sequenzo 0.1.18__cp311-cp311-macosx_10_9_universal2.whl → 0.1.20__cp311-cp311-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h

@@ -1,236 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2016 Dmitry Vyukov <dvyukov@google.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_THREADPOOL_RUNQUEUE_H_
-#define EIGEN_CXX11_THREADPOOL_RUNQUEUE_H_
-
-namespace Eigen {
-
-// RunQueue is a fixed-size, partially non-blocking deque or Work items.
-// Operations on front of the queue must be done by a single thread (owner),
-// operations on back of the queue can be done by multiple threads concurrently.
-//
-// Algorithm outline:
-// All remote threads operating on the queue back are serialized by a mutex.
-// This ensures that at most two threads access state: owner and one remote
-// thread (Size aside). The algorithm ensures that the occupied region of the
-// underlying array is logically continuous (can wraparound, but no stray
-// occupied elements). Owner operates on one end of this region, remote thread
-// operates on the other end. Synchronization between these threads
-// (potential consumption of the last element and take up of the last empty
-// element) happens by means of state variable in each element. States are:
-// empty, busy (in process of insertion of removal) and ready. Threads claim
-// elements (empty->busy and ready->busy transitions) by means of a CAS
-// operation. The finishing transition (busy->empty and busy->ready) are done
-// with plain store as the element is exclusively owned by the current thread.
-//
-// Note: we could permit only pointers as elements, then we would not need
-// separate state variable as null/non-null pointer value would serve as state,
-// but that would require malloc/free per operation for large, complex values
-// (and this is designed to store std::function<()>).
-template <typename Work, unsigned kSize>
-class RunQueue {
- public:
-  RunQueue() : front_(0), back_(0) {
-    // require power-of-two for fast masking
-    eigen_plain_assert((kSize & (kSize - 1)) == 0);
-    eigen_plain_assert(kSize > 2);            // why would you do this?
-    eigen_plain_assert(kSize <= (64 << 10));  // leave enough space for counter
-    for (unsigned i = 0; i < kSize; i++)
-      array_[i].state.store(kEmpty, std::memory_order_relaxed);
-  }
-
-  ~RunQueue() { eigen_plain_assert(Size() == 0); }
-
-  // PushFront inserts w at the beginning of the queue.
-  // If queue is full returns w, otherwise returns default-constructed Work.
-  Work PushFront(Work w) {
-    unsigned front = front_.load(std::memory_order_relaxed);
-    Elem* e = &array_[front & kMask];
-    uint8_t s = e->state.load(std::memory_order_relaxed);
-    if (s != kEmpty ||
-        !e->state.compare_exchange_strong(s, kBusy, std::memory_order_acquire))
-      return w;
-    front_.store(front + 1 + (kSize << 1), std::memory_order_relaxed);
-    e->w = std::move(w);
-    e->state.store(kReady, std::memory_order_release);
-    return Work();
-  }
-
-  // PopFront removes and returns the first element in the queue.
-  // If the queue was empty returns default-constructed Work.
-  Work PopFront() {
-    unsigned front = front_.load(std::memory_order_relaxed);
-    Elem* e = &array_[(front - 1) & kMask];
-    uint8_t s = e->state.load(std::memory_order_relaxed);
-    if (s != kReady ||
-        !e->state.compare_exchange_strong(s, kBusy, std::memory_order_acquire))
-      return Work();
-    Work w = std::move(e->w);
-    e->state.store(kEmpty, std::memory_order_release);
-    front = ((front - 1) & kMask2) | (front & ~kMask2);
-    front_.store(front, std::memory_order_relaxed);
-    return w;
-  }
-
-  // PushBack adds w at the end of the queue.
-  // If queue is full returns w, otherwise returns default-constructed Work.
-  Work PushBack(Work w) {
-    std::unique_lock<std::mutex> lock(mutex_);
-    unsigned back = back_.load(std::memory_order_relaxed);
-    Elem* e = &array_[(back - 1) & kMask];
-    uint8_t s = e->state.load(std::memory_order_relaxed);
-    if (s != kEmpty ||
-        !e->state.compare_exchange_strong(s, kBusy, std::memory_order_acquire))
-      return w;
-    back = ((back - 1) & kMask2) | (back & ~kMask2);
-    back_.store(back, std::memory_order_relaxed);
-    e->w = std::move(w);
-    e->state.store(kReady, std::memory_order_release);
-    return Work();
-  }
-
-  // PopBack removes and returns the last elements in the queue.
-  Work PopBack() {
-    if (Empty()) return Work();
-    std::unique_lock<std::mutex> lock(mutex_);
-    unsigned back = back_.load(std::memory_order_relaxed);
-    Elem* e = &array_[back & kMask];
-    uint8_t s = e->state.load(std::memory_order_relaxed);
-    if (s != kReady ||
-        !e->state.compare_exchange_strong(s, kBusy, std::memory_order_acquire))
-      return Work();
-    Work w = std::move(e->w);
-    e->state.store(kEmpty, std::memory_order_release);
-    back_.store(back + 1 + (kSize << 1), std::memory_order_relaxed);
-    return w;
-  }
-
-  // PopBackHalf removes and returns half last elements in the queue.
-  // Returns number of elements removed.
-  unsigned PopBackHalf(std::vector<Work>* result) {
-    if (Empty()) return 0;
-    std::unique_lock<std::mutex> lock(mutex_);
-    unsigned back = back_.load(std::memory_order_relaxed);
-    unsigned size = Size();
-    unsigned mid = back;
-    if (size > 1) mid = back + (size - 1) / 2;
-    unsigned n = 0;
-    unsigned start = 0;
-    for (; static_cast<int>(mid - back) >= 0; mid--) {
-      Elem* e = &array_[mid & kMask];
-      uint8_t s = e->state.load(std::memory_order_relaxed);
-      if (n == 0) {
-        if (s != kReady || !e->state.compare_exchange_strong(
-                               s, kBusy, std::memory_order_acquire))
-          continue;
-        start = mid;
-      } else {
-        // Note: no need to store temporal kBusy, we exclusively own these
-        // elements.
-        eigen_plain_assert(s == kReady);
-      }
-      result->push_back(std::move(e->w));
-      e->state.store(kEmpty, std::memory_order_release);
-      n++;
-    }
-    if (n != 0)
-      back_.store(start + 1 + (kSize << 1), std::memory_order_relaxed);
-    return n;
-  }
-
-  // Size returns current queue size.
-  // Can be called by any thread at any time.
-  unsigned Size() const { return SizeOrNotEmpty<true>(); }
-
-  // Empty tests whether container is empty.
-  // Can be called by any thread at any time.
-  bool Empty() const { return SizeOrNotEmpty<false>() == 0; }
-
-  // Delete all the elements from the queue.
-  void Flush() {
-    while (!Empty()) {
-      PopFront();
-    }
-  }
-
- private:
-  static const unsigned kMask = kSize - 1;
-  static const unsigned kMask2 = (kSize << 1) - 1;
-  struct Elem {
-    std::atomic<uint8_t> state;
-    Work w;
-  };
-  enum {
-    kEmpty,
-    kBusy,
-    kReady,
-  };
-  std::mutex mutex_;
-  // Low log(kSize) + 1 bits in front_ and back_ contain rolling index of
-  // front/back, respectively. The remaining bits contain modification counters
-  // that are incremented on Push operations. This allows us to (1) distinguish
-  // between empty and full conditions (if we would use log(kSize) bits for
-  // position, these conditions would be indistinguishable); (2) obtain
-  // consistent snapshot of front_/back_ for Size operation using the
-  // modification counters.
-  std::atomic<unsigned> front_;
-  std::atomic<unsigned> back_;
-  Elem array_[kSize];
-
-  // SizeOrNotEmpty returns current queue size; if NeedSizeEstimate is false,
-  // only whether the size is 0 is guaranteed to be correct.
-  // Can be called by any thread at any time.
-  template<bool NeedSizeEstimate>
-  unsigned SizeOrNotEmpty() const {
-    // Emptiness plays critical role in thread pool blocking. So we go to great
-    // effort to not produce false positives (claim non-empty queue as empty).
-    unsigned front = front_.load(std::memory_order_acquire);
-    for (;;) {
-      // Capture a consistent snapshot of front/tail.
-      unsigned back = back_.load(std::memory_order_acquire);
-      unsigned front1 = front_.load(std::memory_order_relaxed);
-      if (front != front1) {
-        front = front1;
-        std::atomic_thread_fence(std::memory_order_acquire);
-        continue;
-      }
-      if (NeedSizeEstimate) {
-        return CalculateSize(front, back);
-      } else {
-        // This value will be 0 if the queue is empty, and undefined otherwise.
-        unsigned maybe_zero = ((front ^ back) & kMask2);
-        // Queue size estimate must agree with maybe zero check on the queue
-        // empty/non-empty state.
-        eigen_assert((CalculateSize(front, back) == 0) == (maybe_zero == 0));
-        return maybe_zero;
-      }
-    }
-  }
-
-  EIGEN_ALWAYS_INLINE
-  unsigned CalculateSize(unsigned front, unsigned back) const {
-    int size = (front & kMask2) - (back & kMask2);
-    // Fix overflow.
-    if (size < 0) size += 2 * kSize;
-    // Order of modification in push/pop is crafted to make the queue look
-    // larger than it is during concurrent modifications. E.g. push can
-    // increment size before the corresponding pop has decremented it.
-    // So the computed size can be up to kSize + 1, fix it.
-    if (size > static_cast<int>(kSize)) size = kSize;
-    return static_cast<unsigned>(size);
-  }
-
-  RunQueue(const RunQueue&) = delete;
-  void operator=(const RunQueue&) = delete;
-};
-
-}  // namespace Eigen
-
-#endif  // EIGEN_CXX11_THREADPOOL_RUNQUEUE_H_

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h

@@ -1,23 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2016 Benoit Steiner <benoit.steiner.goog@gmail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_THREADPOOL_THREAD_CANCEL_H
-#define EIGEN_CXX11_THREADPOOL_THREAD_CANCEL_H
-
-// Try to come up with a portable way to cancel a thread
-#if EIGEN_OS_GNULINUX
-  #define EIGEN_THREAD_CANCEL(t)                  \
-    pthread_cancel(t.native_handle());
-  #define EIGEN_SUPPORTS_THREAD_CANCELLATION 1
-#else
-#define EIGEN_THREAD_CANCEL(t)
-#endif
-
-
-#endif  // EIGEN_CXX11_THREADPOOL_THREAD_CANCEL_H

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h

@@ -1,40 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_THREADPOOL_THREAD_ENVIRONMENT_H
-#define EIGEN_CXX11_THREADPOOL_THREAD_ENVIRONMENT_H
-
-namespace Eigen {
-
-struct StlThreadEnvironment {
-  struct Task {
-    std::function<void()> f;
-  };
-
-  // EnvThread constructor must start the thread,
-  // destructor must join the thread.
-  class EnvThread {
-   public:
-    EnvThread(std::function<void()> f) : thr_(std::move(f)) {}
-    ~EnvThread() { thr_.join(); }
-    // This function is called when the threadpool is cancelled.
-    void OnCancel() { }
-
-   private:
-    std::thread thr_;
-  };
-
-  EnvThread* CreateThread(std::function<void()> f) { return new EnvThread(std::move(f)); }
-  Task CreateTask(std::function<void()> f) { return Task{std::move(f)}; }
-  void ExecuteTask(const Task& t) { t.f(); }
-};
-
-}  // namespace Eigen
-
-#endif  // EIGEN_CXX11_THREADPOOL_THREAD_ENVIRONMENT_H

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h

@@ -1,301 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2016 Benoit Steiner <benoit.steiner.goog@gmail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_THREADPOOL_THREAD_LOCAL_H
-#define EIGEN_CXX11_THREADPOOL_THREAD_LOCAL_H
-
-#ifdef EIGEN_AVOID_THREAD_LOCAL
-
-#ifdef EIGEN_THREAD_LOCAL
-#undef EIGEN_THREAD_LOCAL
-#endif
-
-#else
-
-#if EIGEN_MAX_CPP_VER >= 11 &&                         \
-    ((EIGEN_COMP_GNUC && EIGEN_GNUC_AT_LEAST(4, 8)) || \
-     __has_feature(cxx_thread_local)                || \
-     (EIGEN_COMP_MSVC >= 1900) )
-#define EIGEN_THREAD_LOCAL static thread_local
-#endif
-
-// Disable TLS for Apple and Android builds with older toolchains.
-#if defined(__APPLE__)
-// Included for TARGET_OS_IPHONE, __IPHONE_OS_VERSION_MIN_REQUIRED,
-// __IPHONE_8_0.
-#include <Availability.h>
-#include <TargetConditionals.h>
-#endif
-// Checks whether C++11's `thread_local` storage duration specifier is
-// supported.
-#if defined(__apple_build_version__) &&     \
-    ((__apple_build_version__ < 8000042) || \
-     (TARGET_OS_IPHONE && __IPHONE_OS_VERSION_MIN_REQUIRED < __IPHONE_9_0))
-// Notes: Xcode's clang did not support `thread_local` until version
-// 8, and even then not for all iOS < 9.0.
-#undef EIGEN_THREAD_LOCAL
-
-#elif defined(__ANDROID__) && EIGEN_COMP_CLANG
-// There are platforms for which TLS should not be used even though the compiler
-// makes it seem like it's supported (Android NDK < r12b for example).
-// This is primarily because of linker problems and toolchain misconfiguration:
-// TLS isn't supported until NDK r12b per
-// https://developer.android.com/ndk/downloads/revision_history.html
-// Since NDK r16, `__NDK_MAJOR__` and `__NDK_MINOR__` are defined in
-// <android/ndk-version.h>. For NDK < r16, users should define these macros,
-// e.g. `-D__NDK_MAJOR__=11 -D__NKD_MINOR__=0` for NDK r11.
-#if __has_include(<android/ndk-version.h>)
-#include <android/ndk-version.h>
-#endif  // __has_include(<android/ndk-version.h>)
-#if defined(__ANDROID__) && defined(__clang__) && defined(__NDK_MAJOR__) && \
-    defined(__NDK_MINOR__) &&                                               \
-    ((__NDK_MAJOR__ < 12) || ((__NDK_MAJOR__ == 12) && (__NDK_MINOR__ < 1)))
-#undef EIGEN_THREAD_LOCAL
-#endif
-#endif  // defined(__ANDROID__) && defined(__clang__)
-
-#endif  // EIGEN_AVOID_THREAD_LOCAL
-
-namespace Eigen {
-
-namespace internal {
-template <typename T>
-struct ThreadLocalNoOpInitialize {
-  void operator()(T&) const {}
-};
-
-template <typename T>
-struct ThreadLocalNoOpRelease {
-  void operator()(T&) const {}
-};
-
-}  // namespace internal
-
-// Thread local container for elements of type T, that does not use thread local
-// storage. As long as the number of unique threads accessing this storage
-// is smaller than `capacity_`, it is lock-free and wait-free. Otherwise it will
-// use a mutex for synchronization.
-//
-// Type `T` has to be default constructible, and by default each thread will get
-// a default constructed value. It is possible to specify custom `initialize`
-// callable, that will be called lazily from each thread accessing this object,
-// and will be passed a default initialized object of type `T`. Also it's
-// possible to pass a custom `release` callable, that will be invoked before
-// calling ~T().
-//
-// Example:
-//
-//   struct Counter {
-//     int value = 0;
-//   }
-//
-//   Eigen::ThreadLocal<Counter> counter(10);
-//
-//   // Each thread will have access to it's own counter object.
-//   Counter& cnt = counter.local();
-//   cnt++;
-//
-// WARNING: Eigen::ThreadLocal uses the OS-specific value returned by
-// std::this_thread::get_id() to identify threads. This value is not guaranteed
-// to be unique except for the life of the thread. A newly created thread may
-// get an OS-specific ID equal to that of an already destroyed thread.
-//
-// Somewhat similar to TBB thread local storage, with similar restrictions:
-// https://www.threadingbuildingblocks.org/docs/help/reference/thread_local_storage/enumerable_thread_specific_cls.html
-//
-template <typename T,
-          typename Initialize = internal::ThreadLocalNoOpInitialize<T>,
-          typename Release = internal::ThreadLocalNoOpRelease<T>>
-class ThreadLocal {
-  // We preallocate default constructed elements in MaxSizedVector.
-  static_assert(std::is_default_constructible<T>::value,
-                "ThreadLocal data type must be default constructible");
-
- public:
-  explicit ThreadLocal(int capacity)
-      : ThreadLocal(capacity, internal::ThreadLocalNoOpInitialize<T>(),
-                    internal::ThreadLocalNoOpRelease<T>()) {}
-
-  ThreadLocal(int capacity, Initialize initialize)
-      : ThreadLocal(capacity, std::move(initialize),
-                    internal::ThreadLocalNoOpRelease<T>()) {}
-
-  ThreadLocal(int capacity, Initialize initialize, Release release)
-      : initialize_(std::move(initialize)),
-        release_(std::move(release)),
-        capacity_(capacity),
-        data_(capacity_),
-        ptr_(capacity_),
-        filled_records_(0) {
-    eigen_assert(capacity_ >= 0);
-    data_.resize(capacity_);
-    for (int i = 0; i < capacity_; ++i) {
-      ptr_.emplace_back(nullptr);
-    }
-  }
-
-  T& local() {
-    std::thread::id this_thread = std::this_thread::get_id();
-    if (capacity_ == 0) return SpilledLocal(this_thread);
-
-    std::size_t h = std::hash<std::thread::id>()(this_thread);
-    const int start_idx = h % capacity_;
-
-    // NOTE: From the definition of `std::this_thread::get_id()` it is
-    // guaranteed that we never can have concurrent insertions with the same key
-    // to our hash-map like data structure. If we didn't find an element during
-    // the initial traversal, it's guaranteed that no one else could have
-    // inserted it while we are in this function. This allows to massively
-    // simplify out lock-free insert-only hash map.
-
-    // Check if we already have an element for `this_thread`.
-    int idx = start_idx;
-    while (ptr_[idx].load() != nullptr) {
-      ThreadIdAndValue& record = *(ptr_[idx].load());
-      if (record.thread_id == this_thread) return record.value;
-
-      idx += 1;
-      if (idx >= capacity_) idx -= capacity_;
-      if (idx == start_idx) break;
-    }
-
-    // If we are here, it means that we found an insertion point in lookup
-    // table at `idx`, or we did a full traversal and table is full.
-
-    // If lock-free storage is full, fallback on mutex.
-    if (filled_records_.load() >= capacity_) return SpilledLocal(this_thread);
-
-    // We double check that we still have space to insert an element into a lock
-    // free storage. If old value in `filled_records_` is larger than the
-    // records capacity, it means that some other thread added an element while
-    // we were traversing lookup table.
-    int insertion_index =
-        filled_records_.fetch_add(1, std::memory_order_relaxed);
-    if (insertion_index >= capacity_) return SpilledLocal(this_thread);
-
-    // At this point it's guaranteed that we can access to
-    // data_[insertion_index_] without a data race.
-    data_[insertion_index].thread_id = this_thread;
-    initialize_(data_[insertion_index].value);
-
-    // That's the pointer we'll put into the lookup table.
-    ThreadIdAndValue* inserted = &data_[insertion_index];
-
-    // We'll use nullptr pointer to ThreadIdAndValue in a compare-and-swap loop.
-    ThreadIdAndValue* empty = nullptr;
-
-    // Now we have to find an insertion point into the lookup table. We start
-    // from the `idx` that was identified as an insertion point above, it's
-    // guaranteed that we will have an empty record somewhere in a lookup table
-    // (because we created a record in the `data_`).
-    const int insertion_idx = idx;
-
-    do {
-      // Always start search from the original insertion candidate.
-      idx = insertion_idx;
-      while (ptr_[idx].load() != nullptr) {
-        idx += 1;
-        if (idx >= capacity_) idx -= capacity_;
-        // If we did a full loop, it means that we don't have any free entries
-        // in the lookup table, and this means that something is terribly wrong.
-        eigen_assert(idx != insertion_idx);
-      }
-      // Atomic CAS of the pointer guarantees that any other thread, that will
-      // follow this pointer will see all the mutations in the `data_`.
-    } while (!ptr_[idx].compare_exchange_weak(empty, inserted));
-
-    return inserted->value;
-  }
-
-  // WARN: It's not thread safe to call it concurrently with `local()`.
-  void ForEach(std::function<void(std::thread::id, T&)> f) {
-    // Reading directly from `data_` is unsafe, because only CAS to the
-    // record in `ptr_` makes all changes visible to other threads.
-    for (auto& ptr : ptr_) {
-      ThreadIdAndValue* record = ptr.load();
-      if (record == nullptr) continue;
-      f(record->thread_id, record->value);
-    }
-
-    // We did not spill into the map based storage.
-    if (filled_records_.load(std::memory_order_relaxed) < capacity_) return;
-
-    // Adds a happens before edge from the last call to SpilledLocal().
-    std::unique_lock<std::mutex> lock(mu_);
-    for (auto& kv : per_thread_map_) {
-      f(kv.first, kv.second);
-    }
-  }
-
-  // WARN: It's not thread safe to call it concurrently with `local()`.
-  ~ThreadLocal() {
-    // Reading directly from `data_` is unsafe, because only CAS to the record
-    // in `ptr_` makes all changes visible to other threads.
-    for (auto& ptr : ptr_) {
-      ThreadIdAndValue* record = ptr.load();
-      if (record == nullptr) continue;
-      release_(record->value);
-    }
-
-    // We did not spill into the map based storage.
-    if (filled_records_.load(std::memory_order_relaxed) < capacity_) return;
-
-    // Adds a happens before edge from the last call to SpilledLocal().
-    std::unique_lock<std::mutex> lock(mu_);
-    for (auto& kv : per_thread_map_) {
-      release_(kv.second);
-    }
-  }
-
- private:
-  struct ThreadIdAndValue {
-    std::thread::id thread_id;
-    T value;
-  };
-
-  // Use unordered map guarded by a mutex when lock free storage is full.
-  T& SpilledLocal(std::thread::id this_thread) {
-    std::unique_lock<std::mutex> lock(mu_);
-
-    auto it = per_thread_map_.find(this_thread);
-    if (it == per_thread_map_.end()) {
-      auto result = per_thread_map_.emplace(this_thread, T());
-      eigen_assert(result.second);
-      initialize_((*result.first).second);
-      return (*result.first).second;
-    } else {
-      return it->second;
-    }
-  }
-
-  Initialize initialize_;
-  Release release_;
-  const int capacity_;
-
-  // Storage that backs lock-free lookup table `ptr_`. Records stored in this
-  // storage contiguously starting from index 0.
-  MaxSizeVector<ThreadIdAndValue> data_;
-
-  // Atomic pointers to the data stored in `data_`. Used as a lookup table for
-  // linear probing hash map (https://en.wikipedia.org/wiki/Linear_probing).
-  MaxSizeVector<std::atomic<ThreadIdAndValue*>> ptr_;
-
-  // Number of records stored in the `data_`.
-  std::atomic<int> filled_records_;
-
-  // We fallback on per thread map if lock-free storage is full. In practice
-  // this should never happen, if `capacity_` is a reasonable estimate of the
-  // number of threads running in a system.
-  std::mutex mu_;  // Protects per_thread_map_.
-  std::unordered_map<std::thread::id, T> per_thread_map_;
-};
-
-}  // namespace Eigen
-
-#endif  // EIGEN_CXX11_THREADPOOL_THREAD_LOCAL_H

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h

@@ -1,48 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_THREADPOOL_THREAD_POOL_INTERFACE_H
-#define EIGEN_CXX11_THREADPOOL_THREAD_POOL_INTERFACE_H
-
-namespace Eigen {
-
-// This defines an interface that ThreadPoolDevice can take to use
-// custom thread pools underneath.
-class ThreadPoolInterface {
- public:
-  // Submits a closure to be run by a thread in the pool.
-  virtual void Schedule(std::function<void()> fn) = 0;
-
-  // Submits a closure to be run by threads in the range [start, end) in the
-  // pool.
-  virtual void ScheduleWithHint(std::function<void()> fn, int /*start*/,
-                                int /*end*/) {
-    // Just defer to Schedule in case sub-classes aren't interested in
-    // overriding this functionality.
-    Schedule(fn);
-  }
-
-  // If implemented, stop processing the closures that have been enqueued.
-  // Currently running closures may still be processed.
-  // If not implemented, does nothing.
-  virtual void Cancel() {}
-
-  // Returns the number of threads in the pool.
-  virtual int NumThreads() const = 0;
-
-  // Returns a logical thread index between 0 and NumThreads() - 1 if called
-  // from one of the threads in the pool. Returns -1 otherwise.
-  virtual int CurrentThreadId() const = 0;
-
-  virtual ~ThreadPoolInterface() {}
-};
-
-}  // namespace Eigen
-
-#endif  // EIGEN_CXX11_THREADPOOL_THREAD_POOL_INTERFACE_H

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h

@@ -1,20 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2016 Benoit Steiner <benoit.steiner.goog@gmail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_THREADPOOL_THREAD_YIELD_H
-#define EIGEN_CXX11_THREADPOOL_THREAD_YIELD_H
-
-// Try to come up with a portable way to yield
-#if EIGEN_COMP_GNUC && EIGEN_GNUC_AT_MOST(4, 7)
-#define EIGEN_THREAD_YIELD() sched_yield()
-#else
-#define EIGEN_THREAD_YIELD() std::this_thread::yield()
-#endif
-
-#endif  // EIGEN_CXX11_THREADPOOL_THREAD_YIELD_H