scitex 2.14.0__py3-none-any.whl → 2.15.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +71 -17
- scitex/_env_loader.py +156 -0
- scitex/_mcp_resources/__init__.py +37 -0
- scitex/_mcp_resources/_cheatsheet.py +135 -0
- scitex/_mcp_resources/_figrecipe.py +138 -0
- scitex/_mcp_resources/_formats.py +102 -0
- scitex/_mcp_resources/_modules.py +337 -0
- scitex/_mcp_resources/_session.py +149 -0
- scitex/_mcp_tools/__init__.py +4 -0
- scitex/_mcp_tools/audio.py +66 -0
- scitex/_mcp_tools/diagram.py +11 -95
- scitex/_mcp_tools/introspect.py +210 -0
- scitex/_mcp_tools/plt.py +260 -305
- scitex/_mcp_tools/scholar.py +74 -0
- scitex/_mcp_tools/social.py +244 -0
- scitex/_mcp_tools/template.py +24 -0
- scitex/_mcp_tools/writer.py +21 -204
- scitex/ai/_gen_ai/_PARAMS.py +10 -7
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +45 -1603
- scitex/ai/classification/reporters/_mixins/__init__.py +36 -0
- scitex/ai/classification/reporters/_mixins/_constants.py +67 -0
- scitex/ai/classification/reporters/_mixins/_cv_summary.py +387 -0
- scitex/ai/classification/reporters/_mixins/_feature_importance.py +119 -0
- scitex/ai/classification/reporters/_mixins/_metrics.py +275 -0
- scitex/ai/classification/reporters/_mixins/_plotting.py +179 -0
- scitex/ai/classification/reporters/_mixins/_reports.py +153 -0
- scitex/ai/classification/reporters/_mixins/_storage.py +160 -0
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +30 -1550
- scitex/ai/classification/timeseries/_sliding_window_core.py +467 -0
- scitex/ai/classification/timeseries/_sliding_window_plotting.py +369 -0
- scitex/audio/README.md +40 -36
- scitex/audio/__init__.py +129 -61
- scitex/audio/_branding.py +185 -0
- scitex/audio/_mcp/__init__.py +32 -0
- scitex/audio/_mcp/handlers.py +59 -6
- scitex/audio/_mcp/speak_handlers.py +238 -0
- scitex/audio/_relay.py +225 -0
- scitex/audio/_tts.py +18 -10
- scitex/audio/engines/base.py +17 -10
- scitex/audio/engines/elevenlabs_engine.py +7 -2
- scitex/audio/mcp_server.py +228 -75
- scitex/canvas/README.md +1 -1
- scitex/canvas/editor/_dearpygui/__init__.py +25 -0
- scitex/canvas/editor/_dearpygui/_editor.py +147 -0
- scitex/canvas/editor/_dearpygui/_handlers.py +476 -0
- scitex/canvas/editor/_dearpygui/_panels/__init__.py +17 -0
- scitex/canvas/editor/_dearpygui/_panels/_control.py +119 -0
- scitex/canvas/editor/_dearpygui/_panels/_element_controls.py +190 -0
- scitex/canvas/editor/_dearpygui/_panels/_preview.py +43 -0
- scitex/canvas/editor/_dearpygui/_panels/_sections.py +390 -0
- scitex/canvas/editor/_dearpygui/_plotting.py +187 -0
- scitex/canvas/editor/_dearpygui/_rendering.py +504 -0
- scitex/canvas/editor/_dearpygui/_selection.py +295 -0
- scitex/canvas/editor/_dearpygui/_state.py +93 -0
- scitex/canvas/editor/_dearpygui/_utils.py +61 -0
- scitex/canvas/editor/flask_editor/_core/__init__.py +27 -0
- scitex/canvas/editor/flask_editor/_core/_bbox_extraction.py +200 -0
- scitex/canvas/editor/flask_editor/_core/_editor.py +173 -0
- scitex/canvas/editor/flask_editor/_core/_export_helpers.py +353 -0
- scitex/canvas/editor/flask_editor/_core/_routes_basic.py +190 -0
- scitex/canvas/editor/flask_editor/_core/_routes_export.py +332 -0
- scitex/canvas/editor/flask_editor/_core/_routes_panels.py +252 -0
- scitex/canvas/editor/flask_editor/_core/_routes_save.py +218 -0
- scitex/canvas/editor/flask_editor/_core.py +25 -1684
- scitex/canvas/editor/flask_editor/templates/__init__.py +32 -70
- scitex/cli/__init__.py +38 -43
- scitex/cli/audio.py +76 -27
- scitex/cli/capture.py +13 -20
- scitex/cli/introspect.py +481 -0
- scitex/cli/main.py +200 -109
- scitex/cli/mcp.py +60 -34
- scitex/cli/plt.py +357 -0
- scitex/cli/repro.py +15 -8
- scitex/cli/resource.py +15 -8
- scitex/cli/scholar/__init__.py +23 -8
- scitex/cli/scholar/_crossref_scitex.py +296 -0
- scitex/cli/scholar/_fetch.py +25 -3
- scitex/cli/social.py +314 -0
- scitex/cli/stats.py +15 -8
- scitex/cli/template.py +129 -12
- scitex/cli/tex.py +15 -8
- scitex/cli/writer.py +132 -8
- scitex/cloud/__init__.py +41 -2
- scitex/config/README.md +1 -1
- scitex/config/__init__.py +16 -2
- scitex/config/_env_registry.py +256 -0
- scitex/context/__init__.py +22 -0
- scitex/dev/__init__.py +20 -1
- scitex/diagram/__init__.py +42 -19
- scitex/diagram/mcp_server.py +13 -125
- scitex/gen/__init__.py +50 -14
- scitex/gen/_list_packages.py +4 -4
- scitex/introspect/__init__.py +82 -0
- scitex/introspect/_call_graph.py +303 -0
- scitex/introspect/_class_hierarchy.py +163 -0
- scitex/introspect/_core.py +41 -0
- scitex/introspect/_docstring.py +131 -0
- scitex/introspect/_examples.py +113 -0
- scitex/introspect/_imports.py +271 -0
- scitex/{gen/_inspect_module.py → introspect/_list_api.py} +43 -54
- scitex/introspect/_mcp/__init__.py +41 -0
- scitex/introspect/_mcp/handlers.py +233 -0
- scitex/introspect/_members.py +155 -0
- scitex/introspect/_resolve.py +89 -0
- scitex/introspect/_signature.py +131 -0
- scitex/introspect/_source.py +80 -0
- scitex/introspect/_type_hints.py +172 -0
- scitex/io/_save.py +1 -2
- scitex/io/bundle/README.md +1 -1
- scitex/logging/_formatters.py +19 -9
- scitex/mcp_server.py +98 -5
- scitex/os/__init__.py +4 -0
- scitex/{gen → os}/_check_host.py +4 -5
- scitex/plt/__init__.py +245 -550
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/_wrappers.py +5 -10
- scitex/plt/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
- scitex/plt/gallery/README.md +1 -1
- scitex/plt/utils/_hitmap/__init__.py +82 -0
- scitex/plt/utils/_hitmap/_artist_extraction.py +343 -0
- scitex/plt/utils/_hitmap/_color_application.py +346 -0
- scitex/plt/utils/_hitmap/_color_conversion.py +121 -0
- scitex/plt/utils/_hitmap/_constants.py +40 -0
- scitex/plt/utils/_hitmap/_hitmap_core.py +334 -0
- scitex/plt/utils/_hitmap/_path_extraction.py +357 -0
- scitex/plt/utils/_hitmap/_query.py +113 -0
- scitex/plt/utils/_hitmap.py +46 -1616
- scitex/plt/utils/_metadata/__init__.py +80 -0
- scitex/plt/utils/_metadata/_artists/__init__.py +25 -0
- scitex/plt/utils/_metadata/_artists/_base.py +195 -0
- scitex/plt/utils/_metadata/_artists/_collections.py +356 -0
- scitex/plt/utils/_metadata/_artists/_extract.py +57 -0
- scitex/plt/utils/_metadata/_artists/_images.py +80 -0
- scitex/plt/utils/_metadata/_artists/_lines.py +261 -0
- scitex/plt/utils/_metadata/_artists/_patches.py +247 -0
- scitex/plt/utils/_metadata/_artists/_text.py +106 -0
- scitex/plt/utils/_metadata/_csv.py +416 -0
- scitex/plt/utils/_metadata/_detect.py +225 -0
- scitex/plt/utils/_metadata/_legend.py +127 -0
- scitex/plt/utils/_metadata/_rounding.py +117 -0
- scitex/plt/utils/_metadata/_verification.py +202 -0
- scitex/schema/README.md +1 -1
- scitex/scholar/__init__.py +8 -0
- scitex/scholar/_mcp/crossref_handlers.py +265 -0
- scitex/scholar/core/Scholar.py +63 -1700
- scitex/scholar/core/_mixins/__init__.py +36 -0
- scitex/scholar/core/_mixins/_enrichers.py +270 -0
- scitex/scholar/core/_mixins/_library_handlers.py +100 -0
- scitex/scholar/core/_mixins/_loaders.py +103 -0
- scitex/scholar/core/_mixins/_pdf_download.py +375 -0
- scitex/scholar/core/_mixins/_pipeline.py +312 -0
- scitex/scholar/core/_mixins/_project_handlers.py +125 -0
- scitex/scholar/core/_mixins/_savers.py +69 -0
- scitex/scholar/core/_mixins/_search.py +103 -0
- scitex/scholar/core/_mixins/_services.py +88 -0
- scitex/scholar/core/_mixins/_url_finding.py +105 -0
- scitex/scholar/crossref_scitex.py +367 -0
- scitex/scholar/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
- scitex/scholar/examples/00_run_all.sh +120 -0
- scitex/scholar/jobs/_executors.py +27 -3
- scitex/scholar/pdf_download/ScholarPDFDownloader.py +38 -416
- scitex/scholar/pdf_download/_cli.py +154 -0
- scitex/scholar/pdf_download/strategies/__init__.py +11 -8
- scitex/scholar/pdf_download/strategies/manual_download_fallback.py +80 -3
- scitex/scholar/pipelines/ScholarPipelineBibTeX.py +73 -121
- scitex/scholar/pipelines/ScholarPipelineParallel.py +80 -138
- scitex/scholar/pipelines/ScholarPipelineSingle.py +43 -63
- scitex/scholar/pipelines/_single_steps.py +71 -36
- scitex/scholar/storage/_LibraryManager.py +97 -1695
- scitex/scholar/storage/_mixins/__init__.py +30 -0
- scitex/scholar/storage/_mixins/_bibtex_handlers.py +128 -0
- scitex/scholar/storage/_mixins/_library_operations.py +218 -0
- scitex/scholar/storage/_mixins/_metadata_conversion.py +226 -0
- scitex/scholar/storage/_mixins/_paper_saving.py +456 -0
- scitex/scholar/storage/_mixins/_resolution.py +376 -0
- scitex/scholar/storage/_mixins/_storage_helpers.py +121 -0
- scitex/scholar/storage/_mixins/_symlink_handlers.py +226 -0
- scitex/scholar/url_finder/.tmp/open_url/KNOWN_RESOLVERS.py +462 -0
- scitex/scholar/url_finder/.tmp/open_url/README.md +223 -0
- scitex/scholar/url_finder/.tmp/open_url/_DOIToURLResolver.py +694 -0
- scitex/scholar/url_finder/.tmp/open_url/_OpenURLResolver.py +1160 -0
- scitex/scholar/url_finder/.tmp/open_url/_ResolverLinkFinder.py +344 -0
- scitex/scholar/url_finder/.tmp/open_url/__init__.py +24 -0
- scitex/security/README.md +3 -3
- scitex/session/README.md +1 -1
- scitex/session/__init__.py +26 -7
- scitex/session/_decorator.py +1 -1
- scitex/sh/README.md +1 -1
- scitex/sh/__init__.py +7 -4
- scitex/social/__init__.py +155 -0
- scitex/social/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
- scitex/stats/_mcp/_handlers/__init__.py +31 -0
- scitex/stats/_mcp/_handlers/_corrections.py +113 -0
- scitex/stats/_mcp/_handlers/_descriptive.py +78 -0
- scitex/stats/_mcp/_handlers/_effect_size.py +106 -0
- scitex/stats/_mcp/_handlers/_format.py +94 -0
- scitex/stats/_mcp/_handlers/_normality.py +110 -0
- scitex/stats/_mcp/_handlers/_posthoc.py +224 -0
- scitex/stats/_mcp/_handlers/_power.py +247 -0
- scitex/stats/_mcp/_handlers/_recommend.py +102 -0
- scitex/stats/_mcp/_handlers/_run_test.py +279 -0
- scitex/stats/_mcp/_handlers/_stars.py +48 -0
- scitex/stats/_mcp/handlers.py +19 -1171
- scitex/stats/auto/_stat_style.py +175 -0
- scitex/stats/auto/_style_definitions.py +411 -0
- scitex/stats/auto/_styles.py +22 -620
- scitex/stats/descriptive/__init__.py +11 -8
- scitex/stats/descriptive/_ci.py +39 -0
- scitex/stats/power/_power.py +15 -4
- scitex/str/__init__.py +2 -1
- scitex/str/_title_case.py +63 -0
- scitex/template/README.md +1 -1
- scitex/template/__init__.py +25 -10
- scitex/template/_code_templates.py +147 -0
- scitex/template/_mcp/handlers.py +81 -0
- scitex/template/_mcp/tool_schemas.py +55 -0
- scitex/template/_templates/__init__.py +51 -0
- scitex/template/_templates/audio.py +233 -0
- scitex/template/_templates/canvas.py +312 -0
- scitex/template/_templates/capture.py +268 -0
- scitex/template/_templates/config.py +43 -0
- scitex/template/_templates/diagram.py +294 -0
- scitex/template/_templates/io.py +107 -0
- scitex/template/_templates/module.py +53 -0
- scitex/template/_templates/plt.py +202 -0
- scitex/template/_templates/scholar.py +267 -0
- scitex/template/_templates/session.py +130 -0
- scitex/template/_templates/session_minimal.py +43 -0
- scitex/template/_templates/session_plot.py +67 -0
- scitex/template/_templates/session_stats.py +77 -0
- scitex/template/_templates/stats.py +323 -0
- scitex/template/_templates/writer.py +296 -0
- scitex/template/clone_writer_directory.py +5 -5
- scitex/ui/_backends/_email.py +10 -2
- scitex/ui/_backends/_webhook.py +5 -1
- scitex/web/_search_pubmed.py +10 -6
- scitex/writer/README.md +1 -1
- scitex/writer/_mcp/handlers.py +11 -744
- scitex/writer/_mcp/tool_schemas.py +5 -335
- scitex-2.15.2.dist-info/METADATA +648 -0
- {scitex-2.14.0.dist-info → scitex-2.15.2.dist-info}/RECORD +246 -150
- scitex/canvas/editor/flask_editor/templates/_scripts.py +0 -4933
- scitex/canvas/editor/flask_editor/templates/_styles.py +0 -1658
- scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml +0 -90
- scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES.yaml +0 -1571
- scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES_DETAILED.yaml +0 -6262
- scitex/dev/plt/data/mpl/SIGNATURES_FLATTENED.yaml +0 -1274
- scitex/dev/plt/data/mpl/dir_ax.txt +0 -459
- scitex/diagram/_compile.py +0 -312
- scitex/diagram/_diagram.py +0 -355
- scitex/diagram/_mcp/__init__.py +0 -4
- scitex/diagram/_mcp/handlers.py +0 -400
- scitex/diagram/_mcp/tool_schemas.py +0 -157
- scitex/diagram/_presets.py +0 -173
- scitex/diagram/_schema.py +0 -182
- scitex/diagram/_split.py +0 -278
- scitex/gen/_ci.py +0 -12
- scitex/gen/_title_case.py +0 -89
- scitex/plt/_mcp/__init__.py +0 -4
- scitex/plt/_mcp/_handlers_annotation.py +0 -102
- scitex/plt/_mcp/_handlers_figure.py +0 -195
- scitex/plt/_mcp/_handlers_plot.py +0 -252
- scitex/plt/_mcp/_handlers_style.py +0 -219
- scitex/plt/_mcp/handlers.py +0 -74
- scitex/plt/_mcp/tool_schemas.py +0 -497
- scitex/plt/mcp_server.py +0 -231
- scitex/scholar/data/.gitkeep +0 -0
- scitex/scholar/data/README.md +0 -44
- scitex/scholar/data/bib_files/bibliography.bib +0 -1952
- scitex/scholar/data/bib_files/neurovista.bib +0 -277
- scitex/scholar/data/bib_files/neurovista_enriched.bib +0 -441
- scitex/scholar/data/bib_files/neurovista_enriched_enriched.bib +0 -441
- scitex/scholar/data/bib_files/neurovista_processed.bib +0 -338
- scitex/scholar/data/bib_files/openaccess.bib +0 -89
- scitex/scholar/data/bib_files/pac-seizure_prediction_enriched.bib +0 -2178
- scitex/scholar/data/bib_files/pac.bib +0 -698
- scitex/scholar/data/bib_files/pac_enriched.bib +0 -1061
- scitex/scholar/data/bib_files/pac_processed.bib +0 -0
- scitex/scholar/data/bib_files/pac_titles.txt +0 -75
- scitex/scholar/data/bib_files/paywalled.bib +0 -98
- scitex/scholar/data/bib_files/related-papers-by-coauthors.bib +0 -58
- scitex/scholar/data/bib_files/related-papers-by-coauthors_enriched.bib +0 -87
- scitex/scholar/data/bib_files/seizure_prediction.bib +0 -694
- scitex/scholar/data/bib_files/seizure_prediction_processed.bib +0 -0
- scitex/scholar/data/bib_files/test_complete_enriched.bib +0 -437
- scitex/scholar/data/bib_files/test_final_enriched.bib +0 -437
- scitex/scholar/data/bib_files/test_seizure.bib +0 -46
- scitex/scholar/data/impact_factor/JCR_IF_2022.xlsx +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024.db +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024.xlsx +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024_v01.db +0 -0
- scitex/scholar/data/impact_factor.db +0 -0
- scitex/scholar/examples/SUGGESTIONS.md +0 -865
- scitex/scholar/examples/dev.py +0 -38
- scitex-2.14.0.dist-info/METADATA +0 -1238
- /scitex/{gen → context}/_detect_environment.py +0 -0
- /scitex/{gen → context}/_get_notebook_path.py +0 -0
- /scitex/{gen/_shell.py → sh/_shell_legacy.py} +0 -0
- {scitex-2.14.0.dist-info → scitex-2.15.2.dist-info}/WHEEL +0 -0
- {scitex-2.14.0.dist-info → scitex-2.15.2.dist-info}/entry_points.txt +0 -0
- {scitex-2.14.0.dist-info → scitex-2.15.2.dist-info}/licenses/LICENSE +0 -0
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title={Prediction of seizure likelihood with a long-term, implanted seizure advisory system in patients with drug-resistant epilepsy: a first-in-man study},
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author={M. Cook and M. Cook and T. O’Brien and Terence J. O'Brien and S. Berkovic and Michael Murphy and Michael Murphy and Andrew P. Morokoff and Andrew P. Morokoff and G. Fabinyi and W. D'Souza and W. D'Souza and R. Yerra and J. Archer and L. Litewka and S. Hosking and Paul A. Lightfoot and Vanessa Ruedebusch and W. D. Sheffield and David E. Snyder and Kent W. Leyde and David M. Himes},
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title={Epileptic seizure forecasting with long short-term memory (LSTM) neural networks},
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author={D. Payne and Jordan D. Chambers and A. Burkitt and M. J. Cook and Levin Kuhlman and D. Freestone and D. Grayden},
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@article{Dilorenzo2019NeuralSMC,
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title={Neural State Monitoring in the Treatment of Epilepsy: Seizure Prediction—Conceptualization to First-In-Man Study},
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author={D. Dilorenzo and Kent W. Leyde and Dmitry Kaplan},
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@article{Lu2025LeveragingCCD,
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title={Leveraging Channel Coherence in Long-Term iEEG Data for Seizure Prediction},
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author={Sha Lu and Lin Liu and Jiuyong Li and Jordan D. Chambers and M. J. Cook and D. Grayden},
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title={Forecasting Seizures in Dogs with Naturally Occurring Epilepsy},
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author={J. Jeffry Howbert and Edward E Patterson and S. M. Stead and B. Brinkmann and Vincent Vasoli and D. Crepeau and Charles H Vite and B. Sturges and Vanessa Ruedebusch and J. Mavoori and K. Leyde and W. Douglas Sheffield and B. Litt and Gregory A. Worrell and Maxim Bazhenov and Drs Howbert and Sheffield and Leyde},
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journal={PLoS ONE},
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year={2014},
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