sequenzo 0.1.18__cp312-cp312-win_amd64.whl → 0.1.20__cp312-cp312-win_amd64.whl

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  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp312-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp312-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +108 -6
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp312-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  12. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp312-win_amd64.pyd +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  14. sequenzo/dissimilarity_measures/utils/seqconc.cp312-win_amd64.pyd +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  16. sequenzo/dissimilarity_measures/utils/seqdss.cp312-win_amd64.pyd +0 -0
  17. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  18. sequenzo/dissimilarity_measures/utils/seqdur.cp312-win_amd64.pyd +0 -0
  19. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  20. sequenzo/dissimilarity_measures/utils/seqlength.cp312-win_amd64.pyd +0 -0
  21. sequenzo/multidomain/cat.py +0 -53
  22. sequenzo/multidomain/dat.py +11 -3
  23. sequenzo/multidomain/idcd.py +0 -3
  24. sequenzo/multidomain/linked_polyad.py +0 -1
  25. sequenzo/openmp_setup.py +233 -0
  26. sequenzo/visualization/plot_transition_matrix.py +21 -22
  27. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
  28. sequenzo-0.1.20.dist-info/RECORD +272 -0
  29. sequenzo/dissimilarity_measures/setup.py +0 -35
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  172. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  173. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  174. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  175. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  176. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  177. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  178. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  179. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  180. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  181. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  182. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  183. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  184. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  185. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  186. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  187. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  188. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  189. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  190. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  191. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  192. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  197. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  198. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  199. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  200. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  201. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  202. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  203. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  206. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  207. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  208. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  209. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  210. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  211. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  212. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  213. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  214. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
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  398. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE +0 -0
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@@ -1,82 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_MISC_IMAGE_H
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- #define EIGEN_MISC_IMAGE_H
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-
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- namespace Eigen {
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-
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- namespace internal {
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-
17
- /** \class image_retval_base
18
- *
19
- */
20
- template<typename DecompositionType>
21
- struct traits<image_retval_base<DecompositionType> >
22
- {
23
- typedef typename DecompositionType::MatrixType MatrixType;
24
- typedef Matrix<
25
- typename MatrixType::Scalar,
26
- MatrixType::RowsAtCompileTime, // the image is a subspace of the destination space, whose
27
- // dimension is the number of rows of the original matrix
28
- Dynamic, // we don't know at compile time the dimension of the image (the rank)
29
- MatrixType::Options,
30
- MatrixType::MaxRowsAtCompileTime, // the image matrix will consist of columns from the original matrix,
31
- MatrixType::MaxColsAtCompileTime // so it has the same number of rows and at most as many columns.
32
- > ReturnType;
33
- };
34
-
35
- template<typename _DecompositionType> struct image_retval_base
36
- : public ReturnByValue<image_retval_base<_DecompositionType> >
37
- {
38
- typedef _DecompositionType DecompositionType;
39
- typedef typename DecompositionType::MatrixType MatrixType;
40
- typedef ReturnByValue<image_retval_base> Base;
41
-
42
- image_retval_base(const DecompositionType& dec, const MatrixType& originalMatrix)
43
- : m_dec(dec), m_rank(dec.rank()),
44
- m_cols(m_rank == 0 ? 1 : m_rank),
45
- m_originalMatrix(originalMatrix)
46
- {}
47
-
48
- inline Index rows() const { return m_dec.rows(); }
49
- inline Index cols() const { return m_cols; }
50
- inline Index rank() const { return m_rank; }
51
- inline const DecompositionType& dec() const { return m_dec; }
52
- inline const MatrixType& originalMatrix() const { return m_originalMatrix; }
53
-
54
- template<typename Dest> inline void evalTo(Dest& dst) const
55
- {
56
- static_cast<const image_retval<DecompositionType>*>(this)->evalTo(dst);
57
- }
58
-
59
- protected:
60
- const DecompositionType& m_dec;
61
- Index m_rank, m_cols;
62
- const MatrixType& m_originalMatrix;
63
- };
64
-
65
- } // end namespace internal
66
-
67
- #define EIGEN_MAKE_IMAGE_HELPERS(DecompositionType) \
68
- typedef typename DecompositionType::MatrixType MatrixType; \
69
- typedef typename MatrixType::Scalar Scalar; \
70
- typedef typename MatrixType::RealScalar RealScalar; \
71
- typedef Eigen::internal::image_retval_base<DecompositionType> Base; \
72
- using Base::dec; \
73
- using Base::originalMatrix; \
74
- using Base::rank; \
75
- using Base::rows; \
76
- using Base::cols; \
77
- image_retval(const DecompositionType& dec, const MatrixType& originalMatrix) \
78
- : Base(dec, originalMatrix) {}
79
-
80
- } // end namespace Eigen
81
-
82
- #endif // EIGEN_MISC_IMAGE_H
@@ -1,79 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_MISC_KERNEL_H
11
- #define EIGEN_MISC_KERNEL_H
12
-
13
- namespace Eigen {
14
-
15
- namespace internal {
16
-
17
- /** \class kernel_retval_base
18
- *
19
- */
20
- template<typename DecompositionType>
21
- struct traits<kernel_retval_base<DecompositionType> >
22
- {
23
- typedef typename DecompositionType::MatrixType MatrixType;
24
- typedef Matrix<
25
- typename MatrixType::Scalar,
26
- MatrixType::ColsAtCompileTime, // the number of rows in the "kernel matrix"
27
- // is the number of cols of the original matrix
28
- // so that the product "matrix * kernel = zero" makes sense
29
- Dynamic, // we don't know at compile-time the dimension of the kernel
30
- MatrixType::Options,
31
- MatrixType::MaxColsAtCompileTime, // see explanation for 2nd template parameter
32
- MatrixType::MaxColsAtCompileTime // the kernel is a subspace of the domain space,
33
- // whose dimension is the number of columns of the original matrix
34
- > ReturnType;
35
- };
36
-
37
- template<typename _DecompositionType> struct kernel_retval_base
38
- : public ReturnByValue<kernel_retval_base<_DecompositionType> >
39
- {
40
- typedef _DecompositionType DecompositionType;
41
- typedef ReturnByValue<kernel_retval_base> Base;
42
-
43
- explicit kernel_retval_base(const DecompositionType& dec)
44
- : m_dec(dec),
45
- m_rank(dec.rank()),
46
- m_cols(m_rank==dec.cols() ? 1 : dec.cols() - m_rank)
47
- {}
48
-
49
- inline Index rows() const { return m_dec.cols(); }
50
- inline Index cols() const { return m_cols; }
51
- inline Index rank() const { return m_rank; }
52
- inline const DecompositionType& dec() const { return m_dec; }
53
-
54
- template<typename Dest> inline void evalTo(Dest& dst) const
55
- {
56
- static_cast<const kernel_retval<DecompositionType>*>(this)->evalTo(dst);
57
- }
58
-
59
- protected:
60
- const DecompositionType& m_dec;
61
- Index m_rank, m_cols;
62
- };
63
-
64
- } // end namespace internal
65
-
66
- #define EIGEN_MAKE_KERNEL_HELPERS(DecompositionType) \
67
- typedef typename DecompositionType::MatrixType MatrixType; \
68
- typedef typename MatrixType::Scalar Scalar; \
69
- typedef typename MatrixType::RealScalar RealScalar; \
70
- typedef Eigen::internal::kernel_retval_base<DecompositionType> Base; \
71
- using Base::dec; \
72
- using Base::rank; \
73
- using Base::rows; \
74
- using Base::cols; \
75
- kernel_retval(const DecompositionType& dec) : Base(dec) {}
76
-
77
- } // end namespace Eigen
78
-
79
- #endif // EIGEN_MISC_KERNEL_H
@@ -1,55 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2009-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
5
- // Copyright (C) 2013-2016 Gael Guennebaud <gael.guennebaud@inria.fr>
6
- //
7
- // This Source Code Form is subject to the terms of the Mozilla
8
- // Public License v. 2.0. If a copy of the MPL was not distributed
9
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
-
11
- #ifndef EIGEN_REALSVD2X2_H
12
- #define EIGEN_REALSVD2X2_H
13
-
14
- namespace Eigen {
15
-
16
- namespace internal {
17
-
18
- template<typename MatrixType, typename RealScalar, typename Index>
19
- void real_2x2_jacobi_svd(const MatrixType& matrix, Index p, Index q,
20
- JacobiRotation<RealScalar> *j_left,
21
- JacobiRotation<RealScalar> *j_right)
22
- {
23
- using std::sqrt;
24
- using std::abs;
25
- Matrix<RealScalar,2,2> m;
26
- m << numext::real(matrix.coeff(p,p)), numext::real(matrix.coeff(p,q)),
27
- numext::real(matrix.coeff(q,p)), numext::real(matrix.coeff(q,q));
28
- JacobiRotation<RealScalar> rot1;
29
- RealScalar t = m.coeff(0,0) + m.coeff(1,1);
30
- RealScalar d = m.coeff(1,0) - m.coeff(0,1);
31
-
32
- if(abs(d) < (std::numeric_limits<RealScalar>::min)())
33
- {
34
- rot1.s() = RealScalar(0);
35
- rot1.c() = RealScalar(1);
36
- }
37
- else
38
- {
39
- // If d!=0, then t/d cannot overflow because the magnitude of the
40
- // entries forming d are not too small compared to the ones forming t.
41
- RealScalar u = t / d;
42
- RealScalar tmp = sqrt(RealScalar(1) + numext::abs2(u));
43
- rot1.s() = RealScalar(1) / tmp;
44
- rot1.c() = u / tmp;
45
- }
46
- m.applyOnTheLeft(0,1,rot1);
47
- j_right->makeJacobi(m,0,1);
48
- *j_left = rot1 * j_right->transpose();
49
- }
50
-
51
- } // end namespace internal
52
-
53
- } // end namespace Eigen
54
-
55
- #endif // EIGEN_REALSVD2X2_H
@@ -1,440 +0,0 @@
1
- #ifndef BLAS_H
2
- #define BLAS_H
3
-
4
- #ifdef __cplusplus
5
- extern "C"
6
- {
7
- #endif
8
-
9
- #define BLASFUNC(FUNC) FUNC##_
10
-
11
- #ifdef __WIN64__
12
- typedef long long BLASLONG;
13
- typedef unsigned long long BLASULONG;
14
- #else
15
- typedef long BLASLONG;
16
- typedef unsigned long BLASULONG;
17
- #endif
18
-
19
- int BLASFUNC(xerbla)(const char *, int *info, int);
20
-
21
- float BLASFUNC(sdot) (int *, float *, int *, float *, int *);
22
- float BLASFUNC(sdsdot)(int *, float *, float *, int *, float *, int *);
23
-
24
- double BLASFUNC(dsdot) (int *, float *, int *, float *, int *);
25
- double BLASFUNC(ddot) (int *, double *, int *, double *, int *);
26
- double BLASFUNC(qdot) (int *, double *, int *, double *, int *);
27
-
28
- int BLASFUNC(cdotuw) (int *, float *, int *, float *, int *, float*);
29
- int BLASFUNC(cdotcw) (int *, float *, int *, float *, int *, float*);
30
- int BLASFUNC(zdotuw) (int *, double *, int *, double *, int *, double*);
31
- int BLASFUNC(zdotcw) (int *, double *, int *, double *, int *, double*);
32
-
33
- int BLASFUNC(saxpy) (const int *, const float *, const float *, const int *, float *, const int *);
34
- int BLASFUNC(daxpy) (const int *, const double *, const double *, const int *, double *, const int *);
35
- int BLASFUNC(qaxpy) (const int *, const double *, const double *, const int *, double *, const int *);
36
- int BLASFUNC(caxpy) (const int *, const float *, const float *, const int *, float *, const int *);
37
- int BLASFUNC(zaxpy) (const int *, const double *, const double *, const int *, double *, const int *);
38
- int BLASFUNC(xaxpy) (const int *, const double *, const double *, const int *, double *, const int *);
39
- int BLASFUNC(caxpyc)(const int *, const float *, const float *, const int *, float *, const int *);
40
- int BLASFUNC(zaxpyc)(const int *, const double *, const double *, const int *, double *, const int *);
41
- int BLASFUNC(xaxpyc)(const int *, const double *, const double *, const int *, double *, const int *);
42
-
43
- int BLASFUNC(scopy) (int *, float *, int *, float *, int *);
44
- int BLASFUNC(dcopy) (int *, double *, int *, double *, int *);
45
- int BLASFUNC(qcopy) (int *, double *, int *, double *, int *);
46
- int BLASFUNC(ccopy) (int *, float *, int *, float *, int *);
47
- int BLASFUNC(zcopy) (int *, double *, int *, double *, int *);
48
- int BLASFUNC(xcopy) (int *, double *, int *, double *, int *);
49
-
50
- int BLASFUNC(sswap) (int *, float *, int *, float *, int *);
51
- int BLASFUNC(dswap) (int *, double *, int *, double *, int *);
52
- int BLASFUNC(qswap) (int *, double *, int *, double *, int *);
53
- int BLASFUNC(cswap) (int *, float *, int *, float *, int *);
54
- int BLASFUNC(zswap) (int *, double *, int *, double *, int *);
55
- int BLASFUNC(xswap) (int *, double *, int *, double *, int *);
56
-
57
- float BLASFUNC(sasum) (int *, float *, int *);
58
- float BLASFUNC(scasum)(int *, float *, int *);
59
- double BLASFUNC(dasum) (int *, double *, int *);
60
- double BLASFUNC(qasum) (int *, double *, int *);
61
- double BLASFUNC(dzasum)(int *, double *, int *);
62
- double BLASFUNC(qxasum)(int *, double *, int *);
63
-
64
- int BLASFUNC(isamax)(int *, float *, int *);
65
- int BLASFUNC(idamax)(int *, double *, int *);
66
- int BLASFUNC(iqamax)(int *, double *, int *);
67
- int BLASFUNC(icamax)(int *, float *, int *);
68
- int BLASFUNC(izamax)(int *, double *, int *);
69
- int BLASFUNC(ixamax)(int *, double *, int *);
70
-
71
- int BLASFUNC(ismax) (int *, float *, int *);
72
- int BLASFUNC(idmax) (int *, double *, int *);
73
- int BLASFUNC(iqmax) (int *, double *, int *);
74
- int BLASFUNC(icmax) (int *, float *, int *);
75
- int BLASFUNC(izmax) (int *, double *, int *);
76
- int BLASFUNC(ixmax) (int *, double *, int *);
77
-
78
- int BLASFUNC(isamin)(int *, float *, int *);
79
- int BLASFUNC(idamin)(int *, double *, int *);
80
- int BLASFUNC(iqamin)(int *, double *, int *);
81
- int BLASFUNC(icamin)(int *, float *, int *);
82
- int BLASFUNC(izamin)(int *, double *, int *);
83
- int BLASFUNC(ixamin)(int *, double *, int *);
84
-
85
- int BLASFUNC(ismin)(int *, float *, int *);
86
- int BLASFUNC(idmin)(int *, double *, int *);
87
- int BLASFUNC(iqmin)(int *, double *, int *);
88
- int BLASFUNC(icmin)(int *, float *, int *);
89
- int BLASFUNC(izmin)(int *, double *, int *);
90
- int BLASFUNC(ixmin)(int *, double *, int *);
91
-
92
- float BLASFUNC(samax) (int *, float *, int *);
93
- double BLASFUNC(damax) (int *, double *, int *);
94
- double BLASFUNC(qamax) (int *, double *, int *);
95
- float BLASFUNC(scamax)(int *, float *, int *);
96
- double BLASFUNC(dzamax)(int *, double *, int *);
97
- double BLASFUNC(qxamax)(int *, double *, int *);
98
-
99
- float BLASFUNC(samin) (int *, float *, int *);
100
- double BLASFUNC(damin) (int *, double *, int *);
101
- double BLASFUNC(qamin) (int *, double *, int *);
102
- float BLASFUNC(scamin)(int *, float *, int *);
103
- double BLASFUNC(dzamin)(int *, double *, int *);
104
- double BLASFUNC(qxamin)(int *, double *, int *);
105
-
106
- float BLASFUNC(smax) (int *, float *, int *);
107
- double BLASFUNC(dmax) (int *, double *, int *);
108
- double BLASFUNC(qmax) (int *, double *, int *);
109
- float BLASFUNC(scmax) (int *, float *, int *);
110
- double BLASFUNC(dzmax) (int *, double *, int *);
111
- double BLASFUNC(qxmax) (int *, double *, int *);
112
-
113
- float BLASFUNC(smin) (int *, float *, int *);
114
- double BLASFUNC(dmin) (int *, double *, int *);
115
- double BLASFUNC(qmin) (int *, double *, int *);
116
- float BLASFUNC(scmin) (int *, float *, int *);
117
- double BLASFUNC(dzmin) (int *, double *, int *);
118
- double BLASFUNC(qxmin) (int *, double *, int *);
119
-
120
- int BLASFUNC(sscal) (int *, float *, float *, int *);
121
- int BLASFUNC(dscal) (int *, double *, double *, int *);
122
- int BLASFUNC(qscal) (int *, double *, double *, int *);
123
- int BLASFUNC(cscal) (int *, float *, float *, int *);
124
- int BLASFUNC(zscal) (int *, double *, double *, int *);
125
- int BLASFUNC(xscal) (int *, double *, double *, int *);
126
- int BLASFUNC(csscal)(int *, float *, float *, int *);
127
- int BLASFUNC(zdscal)(int *, double *, double *, int *);
128
- int BLASFUNC(xqscal)(int *, double *, double *, int *);
129
-
130
- float BLASFUNC(snrm2) (int *, float *, int *);
131
- float BLASFUNC(scnrm2)(int *, float *, int *);
132
-
133
- double BLASFUNC(dnrm2) (int *, double *, int *);
134
- double BLASFUNC(qnrm2) (int *, double *, int *);
135
- double BLASFUNC(dznrm2)(int *, double *, int *);
136
- double BLASFUNC(qxnrm2)(int *, double *, int *);
137
-
138
- int BLASFUNC(srot) (int *, float *, int *, float *, int *, float *, float *);
139
- int BLASFUNC(drot) (int *, double *, int *, double *, int *, double *, double *);
140
- int BLASFUNC(qrot) (int *, double *, int *, double *, int *, double *, double *);
141
- int BLASFUNC(csrot) (int *, float *, int *, float *, int *, float *, float *);
142
- int BLASFUNC(zdrot) (int *, double *, int *, double *, int *, double *, double *);
143
- int BLASFUNC(xqrot) (int *, double *, int *, double *, int *, double *, double *);
144
-
145
- int BLASFUNC(srotg) (float *, float *, float *, float *);
146
- int BLASFUNC(drotg) (double *, double *, double *, double *);
147
- int BLASFUNC(qrotg) (double *, double *, double *, double *);
148
- int BLASFUNC(crotg) (float *, float *, float *, float *);
149
- int BLASFUNC(zrotg) (double *, double *, double *, double *);
150
- int BLASFUNC(xrotg) (double *, double *, double *, double *);
151
-
152
- int BLASFUNC(srotmg)(float *, float *, float *, float *, float *);
153
- int BLASFUNC(drotmg)(double *, double *, double *, double *, double *);
154
-
155
- int BLASFUNC(srotm) (int *, float *, int *, float *, int *, float *);
156
- int BLASFUNC(drotm) (int *, double *, int *, double *, int *, double *);
157
- int BLASFUNC(qrotm) (int *, double *, int *, double *, int *, double *);
158
-
159
- /* Level 2 routines */
160
-
161
- int BLASFUNC(sger)(int *, int *, float *, float *, int *,
162
- float *, int *, float *, int *);
163
- int BLASFUNC(dger)(int *, int *, double *, double *, int *,
164
- double *, int *, double *, int *);
165
- int BLASFUNC(qger)(int *, int *, double *, double *, int *,
166
- double *, int *, double *, int *);
167
- int BLASFUNC(cgeru)(int *, int *, float *, float *, int *,
168
- float *, int *, float *, int *);
169
- int BLASFUNC(cgerc)(int *, int *, float *, float *, int *,
170
- float *, int *, float *, int *);
171
- int BLASFUNC(zgeru)(int *, int *, double *, double *, int *,
172
- double *, int *, double *, int *);
173
- int BLASFUNC(zgerc)(int *, int *, double *, double *, int *,
174
- double *, int *, double *, int *);
175
- int BLASFUNC(xgeru)(int *, int *, double *, double *, int *,
176
- double *, int *, double *, int *);
177
- int BLASFUNC(xgerc)(int *, int *, double *, double *, int *,
178
- double *, int *, double *, int *);
179
-
180
- int BLASFUNC(sgemv)(const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
181
- int BLASFUNC(dgemv)(const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
182
- int BLASFUNC(qgemv)(const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
183
- int BLASFUNC(cgemv)(const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
184
- int BLASFUNC(zgemv)(const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
185
- int BLASFUNC(xgemv)(const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
186
-
187
- int BLASFUNC(strsv) (const char *, const char *, const char *, const int *, const float *, const int *, float *, const int *);
188
- int BLASFUNC(dtrsv) (const char *, const char *, const char *, const int *, const double *, const int *, double *, const int *);
189
- int BLASFUNC(qtrsv) (const char *, const char *, const char *, const int *, const double *, const int *, double *, const int *);
190
- int BLASFUNC(ctrsv) (const char *, const char *, const char *, const int *, const float *, const int *, float *, const int *);
191
- int BLASFUNC(ztrsv) (const char *, const char *, const char *, const int *, const double *, const int *, double *, const int *);
192
- int BLASFUNC(xtrsv) (const char *, const char *, const char *, const int *, const double *, const int *, double *, const int *);
193
-
194
- int BLASFUNC(stpsv) (char *, char *, char *, int *, float *, float *, int *);
195
- int BLASFUNC(dtpsv) (char *, char *, char *, int *, double *, double *, int *);
196
- int BLASFUNC(qtpsv) (char *, char *, char *, int *, double *, double *, int *);
197
- int BLASFUNC(ctpsv) (char *, char *, char *, int *, float *, float *, int *);
198
- int BLASFUNC(ztpsv) (char *, char *, char *, int *, double *, double *, int *);
199
- int BLASFUNC(xtpsv) (char *, char *, char *, int *, double *, double *, int *);
200
-
201
- int BLASFUNC(strmv) (const char *, const char *, const char *, const int *, const float *, const int *, float *, const int *);
202
- int BLASFUNC(dtrmv) (const char *, const char *, const char *, const int *, const double *, const int *, double *, const int *);
203
- int BLASFUNC(qtrmv) (const char *, const char *, const char *, const int *, const double *, const int *, double *, const int *);
204
- int BLASFUNC(ctrmv) (const char *, const char *, const char *, const int *, const float *, const int *, float *, const int *);
205
- int BLASFUNC(ztrmv) (const char *, const char *, const char *, const int *, const double *, const int *, double *, const int *);
206
- int BLASFUNC(xtrmv) (const char *, const char *, const char *, const int *, const double *, const int *, double *, const int *);
207
-
208
- int BLASFUNC(stpmv) (char *, char *, char *, int *, float *, float *, int *);
209
- int BLASFUNC(dtpmv) (char *, char *, char *, int *, double *, double *, int *);
210
- int BLASFUNC(qtpmv) (char *, char *, char *, int *, double *, double *, int *);
211
- int BLASFUNC(ctpmv) (char *, char *, char *, int *, float *, float *, int *);
212
- int BLASFUNC(ztpmv) (char *, char *, char *, int *, double *, double *, int *);
213
- int BLASFUNC(xtpmv) (char *, char *, char *, int *, double *, double *, int *);
214
-
215
- int BLASFUNC(stbmv) (char *, char *, char *, int *, int *, float *, int *, float *, int *);
216
- int BLASFUNC(dtbmv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
217
- int BLASFUNC(qtbmv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
218
- int BLASFUNC(ctbmv) (char *, char *, char *, int *, int *, float *, int *, float *, int *);
219
- int BLASFUNC(ztbmv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
220
- int BLASFUNC(xtbmv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
221
-
222
- int BLASFUNC(stbsv) (char *, char *, char *, int *, int *, float *, int *, float *, int *);
223
- int BLASFUNC(dtbsv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
224
- int BLASFUNC(qtbsv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
225
- int BLASFUNC(ctbsv) (char *, char *, char *, int *, int *, float *, int *, float *, int *);
226
- int BLASFUNC(ztbsv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
227
- int BLASFUNC(xtbsv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
228
-
229
- int BLASFUNC(ssymv) (const char *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
230
- int BLASFUNC(dsymv) (const char *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
231
- int BLASFUNC(qsymv) (const char *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
232
-
233
- int BLASFUNC(sspmv) (char *, int *, float *, float *,
234
- float *, int *, float *, float *, int *);
235
- int BLASFUNC(dspmv) (char *, int *, double *, double *,
236
- double *, int *, double *, double *, int *);
237
- int BLASFUNC(qspmv) (char *, int *, double *, double *,
238
- double *, int *, double *, double *, int *);
239
-
240
- int BLASFUNC(ssyr) (const char *, const int *, const float *, const float *, const int *, float *, const int *);
241
- int BLASFUNC(dsyr) (const char *, const int *, const double *, const double *, const int *, double *, const int *);
242
- int BLASFUNC(qsyr) (const char *, const int *, const double *, const double *, const int *, double *, const int *);
243
-
244
- int BLASFUNC(ssyr2) (const char *, const int *, const float *, const float *, const int *, const float *, const int *, float *, const int *);
245
- int BLASFUNC(dsyr2) (const char *, const int *, const double *, const double *, const int *, const double *, const int *, double *, const int *);
246
- int BLASFUNC(qsyr2) (const char *, const int *, const double *, const double *, const int *, const double *, const int *, double *, const int *);
247
- int BLASFUNC(csyr2) (const char *, const int *, const float *, const float *, const int *, const float *, const int *, float *, const int *);
248
- int BLASFUNC(zsyr2) (const char *, const int *, const double *, const double *, const int *, const double *, const int *, double *, const int *);
249
- int BLASFUNC(xsyr2) (const char *, const int *, const double *, const double *, const int *, const double *, const int *, double *, const int *);
250
-
251
- int BLASFUNC(sspr) (char *, int *, float *, float *, int *,
252
- float *);
253
- int BLASFUNC(dspr) (char *, int *, double *, double *, int *,
254
- double *);
255
- int BLASFUNC(qspr) (char *, int *, double *, double *, int *,
256
- double *);
257
-
258
- int BLASFUNC(sspr2) (char *, int *, float *,
259
- float *, int *, float *, int *, float *);
260
- int BLASFUNC(dspr2) (char *, int *, double *,
261
- double *, int *, double *, int *, double *);
262
- int BLASFUNC(qspr2) (char *, int *, double *,
263
- double *, int *, double *, int *, double *);
264
- int BLASFUNC(cspr2) (char *, int *, float *,
265
- float *, int *, float *, int *, float *);
266
- int BLASFUNC(zspr2) (char *, int *, double *,
267
- double *, int *, double *, int *, double *);
268
- int BLASFUNC(xspr2) (char *, int *, double *,
269
- double *, int *, double *, int *, double *);
270
-
271
- int BLASFUNC(cher) (char *, int *, float *, float *, int *,
272
- float *, int *);
273
- int BLASFUNC(zher) (char *, int *, double *, double *, int *,
274
- double *, int *);
275
- int BLASFUNC(xher) (char *, int *, double *, double *, int *,
276
- double *, int *);
277
-
278
- int BLASFUNC(chpr) (char *, int *, float *, float *, int *, float *);
279
- int BLASFUNC(zhpr) (char *, int *, double *, double *, int *, double *);
280
- int BLASFUNC(xhpr) (char *, int *, double *, double *, int *, double *);
281
-
282
- int BLASFUNC(cher2) (char *, int *, float *,
283
- float *, int *, float *, int *, float *, int *);
284
- int BLASFUNC(zher2) (char *, int *, double *,
285
- double *, int *, double *, int *, double *, int *);
286
- int BLASFUNC(xher2) (char *, int *, double *,
287
- double *, int *, double *, int *, double *, int *);
288
-
289
- int BLASFUNC(chpr2) (char *, int *, float *,
290
- float *, int *, float *, int *, float *);
291
- int BLASFUNC(zhpr2) (char *, int *, double *,
292
- double *, int *, double *, int *, double *);
293
- int BLASFUNC(xhpr2) (char *, int *, double *,
294
- double *, int *, double *, int *, double *);
295
-
296
- int BLASFUNC(chemv) (const char *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
297
- int BLASFUNC(zhemv) (const char *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
298
- int BLASFUNC(xhemv) (const char *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
299
-
300
- int BLASFUNC(chpmv) (char *, int *, float *, float *,
301
- float *, int *, float *, float *, int *);
302
- int BLASFUNC(zhpmv) (char *, int *, double *, double *,
303
- double *, int *, double *, double *, int *);
304
- int BLASFUNC(xhpmv) (char *, int *, double *, double *,
305
- double *, int *, double *, double *, int *);
306
-
307
- int BLASFUNC(snorm)(char *, int *, int *, float *, int *);
308
- int BLASFUNC(dnorm)(char *, int *, int *, double *, int *);
309
- int BLASFUNC(cnorm)(char *, int *, int *, float *, int *);
310
- int BLASFUNC(znorm)(char *, int *, int *, double *, int *);
311
-
312
- int BLASFUNC(sgbmv)(char *, int *, int *, int *, int *, float *, float *, int *,
313
- float *, int *, float *, float *, int *);
314
- int BLASFUNC(dgbmv)(char *, int *, int *, int *, int *, double *, double *, int *,
315
- double *, int *, double *, double *, int *);
316
- int BLASFUNC(qgbmv)(char *, int *, int *, int *, int *, double *, double *, int *,
317
- double *, int *, double *, double *, int *);
318
- int BLASFUNC(cgbmv)(char *, int *, int *, int *, int *, float *, float *, int *,
319
- float *, int *, float *, float *, int *);
320
- int BLASFUNC(zgbmv)(char *, int *, int *, int *, int *, double *, double *, int *,
321
- double *, int *, double *, double *, int *);
322
- int BLASFUNC(xgbmv)(char *, int *, int *, int *, int *, double *, double *, int *,
323
- double *, int *, double *, double *, int *);
324
-
325
- int BLASFUNC(ssbmv)(char *, int *, int *, float *, float *, int *,
326
- float *, int *, float *, float *, int *);
327
- int BLASFUNC(dsbmv)(char *, int *, int *, double *, double *, int *,
328
- double *, int *, double *, double *, int *);
329
- int BLASFUNC(qsbmv)(char *, int *, int *, double *, double *, int *,
330
- double *, int *, double *, double *, int *);
331
- int BLASFUNC(csbmv)(char *, int *, int *, float *, float *, int *,
332
- float *, int *, float *, float *, int *);
333
- int BLASFUNC(zsbmv)(char *, int *, int *, double *, double *, int *,
334
- double *, int *, double *, double *, int *);
335
- int BLASFUNC(xsbmv)(char *, int *, int *, double *, double *, int *,
336
- double *, int *, double *, double *, int *);
337
-
338
- int BLASFUNC(chbmv)(char *, int *, int *, float *, float *, int *,
339
- float *, int *, float *, float *, int *);
340
- int BLASFUNC(zhbmv)(char *, int *, int *, double *, double *, int *,
341
- double *, int *, double *, double *, int *);
342
- int BLASFUNC(xhbmv)(char *, int *, int *, double *, double *, int *,
343
- double *, int *, double *, double *, int *);
344
-
345
- /* Level 3 routines */
346
-
347
- int BLASFUNC(sgemm)(const char *, const char *, const int *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
348
- int BLASFUNC(dgemm)(const char *, const char *, const int *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
349
- int BLASFUNC(qgemm)(const char *, const char *, const int *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
350
- int BLASFUNC(cgemm)(const char *, const char *, const int *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
351
- int BLASFUNC(zgemm)(const char *, const char *, const int *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
352
- int BLASFUNC(xgemm)(const char *, const char *, const int *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
353
-
354
- int BLASFUNC(cgemm3m)(char *, char *, int *, int *, int *, float *,
355
- float *, int *, float *, int *, float *, float *, int *);
356
- int BLASFUNC(zgemm3m)(char *, char *, int *, int *, int *, double *,
357
- double *, int *, double *, int *, double *, double *, int *);
358
- int BLASFUNC(xgemm3m)(char *, char *, int *, int *, int *, double *,
359
- double *, int *, double *, int *, double *, double *, int *);
360
-
361
- int BLASFUNC(sge2mm)(char *, char *, char *, int *, int *,
362
- float *, float *, int *, float *, int *,
363
- float *, float *, int *);
364
- int BLASFUNC(dge2mm)(char *, char *, char *, int *, int *,
365
- double *, double *, int *, double *, int *,
366
- double *, double *, int *);
367
- int BLASFUNC(cge2mm)(char *, char *, char *, int *, int *,
368
- float *, float *, int *, float *, int *,
369
- float *, float *, int *);
370
- int BLASFUNC(zge2mm)(char *, char *, char *, int *, int *,
371
- double *, double *, int *, double *, int *,
372
- double *, double *, int *);
373
-
374
- int BLASFUNC(strsm)(const char *, const char *, const char *, const char *, const int *, const int *, const float *, const float *, const int *, float *, const int *);
375
- int BLASFUNC(dtrsm)(const char *, const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, double *, const int *);
376
- int BLASFUNC(qtrsm)(const char *, const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, double *, const int *);
377
- int BLASFUNC(ctrsm)(const char *, const char *, const char *, const char *, const int *, const int *, const float *, const float *, const int *, float *, const int *);
378
- int BLASFUNC(ztrsm)(const char *, const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, double *, const int *);
379
- int BLASFUNC(xtrsm)(const char *, const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, double *, const int *);
380
-
381
- int BLASFUNC(strmm)(const char *, const char *, const char *, const char *, const int *, const int *, const float *, const float *, const int *, float *, const int *);
382
- int BLASFUNC(dtrmm)(const char *, const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, double *, const int *);
383
- int BLASFUNC(qtrmm)(const char *, const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, double *, const int *);
384
- int BLASFUNC(ctrmm)(const char *, const char *, const char *, const char *, const int *, const int *, const float *, const float *, const int *, float *, const int *);
385
- int BLASFUNC(ztrmm)(const char *, const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, double *, const int *);
386
- int BLASFUNC(xtrmm)(const char *, const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, double *, const int *);
387
-
388
- int BLASFUNC(ssymm)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
389
- int BLASFUNC(dsymm)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
390
- int BLASFUNC(qsymm)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
391
- int BLASFUNC(csymm)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
392
- int BLASFUNC(zsymm)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
393
- int BLASFUNC(xsymm)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
394
-
395
- int BLASFUNC(csymm3m)(char *, char *, int *, int *, float *, float *, int *, float *, int *, float *, float *, int *);
396
- int BLASFUNC(zsymm3m)(char *, char *, int *, int *, double *, double *, int *, double *, int *, double *, double *, int *);
397
- int BLASFUNC(xsymm3m)(char *, char *, int *, int *, double *, double *, int *, double *, int *, double *, double *, int *);
398
-
399
- int BLASFUNC(ssyrk)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, float *, const int *);
400
- int BLASFUNC(dsyrk)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, double *, const int *);
401
- int BLASFUNC(qsyrk)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, double *, const int *);
402
- int BLASFUNC(csyrk)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, float *, const int *);
403
- int BLASFUNC(zsyrk)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, double *, const int *);
404
- int BLASFUNC(xsyrk)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, double *, const int *);
405
-
406
- int BLASFUNC(ssyr2k)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
407
- int BLASFUNC(dsyr2k)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double*, const int *, const double *, double *, const int *);
408
- int BLASFUNC(qsyr2k)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double*, const int *, const double *, double *, const int *);
409
- int BLASFUNC(csyr2k)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
410
- int BLASFUNC(zsyr2k)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double*, const int *, const double *, double *, const int *);
411
- int BLASFUNC(xsyr2k)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double*, const int *, const double *, double *, const int *);
412
-
413
- int BLASFUNC(chemm)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
414
- int BLASFUNC(zhemm)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
415
- int BLASFUNC(xhemm)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
416
-
417
- int BLASFUNC(chemm3m)(char *, char *, int *, int *, float *, float *, int *,
418
- float *, int *, float *, float *, int *);
419
- int BLASFUNC(zhemm3m)(char *, char *, int *, int *, double *, double *, int *,
420
- double *, int *, double *, double *, int *);
421
- int BLASFUNC(xhemm3m)(char *, char *, int *, int *, double *, double *, int *,
422
- double *, int *, double *, double *, int *);
423
-
424
- int BLASFUNC(cherk)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, float *, const int *);
425
- int BLASFUNC(zherk)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, double *, const int *);
426
- int BLASFUNC(xherk)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, double *, const int *);
427
-
428
- int BLASFUNC(cher2k)(const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
429
- int BLASFUNC(zher2k)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
430
- int BLASFUNC(xher2k)(const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double *, const int *, const double *, double *, const int *);
431
- int BLASFUNC(cher2m)(const char *, const char *, const char *, const int *, const int *, const float *, const float *, const int *, const float *, const int *, const float *, float *, const int *);
432
- int BLASFUNC(zher2m)(const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double*, const int *, const double *, double *, const int *);
433
- int BLASFUNC(xher2m)(const char *, const char *, const char *, const int *, const int *, const double *, const double *, const int *, const double*, const int *, const double *, double *, const int *);
434
-
435
-
436
- #ifdef __cplusplus
437
- }
438
- #endif
439
-
440
- #endif