sequenzo 0.1.18__cp312-cp312-win_amd64.whl → 0.1.20__cp312-cp312-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (399) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp312-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp312-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +108 -6
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp312-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  12. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp312-win_amd64.pyd +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  14. sequenzo/dissimilarity_measures/utils/seqconc.cp312-win_amd64.pyd +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  16. sequenzo/dissimilarity_measures/utils/seqdss.cp312-win_amd64.pyd +0 -0
  17. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  18. sequenzo/dissimilarity_measures/utils/seqdur.cp312-win_amd64.pyd +0 -0
  19. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  20. sequenzo/dissimilarity_measures/utils/seqlength.cp312-win_amd64.pyd +0 -0
  21. sequenzo/multidomain/cat.py +0 -53
  22. sequenzo/multidomain/dat.py +11 -3
  23. sequenzo/multidomain/idcd.py +0 -3
  24. sequenzo/multidomain/linked_polyad.py +0 -1
  25. sequenzo/openmp_setup.py +233 -0
  26. sequenzo/visualization/plot_transition_matrix.py +21 -22
  27. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
  28. sequenzo-0.1.20.dist-info/RECORD +272 -0
  29. sequenzo/dissimilarity_measures/setup.py +0 -35
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  172. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  173. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  174. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  175. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  176. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  177. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  178. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  179. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  180. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  181. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  182. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  183. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  184. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  185. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  186. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  187. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  188. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  189. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  190. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  191. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  192. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  197. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  198. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  199. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  200. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  201. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  202. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  203. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  206. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  207. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  208. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  209. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  210. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  211. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  212. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  213. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  214. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
  215. sequenzo/dissimilarity_measures/src/eigen/test/evaluator_common.h +0 -0
  216. sequenzo/dissimilarity_measures/src/eigen/test/gpu_common.h +0 -176
  217. sequenzo/dissimilarity_measures/src/eigen/test/main.h +0 -857
  218. sequenzo/dissimilarity_measures/src/eigen/test/packetmath_test_shared.h +0 -275
  219. sequenzo/dissimilarity_measures/src/eigen/test/product.h +0 -259
  220. sequenzo/dissimilarity_measures/src/eigen/test/random_without_cast_overflow.h +0 -152
  221. sequenzo/dissimilarity_measures/src/eigen/test/solverbase.h +0 -36
  222. sequenzo/dissimilarity_measures/src/eigen/test/sparse.h +0 -204
  223. sequenzo/dissimilarity_measures/src/eigen/test/sparse_solver.h +0 -699
  224. sequenzo/dissimilarity_measures/src/eigen/test/split_test_helper.h +0 -5994
  225. sequenzo/dissimilarity_measures/src/eigen/test/svd_common.h +0 -521
  226. sequenzo/dissimilarity_measures/src/eigen/test/svd_fill.h +0 -118
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  357. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  358. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  359. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  360. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  361. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  362. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  363. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  364. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  365. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  366. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  367. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  368. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  369. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  370. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  371. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  372. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  373. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  374. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  375. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  376. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  377. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  378. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  379. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  380. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  381. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  382. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  383. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  384. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  385. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  386. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  387. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  388. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  389. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  390. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  391. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  392. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  393. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  394. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  395. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  396. sequenzo-0.1.18.dist-info/RECORD +0 -638
  397. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/WHEEL +0 -0
  398. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE +0 -0
  399. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/top_level.txt +0 -0
@@ -1,513 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Mehdi Goli Codeplay Software Ltd.
5
- // Ralph Potter Codeplay Software Ltd.
6
- // Luke Iwanski Codeplay Software Ltd.
7
- // Contact: <eigen@codeplay.com>
8
- //
9
- // This Source Code Form is subject to the terms of the Mozilla
10
- // Public License v. 2.0. If a copy of the MPL was not distributed
11
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
12
-
13
- /*****************************************************************
14
- * TensorScanSycl.h
15
- *
16
- * \brief:
17
- * Tensor Scan Sycl implement the extend version of
18
- * "Efficient parallel scan algorithms for GPUs." .for Tensor operations.
19
- * The algorithm requires up to 3 stage (consequently 3 kernels) depending on
20
- * the size of the tensor. In the first kernel (ScanKernelFunctor), each
21
- * threads within the work-group individually reduces the allocated elements per
22
- * thread in order to reduces the total number of blocks. In the next step all
23
- * thread within the work-group will reduce the associated blocks into the
24
- * temporary buffers. In the next kernel(ScanBlockKernelFunctor), the temporary
25
- * buffer is given as an input and all the threads within a work-group scan and
26
- * reduces the boundaries between the blocks (generated from the previous
27
- * kernel). and write the data on the temporary buffer. If the second kernel is
28
- * required, the third and final kerenl (ScanAdjustmentKernelFunctor) will
29
- * adjust the final result into the output buffer.
30
- * The original algorithm for the parallel prefix sum can be found here:
31
- *
32
- * Sengupta, Shubhabrata, Mark Harris, and Michael Garland. "Efficient parallel
33
- * scan algorithms for GPUs." NVIDIA, Santa Clara, CA, Tech. Rep. NVR-2008-003
34
- *1, no. 1 (2008): 1-17.
35
- *****************************************************************/
36
-
37
- #ifndef UNSUPPORTED_EIGEN_CXX11_SRC_TENSOR_TENSOR_SYCL_SYCL_HPP
38
- #define UNSUPPORTED_EIGEN_CXX11_SRC_TENSOR_TENSOR_SYCL_SYCL_HPP
39
-
40
- namespace Eigen {
41
- namespace TensorSycl {
42
- namespace internal {
43
-
44
- #ifndef EIGEN_SYCL_MAX_GLOBAL_RANGE
45
- #define EIGEN_SYCL_MAX_GLOBAL_RANGE (EIGEN_SYCL_LOCAL_THREAD_DIM0 * EIGEN_SYCL_LOCAL_THREAD_DIM1 * 4)
46
- #endif
47
-
48
- template <typename index_t>
49
- struct ScanParameters {
50
- // must be power of 2
51
- static EIGEN_CONSTEXPR index_t ScanPerThread = 8;
52
- const index_t total_size;
53
- const index_t non_scan_size;
54
- const index_t scan_size;
55
- const index_t non_scan_stride;
56
- const index_t scan_stride;
57
- const index_t panel_threads;
58
- const index_t group_threads;
59
- const index_t block_threads;
60
- const index_t elements_per_group;
61
- const index_t elements_per_block;
62
- const index_t loop_range;
63
-
64
- ScanParameters(index_t total_size_, index_t non_scan_size_, index_t scan_size_, index_t non_scan_stride_,
65
- index_t scan_stride_, index_t panel_threads_, index_t group_threads_, index_t block_threads_,
66
- index_t elements_per_group_, index_t elements_per_block_, index_t loop_range_)
67
- : total_size(total_size_),
68
- non_scan_size(non_scan_size_),
69
- scan_size(scan_size_),
70
- non_scan_stride(non_scan_stride_),
71
- scan_stride(scan_stride_),
72
- panel_threads(panel_threads_),
73
- group_threads(group_threads_),
74
- block_threads(block_threads_),
75
- elements_per_group(elements_per_group_),
76
- elements_per_block(elements_per_block_),
77
- loop_range(loop_range_) {}
78
- };
79
-
80
- enum class scan_step { first, second };
81
- template <typename Evaluator, typename CoeffReturnType, typename OutAccessor, typename Op, typename Index,
82
- scan_step stp>
83
- struct ScanKernelFunctor {
84
- typedef cl::sycl::accessor<CoeffReturnType, 1, cl::sycl::access::mode::read_write, cl::sycl::access::target::local>
85
- LocalAccessor;
86
- static EIGEN_CONSTEXPR int PacketSize = ScanParameters<Index>::ScanPerThread / 2;
87
-
88
- LocalAccessor scratch;
89
- Evaluator dev_eval;
90
- OutAccessor out_accessor;
91
- OutAccessor temp_accessor;
92
- const ScanParameters<Index> scanParameters;
93
- Op accumulator;
94
- const bool inclusive;
95
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ScanKernelFunctor(LocalAccessor scratch_, const Evaluator dev_eval_,
96
- OutAccessor out_accessor_, OutAccessor temp_accessor_,
97
- const ScanParameters<Index> scanParameters_, Op accumulator_,
98
- const bool inclusive_)
99
- : scratch(scratch_),
100
- dev_eval(dev_eval_),
101
- out_accessor(out_accessor_),
102
- temp_accessor(temp_accessor_),
103
- scanParameters(scanParameters_),
104
- accumulator(accumulator_),
105
- inclusive(inclusive_) {}
106
-
107
- template <scan_step sst = stp, typename Input>
108
- typename ::Eigen::internal::enable_if<sst == scan_step::first, CoeffReturnType>::type EIGEN_DEVICE_FUNC
109
- EIGEN_STRONG_INLINE
110
- read(const Input &inpt, Index global_id) {
111
- return inpt.coeff(global_id);
112
- }
113
-
114
- template <scan_step sst = stp, typename Input>
115
- typename ::Eigen::internal::enable_if<sst != scan_step::first, CoeffReturnType>::type EIGEN_DEVICE_FUNC
116
- EIGEN_STRONG_INLINE
117
- read(const Input &inpt, Index global_id) {
118
- return inpt[global_id];
119
- }
120
-
121
- template <scan_step sst = stp, typename InclusiveOp>
122
- typename ::Eigen::internal::enable_if<sst == scan_step::first>::type EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
123
- first_step_inclusive_Operation(InclusiveOp inclusive_op) {
124
- inclusive_op();
125
- }
126
-
127
- template <scan_step sst = stp, typename InclusiveOp>
128
- typename ::Eigen::internal::enable_if<sst != scan_step::first>::type EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
129
- first_step_inclusive_Operation(InclusiveOp) {}
130
-
131
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void operator()(cl::sycl::nd_item<1> itemID) {
132
- auto out_ptr = out_accessor.get_pointer();
133
- auto tmp_ptr = temp_accessor.get_pointer();
134
- auto scratch_ptr = scratch.get_pointer().get();
135
-
136
- for (Index loop_offset = 0; loop_offset < scanParameters.loop_range; loop_offset++) {
137
- Index data_offset = (itemID.get_global_id(0) + (itemID.get_global_range(0) * loop_offset));
138
- Index tmp = data_offset % scanParameters.panel_threads;
139
- const Index panel_id = data_offset / scanParameters.panel_threads;
140
- const Index group_id = tmp / scanParameters.group_threads;
141
- tmp = tmp % scanParameters.group_threads;
142
- const Index block_id = tmp / scanParameters.block_threads;
143
- const Index local_id = tmp % scanParameters.block_threads;
144
- // we put one element per packet in scratch_mem
145
- const Index scratch_stride = scanParameters.elements_per_block / PacketSize;
146
- const Index scratch_offset = (itemID.get_local_id(0) / scanParameters.block_threads) * scratch_stride;
147
- CoeffReturnType private_scan[ScanParameters<Index>::ScanPerThread];
148
- CoeffReturnType inclusive_scan;
149
- // the actual panel size is scan_size * non_scan_size.
150
- // elements_per_panel is roundup to power of 2 for binary tree
151
- const Index panel_offset = panel_id * scanParameters.scan_size * scanParameters.non_scan_size;
152
- const Index group_offset = group_id * scanParameters.non_scan_stride;
153
- // This will be effective when the size is bigger than elements_per_block
154
- const Index block_offset = block_id * scanParameters.elements_per_block * scanParameters.scan_stride;
155
- const Index thread_offset = (ScanParameters<Index>::ScanPerThread * local_id * scanParameters.scan_stride);
156
- const Index global_offset = panel_offset + group_offset + block_offset + thread_offset;
157
- Index next_elements = 0;
158
- EIGEN_UNROLL_LOOP
159
- for (int i = 0; i < ScanParameters<Index>::ScanPerThread; i++) {
160
- Index global_id = global_offset + next_elements;
161
- private_scan[i] = ((((block_id * scanParameters.elements_per_block) +
162
- (ScanParameters<Index>::ScanPerThread * local_id) + i) < scanParameters.scan_size) &&
163
- (global_id < scanParameters.total_size))
164
- ? read(dev_eval, global_id)
165
- : accumulator.initialize();
166
- next_elements += scanParameters.scan_stride;
167
- }
168
- first_step_inclusive_Operation([&]() EIGEN_DEVICE_FUNC {
169
- if (inclusive) {
170
- inclusive_scan = private_scan[ScanParameters<Index>::ScanPerThread - 1];
171
- }
172
- });
173
- // This for loop must be 2
174
- EIGEN_UNROLL_LOOP
175
- for (int packetIndex = 0; packetIndex < ScanParameters<Index>::ScanPerThread; packetIndex += PacketSize) {
176
- Index private_offset = 1;
177
- // build sum in place up the tree
178
- EIGEN_UNROLL_LOOP
179
- for (Index d = PacketSize >> 1; d > 0; d >>= 1) {
180
- EIGEN_UNROLL_LOOP
181
- for (Index l = 0; l < d; l++) {
182
- Index ai = private_offset * (2 * l + 1) - 1 + packetIndex;
183
- Index bi = private_offset * (2 * l + 2) - 1 + packetIndex;
184
- CoeffReturnType accum = accumulator.initialize();
185
- accumulator.reduce(private_scan[ai], &accum);
186
- accumulator.reduce(private_scan[bi], &accum);
187
- private_scan[bi] = accumulator.finalize(accum);
188
- }
189
- private_offset *= 2;
190
- }
191
- scratch_ptr[2 * local_id + (packetIndex / PacketSize) + scratch_offset] =
192
- private_scan[PacketSize - 1 + packetIndex];
193
- private_scan[PacketSize - 1 + packetIndex] = accumulator.initialize();
194
- // traverse down tree & build scan
195
- EIGEN_UNROLL_LOOP
196
- for (Index d = 1; d < PacketSize; d *= 2) {
197
- private_offset >>= 1;
198
- EIGEN_UNROLL_LOOP
199
- for (Index l = 0; l < d; l++) {
200
- Index ai = private_offset * (2 * l + 1) - 1 + packetIndex;
201
- Index bi = private_offset * (2 * l + 2) - 1 + packetIndex;
202
- CoeffReturnType accum = accumulator.initialize();
203
- accumulator.reduce(private_scan[ai], &accum);
204
- accumulator.reduce(private_scan[bi], &accum);
205
- private_scan[ai] = private_scan[bi];
206
- private_scan[bi] = accumulator.finalize(accum);
207
- }
208
- }
209
- }
210
-
211
- Index offset = 1;
212
- // build sum in place up the tree
213
- for (Index d = scratch_stride >> 1; d > 0; d >>= 1) {
214
- // Synchronise
215
- itemID.barrier(cl::sycl::access::fence_space::local_space);
216
- if (local_id < d) {
217
- Index ai = offset * (2 * local_id + 1) - 1 + scratch_offset;
218
- Index bi = offset * (2 * local_id + 2) - 1 + scratch_offset;
219
- CoeffReturnType accum = accumulator.initialize();
220
- accumulator.reduce(scratch_ptr[ai], &accum);
221
- accumulator.reduce(scratch_ptr[bi], &accum);
222
- scratch_ptr[bi] = accumulator.finalize(accum);
223
- }
224
- offset *= 2;
225
- }
226
- // Synchronise
227
- itemID.barrier(cl::sycl::access::fence_space::local_space);
228
- // next step optimisation
229
- if (local_id == 0) {
230
- if (((scanParameters.elements_per_group / scanParameters.elements_per_block) > 1)) {
231
- const Index temp_id = panel_id * (scanParameters.elements_per_group / scanParameters.elements_per_block) *
232
- scanParameters.non_scan_size +
233
- group_id * (scanParameters.elements_per_group / scanParameters.elements_per_block) +
234
- block_id;
235
- tmp_ptr[temp_id] = scratch_ptr[scratch_stride - 1 + scratch_offset];
236
- }
237
- // clear the last element
238
- scratch_ptr[scratch_stride - 1 + scratch_offset] = accumulator.initialize();
239
- }
240
- // traverse down tree & build scan
241
- for (Index d = 1; d < scratch_stride; d *= 2) {
242
- offset >>= 1;
243
- // Synchronise
244
- itemID.barrier(cl::sycl::access::fence_space::local_space);
245
- if (local_id < d) {
246
- Index ai = offset * (2 * local_id + 1) - 1 + scratch_offset;
247
- Index bi = offset * (2 * local_id + 2) - 1 + scratch_offset;
248
- CoeffReturnType accum = accumulator.initialize();
249
- accumulator.reduce(scratch_ptr[ai], &accum);
250
- accumulator.reduce(scratch_ptr[bi], &accum);
251
- scratch_ptr[ai] = scratch_ptr[bi];
252
- scratch_ptr[bi] = accumulator.finalize(accum);
253
- }
254
- }
255
- // Synchronise
256
- itemID.barrier(cl::sycl::access::fence_space::local_space);
257
- // This for loop must be 2
258
- EIGEN_UNROLL_LOOP
259
- for (int packetIndex = 0; packetIndex < ScanParameters<Index>::ScanPerThread; packetIndex += PacketSize) {
260
- EIGEN_UNROLL_LOOP
261
- for (Index i = 0; i < PacketSize; i++) {
262
- CoeffReturnType accum = private_scan[packetIndex + i];
263
- accumulator.reduce(scratch_ptr[2 * local_id + (packetIndex / PacketSize) + scratch_offset], &accum);
264
- private_scan[packetIndex + i] = accumulator.finalize(accum);
265
- }
266
- }
267
- first_step_inclusive_Operation([&]() EIGEN_DEVICE_FUNC {
268
- if (inclusive) {
269
- accumulator.reduce(private_scan[ScanParameters<Index>::ScanPerThread - 1], &inclusive_scan);
270
- private_scan[0] = accumulator.finalize(inclusive_scan);
271
- }
272
- });
273
- next_elements = 0;
274
- // right the first set of private param
275
- EIGEN_UNROLL_LOOP
276
- for (Index i = 0; i < ScanParameters<Index>::ScanPerThread; i++) {
277
- Index global_id = global_offset + next_elements;
278
- if ((((block_id * scanParameters.elements_per_block) + (ScanParameters<Index>::ScanPerThread * local_id) + i) <
279
- scanParameters.scan_size) &&
280
- (global_id < scanParameters.total_size)) {
281
- Index private_id = (i * !inclusive) + (((i + 1) % ScanParameters<Index>::ScanPerThread) * (inclusive));
282
- out_ptr[global_id] = private_scan[private_id];
283
- }
284
- next_elements += scanParameters.scan_stride;
285
- }
286
- } // end for loop
287
- }
288
- };
289
-
290
- template <typename CoeffReturnType, typename InAccessor, typename OutAccessor, typename Op, typename Index>
291
- struct ScanAdjustmentKernelFunctor {
292
- typedef cl::sycl::accessor<CoeffReturnType, 1, cl::sycl::access::mode::read_write, cl::sycl::access::target::local>
293
- LocalAccessor;
294
- static EIGEN_CONSTEXPR int PacketSize = ScanParameters<Index>::ScanPerThread / 2;
295
- InAccessor in_accessor;
296
- OutAccessor out_accessor;
297
- const ScanParameters<Index> scanParameters;
298
- Op accumulator;
299
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ScanAdjustmentKernelFunctor(LocalAccessor, InAccessor in_accessor_,
300
- OutAccessor out_accessor_,
301
- const ScanParameters<Index> scanParameters_,
302
- Op accumulator_)
303
- : in_accessor(in_accessor_),
304
- out_accessor(out_accessor_),
305
- scanParameters(scanParameters_),
306
- accumulator(accumulator_) {}
307
-
308
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void operator()(cl::sycl::nd_item<1> itemID) {
309
- auto in_ptr = in_accessor.get_pointer();
310
- auto out_ptr = out_accessor.get_pointer();
311
-
312
- for (Index loop_offset = 0; loop_offset < scanParameters.loop_range; loop_offset++) {
313
- Index data_offset = (itemID.get_global_id(0) + (itemID.get_global_range(0) * loop_offset));
314
- Index tmp = data_offset % scanParameters.panel_threads;
315
- const Index panel_id = data_offset / scanParameters.panel_threads;
316
- const Index group_id = tmp / scanParameters.group_threads;
317
- tmp = tmp % scanParameters.group_threads;
318
- const Index block_id = tmp / scanParameters.block_threads;
319
- const Index local_id = tmp % scanParameters.block_threads;
320
-
321
- // the actual panel size is scan_size * non_scan_size.
322
- // elements_per_panel is roundup to power of 2 for binary tree
323
- const Index panel_offset = panel_id * scanParameters.scan_size * scanParameters.non_scan_size;
324
- const Index group_offset = group_id * scanParameters.non_scan_stride;
325
- // This will be effective when the size is bigger than elements_per_block
326
- const Index block_offset = block_id * scanParameters.elements_per_block * scanParameters.scan_stride;
327
- const Index thread_offset = ScanParameters<Index>::ScanPerThread * local_id * scanParameters.scan_stride;
328
-
329
- const Index global_offset = panel_offset + group_offset + block_offset + thread_offset;
330
- const Index block_size = scanParameters.elements_per_group / scanParameters.elements_per_block;
331
- const Index in_id = (panel_id * block_size * scanParameters.non_scan_size) + (group_id * block_size) + block_id;
332
- CoeffReturnType adjust_val = in_ptr[in_id];
333
-
334
- Index next_elements = 0;
335
- EIGEN_UNROLL_LOOP
336
- for (Index i = 0; i < ScanParameters<Index>::ScanPerThread; i++) {
337
- Index global_id = global_offset + next_elements;
338
- if ((((block_id * scanParameters.elements_per_block) + (ScanParameters<Index>::ScanPerThread * local_id) + i) <
339
- scanParameters.scan_size) &&
340
- (global_id < scanParameters.total_size)) {
341
- CoeffReturnType accum = adjust_val;
342
- accumulator.reduce(out_ptr[global_id], &accum);
343
- out_ptr[global_id] = accumulator.finalize(accum);
344
- }
345
- next_elements += scanParameters.scan_stride;
346
- }
347
- }
348
- }
349
- };
350
-
351
- template <typename Index>
352
- struct ScanInfo {
353
- const Index &total_size;
354
- const Index &scan_size;
355
- const Index &panel_size;
356
- const Index &non_scan_size;
357
- const Index &scan_stride;
358
- const Index &non_scan_stride;
359
-
360
- Index max_elements_per_block;
361
- Index block_size;
362
- Index panel_threads;
363
- Index group_threads;
364
- Index block_threads;
365
- Index elements_per_group;
366
- Index elements_per_block;
367
- Index loop_range;
368
- Index global_range;
369
- Index local_range;
370
- const Eigen::SyclDevice &dev;
371
- EIGEN_STRONG_INLINE ScanInfo(const Index &total_size_, const Index &scan_size_, const Index &panel_size_,
372
- const Index &non_scan_size_, const Index &scan_stride_, const Index &non_scan_stride_,
373
- const Eigen::SyclDevice &dev_)
374
- : total_size(total_size_),
375
- scan_size(scan_size_),
376
- panel_size(panel_size_),
377
- non_scan_size(non_scan_size_),
378
- scan_stride(scan_stride_),
379
- non_scan_stride(non_scan_stride_),
380
- dev(dev_) {
381
- // must be power of 2
382
- local_range = std::min(Index(dev.getNearestPowerOfTwoWorkGroupSize()),
383
- Index(EIGEN_SYCL_LOCAL_THREAD_DIM0 * EIGEN_SYCL_LOCAL_THREAD_DIM1));
384
-
385
- max_elements_per_block = local_range * ScanParameters<Index>::ScanPerThread;
386
-
387
- elements_per_group =
388
- dev.getPowerOfTwo(Index(roundUp(Index(scan_size), ScanParameters<Index>::ScanPerThread)), true);
389
- const Index elements_per_panel = elements_per_group * non_scan_size;
390
- elements_per_block = std::min(Index(elements_per_group), Index(max_elements_per_block));
391
- panel_threads = elements_per_panel / ScanParameters<Index>::ScanPerThread;
392
- group_threads = elements_per_group / ScanParameters<Index>::ScanPerThread;
393
- block_threads = elements_per_block / ScanParameters<Index>::ScanPerThread;
394
- block_size = elements_per_group / elements_per_block;
395
- #ifdef EIGEN_SYCL_MAX_GLOBAL_RANGE
396
- const Index max_threads = std::min(Index(panel_threads * panel_size), Index(EIGEN_SYCL_MAX_GLOBAL_RANGE));
397
- #else
398
- const Index max_threads = panel_threads * panel_size;
399
- #endif
400
- global_range = roundUp(max_threads, local_range);
401
- loop_range = Index(
402
- std::ceil(double(elements_per_panel * panel_size) / (global_range * ScanParameters<Index>::ScanPerThread)));
403
- }
404
- inline ScanParameters<Index> get_scan_parameter() {
405
- return ScanParameters<Index>(total_size, non_scan_size, scan_size, non_scan_stride, scan_stride, panel_threads,
406
- group_threads, block_threads, elements_per_group, elements_per_block, loop_range);
407
- }
408
- inline cl::sycl::nd_range<1> get_thread_range() {
409
- return cl::sycl::nd_range<1>(cl::sycl::range<1>(global_range), cl::sycl::range<1>(local_range));
410
- }
411
- };
412
-
413
- template <typename EvaluatorPointerType, typename CoeffReturnType, typename Reducer, typename Index>
414
- struct SYCLAdjustBlockOffset {
415
- EIGEN_STRONG_INLINE static void adjust_scan_block_offset(EvaluatorPointerType in_ptr, EvaluatorPointerType out_ptr,
416
- Reducer &accumulator, const Index total_size,
417
- const Index scan_size, const Index panel_size,
418
- const Index non_scan_size, const Index scan_stride,
419
- const Index non_scan_stride, const Eigen::SyclDevice &dev) {
420
- auto scan_info =
421
- ScanInfo<Index>(total_size, scan_size, panel_size, non_scan_size, scan_stride, non_scan_stride, dev);
422
-
423
- typedef ScanAdjustmentKernelFunctor<CoeffReturnType, EvaluatorPointerType, EvaluatorPointerType, Reducer, Index>
424
- AdjustFuctor;
425
- dev.template unary_kernel_launcher<CoeffReturnType, AdjustFuctor>(in_ptr, out_ptr, scan_info.get_thread_range(),
426
- scan_info.max_elements_per_block,
427
- scan_info.get_scan_parameter(), accumulator);
428
- }
429
- };
430
-
431
- template <typename CoeffReturnType, scan_step stp>
432
- struct ScanLauncher_impl {
433
- template <typename Input, typename EvaluatorPointerType, typename Reducer, typename Index>
434
- EIGEN_STRONG_INLINE static void scan_block(Input in_ptr, EvaluatorPointerType out_ptr, Reducer &accumulator,
435
- const Index total_size, const Index scan_size, const Index panel_size,
436
- const Index non_scan_size, const Index scan_stride,
437
- const Index non_scan_stride, const bool inclusive,
438
- const Eigen::SyclDevice &dev) {
439
- auto scan_info =
440
- ScanInfo<Index>(total_size, scan_size, panel_size, non_scan_size, scan_stride, non_scan_stride, dev);
441
- const Index temp_pointer_size = scan_info.block_size * non_scan_size * panel_size;
442
- const Index scratch_size = scan_info.max_elements_per_block / (ScanParameters<Index>::ScanPerThread / 2);
443
- CoeffReturnType *temp_pointer =
444
- static_cast<CoeffReturnType *>(dev.allocate_temp(temp_pointer_size * sizeof(CoeffReturnType)));
445
- EvaluatorPointerType tmp_global_accessor = dev.get(temp_pointer);
446
-
447
- typedef ScanKernelFunctor<Input, CoeffReturnType, EvaluatorPointerType, Reducer, Index, stp> ScanFunctor;
448
- dev.template binary_kernel_launcher<CoeffReturnType, ScanFunctor>(
449
- in_ptr, out_ptr, tmp_global_accessor, scan_info.get_thread_range(), scratch_size,
450
- scan_info.get_scan_parameter(), accumulator, inclusive);
451
-
452
- if (scan_info.block_size > 1) {
453
- ScanLauncher_impl<CoeffReturnType, scan_step::second>::scan_block(
454
- tmp_global_accessor, tmp_global_accessor, accumulator, temp_pointer_size, scan_info.block_size, panel_size,
455
- non_scan_size, Index(1), scan_info.block_size, false, dev);
456
-
457
- SYCLAdjustBlockOffset<EvaluatorPointerType, CoeffReturnType, Reducer, Index>::adjust_scan_block_offset(
458
- tmp_global_accessor, out_ptr, accumulator, total_size, scan_size, panel_size, non_scan_size, scan_stride,
459
- non_scan_stride, dev);
460
- }
461
- dev.deallocate_temp(temp_pointer);
462
- }
463
- };
464
-
465
- } // namespace internal
466
- } // namespace TensorSycl
467
- namespace internal {
468
- template <typename Self, typename Reducer, bool vectorize>
469
- struct ScanLauncher<Self, Reducer, Eigen::SyclDevice, vectorize> {
470
- typedef typename Self::Index Index;
471
- typedef typename Self::CoeffReturnType CoeffReturnType;
472
- typedef typename Self::Storage Storage;
473
- typedef typename Self::EvaluatorPointerType EvaluatorPointerType;
474
- void operator()(Self &self, EvaluatorPointerType data) {
475
- const Index total_size = internal::array_prod(self.dimensions());
476
- const Index scan_size = self.size();
477
- const Index scan_stride = self.stride();
478
- // this is the scan op (can be sum or ...)
479
- auto accumulator = self.accumulator();
480
- auto inclusive = !self.exclusive();
481
- auto consume_dim = self.consume_dim();
482
- auto dev = self.device();
483
-
484
- auto dims = self.inner().dimensions();
485
-
486
- Index non_scan_size = 1;
487
- Index panel_size = 1;
488
- if (static_cast<int>(Self::Layout) == static_cast<int>(ColMajor)) {
489
- for (int i = 0; i < consume_dim; i++) {
490
- non_scan_size *= dims[i];
491
- }
492
- for (int i = consume_dim + 1; i < Self::NumDims; i++) {
493
- panel_size *= dims[i];
494
- }
495
- } else {
496
- for (int i = Self::NumDims - 1; i > consume_dim; i--) {
497
- non_scan_size *= dims[i];
498
- }
499
- for (int i = consume_dim - 1; i >= 0; i--) {
500
- panel_size *= dims[i];
501
- }
502
- }
503
- const Index non_scan_stride = (scan_stride > 1) ? 1 : scan_size;
504
- auto eval_impl = self.inner();
505
- TensorSycl::internal::ScanLauncher_impl<CoeffReturnType, TensorSycl::internal::scan_step::first>::scan_block(
506
- eval_impl, data, accumulator, total_size, scan_size, panel_size, non_scan_size, scan_stride, non_scan_stride,
507
- inclusive, dev);
508
- }
509
- };
510
- } // namespace internal
511
- } // namespace Eigen
512
-
513
- #endif // UNSUPPORTED_EIGEN_CXX11_SRC_TENSOR_TENSOR_SYCL_SYCL_HPP