sequenzo 0.1.18__cp311-cp311-macosx_10_9_universal2.whl → 0.1.20__cp311-cp311-macosx_10_9_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (360) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-311-darwin.so +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/hierarchical_clustering.py +108 -6
  6. sequenzo/define_sequence_data.py +10 -1
  7. sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
  8. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  9. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
  10. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-311-darwin.so +0 -0
  11. sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
  12. sequenzo/dissimilarity_measures/utils/seqconc.cpython-311-darwin.so +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
  14. sequenzo/dissimilarity_measures/utils/seqdss.cpython-311-darwin.so +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
  16. sequenzo/dissimilarity_measures/utils/seqdur.cpython-311-darwin.so +0 -0
  17. sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
  18. sequenzo/dissimilarity_measures/utils/seqlength.cpython-311-darwin.so +0 -0
  19. sequenzo/multidomain/cat.py +0 -53
  20. sequenzo/multidomain/dat.py +11 -3
  21. sequenzo/multidomain/idcd.py +0 -3
  22. sequenzo/multidomain/linked_polyad.py +0 -1
  23. sequenzo/openmp_setup.py +233 -0
  24. sequenzo/visualization/plot_transition_matrix.py +21 -22
  25. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
  26. sequenzo-0.1.20.dist-info/RECORD +215 -0
  27. sequenzo/dissimilarity_measures/setup.py +0 -35
  28. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  29. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  170. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  171. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  172. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  173. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  174. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  175. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  176. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  177. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  178. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  179. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  180. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  181. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  182. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  183. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  184. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  185. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  186. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  187. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  188. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  189. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  190. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  191. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  192. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  193. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  194. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  195. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  196. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  197. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  198. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  199. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  200. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  201. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  202. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  203. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  204. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  205. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  206. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  207. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  208. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  209. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  210. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  211. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  212. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  213. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  214. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  215. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  216. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  217. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  218. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  219. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  220. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  221. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  222. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  223. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  224. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  225. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  226. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  357. sequenzo-0.1.18.dist-info/RECORD +0 -544
  358. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/WHEEL +0 -0
  359. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE +0 -0
  360. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/top_level.txt +0 -0
@@ -1,703 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_EXECUTOR_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_EXECUTOR_H
12
-
13
- namespace Eigen {
14
-
15
- /**
16
- * \class TensorExecutor
17
- * \ingroup CXX11_Tensor_Module
18
- *
19
- * \brief The tensor executor class.
20
- *
21
- * This class is responsible for launch the evaluation of the expression on
22
- * the specified computing device.
23
- *
24
- * @tparam Vectorizable can use packet math (SSE/AVX/etc... registers and
25
- * instructions)
26
- * @tparam Tiling can use block based tensor evaluation
27
- * (see TensorBlock.h)
28
- */
29
- namespace internal {
30
-
31
- /**
32
- * Evaluating TensorBroadcastingOp via coefficient of packet path is extremely
33
- * expensive. If expression has at least one broadcast op in it, and it supports
34
- * block based evaluation, we always prefer it, even for the small tensors. For
35
- * all other tileable ops, block evaluation overhead for small tensors (fits
36
- * into L1) is too large, and we fallback on vectorized evaluation.
37
- */
38
-
39
- // TODO(ezhulenev): Add specializations for all other types of Tensor ops.
40
-
41
- template<typename Expression>
42
- struct ExpressionHasTensorBroadcastingOp {
43
- enum { value = false };
44
- };
45
-
46
- template<typename LhsXprType, typename RhsXprType>
47
- struct ExpressionHasTensorBroadcastingOp<
48
- const TensorAssignOp<LhsXprType, RhsXprType> > {
49
- enum { value = ExpressionHasTensorBroadcastingOp<RhsXprType>::value };
50
- };
51
-
52
- template<typename UnaryOp, typename XprType>
53
- struct ExpressionHasTensorBroadcastingOp<
54
- const TensorCwiseUnaryOp<UnaryOp, XprType> > {
55
- enum { value = ExpressionHasTensorBroadcastingOp<XprType>::value };
56
- };
57
-
58
- template<typename BinaryOp, typename LhsXprType, typename RhsXprType>
59
- struct ExpressionHasTensorBroadcastingOp<
60
- const TensorCwiseBinaryOp<BinaryOp, LhsXprType, RhsXprType> > {
61
- enum {
62
- value = ExpressionHasTensorBroadcastingOp<LhsXprType>::value ||
63
- ExpressionHasTensorBroadcastingOp<RhsXprType>::value
64
- };
65
- };
66
-
67
- template<typename Broadcast, typename XprType>
68
- struct ExpressionHasTensorBroadcastingOp<
69
- const TensorBroadcastingOp<Broadcast, XprType> > {
70
- enum { value = true };
71
- };
72
-
73
- // -------------------------------------------------------------------------- //
74
-
75
- /**
76
- * Default strategy: the expression is evaluated sequentially with a single cpu
77
- * thread, without vectorization and block evaluation.
78
- */
79
- template <typename Expression, typename Device, bool Vectorizable,
80
- TiledEvaluation Tiling>
81
- class TensorExecutor {
82
- public:
83
- typedef typename Expression::Index StorageIndex;
84
-
85
- // Including `unsupported/Eigen/CXX11/Tensor` in different translation units
86
- // with/without `EIGEN_USE_THREADS` or `EIGEN_USE_GPU` is a potential ODR
87
- // violation. If this template is instantiated with a non-default device, it
88
- // means that this header file was included without defining
89
- // `EIGEN_USE_THREADS`, `EIGEN_USE_GPU` or `EIGEN_USE_SYCL`.
90
- static_assert(std::is_same<Device, DefaultDevice>::value,
91
- "Default executor instantiated with non-default device. "
92
- "You must #define EIGEN_USE_THREADS, EIGEN_USE_GPU or "
93
- "EIGEN_USE_SYCL before including Eigen headers.");
94
-
95
- EIGEN_DEVICE_FUNC
96
- static EIGEN_STRONG_INLINE void run(const Expression& expr,
97
- const Device& device = Device()) {
98
- TensorEvaluator<Expression, Device> evaluator(expr, device);
99
- const bool needs_assign = evaluator.evalSubExprsIfNeeded(NULL);
100
- if (needs_assign) {
101
- const StorageIndex size = array_prod(evaluator.dimensions());
102
- for (StorageIndex i = 0; i < size; ++i) {
103
- evaluator.evalScalar(i);
104
- }
105
- }
106
- evaluator.cleanup();
107
- }
108
- };
109
-
110
- /**
111
- * Default async execution strategy is not implemented. Currently it's only
112
- * available for ThreadPoolDevice (see definition below).
113
- */
114
- template <typename Expression, typename Device, typename DoneCallback,
115
- bool Vectorizable, TiledEvaluation Tiling>
116
- class TensorAsyncExecutor {};
117
-
118
- /**
119
- * Process all the data with a single cpu thread, using vectorized instructions.
120
- */
121
- template <typename Expression>
122
- class TensorExecutor<Expression, DefaultDevice, /*Vectorizable=*/true,
123
- /*Tiling=*/TiledEvaluation::Off> {
124
- public:
125
- typedef typename Expression::Index StorageIndex;
126
-
127
- EIGEN_DEVICE_FUNC
128
- static EIGEN_STRONG_INLINE void run(
129
- const Expression& expr, const DefaultDevice& device = DefaultDevice()) {
130
- TensorEvaluator<Expression, DefaultDevice> evaluator(expr, device);
131
- const bool needs_assign = evaluator.evalSubExprsIfNeeded(NULL);
132
- if (needs_assign) {
133
- const StorageIndex size = array_prod(evaluator.dimensions());
134
- const int PacketSize = unpacket_traits<typename TensorEvaluator<
135
- Expression, DefaultDevice>::PacketReturnType>::size;
136
-
137
- // Give compiler a strong possibility to unroll the loop. But don't insist
138
- // on unrolling, because if the function is expensive compiler should not
139
- // unroll the loop at the expense of inlining.
140
- const StorageIndex UnrolledSize =
141
- (size / (4 * PacketSize)) * 4 * PacketSize;
142
- for (StorageIndex i = 0; i < UnrolledSize; i += 4 * PacketSize) {
143
- for (StorageIndex j = 0; j < 4; j++) {
144
- evaluator.evalPacket(i + j * PacketSize);
145
- }
146
- }
147
- const StorageIndex VectorizedSize = (size / PacketSize) * PacketSize;
148
- for (StorageIndex i = UnrolledSize; i < VectorizedSize; i += PacketSize) {
149
- evaluator.evalPacket(i);
150
- }
151
- for (StorageIndex i = VectorizedSize; i < size; ++i) {
152
- evaluator.evalScalar(i);
153
- }
154
- }
155
- evaluator.cleanup();
156
- }
157
- };
158
-
159
- /**
160
- * Process all the data with a single cpu thread, using blocks of data. By
161
- * sizing a block to fit L1 cache we get better cache performance.
162
- */
163
- template <typename Expression, bool Vectorizable>
164
- class TensorExecutor<Expression, DefaultDevice, Vectorizable,
165
- /*Tiling=*/TiledEvaluation::On> {
166
- public:
167
- typedef typename traits<Expression>::Scalar Scalar;
168
- typedef typename remove_const<Scalar>::type ScalarNoConst;
169
-
170
- typedef TensorEvaluator<Expression, DefaultDevice> Evaluator;
171
- typedef typename traits<Expression>::Index StorageIndex;
172
-
173
- static const int NumDims = traits<Expression>::NumDimensions;
174
-
175
- EIGEN_DEVICE_FUNC
176
- static EIGEN_STRONG_INLINE void run(const Expression& expr,
177
- const DefaultDevice& device = DefaultDevice()) {
178
- typedef TensorBlockMapper<NumDims, Evaluator::Layout, StorageIndex>
179
- TensorBlockMapper;
180
-
181
- typedef internal::TensorBlockDescriptor<NumDims, StorageIndex>
182
- TensorBlockDesc;
183
- typedef internal::TensorBlockScratchAllocator<DefaultDevice>
184
- TensorBlockScratch;
185
-
186
- Evaluator evaluator(expr, device);
187
-
188
- // TODO(ezhulenev): Do not use tiling for small tensors?
189
- const bool needs_assign = evaluator.evalSubExprsIfNeeded(NULL);
190
-
191
- if (needs_assign) {
192
- // Query expression tree for desired block size/shape.
193
- const TensorBlockResourceRequirements requirements =
194
- evaluator.getResourceRequirements();
195
-
196
- const TensorBlockMapper block_mapper(
197
- typename TensorBlockDesc::Dimensions(evaluator.dimensions()),
198
- requirements);
199
-
200
- // Share scratch memory allocator between all blocks.
201
- TensorBlockScratch scratch(device);
202
-
203
- const StorageIndex total_block_count = block_mapper.blockCount();
204
- for (StorageIndex i = 0; i < total_block_count; ++i) {
205
- TensorBlockDesc desc = block_mapper.blockDescriptor(i);
206
- evaluator.evalBlock(desc, scratch);
207
- scratch.reset();
208
- }
209
- }
210
- evaluator.cleanup();
211
- }
212
- };
213
-
214
- /**
215
- * Multicore strategy: the index space is partitioned and each partition is
216
- * executed on a single core.
217
- *
218
- * (1) TensorExecutor will submit work to the ThreadPoolDevice managed thread
219
- * pool, and will block the caller thread until all tasks are finished.
220
- *
221
- * (2) TensorAsyncExecutor is a non-blocking version, that will submit work to
222
- * the ThreadPoolDevice managed thread pool, and will return immediately.
223
- * It will call 'done' callback after all tasks are finished.
224
- */
225
- #ifdef EIGEN_USE_THREADS
226
-
227
- template <typename TensorBlockMapper>
228
- struct TensorExecutorTilingContext {
229
- TensorExecutorTilingContext() = default;
230
- TensorExecutorTilingContext(const TensorBlockMapper& b_mapper,
231
- const TensorOpCost& b_cost, size_t b_aligned_size)
232
- : block_mapper(b_mapper),
233
- cost(b_cost),
234
- aligned_blocksize(b_aligned_size) {}
235
-
236
- TensorBlockMapper block_mapper; // navigate through blocks
237
- TensorOpCost cost; // cost of computing a single block
238
- size_t aligned_blocksize; // block size after memory alignment
239
- };
240
-
241
- // Computes a block evaluation parameters, and allocates temporary memory buffer
242
- // for blocks. See TensorExecutor/TensorAsyncExecutor (Tiling=On) below.
243
- template <typename Evaluator, typename TensorBlockMapper, bool Vectorizable>
244
- TensorExecutorTilingContext<TensorBlockMapper> GetTensorExecutorTilingContext(
245
- const Evaluator& evaluator) {
246
- // Query expression tree for desired block size/shape.
247
- TensorBlockResourceRequirements requirements =
248
- evaluator.getResourceRequirements();
249
-
250
- // Update target block size based on cost model.
251
- double taskSize = TensorCostModel<ThreadPoolDevice>::taskSize(
252
- 1, requirements.cost_per_coeff);
253
- requirements.size = static_cast<size_t>(1.0 / taskSize);
254
-
255
- TensorBlockMapper block_mapper(
256
- typename TensorBlockMapper::Dimensions(evaluator.dimensions()),
257
- requirements);
258
-
259
- size_t block_size = block_mapper.blockTotalSize();
260
- const size_t align = numext::maxi(EIGEN_MAX_ALIGN_BYTES, 1);
261
- const size_t aligned_blocksize =
262
- align *
263
- divup<size_t>(block_size * sizeof(typename Evaluator::Scalar), align);
264
-
265
- return {block_mapper, requirements.cost_per_coeff * block_size,
266
- aligned_blocksize};
267
- }
268
-
269
- template <typename Evaluator, typename StorageIndex, bool Vectorizable>
270
- struct EvalRange {
271
- static void run(Evaluator* evaluator_in, const StorageIndex firstIdx,
272
- const StorageIndex lastIdx) {
273
- Evaluator evaluator = *evaluator_in;
274
- eigen_assert(lastIdx >= firstIdx);
275
- for (StorageIndex i = firstIdx; i < lastIdx; ++i) {
276
- evaluator.evalScalar(i);
277
- }
278
- }
279
-
280
- static StorageIndex alignBlockSize(StorageIndex size) { return size; }
281
- };
282
-
283
- template <typename Evaluator, typename StorageIndex>
284
- struct EvalRange<Evaluator, StorageIndex, /*Vectorizable*/ true> {
285
- static const int PacketSize =
286
- unpacket_traits<typename Evaluator::PacketReturnType>::size;
287
-
288
- static void run(Evaluator* evaluator_in, const StorageIndex firstIdx,
289
- const StorageIndex lastIdx) {
290
- Evaluator evaluator = *evaluator_in;
291
- eigen_assert(lastIdx >= firstIdx);
292
- StorageIndex i = firstIdx;
293
- if (lastIdx - firstIdx >= PacketSize) {
294
- eigen_assert(firstIdx % PacketSize == 0);
295
- StorageIndex last_chunk_offset = lastIdx - 4 * PacketSize;
296
- // Give compiler a strong possibility to unroll the loop. But don't insist
297
- // on unrolling, because if the function is expensive compiler should not
298
- // unroll the loop at the expense of inlining.
299
- for (; i <= last_chunk_offset; i += 4 * PacketSize) {
300
- for (StorageIndex j = 0; j < 4; j++) {
301
- evaluator.evalPacket(i + j * PacketSize);
302
- }
303
- }
304
- last_chunk_offset = lastIdx - PacketSize;
305
- for (; i <= last_chunk_offset; i += PacketSize) {
306
- evaluator.evalPacket(i);
307
- }
308
- }
309
- for (; i < lastIdx; ++i) {
310
- evaluator.evalScalar(i);
311
- }
312
- }
313
-
314
- static StorageIndex alignBlockSize(StorageIndex size) {
315
- // Align block size to packet size and account for unrolling in run above.
316
- if (size >= 16 * PacketSize) {
317
- return (size + 4 * PacketSize - 1) & ~(4 * PacketSize - 1);
318
- }
319
- // Aligning to 4 * PacketSize would increase block size by more than 25%.
320
- return (size + PacketSize - 1) & ~(PacketSize - 1);
321
- }
322
- };
323
-
324
- template <typename Expression, bool Vectorizable, TiledEvaluation Tiling>
325
- class TensorExecutor<Expression, ThreadPoolDevice, Vectorizable, Tiling> {
326
- public:
327
- typedef typename Expression::Index StorageIndex;
328
-
329
- static EIGEN_STRONG_INLINE void run(const Expression& expr,
330
- const ThreadPoolDevice& device) {
331
- typedef TensorEvaluator<Expression, ThreadPoolDevice> Evaluator;
332
- typedef EvalRange<Evaluator, StorageIndex, Vectorizable> EvalRange;
333
-
334
- Evaluator evaluator(expr, device);
335
- const bool needs_assign = evaluator.evalSubExprsIfNeeded(nullptr);
336
- if (needs_assign) {
337
- const StorageIndex size = array_prod(evaluator.dimensions());
338
- device.parallelFor(size, evaluator.costPerCoeff(Vectorizable),
339
- EvalRange::alignBlockSize,
340
- [&evaluator](StorageIndex firstIdx, StorageIndex lastIdx) {
341
- EvalRange::run(&evaluator, firstIdx, lastIdx);
342
- });
343
- }
344
- evaluator.cleanup();
345
- }
346
- };
347
-
348
- template <typename Expression, bool Vectorizable>
349
- class TensorExecutor<Expression, ThreadPoolDevice, Vectorizable,
350
- /*Tiling=*/TiledEvaluation::On> {
351
- public:
352
- typedef typename traits<Expression>::Index IndexType;
353
- typedef typename traits<Expression>::Scalar Scalar;
354
- typedef typename remove_const<Scalar>::type ScalarNoConst;
355
-
356
- static const int NumDims = traits<Expression>::NumDimensions;
357
-
358
- typedef TensorEvaluator<Expression, ThreadPoolDevice> Evaluator;
359
- typedef TensorBlockMapper<NumDims, Evaluator::Layout, IndexType> BlockMapper;
360
- typedef TensorExecutorTilingContext<BlockMapper> TilingContext;
361
-
362
- typedef internal::TensorBlockDescriptor<NumDims, IndexType>
363
- TensorBlockDesc;
364
- typedef internal::TensorBlockScratchAllocator<ThreadPoolDevice>
365
- TensorBlockScratch;
366
-
367
- static EIGEN_STRONG_INLINE void run(const Expression& expr,
368
- const ThreadPoolDevice& device) {
369
- Evaluator evaluator(expr, device);
370
-
371
- const bool needs_assign = evaluator.evalSubExprsIfNeeded(nullptr);
372
- if (needs_assign) {
373
- const TilingContext tiling =
374
- internal::GetTensorExecutorTilingContext<Evaluator, BlockMapper,
375
- Vectorizable>(evaluator);
376
-
377
- auto eval_block = [&device, &evaluator, &tiling](IndexType firstBlockIdx,
378
- IndexType lastBlockIdx) {
379
- TensorBlockScratch scratch(device);
380
-
381
- for (IndexType block_idx = firstBlockIdx; block_idx < lastBlockIdx;
382
- ++block_idx) {
383
- TensorBlockDesc desc = tiling.block_mapper.blockDescriptor(block_idx);
384
- evaluator.evalBlock(desc, scratch);
385
- scratch.reset();
386
- }
387
- };
388
-
389
- // Evaluate small expressions directly as a single block.
390
- if (tiling.block_mapper.blockCount() == 1) {
391
- TensorBlockScratch scratch(device);
392
- TensorBlockDesc desc(0, tiling.block_mapper.blockDimensions());
393
- evaluator.evalBlock(desc, scratch);
394
- } else {
395
- device.parallelFor(tiling.block_mapper.blockCount(), tiling.cost,
396
- eval_block);
397
- }
398
- }
399
- evaluator.cleanup();
400
- }
401
- };
402
-
403
- template <typename Expression, typename DoneCallback, bool Vectorizable,
404
- TiledEvaluation Tiling>
405
- class TensorAsyncExecutor<Expression, ThreadPoolDevice, DoneCallback,
406
- Vectorizable, Tiling> {
407
- public:
408
- typedef typename Expression::Index StorageIndex;
409
- typedef TensorEvaluator<Expression, ThreadPoolDevice> Evaluator;
410
-
411
- static EIGEN_STRONG_INLINE void runAsync(const Expression& expr,
412
- const ThreadPoolDevice& device,
413
- DoneCallback done) {
414
- TensorAsyncExecutorContext* const ctx =
415
- new TensorAsyncExecutorContext(expr, device, std::move(done));
416
-
417
- const auto on_eval_subexprs = [ctx, &device](bool need_assign) -> void {
418
- if (!need_assign) {
419
- delete ctx;
420
- return;
421
- }
422
-
423
- typedef EvalRange<Evaluator, StorageIndex, Vectorizable> EvalRange;
424
- const StorageIndex size = array_prod(ctx->evaluator.dimensions());
425
- device.parallelForAsync(
426
- size, ctx->evaluator.costPerCoeff(Vectorizable),
427
- EvalRange::alignBlockSize,
428
- [ctx](StorageIndex firstIdx, StorageIndex lastIdx) {
429
- EvalRange::run(&ctx->evaluator, firstIdx, lastIdx);
430
- },
431
- [ctx]() { delete ctx; });
432
- };
433
-
434
- ctx->evaluator.evalSubExprsIfNeededAsync(nullptr, on_eval_subexprs);
435
- }
436
-
437
- private:
438
- struct TensorAsyncExecutorContext {
439
- TensorAsyncExecutorContext(const Expression& expr,
440
- const ThreadPoolDevice& thread_pool,
441
- DoneCallback done)
442
- : evaluator(expr, thread_pool), on_done(std::move(done)) {}
443
-
444
- ~TensorAsyncExecutorContext() {
445
- evaluator.cleanup();
446
- on_done();
447
- }
448
-
449
- Evaluator evaluator;
450
-
451
- private:
452
- DoneCallback on_done;
453
- };
454
- };
455
-
456
- template <typename Expression, typename DoneCallback, bool Vectorizable>
457
- class TensorAsyncExecutor<Expression, ThreadPoolDevice, DoneCallback,
458
- Vectorizable, /*Tileable*/ TiledEvaluation::On> {
459
- public:
460
- typedef typename traits<Expression>::Index IndexType;
461
- typedef typename traits<Expression>::Scalar Scalar;
462
- typedef typename remove_const<Scalar>::type ScalarNoConst;
463
-
464
- static const int NumDims = traits<Expression>::NumDimensions;
465
-
466
- typedef TensorEvaluator<Expression, ThreadPoolDevice> Evaluator;
467
- typedef TensorBlockMapper<NumDims, Evaluator::Layout, IndexType> BlockMapper;
468
- typedef TensorExecutorTilingContext<BlockMapper> TilingContext;
469
-
470
- typedef internal::TensorBlockDescriptor<NumDims, IndexType> TensorBlockDesc;
471
- typedef internal::TensorBlockScratchAllocator<ThreadPoolDevice>
472
- TensorBlockScratch;
473
-
474
- static EIGEN_STRONG_INLINE void runAsync(const Expression& expr,
475
- const ThreadPoolDevice& device,
476
- DoneCallback done) {
477
-
478
- TensorAsyncExecutorContext* const ctx =
479
- new TensorAsyncExecutorContext(expr, device, std::move(done));
480
-
481
- const auto on_eval_subexprs = [ctx](bool need_assign) -> void {
482
- if (!need_assign) {
483
- delete ctx;
484
- return;
485
- }
486
-
487
- ctx->tiling = internal::GetTensorExecutorTilingContext<
488
- Evaluator, BlockMapper, Vectorizable>(ctx->evaluator);
489
-
490
- auto eval_block = [ctx](IndexType firstBlockIdx, IndexType lastBlockIdx) {
491
- TensorBlockScratch scratch(ctx->device);
492
-
493
- for (IndexType block_idx = firstBlockIdx; block_idx < lastBlockIdx;
494
- ++block_idx) {
495
- TensorBlockDesc desc =
496
- ctx->tiling.block_mapper.blockDescriptor(block_idx);
497
- ctx->evaluator.evalBlock(desc, scratch);
498
- scratch.reset();
499
- }
500
- };
501
-
502
- // Evaluate small expressions directly as a single block.
503
- if (ctx->tiling.block_mapper.blockCount() == 1) {
504
- TensorBlockScratch scratch(ctx->device);
505
- TensorBlockDesc desc(0, ctx->tiling.block_mapper.blockDimensions());
506
- ctx->evaluator.evalBlock(desc, scratch);
507
- delete ctx;
508
- } else {
509
- ctx->device.parallelForAsync(ctx->tiling.block_mapper.blockCount(),
510
- ctx->tiling.cost, eval_block,
511
- [ctx]() { delete ctx; });
512
- }
513
- };
514
-
515
- ctx->evaluator.evalSubExprsIfNeededAsync(nullptr, on_eval_subexprs);
516
- }
517
-
518
- private:
519
- struct TensorAsyncExecutorContext {
520
- TensorAsyncExecutorContext(const Expression& expr,
521
- const ThreadPoolDevice& thread_pool,
522
- DoneCallback done)
523
- : device(thread_pool),
524
- evaluator(expr, thread_pool),
525
- on_done(std::move(done)) {}
526
-
527
- ~TensorAsyncExecutorContext() {
528
- evaluator.cleanup();
529
- on_done();
530
- }
531
-
532
- const ThreadPoolDevice& device;
533
- Evaluator evaluator;
534
- TilingContext tiling;
535
-
536
- private:
537
- DoneCallback on_done;
538
- };
539
- };
540
-
541
- #endif // EIGEN_USE_THREADS
542
-
543
- // GPU: the evaluation of the expression is offloaded to a GPU.
544
- #if defined(EIGEN_USE_GPU)
545
-
546
- template <typename Expression, bool Vectorizable, TiledEvaluation Tiling>
547
- class TensorExecutor<Expression, GpuDevice, Vectorizable, Tiling> {
548
- public:
549
- typedef typename Expression::Index StorageIndex;
550
- static void run(const Expression& expr, const GpuDevice& device);
551
- };
552
-
553
- #if defined(EIGEN_GPUCC)
554
- template <typename Evaluator, typename StorageIndex, bool Vectorizable>
555
- struct EigenMetaKernelEval {
556
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE
557
- void run(Evaluator& eval, StorageIndex firstIdx, StorageIndex lastIdx, StorageIndex step_size) {
558
- for (StorageIndex i = firstIdx; i < lastIdx; i += step_size) {
559
- eval.evalScalar(i);
560
- }
561
- }
562
- };
563
-
564
- template <typename Evaluator, typename StorageIndex>
565
- struct EigenMetaKernelEval<Evaluator, StorageIndex, true> {
566
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE
567
- void run(Evaluator& eval, StorageIndex firstIdx, StorageIndex lastIdx, StorageIndex step_size) {
568
- const StorageIndex PacketSize = unpacket_traits<typename Evaluator::PacketReturnType>::size;
569
- const StorageIndex vectorized_size = (lastIdx / PacketSize) * PacketSize;
570
- const StorageIndex vectorized_step_size = step_size * PacketSize;
571
-
572
- // Use the vector path
573
- for (StorageIndex i = firstIdx * PacketSize; i < vectorized_size;
574
- i += vectorized_step_size) {
575
- eval.evalPacket(i);
576
- }
577
- for (StorageIndex i = vectorized_size + firstIdx; i < lastIdx; i += step_size) {
578
- eval.evalScalar(i);
579
- }
580
- }
581
- };
582
-
583
- template <typename Evaluator, typename StorageIndex>
584
- __global__ void
585
- __launch_bounds__(1024)
586
- EigenMetaKernel(Evaluator eval, StorageIndex size) {
587
-
588
- const StorageIndex first_index = blockIdx.x * blockDim.x + threadIdx.x;
589
- const StorageIndex step_size = blockDim.x * gridDim.x;
590
-
591
- const bool vectorizable = Evaluator::PacketAccess & Evaluator::IsAligned;
592
- EigenMetaKernelEval<Evaluator, StorageIndex, vectorizable>::run(eval, first_index, size, step_size);
593
- }
594
-
595
- /*static*/
596
- template <typename Expression, bool Vectorizable, TiledEvaluation Tiling>
597
- EIGEN_STRONG_INLINE void TensorExecutor<Expression, GpuDevice, Vectorizable, Tiling>::run(
598
- const Expression& expr, const GpuDevice& device) {
599
- TensorEvaluator<Expression, GpuDevice> evaluator(expr, device);
600
- const bool needs_assign = evaluator.evalSubExprsIfNeeded(nullptr);
601
- if (needs_assign) {
602
-
603
- const int block_size = device.maxGpuThreadsPerBlock();
604
- const int max_blocks = device.getNumGpuMultiProcessors() *
605
- device.maxGpuThreadsPerMultiProcessor() / block_size;
606
- const StorageIndex size = array_prod(evaluator.dimensions());
607
- // Create a least one block to ensure we won't crash when tensorflow calls with tensors of size 0.
608
- const int num_blocks = numext::maxi<int>(numext::mini<int>(max_blocks, divup<int>(size, block_size)), 1);
609
-
610
- LAUNCH_GPU_KERNEL(
611
- (EigenMetaKernel<TensorEvaluator<Expression, GpuDevice>, StorageIndex>),
612
- num_blocks, block_size, 0, device, evaluator, size);
613
- }
614
- evaluator.cleanup();
615
- }
616
-
617
- #endif // EIGEN_GPUCC
618
- #endif // EIGEN_USE_GPU
619
-
620
- // SYCL Executor policy
621
- #ifdef EIGEN_USE_SYCL
622
-
623
- template <typename Evaluator>
624
- struct ExecExprFunctorKernel {
625
- typedef typename Evaluator::Index Index;
626
- Evaluator evaluator;
627
- const Index range;
628
- template <typename Scratch>
629
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE ExecExprFunctorKernel(
630
- const Scratch, Evaluator evaluator_, const Index range_)
631
- : evaluator(evaluator_), range(range_) {}
632
-
633
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void operator()(
634
- cl::sycl::nd_item<1> itemID) {
635
- compute(itemID);
636
- }
637
- template <bool is_vec = Evaluator::PacketAccess>
638
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE typename std::enable_if<!is_vec>::type
639
- compute(const cl::sycl::nd_item<1>& itemID) {
640
- Index gId = static_cast<Index>(itemID.get_global_linear_id());
641
- Index total_threads = itemID.get_global_range(0);
642
-
643
- for (Index i = gId; i < range; i += total_threads) {
644
- evaluator.evalScalar(i);
645
- }
646
- }
647
- template <bool is_vec = Evaluator::PacketAccess>
648
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE typename std::enable_if<is_vec>::type
649
- compute(const cl::sycl::nd_item<1>& itemID) {
650
- const Index vectorizedRange =
651
- (range / Evaluator::PacketSize) * Evaluator::PacketSize;
652
- Index gId = static_cast<Index>(itemID.get_global_linear_id());
653
- const Index step = Evaluator::PacketSize * itemID.get_global_range(0);
654
- const Index start = Evaluator::PacketSize * gId;
655
- for (Index i = start; i < vectorizedRange; i += step) {
656
- evaluator.evalPacket(i);
657
- }
658
- gId += vectorizedRange;
659
- for (Index i = gId; i < range; i += itemID.get_global_range(0)) {
660
- evaluator.evalScalar(i);
661
- }
662
- }
663
- };
664
-
665
- template <typename Expression, bool Vectorizable, TiledEvaluation Tiling>
666
- class TensorExecutor<Expression, Eigen::SyclDevice, Vectorizable, Tiling> {
667
- public:
668
- typedef typename Expression::Index Index;
669
- static EIGEN_STRONG_INLINE void run(const Expression& expr,
670
- const Eigen::SyclDevice& dev) {
671
- typedef Eigen::TensorEvaluator<Expression, Eigen::SyclDevice> Evaluator;
672
- Evaluator evaluator(expr, dev);
673
- const bool needs_assign = evaluator.evalSubExprsIfNeeded(NULL);
674
- if (needs_assign) {
675
- Index range, GRange, tileSize;
676
- Index total_size = ::Eigen::internal::array_prod(evaluator.dimensions());
677
- total_size = (total_size == 0) ? 1 : total_size;
678
- const int PacketSize =
679
- Eigen::PacketType<typename Evaluator::CoeffReturnType,
680
- Eigen::SyclDevice>::size;
681
- Index vectorizable_threads = static_cast<Index>(total_size / PacketSize);
682
- dev.parallel_for_setup(vectorizable_threads, tileSize, range, GRange);
683
- range = total_size;
684
-
685
- dev.template nullary_kernel_launcher<
686
- typename Evaluator::CoeffReturnType,
687
- ExecExprFunctorKernel<Evaluator> >(
688
- evaluator,
689
- cl::sycl::nd_range<1>(cl::sycl::range<1>(GRange),
690
- cl::sycl::range<1>(tileSize)),
691
- Index(1), range);
692
- }
693
- evaluator.cleanup();
694
- }
695
- };
696
-
697
- #endif
698
-
699
- } // end namespace internal
700
-
701
- } // end namespace Eigen
702
-
703
- #endif // EIGEN_CXX11_TENSOR_TENSOR_EXECUTOR_H