scitex 2.14.0__py3-none-any.whl → 2.15.2__py3-none-any.whl

scitex-2.15.2.dist-info/METADATA

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+Metadata-Version: 2.4
+Name: scitex
+Version: 2.15.2
+Summary: A comprehensive Python library for scientific computing and data analysis
+Project-URL: Homepage, https://github.com/ywatanabe1989/scitex-python
+Project-URL: Documentation, https://scitex.readthedocs.io
+Project-URL: Repository, https://github.com/ywatanabe1989/scitex-python
+Project-URL: Bug Tracker, https://github.com/ywatanabe1989/scitex-python/issues
+Author-email: Yusuke Watanabe <ywatanabe@scitex.ai>
+License: AGPL-3.0
+License-File: LICENSE
+Keywords: data-analysis,machine-learning,neural-networks,research,scientific-computing,signal-processing
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: GNU Affero General Public License v3
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
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+Description-Content-Type: text/markdown
+
+<!-- ---
+!-- Timestamp: 2026-01-20 09:23:14
+!-- Author: ywatanabe
+!-- File: /home/ywatanabe/proj/scitex-python/README.md
+!-- --- -->
+
+<p align="center">
+  <a href="https://scitex.ai">
+    <img src="docs/assets/images/scitex-logo-blue-cropped.png" alt="SciTeX" width="400">
+  </a>
+</p>
+
+<p align="center">
+  <a href="https://badge.fury.io/py/scitex"><img src="https://badge.fury.io/py/scitex.svg" alt="PyPI version"></a>
+  <a href="https://pypi.org/project/scitex/"><img src="https://img.shields.io/pypi/pyversions/scitex.svg" alt="Python Versions"></a>
+  <a href="https://github.com/ywatanabe1989/scitex-python/blob/main/LICENSE"><img src="https://img.shields.io/github/license/ywatanabe1989/scitex-python" alt="License"></a>
+  <img src="https://img.shields.io/badge/uv-recommended-blue" alt="uv recommended">
+</p>
+
+<p align="center">
+  <a href="https://scitex.ai">scitex.ai</a> · <code>pip install scitex</code>
+</p>
+
+---
+
+**Modular Python toolkit for scientific research automation — with verification features to ease peer review.**
+
+Empowers both human researchers and AI agents. Each module works independently and adapts to various academic workflows, handling primary and secondary research with real or simulated data.
+
+## 🎬 Demo
+
+**40 min, zero human intervention** — AI agent conducts full research pipeline:
+
+> Literature search → Data analysis → Statistics → Figures → 21-page manuscript → Peer review simulation
+
+<p align="center">
+  <a href="https://scitex.ai/demos/watch/scitex-automated-research/" title="▶ Watch full demo at scitex.ai/demos/">
+    <img src="docs/assets/images/scitex-demo.gif" alt="SciTeX Demo" width="800">
+  </a>
+</p>
+
+## 📦 Installation
+
+``` bash
+uv pip install scitex[all]     # Recommended: Full installation
+uv pip install scitex          # Core only
+```
+
+## Three Interfaces
+
+| Interface | For | Description |
+|-----------|-----|-------------|
+| 🐍 **Python API** | Human researchers | `import scitex as stx` — 70% less code |
+| 🖥️ **CLI Commands** | Terminal users | `scitex scholar fetch`, `scitex stats run` |
+| 🔧 **MCP Tools** | AI agents | 108 tools for Claude/GPT integration |
+
+<details>
+<summary><strong>🐍 Python API</strong></summary>
+
+<br>
+
+**`@stx.session`** — Reproducible Experiment Tracking
+
+```python
+import scitex as stx
+
+@stx.session
+def main(filename="demo.jpg"):
+    fig, ax = stx.plt.subplots()
+    ax.plot_line(t, signal)
+    ax.set_xyt("Time (s)", "Amplitude", "Title")
+    stx.io.save(fig, filename)
+    return 0
+```
+
+**Output**:
+```
+script_out/FINISHED_SUCCESS/2025-01-08_12-30-00_AbC1/
+├── demo.jpg                    # Figure with embedded metadata
+├── demo.csv                    # Auto-exported plot data
+├── CONFIGS/CONFIG.yaml         # Reproducible parameters
+└── logs/{stdout,stderr}.log    # Execution logs
+```
+
+**`stx.io`** — Universal File I/O (30+ formats)
+
+```python
+stx.io.save(df, "output.csv")
+stx.io.save(fig, "output.jpg")
+df = stx.io.load("output.csv")
+```
+
+**`stx.stats`** — Publication-Ready Statistics (23 tests)
+
+```python
+result = stx.stats.test_ttest_ind(group1, group2, return_as="dataframe")
+# Includes: p-value, effect size, CI, normality check, power
+```
+
+→ **[Full module status](./docs/MODULE_STATUS.md)**
+
+</details>
+
+<details>
+<summary><strong>🖥️ CLI Commands</strong></summary>
+
+<br>
+
+```bash
+scitex --help-recursive              # Show all commands
+scitex scholar fetch "10.1038/..."   # Download paper by DOI
+scitex scholar bibtex refs.bib       # Enrich BibTeX
+scitex stats recommend               # Suggest statistical tests
+scitex audio speak "Done"            # Text-to-speech
+scitex capture snap                  # Screenshot
+```
+
+→ **[Full CLI reference](./docs/CLI_COMMANDS.md)**
+
+</details>
+
+<details>
+<summary><strong>🔧 MCP Tools — 108 tools for AI Agents</strong></summary>
+
+<br>
+
+Turn AI agents into autonomous scientific researchers.
+
+**Typical workflow**: Scholar (find papers) → Stats (analyze) → Plt (visualize) → Writer (manuscript) → Capture (verify)
+
+| Category | Tools | Description |
+|----------|-------|-------------|
+| scholar | 23 | PDF download, metadata enrichment |
+| stats | 10 | Automated statistical testing |
+| plt | 9 | Matplotlib figure creation |
+| capture | 12 | Screen monitoring and capture |
+| audio | 10 | Text-to-speech, audio playback |
+| introspect | 11 | Python introspection |
+| diagram | 7 | Mermaid and flowchart creation |
+| canvas | 7 | Scientific figure canvas |
+| social | 9 | Social media posting |
+| template | 4 | Project scaffolding |
+| ui | 5 | Notifications |
+| writer | 1 | LaTeX manuscript compilation |
+
+**Claude Desktop** (`~/.config/claude/claude_desktop_config.json`):
+
+```json
+{
+  "mcpServers": {
+    "scitex": {
+      "command": "scitex",
+      "args": ["mcp", "start"]
+    }
+  }
+}
+```
+
+→ **[Full MCP tool reference](./docs/MCP_TOOLS.md)**
+
+</details>
+
+## 📖 Documentation
+
+- **[Read the Docs](https://scitex.readthedocs.io/)**: Complete API reference
+- **[Example Notebooks](./examples/notebooks/)**: 25+ Jupyter notebooks
+
+## 🤝 Contributing
+
+We welcome contributions! See [CONTRIBUTING.md](CONTRIBUTING.md).
+
+---
+
+<p align="center">
+  <a href="https://scitex.ai" target="_blank"><img src="docs/assets/images/scitex-icon-navy-inverted.png" alt="SciTeX" width="40"/></a>
+  <br>
+  AGPL-3.0 · ywatanabe@scitex.ai
+</p>
+
+<!-- EOF -->