sequenzo 0.1.18__cp310-cp310-macosx_10_9_universal2.whl → 0.1.20__cp310-cp310-macosx_10_9_universal2.whl
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- sequenzo/__init__.py +39 -7
- sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
- sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
- sequenzo/clustering/KMedoids.py +39 -0
- sequenzo/clustering/hierarchical_clustering.py +108 -6
- sequenzo/define_sequence_data.py +10 -1
- sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
- sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
- sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
- sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
- sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
- sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
- sequenzo/multidomain/cat.py +0 -53
- sequenzo/multidomain/dat.py +11 -3
- sequenzo/multidomain/idcd.py +0 -3
- sequenzo/multidomain/linked_polyad.py +0 -1
- sequenzo/openmp_setup.py +233 -0
- sequenzo/visualization/plot_transition_matrix.py +21 -22
- {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
- sequenzo-0.1.20.dist-info/RECORD +215 -0
- sequenzo/dissimilarity_measures/setup.py +0 -35
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
- sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
- sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
- sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
- sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
- sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
- sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
- sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
- sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
- sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
- sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
- sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
- sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
- sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
- sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
- sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
- sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
- sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
- sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
- sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
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- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
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- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2009 Mark Borgerding mark a borgerding net
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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namespace Eigen {
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namespace internal {
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//
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// 1. we use FFTW_ESTIMATE for all our planning
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// see the FFTW docs section 4.3.2 "Planner Flags"
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// 2. fftw_complex is compatible with std::complex
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inline
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T * fftw_cast(const T* p)
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{
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}
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fftw_complex * fftw_cast( const std::complex<double> * p)
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{
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return const_cast<fftw_complex*>( reinterpret_cast<const fftw_complex*>(p) );
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}
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fftwf_complex * fftw_cast( const std::complex<float> * p)
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{
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return const_cast<fftwf_complex*>( reinterpret_cast<const fftwf_complex*>(p) );
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}
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fftwl_complex * fftw_cast( const std::complex<long double> * p)
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{
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return const_cast<fftwl_complex*>( reinterpret_cast<const fftwl_complex*>(p) );
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struct fftw_plan {};
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template <>
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struct fftw_plan<float>
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{
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typedef fftwf_complex complex_type;
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fftw_plan() :m_plan(NULL) {}
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~fftw_plan() {if (m_plan) fftwf_destroy_plan(m_plan);}
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void fwd(complex_type * dst,complex_type * src,int nfft) {
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void inv(complex_type * dst,complex_type * src,int nfft) {
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fftwf_execute_dft( m_plan, src,dst);
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void fwd(complex_type * dst,scalar_type * src,int nfft) {
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void inv(scalar_type * dst,complex_type * src,int nfft) {
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void fwd2( complex_type * dst,complex_type * src,int n0,int n1) {
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if (m_plan==NULL) m_plan = fftwf_plan_dft_2d(n0,n1,src,dst,FFTW_FORWARD,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
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fftwf_execute_dft( m_plan, src,dst);
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85
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}
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inline
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void inv2( complex_type * dst,complex_type * src,int n0,int n1) {
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if (m_plan==NULL) m_plan = fftwf_plan_dft_2d(n0,n1,src,dst,FFTW_BACKWARD,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
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89
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fftwf_execute_dft( m_plan, src,dst);
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}
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};
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template <>
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struct fftw_plan<double>
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{
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96
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typedef double scalar_type;
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97
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typedef fftw_complex complex_type;
|
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98
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::fftw_plan m_plan;
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fftw_plan() :m_plan(NULL) {}
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~fftw_plan() {if (m_plan) fftw_destroy_plan(m_plan);}
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inline
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103
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void fwd(complex_type * dst,complex_type * src,int nfft) {
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if (m_plan==NULL) m_plan = fftw_plan_dft_1d(nfft,src,dst, FFTW_FORWARD, FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
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fftw_execute_dft( m_plan, src,dst);
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}
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inline
|
|
108
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void inv(complex_type * dst,complex_type * src,int nfft) {
|
|
109
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if (m_plan==NULL) m_plan = fftw_plan_dft_1d(nfft,src,dst, FFTW_BACKWARD , FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
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110
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fftw_execute_dft( m_plan, src,dst);
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}
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inline
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113
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void fwd(complex_type * dst,scalar_type * src,int nfft) {
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if (m_plan==NULL) m_plan = fftw_plan_dft_r2c_1d(nfft,src,dst,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
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115
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fftw_execute_dft_r2c( m_plan,src,dst);
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116
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}
|
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117
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inline
|
|
118
|
-
void inv(scalar_type * dst,complex_type * src,int nfft) {
|
|
119
|
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if (m_plan==NULL)
|
|
120
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m_plan = fftw_plan_dft_c2r_1d(nfft,src,dst,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
|
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121
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fftw_execute_dft_c2r( m_plan, src,dst);
|
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122
|
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}
|
|
123
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inline
|
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124
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void fwd2( complex_type * dst,complex_type * src,int n0,int n1) {
|
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if (m_plan==NULL) m_plan = fftw_plan_dft_2d(n0,n1,src,dst,FFTW_FORWARD,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
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fftw_execute_dft( m_plan, src,dst);
|
|
127
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}
|
|
128
|
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inline
|
|
129
|
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void inv2( complex_type * dst,complex_type * src,int n0,int n1) {
|
|
130
|
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if (m_plan==NULL) m_plan = fftw_plan_dft_2d(n0,n1,src,dst,FFTW_BACKWARD,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
|
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131
|
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fftw_execute_dft( m_plan, src,dst);
|
|
132
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}
|
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133
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};
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134
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template <>
|
|
135
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struct fftw_plan<long double>
|
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{
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137
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typedef long double scalar_type;
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typedef fftwl_complex complex_type;
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|
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fftwl_plan m_plan;
|
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fftw_plan() :m_plan(NULL) {}
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~fftw_plan() {if (m_plan) fftwl_destroy_plan(m_plan);}
|
|
142
|
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|
|
143
|
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inline
|
|
144
|
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void fwd(complex_type * dst,complex_type * src,int nfft) {
|
|
145
|
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if (m_plan==NULL) m_plan = fftwl_plan_dft_1d(nfft,src,dst, FFTW_FORWARD, FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
|
|
146
|
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fftwl_execute_dft( m_plan, src,dst);
|
|
147
|
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}
|
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148
|
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inline
|
|
149
|
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void inv(complex_type * dst,complex_type * src,int nfft) {
|
|
150
|
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if (m_plan==NULL) m_plan = fftwl_plan_dft_1d(nfft,src,dst, FFTW_BACKWARD , FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
|
|
151
|
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fftwl_execute_dft( m_plan, src,dst);
|
|
152
|
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}
|
|
153
|
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inline
|
|
154
|
-
void fwd(complex_type * dst,scalar_type * src,int nfft) {
|
|
155
|
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if (m_plan==NULL) m_plan = fftwl_plan_dft_r2c_1d(nfft,src,dst,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
|
|
156
|
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fftwl_execute_dft_r2c( m_plan,src,dst);
|
|
157
|
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}
|
|
158
|
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inline
|
|
159
|
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void inv(scalar_type * dst,complex_type * src,int nfft) {
|
|
160
|
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if (m_plan==NULL)
|
|
161
|
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m_plan = fftwl_plan_dft_c2r_1d(nfft,src,dst,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
|
|
162
|
-
fftwl_execute_dft_c2r( m_plan, src,dst);
|
|
163
|
-
}
|
|
164
|
-
inline
|
|
165
|
-
void fwd2( complex_type * dst,complex_type * src,int n0,int n1) {
|
|
166
|
-
if (m_plan==NULL) m_plan = fftwl_plan_dft_2d(n0,n1,src,dst,FFTW_FORWARD,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
|
|
167
|
-
fftwl_execute_dft( m_plan, src,dst);
|
|
168
|
-
}
|
|
169
|
-
inline
|
|
170
|
-
void inv2( complex_type * dst,complex_type * src,int n0,int n1) {
|
|
171
|
-
if (m_plan==NULL) m_plan = fftwl_plan_dft_2d(n0,n1,src,dst,FFTW_BACKWARD,FFTW_ESTIMATE|FFTW_PRESERVE_INPUT);
|
|
172
|
-
fftwl_execute_dft( m_plan, src,dst);
|
|
173
|
-
}
|
|
174
|
-
};
|
|
175
|
-
|
|
176
|
-
template <typename _Scalar>
|
|
177
|
-
struct fftw_impl
|
|
178
|
-
{
|
|
179
|
-
typedef _Scalar Scalar;
|
|
180
|
-
typedef std::complex<Scalar> Complex;
|
|
181
|
-
|
|
182
|
-
inline
|
|
183
|
-
void clear()
|
|
184
|
-
{
|
|
185
|
-
m_plans.clear();
|
|
186
|
-
}
|
|
187
|
-
|
|
188
|
-
// complex-to-complex forward FFT
|
|
189
|
-
inline
|
|
190
|
-
void fwd( Complex * dst,const Complex *src,int nfft)
|
|
191
|
-
{
|
|
192
|
-
get_plan(nfft,false,dst,src).fwd(fftw_cast(dst), fftw_cast(src),nfft );
|
|
193
|
-
}
|
|
194
|
-
|
|
195
|
-
// real-to-complex forward FFT
|
|
196
|
-
inline
|
|
197
|
-
void fwd( Complex * dst,const Scalar * src,int nfft)
|
|
198
|
-
{
|
|
199
|
-
get_plan(nfft,false,dst,src).fwd(fftw_cast(dst), fftw_cast(src) ,nfft);
|
|
200
|
-
}
|
|
201
|
-
|
|
202
|
-
// 2-d complex-to-complex
|
|
203
|
-
inline
|
|
204
|
-
void fwd2(Complex * dst, const Complex * src, int n0,int n1)
|
|
205
|
-
{
|
|
206
|
-
get_plan(n0,n1,false,dst,src).fwd2(fftw_cast(dst), fftw_cast(src) ,n0,n1);
|
|
207
|
-
}
|
|
208
|
-
|
|
209
|
-
// inverse complex-to-complex
|
|
210
|
-
inline
|
|
211
|
-
void inv(Complex * dst,const Complex *src,int nfft)
|
|
212
|
-
{
|
|
213
|
-
get_plan(nfft,true,dst,src).inv(fftw_cast(dst), fftw_cast(src),nfft );
|
|
214
|
-
}
|
|
215
|
-
|
|
216
|
-
// half-complex to scalar
|
|
217
|
-
inline
|
|
218
|
-
void inv( Scalar * dst,const Complex * src,int nfft)
|
|
219
|
-
{
|
|
220
|
-
get_plan(nfft,true,dst,src).inv(fftw_cast(dst), fftw_cast(src),nfft );
|
|
221
|
-
}
|
|
222
|
-
|
|
223
|
-
// 2-d complex-to-complex
|
|
224
|
-
inline
|
|
225
|
-
void inv2(Complex * dst, const Complex * src, int n0,int n1)
|
|
226
|
-
{
|
|
227
|
-
get_plan(n0,n1,true,dst,src).inv2(fftw_cast(dst), fftw_cast(src) ,n0,n1);
|
|
228
|
-
}
|
|
229
|
-
|
|
230
|
-
|
|
231
|
-
protected:
|
|
232
|
-
typedef fftw_plan<Scalar> PlanData;
|
|
233
|
-
|
|
234
|
-
typedef Eigen::numext::int64_t int64_t;
|
|
235
|
-
|
|
236
|
-
typedef std::map<int64_t,PlanData> PlanMap;
|
|
237
|
-
|
|
238
|
-
PlanMap m_plans;
|
|
239
|
-
|
|
240
|
-
inline
|
|
241
|
-
PlanData & get_plan(int nfft,bool inverse,void * dst,const void * src)
|
|
242
|
-
{
|
|
243
|
-
bool inplace = (dst==src);
|
|
244
|
-
bool aligned = ( (reinterpret_cast<size_t>(src)&15) | (reinterpret_cast<size_t>(dst)&15) ) == 0;
|
|
245
|
-
int64_t key = ( (nfft<<3 ) | (inverse<<2) | (inplace<<1) | aligned ) << 1;
|
|
246
|
-
return m_plans[key];
|
|
247
|
-
}
|
|
248
|
-
|
|
249
|
-
inline
|
|
250
|
-
PlanData & get_plan(int n0,int n1,bool inverse,void * dst,const void * src)
|
|
251
|
-
{
|
|
252
|
-
bool inplace = (dst==src);
|
|
253
|
-
bool aligned = ( (reinterpret_cast<size_t>(src)&15) | (reinterpret_cast<size_t>(dst)&15) ) == 0;
|
|
254
|
-
int64_t key = ( ( (((int64_t)n0) << 30)|(n1<<3 ) | (inverse<<2) | (inplace<<1) | aligned ) << 1 ) + 1;
|
|
255
|
-
return m_plans[key];
|
|
256
|
-
}
|
|
257
|
-
};
|
|
258
|
-
|
|
259
|
-
} // end namespace internal
|
|
260
|
-
|
|
261
|
-
} // end namespace Eigen
|
|
@@ -1,449 +0,0 @@
|
|
|
1
|
-
// This file is part of Eigen, a lightweight C++ template library
|
|
2
|
-
// for linear algebra.
|
|
3
|
-
//
|
|
4
|
-
// Copyright (C) 2009 Mark Borgerding mark a borgerding net
|
|
5
|
-
//
|
|
6
|
-
// This Source Code Form is subject to the terms of the Mozilla
|
|
7
|
-
// Public License v. 2.0. If a copy of the MPL was not distributed
|
|
8
|
-
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
|
|
9
|
-
|
|
10
|
-
namespace Eigen {
|
|
11
|
-
|
|
12
|
-
namespace internal {
|
|
13
|
-
|
|
14
|
-
// This FFT implementation was derived from kissfft http:sourceforge.net/projects/kissfft
|
|
15
|
-
// Copyright 2003-2009 Mark Borgerding
|
|
16
|
-
|
|
17
|
-
template <typename _Scalar>
|
|
18
|
-
struct kiss_cpx_fft
|
|
19
|
-
{
|
|
20
|
-
typedef _Scalar Scalar;
|
|
21
|
-
typedef std::complex<Scalar> Complex;
|
|
22
|
-
std::vector<Complex> m_twiddles;
|
|
23
|
-
std::vector<int> m_stageRadix;
|
|
24
|
-
std::vector<int> m_stageRemainder;
|
|
25
|
-
std::vector<Complex> m_scratchBuf;
|
|
26
|
-
bool m_inverse;
|
|
27
|
-
|
|
28
|
-
inline void make_twiddles(int nfft, bool inverse)
|
|
29
|
-
{
|
|
30
|
-
using numext::sin;
|
|
31
|
-
using numext::cos;
|
|
32
|
-
m_inverse = inverse;
|
|
33
|
-
m_twiddles.resize(nfft);
|
|
34
|
-
double phinc = 0.25 * double(EIGEN_PI) / nfft;
|
|
35
|
-
Scalar flip = inverse ? Scalar(1) : Scalar(-1);
|
|
36
|
-
m_twiddles[0] = Complex(Scalar(1), Scalar(0));
|
|
37
|
-
if ((nfft&1)==0)
|
|
38
|
-
m_twiddles[nfft/2] = Complex(Scalar(-1), Scalar(0));
|
|
39
|
-
int i=1;
|
|
40
|
-
for (;i*8<nfft;++i)
|
|
41
|
-
{
|
|
42
|
-
Scalar c = Scalar(cos(i*8*phinc));
|
|
43
|
-
Scalar s = Scalar(sin(i*8*phinc));
|
|
44
|
-
m_twiddles[i] = Complex(c, s*flip);
|
|
45
|
-
m_twiddles[nfft-i] = Complex(c, -s*flip);
|
|
46
|
-
}
|
|
47
|
-
for (;i*4<nfft;++i)
|
|
48
|
-
{
|
|
49
|
-
Scalar c = Scalar(cos((2*nfft-8*i)*phinc));
|
|
50
|
-
Scalar s = Scalar(sin((2*nfft-8*i)*phinc));
|
|
51
|
-
m_twiddles[i] = Complex(s, c*flip);
|
|
52
|
-
m_twiddles[nfft-i] = Complex(s, -c*flip);
|
|
53
|
-
}
|
|
54
|
-
for (;i*8<3*nfft;++i)
|
|
55
|
-
{
|
|
56
|
-
Scalar c = Scalar(cos((8*i-2*nfft)*phinc));
|
|
57
|
-
Scalar s = Scalar(sin((8*i-2*nfft)*phinc));
|
|
58
|
-
m_twiddles[i] = Complex(-s, c*flip);
|
|
59
|
-
m_twiddles[nfft-i] = Complex(-s, -c*flip);
|
|
60
|
-
}
|
|
61
|
-
for (;i*2<nfft;++i)
|
|
62
|
-
{
|
|
63
|
-
Scalar c = Scalar(cos((4*nfft-8*i)*phinc));
|
|
64
|
-
Scalar s = Scalar(sin((4*nfft-8*i)*phinc));
|
|
65
|
-
m_twiddles[i] = Complex(-c, s*flip);
|
|
66
|
-
m_twiddles[nfft-i] = Complex(-c, -s*flip);
|
|
67
|
-
}
|
|
68
|
-
}
|
|
69
|
-
|
|
70
|
-
void factorize(int nfft)
|
|
71
|
-
{
|
|
72
|
-
//start factoring out 4's, then 2's, then 3,5,7,9,...
|
|
73
|
-
int n= nfft;
|
|
74
|
-
int p=4;
|
|
75
|
-
do {
|
|
76
|
-
while (n % p) {
|
|
77
|
-
switch (p) {
|
|
78
|
-
case 4: p = 2; break;
|
|
79
|
-
case 2: p = 3; break;
|
|
80
|
-
default: p += 2; break;
|
|
81
|
-
}
|
|
82
|
-
if (p*p>n)
|
|
83
|
-
p=n;// impossible to have a factor > sqrt(n)
|
|
84
|
-
}
|
|
85
|
-
n /= p;
|
|
86
|
-
m_stageRadix.push_back(p);
|
|
87
|
-
m_stageRemainder.push_back(n);
|
|
88
|
-
if ( p > 5 )
|
|
89
|
-
m_scratchBuf.resize(p); // scratchbuf will be needed in bfly_generic
|
|
90
|
-
}while(n>1);
|
|
91
|
-
}
|
|
92
|
-
|
|
93
|
-
template <typename _Src>
|
|
94
|
-
inline
|
|
95
|
-
void work( int stage,Complex * xout, const _Src * xin, size_t fstride,size_t in_stride)
|
|
96
|
-
{
|
|
97
|
-
int p = m_stageRadix[stage];
|
|
98
|
-
int m = m_stageRemainder[stage];
|
|
99
|
-
Complex * Fout_beg = xout;
|
|
100
|
-
Complex * Fout_end = xout + p*m;
|
|
101
|
-
|
|
102
|
-
if (m>1) {
|
|
103
|
-
do{
|
|
104
|
-
// recursive call:
|
|
105
|
-
// DFT of size m*p performed by doing
|
|
106
|
-
// p instances of smaller DFTs of size m,
|
|
107
|
-
// each one takes a decimated version of the input
|
|
108
|
-
work(stage+1, xout , xin, fstride*p,in_stride);
|
|
109
|
-
xin += fstride*in_stride;
|
|
110
|
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}while( (xout += m) != Fout_end );
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111
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-
}else{
|
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112
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-
do{
|
|
113
|
-
*xout = *xin;
|
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114
|
-
xin += fstride*in_stride;
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|
115
|
-
}while(++xout != Fout_end );
|
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116
|
-
}
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117
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-
xout=Fout_beg;
|
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118
|
-
|
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119
|
-
// recombine the p smaller DFTs
|
|
120
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-
switch (p) {
|
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121
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-
case 2: bfly2(xout,fstride,m); break;
|
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122
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-
case 3: bfly3(xout,fstride,m); break;
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123
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-
case 4: bfly4(xout,fstride,m); break;
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124
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-
case 5: bfly5(xout,fstride,m); break;
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125
|
-
default: bfly_generic(xout,fstride,m,p); break;
|
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126
|
-
}
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127
|
-
}
|
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128
|
-
|
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129
|
-
inline
|
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130
|
-
void bfly2( Complex * Fout, const size_t fstride, int m)
|
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131
|
-
{
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132
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-
for (int k=0;k<m;++k) {
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133
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-
Complex t = Fout[m+k] * m_twiddles[k*fstride];
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134
|
-
Fout[m+k] = Fout[k] - t;
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135
|
-
Fout[k] += t;
|
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136
|
-
}
|
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137
|
-
}
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138
|
-
|
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139
|
-
inline
|
|
140
|
-
void bfly4( Complex * Fout, const size_t fstride, const size_t m)
|
|
141
|
-
{
|
|
142
|
-
Complex scratch[6];
|
|
143
|
-
int negative_if_inverse = m_inverse * -2 +1;
|
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144
|
-
for (size_t k=0;k<m;++k) {
|
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145
|
-
scratch[0] = Fout[k+m] * m_twiddles[k*fstride];
|
|
146
|
-
scratch[1] = Fout[k+2*m] * m_twiddles[k*fstride*2];
|
|
147
|
-
scratch[2] = Fout[k+3*m] * m_twiddles[k*fstride*3];
|
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148
|
-
scratch[5] = Fout[k] - scratch[1];
|
|
149
|
-
|
|
150
|
-
Fout[k] += scratch[1];
|
|
151
|
-
scratch[3] = scratch[0] + scratch[2];
|
|
152
|
-
scratch[4] = scratch[0] - scratch[2];
|
|
153
|
-
scratch[4] = Complex( scratch[4].imag()*negative_if_inverse , -scratch[4].real()* negative_if_inverse );
|
|
154
|
-
|
|
155
|
-
Fout[k+2*m] = Fout[k] - scratch[3];
|
|
156
|
-
Fout[k] += scratch[3];
|
|
157
|
-
Fout[k+m] = scratch[5] + scratch[4];
|
|
158
|
-
Fout[k+3*m] = scratch[5] - scratch[4];
|
|
159
|
-
}
|
|
160
|
-
}
|
|
161
|
-
|
|
162
|
-
inline
|
|
163
|
-
void bfly3( Complex * Fout, const size_t fstride, const size_t m)
|
|
164
|
-
{
|
|
165
|
-
size_t k=m;
|
|
166
|
-
const size_t m2 = 2*m;
|
|
167
|
-
Complex *tw1,*tw2;
|
|
168
|
-
Complex scratch[5];
|
|
169
|
-
Complex epi3;
|
|
170
|
-
epi3 = m_twiddles[fstride*m];
|
|
171
|
-
|
|
172
|
-
tw1=tw2=&m_twiddles[0];
|
|
173
|
-
|
|
174
|
-
do{
|
|
175
|
-
scratch[1]=Fout[m] * *tw1;
|
|
176
|
-
scratch[2]=Fout[m2] * *tw2;
|
|
177
|
-
|
|
178
|
-
scratch[3]=scratch[1]+scratch[2];
|
|
179
|
-
scratch[0]=scratch[1]-scratch[2];
|
|
180
|
-
tw1 += fstride;
|
|
181
|
-
tw2 += fstride*2;
|
|
182
|
-
Fout[m] = Complex( Fout->real() - Scalar(.5)*scratch[3].real() , Fout->imag() - Scalar(.5)*scratch[3].imag() );
|
|
183
|
-
scratch[0] *= epi3.imag();
|
|
184
|
-
*Fout += scratch[3];
|
|
185
|
-
Fout[m2] = Complex( Fout[m].real() + scratch[0].imag() , Fout[m].imag() - scratch[0].real() );
|
|
186
|
-
Fout[m] += Complex( -scratch[0].imag(),scratch[0].real() );
|
|
187
|
-
++Fout;
|
|
188
|
-
}while(--k);
|
|
189
|
-
}
|
|
190
|
-
|
|
191
|
-
inline
|
|
192
|
-
void bfly5( Complex * Fout, const size_t fstride, const size_t m)
|
|
193
|
-
{
|
|
194
|
-
Complex *Fout0,*Fout1,*Fout2,*Fout3,*Fout4;
|
|
195
|
-
size_t u;
|
|
196
|
-
Complex scratch[13];
|
|
197
|
-
Complex * twiddles = &m_twiddles[0];
|
|
198
|
-
Complex *tw;
|
|
199
|
-
Complex ya,yb;
|
|
200
|
-
ya = twiddles[fstride*m];
|
|
201
|
-
yb = twiddles[fstride*2*m];
|
|
202
|
-
|
|
203
|
-
Fout0=Fout;
|
|
204
|
-
Fout1=Fout0+m;
|
|
205
|
-
Fout2=Fout0+2*m;
|
|
206
|
-
Fout3=Fout0+3*m;
|
|
207
|
-
Fout4=Fout0+4*m;
|
|
208
|
-
|
|
209
|
-
tw=twiddles;
|
|
210
|
-
for ( u=0; u<m; ++u ) {
|
|
211
|
-
scratch[0] = *Fout0;
|
|
212
|
-
|
|
213
|
-
scratch[1] = *Fout1 * tw[u*fstride];
|
|
214
|
-
scratch[2] = *Fout2 * tw[2*u*fstride];
|
|
215
|
-
scratch[3] = *Fout3 * tw[3*u*fstride];
|
|
216
|
-
scratch[4] = *Fout4 * tw[4*u*fstride];
|
|
217
|
-
|
|
218
|
-
scratch[7] = scratch[1] + scratch[4];
|
|
219
|
-
scratch[10] = scratch[1] - scratch[4];
|
|
220
|
-
scratch[8] = scratch[2] + scratch[3];
|
|
221
|
-
scratch[9] = scratch[2] - scratch[3];
|
|
222
|
-
|
|
223
|
-
*Fout0 += scratch[7];
|
|
224
|
-
*Fout0 += scratch[8];
|
|
225
|
-
|
|
226
|
-
scratch[5] = scratch[0] + Complex(
|
|
227
|
-
(scratch[7].real()*ya.real() ) + (scratch[8].real() *yb.real() ),
|
|
228
|
-
(scratch[7].imag()*ya.real()) + (scratch[8].imag()*yb.real())
|
|
229
|
-
);
|
|
230
|
-
|
|
231
|
-
scratch[6] = Complex(
|
|
232
|
-
(scratch[10].imag()*ya.imag()) + (scratch[9].imag()*yb.imag()),
|
|
233
|
-
-(scratch[10].real()*ya.imag()) - (scratch[9].real()*yb.imag())
|
|
234
|
-
);
|
|
235
|
-
|
|
236
|
-
*Fout1 = scratch[5] - scratch[6];
|
|
237
|
-
*Fout4 = scratch[5] + scratch[6];
|
|
238
|
-
|
|
239
|
-
scratch[11] = scratch[0] +
|
|
240
|
-
Complex(
|
|
241
|
-
(scratch[7].real()*yb.real()) + (scratch[8].real()*ya.real()),
|
|
242
|
-
(scratch[7].imag()*yb.real()) + (scratch[8].imag()*ya.real())
|
|
243
|
-
);
|
|
244
|
-
|
|
245
|
-
scratch[12] = Complex(
|
|
246
|
-
-(scratch[10].imag()*yb.imag()) + (scratch[9].imag()*ya.imag()),
|
|
247
|
-
(scratch[10].real()*yb.imag()) - (scratch[9].real()*ya.imag())
|
|
248
|
-
);
|
|
249
|
-
|
|
250
|
-
*Fout2=scratch[11]+scratch[12];
|
|
251
|
-
*Fout3=scratch[11]-scratch[12];
|
|
252
|
-
|
|
253
|
-
++Fout0;++Fout1;++Fout2;++Fout3;++Fout4;
|
|
254
|
-
}
|
|
255
|
-
}
|
|
256
|
-
|
|
257
|
-
/* perform the butterfly for one stage of a mixed radix FFT */
|
|
258
|
-
inline
|
|
259
|
-
void bfly_generic(
|
|
260
|
-
Complex * Fout,
|
|
261
|
-
const size_t fstride,
|
|
262
|
-
int m,
|
|
263
|
-
int p
|
|
264
|
-
)
|
|
265
|
-
{
|
|
266
|
-
int u,k,q1,q;
|
|
267
|
-
Complex * twiddles = &m_twiddles[0];
|
|
268
|
-
Complex t;
|
|
269
|
-
int Norig = static_cast<int>(m_twiddles.size());
|
|
270
|
-
Complex * scratchbuf = &m_scratchBuf[0];
|
|
271
|
-
|
|
272
|
-
for ( u=0; u<m; ++u ) {
|
|
273
|
-
k=u;
|
|
274
|
-
for ( q1=0 ; q1<p ; ++q1 ) {
|
|
275
|
-
scratchbuf[q1] = Fout[ k ];
|
|
276
|
-
k += m;
|
|
277
|
-
}
|
|
278
|
-
|
|
279
|
-
k=u;
|
|
280
|
-
for ( q1=0 ; q1<p ; ++q1 ) {
|
|
281
|
-
int twidx=0;
|
|
282
|
-
Fout[ k ] = scratchbuf[0];
|
|
283
|
-
for (q=1;q<p;++q ) {
|
|
284
|
-
twidx += static_cast<int>(fstride) * k;
|
|
285
|
-
if (twidx>=Norig) twidx-=Norig;
|
|
286
|
-
t=scratchbuf[q] * twiddles[twidx];
|
|
287
|
-
Fout[ k ] += t;
|
|
288
|
-
}
|
|
289
|
-
k += m;
|
|
290
|
-
}
|
|
291
|
-
}
|
|
292
|
-
}
|
|
293
|
-
};
|
|
294
|
-
|
|
295
|
-
template <typename _Scalar>
|
|
296
|
-
struct kissfft_impl
|
|
297
|
-
{
|
|
298
|
-
typedef _Scalar Scalar;
|
|
299
|
-
typedef std::complex<Scalar> Complex;
|
|
300
|
-
|
|
301
|
-
void clear()
|
|
302
|
-
{
|
|
303
|
-
m_plans.clear();
|
|
304
|
-
m_realTwiddles.clear();
|
|
305
|
-
}
|
|
306
|
-
|
|
307
|
-
inline
|
|
308
|
-
void fwd( Complex * dst,const Complex *src,int nfft)
|
|
309
|
-
{
|
|
310
|
-
get_plan(nfft,false).work(0, dst, src, 1,1);
|
|
311
|
-
}
|
|
312
|
-
|
|
313
|
-
inline
|
|
314
|
-
void fwd2( Complex * dst,const Complex *src,int n0,int n1)
|
|
315
|
-
{
|
|
316
|
-
EIGEN_UNUSED_VARIABLE(dst);
|
|
317
|
-
EIGEN_UNUSED_VARIABLE(src);
|
|
318
|
-
EIGEN_UNUSED_VARIABLE(n0);
|
|
319
|
-
EIGEN_UNUSED_VARIABLE(n1);
|
|
320
|
-
}
|
|
321
|
-
|
|
322
|
-
inline
|
|
323
|
-
void inv2( Complex * dst,const Complex *src,int n0,int n1)
|
|
324
|
-
{
|
|
325
|
-
EIGEN_UNUSED_VARIABLE(dst);
|
|
326
|
-
EIGEN_UNUSED_VARIABLE(src);
|
|
327
|
-
EIGEN_UNUSED_VARIABLE(n0);
|
|
328
|
-
EIGEN_UNUSED_VARIABLE(n1);
|
|
329
|
-
}
|
|
330
|
-
|
|
331
|
-
// real-to-complex forward FFT
|
|
332
|
-
// perform two FFTs of src even and src odd
|
|
333
|
-
// then twiddle to recombine them into the half-spectrum format
|
|
334
|
-
// then fill in the conjugate symmetric half
|
|
335
|
-
inline
|
|
336
|
-
void fwd( Complex * dst,const Scalar * src,int nfft)
|
|
337
|
-
{
|
|
338
|
-
if ( nfft&3 ) {
|
|
339
|
-
// use generic mode for odd
|
|
340
|
-
m_tmpBuf1.resize(nfft);
|
|
341
|
-
get_plan(nfft,false).work(0, &m_tmpBuf1[0], src, 1,1);
|
|
342
|
-
std::copy(m_tmpBuf1.begin(),m_tmpBuf1.begin()+(nfft>>1)+1,dst );
|
|
343
|
-
}else{
|
|
344
|
-
int ncfft = nfft>>1;
|
|
345
|
-
int ncfft2 = nfft>>2;
|
|
346
|
-
Complex * rtw = real_twiddles(ncfft2);
|
|
347
|
-
|
|
348
|
-
// use optimized mode for even real
|
|
349
|
-
fwd( dst, reinterpret_cast<const Complex*> (src), ncfft);
|
|
350
|
-
Complex dc(dst[0].real() + dst[0].imag());
|
|
351
|
-
Complex nyquist(dst[0].real() - dst[0].imag());
|
|
352
|
-
int k;
|
|
353
|
-
for ( k=1;k <= ncfft2 ; ++k ) {
|
|
354
|
-
Complex fpk = dst[k];
|
|
355
|
-
Complex fpnk = conj(dst[ncfft-k]);
|
|
356
|
-
Complex f1k = fpk + fpnk;
|
|
357
|
-
Complex f2k = fpk - fpnk;
|
|
358
|
-
Complex tw= f2k * rtw[k-1];
|
|
359
|
-
dst[k] = (f1k + tw) * Scalar(.5);
|
|
360
|
-
dst[ncfft-k] = conj(f1k -tw)*Scalar(.5);
|
|
361
|
-
}
|
|
362
|
-
dst[0] = dc;
|
|
363
|
-
dst[ncfft] = nyquist;
|
|
364
|
-
}
|
|
365
|
-
}
|
|
366
|
-
|
|
367
|
-
// inverse complex-to-complex
|
|
368
|
-
inline
|
|
369
|
-
void inv(Complex * dst,const Complex *src,int nfft)
|
|
370
|
-
{
|
|
371
|
-
get_plan(nfft,true).work(0, dst, src, 1,1);
|
|
372
|
-
}
|
|
373
|
-
|
|
374
|
-
// half-complex to scalar
|
|
375
|
-
inline
|
|
376
|
-
void inv( Scalar * dst,const Complex * src,int nfft)
|
|
377
|
-
{
|
|
378
|
-
if (nfft&3) {
|
|
379
|
-
m_tmpBuf1.resize(nfft);
|
|
380
|
-
m_tmpBuf2.resize(nfft);
|
|
381
|
-
std::copy(src,src+(nfft>>1)+1,m_tmpBuf1.begin() );
|
|
382
|
-
for (int k=1;k<(nfft>>1)+1;++k)
|
|
383
|
-
m_tmpBuf1[nfft-k] = conj(m_tmpBuf1[k]);
|
|
384
|
-
inv(&m_tmpBuf2[0],&m_tmpBuf1[0],nfft);
|
|
385
|
-
for (int k=0;k<nfft;++k)
|
|
386
|
-
dst[k] = m_tmpBuf2[k].real();
|
|
387
|
-
}else{
|
|
388
|
-
// optimized version for multiple of 4
|
|
389
|
-
int ncfft = nfft>>1;
|
|
390
|
-
int ncfft2 = nfft>>2;
|
|
391
|
-
Complex * rtw = real_twiddles(ncfft2);
|
|
392
|
-
m_tmpBuf1.resize(ncfft);
|
|
393
|
-
m_tmpBuf1[0] = Complex( src[0].real() + src[ncfft].real(), src[0].real() - src[ncfft].real() );
|
|
394
|
-
for (int k = 1; k <= ncfft / 2; ++k) {
|
|
395
|
-
Complex fk = src[k];
|
|
396
|
-
Complex fnkc = conj(src[ncfft-k]);
|
|
397
|
-
Complex fek = fk + fnkc;
|
|
398
|
-
Complex tmp = fk - fnkc;
|
|
399
|
-
Complex fok = tmp * conj(rtw[k-1]);
|
|
400
|
-
m_tmpBuf1[k] = fek + fok;
|
|
401
|
-
m_tmpBuf1[ncfft-k] = conj(fek - fok);
|
|
402
|
-
}
|
|
403
|
-
get_plan(ncfft,true).work(0, reinterpret_cast<Complex*>(dst), &m_tmpBuf1[0], 1,1);
|
|
404
|
-
}
|
|
405
|
-
}
|
|
406
|
-
|
|
407
|
-
protected:
|
|
408
|
-
typedef kiss_cpx_fft<Scalar> PlanData;
|
|
409
|
-
typedef std::map<int,PlanData> PlanMap;
|
|
410
|
-
|
|
411
|
-
PlanMap m_plans;
|
|
412
|
-
std::map<int, std::vector<Complex> > m_realTwiddles;
|
|
413
|
-
std::vector<Complex> m_tmpBuf1;
|
|
414
|
-
std::vector<Complex> m_tmpBuf2;
|
|
415
|
-
|
|
416
|
-
inline
|
|
417
|
-
int PlanKey(int nfft, bool isinverse) const { return (nfft<<1) | int(isinverse); }
|
|
418
|
-
|
|
419
|
-
inline
|
|
420
|
-
PlanData & get_plan(int nfft, bool inverse)
|
|
421
|
-
{
|
|
422
|
-
// TODO look for PlanKey(nfft, ! inverse) and conjugate the twiddles
|
|
423
|
-
PlanData & pd = m_plans[ PlanKey(nfft,inverse) ];
|
|
424
|
-
if ( pd.m_twiddles.size() == 0 ) {
|
|
425
|
-
pd.make_twiddles(nfft,inverse);
|
|
426
|
-
pd.factorize(nfft);
|
|
427
|
-
}
|
|
428
|
-
return pd;
|
|
429
|
-
}
|
|
430
|
-
|
|
431
|
-
inline
|
|
432
|
-
Complex * real_twiddles(int ncfft2)
|
|
433
|
-
{
|
|
434
|
-
using std::acos;
|
|
435
|
-
std::vector<Complex> & twidref = m_realTwiddles[ncfft2];// creates new if not there
|
|
436
|
-
if ( (int)twidref.size() != ncfft2 ) {
|
|
437
|
-
twidref.resize(ncfft2);
|
|
438
|
-
int ncfft= ncfft2<<1;
|
|
439
|
-
Scalar pi = acos( Scalar(-1) );
|
|
440
|
-
for (int k=1;k<=ncfft2;++k)
|
|
441
|
-
twidref[k-1] = exp( Complex(0,-pi * (Scalar(k) / ncfft + Scalar(.5)) ) );
|
|
442
|
-
}
|
|
443
|
-
return &twidref[0];
|
|
444
|
-
}
|
|
445
|
-
};
|
|
446
|
-
|
|
447
|
-
} // end namespace internal
|
|
448
|
-
|
|
449
|
-
} // end namespace Eigen
|