRONG_INLINE void cleanup() {
352
- m_inputImpl.cleanup();
353
- if (m_buf) {
354
- m_device.deallocate_temp(m_buf);
355
- m_buf = NULL;
356
- }
357
- if (m_local_kernel) {
358
- m_device.deallocate_temp(m_kernel);
359
- m_local_kernel = false;
360
- }
361
- m_kernel = NULL;
362
- }
363
- /// used by sycl in order to build the sycl buffer
364
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Device &device() const { return m_device; }
365
- /// used by sycl in order to build the sycl buffer
366
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE EvaluatorPointerType data() const { return m_buf; }
367
-
368
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void preloadKernel() {
369
- // Don't make a local copy of the kernel unless we have to (i.e. it's an
370
- // expression that needs to be evaluated)
371
- typename KernelStorage::Type in_place = m_kernelImpl.data();
372
- if (in_place) {
373
- m_kernel = in_place;
374
- m_local_kernel = false;
375
- } else {
376
- ptrdiff_t kernel_sz = m_kernelImpl.dimensions().TotalSize() * sizeof(Scalar);
377
- EvaluatorPointerType local = (EvaluatorPointerType)m_device.get((Scalar *)m_device.allocate_temp(kernel_sz));
378
- typedef TensorEvalToOp<const KernelArgType> EvalTo;
379
- EvalTo evalToTmp(m_device.get(local), m_kernelArg);
380
- const bool PacketAccess = internal::IsVectorizable<Eigen::SyclDevice, KernelArgType>::value;
381
- internal::TensorExecutor<const EvalTo, Eigen::SyclDevice, PacketAccess>::run(evalToTmp, m_device);
382
- m_kernel = local;
383
- m_local_kernel = true;
384
- }
385
- }
386
-
387
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void executeEval(EvaluatorPointerType data) const {
388
- typedef TensorEvaluator<InputArgType, Eigen::SyclDevice> InputEvaluator;
389
- typedef typename InputEvaluator::Dimensions InputDims;
390
- switch (NumKernelDims) {
391
- case 1: {
392
- const size_t numX = dimensions()[m_indices[0]];
393
- const size_t numP = dimensions().TotalSize() / numX;
394
- const auto input_dim = std::array<size_t, 2>{numX, numP};
395
- auto global_range = cl::sycl::range<2>{};
396
- auto local_range = cl::sycl::range<2>{};
397
- const size_t kernel_size = m_kernelImpl.dimensions().TotalSize();
398
-
399
- m_device.parallel_for_setup(input_dim, global_range, local_range);
400
- const size_t local_memory_size = (local_range[0] + kernel_size - 1) * (local_range[1]);
401
- gpu_assert(static_cast<unsigned long>(local_memory_size) <= m_device.sharedMemPerBlock());
402
- const array<Index, 1> indices{{m_indices[0]}};
403
- const array<Index, 1> kernel_dims{{m_kernelImpl.dimensions()[0]}};
404
- internal::IndexMapper<Index, InputDims, 1, Layout> indexMapper(m_inputImpl.dimensions(), kernel_dims, indices);
405
-
406
- typedef EigenConvolutionKernel<InputEvaluator, CoeffReturnType, Scalar, Index, InputDims,
407
- typename KernelStorage::Type, EvaluatorPointerType, convolution_type::CONV1D>
408
- ConvKernel;
409
-
410
- m_device.template binary_kernel_launcher<CoeffReturnType, ConvKernel>(
411
- m_inputImpl, m_kernel, data, cl::sycl::nd_range<2>(global_range, local_range), local_memory_size,
412
- indexMapper, kernel_size, cl::sycl::range<2>(input_dim[0], input_dim[1]));
413
- break;
414
- }
415
-
416
- case 2: {
417
- auto kernel_index = std::array<size_t, 2>{static_cast<int>(Layout) == static_cast<int>(ColMajor) ? 0 : 1,
418
- static_cast<int>(Layout) == static_cast<int>(ColMajor) ? 1 : 0};
419
- auto kernel_size = cl::sycl::range<2>{(size_t)m_kernelImpl.dimensions()[kernel_index[0]],
420
- (size_t)m_kernelImpl.dimensions()[kernel_index[1]]};
421
- const size_t numX = dimensions()[m_indices[kernel_index[0]]];
422
- const size_t numY = dimensions()[m_indices[kernel_index[1]]];
423
- const size_t numP = dimensions().TotalSize() / (numX * numY);
424
- auto input_dim = std::array<size_t, 3>{numX, numY, numP};
425
-
426
- auto global_range = cl::sycl::range<3>{};
427
- auto local_range = cl::sycl::range<3>{};
428
-
429
- m_device.parallel_for_setup(input_dim, global_range, local_range);
430
-
431
- const size_t local_memory_size =
432
- (local_range[0] + kernel_size[0] - 1) * (local_range[1] + kernel_size[1] - 1) * local_range[2];
433
- gpu_assert(static_cast<unsigned long>(local_memory_size) <= m_device.sharedMemPerBlock());
434
- const array<Index, 2> indices{{m_indices[kernel_index[0]], m_indices[kernel_index[1]]}};
435
- const array<Index, 2> kernel_dims{
436
- {m_kernelImpl.dimensions()[kernel_index[0]], m_kernelImpl.dimensions()[kernel_index[1]]}};
437
- internal::IndexMapper<Index, InputDims, 2, Layout> indexMapper(m_inputImpl.dimensions(), kernel_dims, indices);
438
- typedef EigenConvolutionKernel<InputEvaluator, CoeffReturnType, Scalar, Index, InputDims,
439
- typename KernelStorage::Type, EvaluatorPointerType, convolution_type::CONV2D>
440
- ConvKernel;
441
- m_device.template binary_kernel_launcher<CoeffReturnType, ConvKernel>(
442
- m_inputImpl, m_kernel, data, cl::sycl::nd_range<3>(global_range, local_range), local_memory_size,
443
- indexMapper, kernel_size, cl::sycl::range<3>{input_dim[0], input_dim[1], input_dim[2]});
444
- break;
445
- }
446
-
447
- case 3: {
448
- auto kernel_index = std::array<size_t, 3>{static_cast<int>(Layout) == static_cast<int>(ColMajor) ? 0 : 2,
449
- static_cast<int>(Layout) == static_cast<int>(ColMajor) ? 1 : 1,
450
- static_cast<int>(Layout) == static_cast<int>(ColMajor) ? 2 : 0};
451
-
452
- auto kernel_size = cl::sycl::range<3>{(size_t)m_kernelImpl.dimensions()[kernel_index[0]],
453
- (size_t)m_kernelImpl.dimensions()[kernel_index[1]],
454
- (size_t)m_kernelImpl.dimensions()[kernel_index[2]]};
455
-
456
- const size_t numX = dimensions()[m_indices[kernel_index[0]]];
457
- const size_t numY = dimensions()[m_indices[kernel_index[1]]];
458
- const size_t numZ = dimensions()[m_indices[kernel_index[2]]];
459
- auto input_dim = std::array<size_t, 3>{numX, numY, numZ};
460
- const size_t numP = dimensions().TotalSize() / (numX * numY * numZ);
461
-
462
- const array<Index, 3> indices{
463
- {m_indices[kernel_index[0]], m_indices[kernel_index[1]], m_indices[kernel_index[2]]}};
464
- const array<Index, 3> kernel_dims{{m_kernelImpl.dimensions()[kernel_index[0]],
465
- m_kernelImpl.dimensions()[kernel_index[1]],
466
- m_kernelImpl.dimensions()[kernel_index[2]]}};
467
-
468
- internal::IndexMapper<Index, InputDims, 3, Layout> indexMapper(m_inputImpl.dimensions(), kernel_dims, indices);
469
-
470
- auto global_range = cl::sycl::range<3>{};
471
- auto local_range = cl::sycl::range<3>{};
472
-
473
- m_device.parallel_for_setup(input_dim, global_range, local_range);
474
- auto local_memory_range = (local_range + kernel_size - 1);
475
- const size_t local_memory_size = local_memory_range[0] * local_memory_range[1] * local_memory_range[2];
476
-
477
- gpu_assert(static_cast<unsigned long>(local_memory_size) <= m_device.sharedMemPerBlock());
478
- typedef EigenConvolutionKernel<InputEvaluator, CoeffReturnType, Scalar, Index, InputDims,
479
- typename KernelStorage::Type, EvaluatorPointerType, convolution_type::CONV3D>
480
- ConvKernel;
481
- m_device.template binary_kernel_launcher<CoeffReturnType, ConvKernel>(
482
- m_inputImpl, m_kernel, data, cl::sycl::nd_range<3>(global_range, local_range), local_memory_size,
483
- indexMapper, kernel_size, cl::sycl::range<3>(input_dim[0], input_dim[1], input_dim[2]), numP);
484
- break;
485
- }
486
-
487
- default: {
488
- EIGEN_STATIC_ASSERT((NumKernelDims >= 1 && NumKernelDims <= 3),
489
- THIS_METHOD_IS_ONLY_FOR_OBJECTS_OF_A_SPECIFIC_SIZE);
490
- }
491
- }
492
- }
493
-
494
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const {
495
- eigen_assert(m_buf != NULL);
496
- eigen_assert(index < m_dimensions.TotalSize());
497
- return m_buf[index];
498
- }
499
-
500
- template <int LoadMode>
501
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(const Index index) const {
502
- eigen_assert(m_buf != NULL);
503
- eigen_assert(index < m_dimensions.TotalSize());
504
- return internal::ploadt<PacketReturnType, LoadMode>(m_buf + index);
505
- }
506
-
507
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
508
- // TODO(rmlarsen): FIXME: For now, this is just a copy of the CPU cost
509
- // model.
510
- const double kernel_size = m_kernelImpl.dimensions().TotalSize();
511
- // We ignore the use of fused multiply-add.
512
- const double convolve_compute_cost = TensorOpCost::AddCost<Scalar>() + TensorOpCost::MulCost<Scalar>();
513
- const double firstIndex_compute_cost =
514
- NumDims *
515
- (2 * TensorOpCost::AddCost<Index>() + 2 * TensorOpCost::MulCost<Index>() + TensorOpCost::DivCost<Index>());
516
- return TensorOpCost(0, 0, firstIndex_compute_cost, vectorized, PacketSize) +
517
- kernel_size * (m_inputImpl.costPerCoeff(vectorized) + m_kernelImpl.costPerCoeff(vectorized) +
518
- TensorOpCost(0, 0, convolve_compute_cost, vectorized, PacketSize));
519
- }
520
- // binding placeholder accessors to a command group handler for SYCL
521
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
522
- m_kernelImpl.bind(cgh);
523
- m_inputImpl.bind(cgh);
524
- m_buf.bind(cgh);
525
- m_kernel.bind(cgh);
526
- }
527
-
528
- private:
529
- // No assignment (copies are needed by the kernels)
530
- TensorEvaluator &operator=(const TensorEvaluator &);
531
- TensorEvaluator<InputArgType, Eigen::SyclDevice> m_inputImpl;
532
- KernelArgType m_kernelArg;
533
- TensorEvaluator<KernelArgType, Eigen::SyclDevice> m_kernelImpl;
534
- Indices m_indices;
535
- Dimensions m_dimensions;
536
- EvaluatorPointerType m_buf;
537
- typename KernelStorage::Type m_kernel;
538
- bool m_local_kernel;
539
- const Eigen::SyclDevice EIGEN_DEVICE_REF m_device;
540
- }; // namespace Eigen
541
-
542
- } // end namespace Eigen
543
-
544
- #endif // EIGEN_CXX11_TENSOR_TENSOR_CONVOLUTION_H