scitex 2.14.0__py3-none-any.whl → 2.15.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (300) hide show
  1. scitex/__init__.py +71 -17
  2. scitex/_env_loader.py +156 -0
  3. scitex/_mcp_resources/__init__.py +37 -0
  4. scitex/_mcp_resources/_cheatsheet.py +135 -0
  5. scitex/_mcp_resources/_figrecipe.py +138 -0
  6. scitex/_mcp_resources/_formats.py +102 -0
  7. scitex/_mcp_resources/_modules.py +337 -0
  8. scitex/_mcp_resources/_session.py +149 -0
  9. scitex/_mcp_tools/__init__.py +4 -0
  10. scitex/_mcp_tools/audio.py +66 -0
  11. scitex/_mcp_tools/diagram.py +11 -95
  12. scitex/_mcp_tools/introspect.py +210 -0
  13. scitex/_mcp_tools/plt.py +260 -305
  14. scitex/_mcp_tools/scholar.py +74 -0
  15. scitex/_mcp_tools/social.py +244 -0
  16. scitex/_mcp_tools/template.py +24 -0
  17. scitex/_mcp_tools/writer.py +21 -204
  18. scitex/ai/_gen_ai/_PARAMS.py +10 -7
  19. scitex/ai/classification/reporters/_SingleClassificationReporter.py +45 -1603
  20. scitex/ai/classification/reporters/_mixins/__init__.py +36 -0
  21. scitex/ai/classification/reporters/_mixins/_constants.py +67 -0
  22. scitex/ai/classification/reporters/_mixins/_cv_summary.py +387 -0
  23. scitex/ai/classification/reporters/_mixins/_feature_importance.py +119 -0
  24. scitex/ai/classification/reporters/_mixins/_metrics.py +275 -0
  25. scitex/ai/classification/reporters/_mixins/_plotting.py +179 -0
  26. scitex/ai/classification/reporters/_mixins/_reports.py +153 -0
  27. scitex/ai/classification/reporters/_mixins/_storage.py +160 -0
  28. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +30 -1550
  29. scitex/ai/classification/timeseries/_sliding_window_core.py +467 -0
  30. scitex/ai/classification/timeseries/_sliding_window_plotting.py +369 -0
  31. scitex/audio/README.md +40 -36
  32. scitex/audio/__init__.py +129 -61
  33. scitex/audio/_branding.py +185 -0
  34. scitex/audio/_mcp/__init__.py +32 -0
  35. scitex/audio/_mcp/handlers.py +59 -6
  36. scitex/audio/_mcp/speak_handlers.py +238 -0
  37. scitex/audio/_relay.py +225 -0
  38. scitex/audio/_tts.py +18 -10
  39. scitex/audio/engines/base.py +17 -10
  40. scitex/audio/engines/elevenlabs_engine.py +7 -2
  41. scitex/audio/mcp_server.py +228 -75
  42. scitex/canvas/README.md +1 -1
  43. scitex/canvas/editor/_dearpygui/__init__.py +25 -0
  44. scitex/canvas/editor/_dearpygui/_editor.py +147 -0
  45. scitex/canvas/editor/_dearpygui/_handlers.py +476 -0
  46. scitex/canvas/editor/_dearpygui/_panels/__init__.py +17 -0
  47. scitex/canvas/editor/_dearpygui/_panels/_control.py +119 -0
  48. scitex/canvas/editor/_dearpygui/_panels/_element_controls.py +190 -0
  49. scitex/canvas/editor/_dearpygui/_panels/_preview.py +43 -0
  50. scitex/canvas/editor/_dearpygui/_panels/_sections.py +390 -0
  51. scitex/canvas/editor/_dearpygui/_plotting.py +187 -0
  52. scitex/canvas/editor/_dearpygui/_rendering.py +504 -0
  53. scitex/canvas/editor/_dearpygui/_selection.py +295 -0
  54. scitex/canvas/editor/_dearpygui/_state.py +93 -0
  55. scitex/canvas/editor/_dearpygui/_utils.py +61 -0
  56. scitex/canvas/editor/flask_editor/_core/__init__.py +27 -0
  57. scitex/canvas/editor/flask_editor/_core/_bbox_extraction.py +200 -0
  58. scitex/canvas/editor/flask_editor/_core/_editor.py +173 -0
  59. scitex/canvas/editor/flask_editor/_core/_export_helpers.py +353 -0
  60. scitex/canvas/editor/flask_editor/_core/_routes_basic.py +190 -0
  61. scitex/canvas/editor/flask_editor/_core/_routes_export.py +332 -0
  62. scitex/canvas/editor/flask_editor/_core/_routes_panels.py +252 -0
  63. scitex/canvas/editor/flask_editor/_core/_routes_save.py +218 -0
  64. scitex/canvas/editor/flask_editor/_core.py +25 -1684
  65. scitex/canvas/editor/flask_editor/templates/__init__.py +32 -70
  66. scitex/cli/__init__.py +38 -43
  67. scitex/cli/audio.py +76 -27
  68. scitex/cli/capture.py +13 -20
  69. scitex/cli/introspect.py +481 -0
  70. scitex/cli/main.py +200 -109
  71. scitex/cli/mcp.py +60 -34
  72. scitex/cli/plt.py +357 -0
  73. scitex/cli/repro.py +15 -8
  74. scitex/cli/resource.py +15 -8
  75. scitex/cli/scholar/__init__.py +23 -8
  76. scitex/cli/scholar/_crossref_scitex.py +296 -0
  77. scitex/cli/scholar/_fetch.py +25 -3
  78. scitex/cli/social.py +314 -0
  79. scitex/cli/stats.py +15 -8
  80. scitex/cli/template.py +129 -12
  81. scitex/cli/tex.py +15 -8
  82. scitex/cli/writer.py +132 -8
  83. scitex/cloud/__init__.py +41 -2
  84. scitex/config/README.md +1 -1
  85. scitex/config/__init__.py +16 -2
  86. scitex/config/_env_registry.py +256 -0
  87. scitex/context/__init__.py +22 -0
  88. scitex/dev/__init__.py +20 -1
  89. scitex/diagram/__init__.py +42 -19
  90. scitex/diagram/mcp_server.py +13 -125
  91. scitex/gen/__init__.py +50 -14
  92. scitex/gen/_list_packages.py +4 -4
  93. scitex/introspect/__init__.py +82 -0
  94. scitex/introspect/_call_graph.py +303 -0
  95. scitex/introspect/_class_hierarchy.py +163 -0
  96. scitex/introspect/_core.py +41 -0
  97. scitex/introspect/_docstring.py +131 -0
  98. scitex/introspect/_examples.py +113 -0
  99. scitex/introspect/_imports.py +271 -0
  100. scitex/{gen/_inspect_module.py → introspect/_list_api.py} +43 -54
  101. scitex/introspect/_mcp/__init__.py +41 -0
  102. scitex/introspect/_mcp/handlers.py +233 -0
  103. scitex/introspect/_members.py +155 -0
  104. scitex/introspect/_resolve.py +89 -0
  105. scitex/introspect/_signature.py +131 -0
  106. scitex/introspect/_source.py +80 -0
  107. scitex/introspect/_type_hints.py +172 -0
  108. scitex/io/_save.py +1 -2
  109. scitex/io/bundle/README.md +1 -1
  110. scitex/logging/_formatters.py +19 -9
  111. scitex/mcp_server.py +98 -5
  112. scitex/os/__init__.py +4 -0
  113. scitex/{gen → os}/_check_host.py +4 -5
  114. scitex/plt/__init__.py +245 -550
  115. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/_wrappers.py +5 -10
  116. scitex/plt/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  117. scitex/plt/gallery/README.md +1 -1
  118. scitex/plt/utils/_hitmap/__init__.py +82 -0
  119. scitex/plt/utils/_hitmap/_artist_extraction.py +343 -0
  120. scitex/plt/utils/_hitmap/_color_application.py +346 -0
  121. scitex/plt/utils/_hitmap/_color_conversion.py +121 -0
  122. scitex/plt/utils/_hitmap/_constants.py +40 -0
  123. scitex/plt/utils/_hitmap/_hitmap_core.py +334 -0
  124. scitex/plt/utils/_hitmap/_path_extraction.py +357 -0
  125. scitex/plt/utils/_hitmap/_query.py +113 -0
  126. scitex/plt/utils/_hitmap.py +46 -1616
  127. scitex/plt/utils/_metadata/__init__.py +80 -0
  128. scitex/plt/utils/_metadata/_artists/__init__.py +25 -0
  129. scitex/plt/utils/_metadata/_artists/_base.py +195 -0
  130. scitex/plt/utils/_metadata/_artists/_collections.py +356 -0
  131. scitex/plt/utils/_metadata/_artists/_extract.py +57 -0
  132. scitex/plt/utils/_metadata/_artists/_images.py +80 -0
  133. scitex/plt/utils/_metadata/_artists/_lines.py +261 -0
  134. scitex/plt/utils/_metadata/_artists/_patches.py +247 -0
  135. scitex/plt/utils/_metadata/_artists/_text.py +106 -0
  136. scitex/plt/utils/_metadata/_csv.py +416 -0
  137. scitex/plt/utils/_metadata/_detect.py +225 -0
  138. scitex/plt/utils/_metadata/_legend.py +127 -0
  139. scitex/plt/utils/_metadata/_rounding.py +117 -0
  140. scitex/plt/utils/_metadata/_verification.py +202 -0
  141. scitex/schema/README.md +1 -1
  142. scitex/scholar/__init__.py +8 -0
  143. scitex/scholar/_mcp/crossref_handlers.py +265 -0
  144. scitex/scholar/core/Scholar.py +63 -1700
  145. scitex/scholar/core/_mixins/__init__.py +36 -0
  146. scitex/scholar/core/_mixins/_enrichers.py +270 -0
  147. scitex/scholar/core/_mixins/_library_handlers.py +100 -0
  148. scitex/scholar/core/_mixins/_loaders.py +103 -0
  149. scitex/scholar/core/_mixins/_pdf_download.py +375 -0
  150. scitex/scholar/core/_mixins/_pipeline.py +312 -0
  151. scitex/scholar/core/_mixins/_project_handlers.py +125 -0
  152. scitex/scholar/core/_mixins/_savers.py +69 -0
  153. scitex/scholar/core/_mixins/_search.py +103 -0
  154. scitex/scholar/core/_mixins/_services.py +88 -0
  155. scitex/scholar/core/_mixins/_url_finding.py +105 -0
  156. scitex/scholar/crossref_scitex.py +367 -0
  157. scitex/scholar/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  158. scitex/scholar/examples/00_run_all.sh +120 -0
  159. scitex/scholar/jobs/_executors.py +27 -3
  160. scitex/scholar/pdf_download/ScholarPDFDownloader.py +38 -416
  161. scitex/scholar/pdf_download/_cli.py +154 -0
  162. scitex/scholar/pdf_download/strategies/__init__.py +11 -8
  163. scitex/scholar/pdf_download/strategies/manual_download_fallback.py +80 -3
  164. scitex/scholar/pipelines/ScholarPipelineBibTeX.py +73 -121
  165. scitex/scholar/pipelines/ScholarPipelineParallel.py +80 -138
  166. scitex/scholar/pipelines/ScholarPipelineSingle.py +43 -63
  167. scitex/scholar/pipelines/_single_steps.py +71 -36
  168. scitex/scholar/storage/_LibraryManager.py +97 -1695
  169. scitex/scholar/storage/_mixins/__init__.py +30 -0
  170. scitex/scholar/storage/_mixins/_bibtex_handlers.py +128 -0
  171. scitex/scholar/storage/_mixins/_library_operations.py +218 -0
  172. scitex/scholar/storage/_mixins/_metadata_conversion.py +226 -0
  173. scitex/scholar/storage/_mixins/_paper_saving.py +456 -0
  174. scitex/scholar/storage/_mixins/_resolution.py +376 -0
  175. scitex/scholar/storage/_mixins/_storage_helpers.py +121 -0
  176. scitex/scholar/storage/_mixins/_symlink_handlers.py +226 -0
  177. scitex/scholar/url_finder/.tmp/open_url/KNOWN_RESOLVERS.py +462 -0
  178. scitex/scholar/url_finder/.tmp/open_url/README.md +223 -0
  179. scitex/scholar/url_finder/.tmp/open_url/_DOIToURLResolver.py +694 -0
  180. scitex/scholar/url_finder/.tmp/open_url/_OpenURLResolver.py +1160 -0
  181. scitex/scholar/url_finder/.tmp/open_url/_ResolverLinkFinder.py +344 -0
  182. scitex/scholar/url_finder/.tmp/open_url/__init__.py +24 -0
  183. scitex/security/README.md +3 -3
  184. scitex/session/README.md +1 -1
  185. scitex/session/__init__.py +26 -7
  186. scitex/session/_decorator.py +1 -1
  187. scitex/sh/README.md +1 -1
  188. scitex/sh/__init__.py +7 -4
  189. scitex/social/__init__.py +155 -0
  190. scitex/social/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  191. scitex/stats/_mcp/_handlers/__init__.py +31 -0
  192. scitex/stats/_mcp/_handlers/_corrections.py +113 -0
  193. scitex/stats/_mcp/_handlers/_descriptive.py +78 -0
  194. scitex/stats/_mcp/_handlers/_effect_size.py +106 -0
  195. scitex/stats/_mcp/_handlers/_format.py +94 -0
  196. scitex/stats/_mcp/_handlers/_normality.py +110 -0
  197. scitex/stats/_mcp/_handlers/_posthoc.py +224 -0
  198. scitex/stats/_mcp/_handlers/_power.py +247 -0
  199. scitex/stats/_mcp/_handlers/_recommend.py +102 -0
  200. scitex/stats/_mcp/_handlers/_run_test.py +279 -0
  201. scitex/stats/_mcp/_handlers/_stars.py +48 -0
  202. scitex/stats/_mcp/handlers.py +19 -1171
  203. scitex/stats/auto/_stat_style.py +175 -0
  204. scitex/stats/auto/_style_definitions.py +411 -0
  205. scitex/stats/auto/_styles.py +22 -620
  206. scitex/stats/descriptive/__init__.py +11 -8
  207. scitex/stats/descriptive/_ci.py +39 -0
  208. scitex/stats/power/_power.py +15 -4
  209. scitex/str/__init__.py +2 -1
  210. scitex/str/_title_case.py +63 -0
  211. scitex/template/README.md +1 -1
  212. scitex/template/__init__.py +25 -10
  213. scitex/template/_code_templates.py +147 -0
  214. scitex/template/_mcp/handlers.py +81 -0
  215. scitex/template/_mcp/tool_schemas.py +55 -0
  216. scitex/template/_templates/__init__.py +51 -0
  217. scitex/template/_templates/audio.py +233 -0
  218. scitex/template/_templates/canvas.py +312 -0
  219. scitex/template/_templates/capture.py +268 -0
  220. scitex/template/_templates/config.py +43 -0
  221. scitex/template/_templates/diagram.py +294 -0
  222. scitex/template/_templates/io.py +107 -0
  223. scitex/template/_templates/module.py +53 -0
  224. scitex/template/_templates/plt.py +202 -0
  225. scitex/template/_templates/scholar.py +267 -0
  226. scitex/template/_templates/session.py +130 -0
  227. scitex/template/_templates/session_minimal.py +43 -0
  228. scitex/template/_templates/session_plot.py +67 -0
  229. scitex/template/_templates/session_stats.py +77 -0
  230. scitex/template/_templates/stats.py +323 -0
  231. scitex/template/_templates/writer.py +296 -0
  232. scitex/template/clone_writer_directory.py +5 -5
  233. scitex/ui/_backends/_email.py +10 -2
  234. scitex/ui/_backends/_webhook.py +5 -1
  235. scitex/web/_search_pubmed.py +10 -6
  236. scitex/writer/README.md +1 -1
  237. scitex/writer/_mcp/handlers.py +11 -744
  238. scitex/writer/_mcp/tool_schemas.py +5 -335
  239. scitex-2.15.2.dist-info/METADATA +648 -0
  240. {scitex-2.14.0.dist-info → scitex-2.15.2.dist-info}/RECORD +246 -150
  241. scitex/canvas/editor/flask_editor/templates/_scripts.py +0 -4933
  242. scitex/canvas/editor/flask_editor/templates/_styles.py +0 -1658
  243. scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml +0 -90
  244. scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES.yaml +0 -1571
  245. scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES_DETAILED.yaml +0 -6262
  246. scitex/dev/plt/data/mpl/SIGNATURES_FLATTENED.yaml +0 -1274
  247. scitex/dev/plt/data/mpl/dir_ax.txt +0 -459
  248. scitex/diagram/_compile.py +0 -312
  249. scitex/diagram/_diagram.py +0 -355
  250. scitex/diagram/_mcp/__init__.py +0 -4
  251. scitex/diagram/_mcp/handlers.py +0 -400
  252. scitex/diagram/_mcp/tool_schemas.py +0 -157
  253. scitex/diagram/_presets.py +0 -173
  254. scitex/diagram/_schema.py +0 -182
  255. scitex/diagram/_split.py +0 -278
  256. scitex/gen/_ci.py +0 -12
  257. scitex/gen/_title_case.py +0 -89
  258. scitex/plt/_mcp/__init__.py +0 -4
  259. scitex/plt/_mcp/_handlers_annotation.py +0 -102
  260. scitex/plt/_mcp/_handlers_figure.py +0 -195
  261. scitex/plt/_mcp/_handlers_plot.py +0 -252
  262. scitex/plt/_mcp/_handlers_style.py +0 -219
  263. scitex/plt/_mcp/handlers.py +0 -74
  264. scitex/plt/_mcp/tool_schemas.py +0 -497
  265. scitex/plt/mcp_server.py +0 -231
  266. scitex/scholar/data/.gitkeep +0 -0
  267. scitex/scholar/data/README.md +0 -44
  268. scitex/scholar/data/bib_files/bibliography.bib +0 -1952
  269. scitex/scholar/data/bib_files/neurovista.bib +0 -277
  270. scitex/scholar/data/bib_files/neurovista_enriched.bib +0 -441
  271. scitex/scholar/data/bib_files/neurovista_enriched_enriched.bib +0 -441
  272. scitex/scholar/data/bib_files/neurovista_processed.bib +0 -338
  273. scitex/scholar/data/bib_files/openaccess.bib +0 -89
  274. scitex/scholar/data/bib_files/pac-seizure_prediction_enriched.bib +0 -2178
  275. scitex/scholar/data/bib_files/pac.bib +0 -698
  276. scitex/scholar/data/bib_files/pac_enriched.bib +0 -1061
  277. scitex/scholar/data/bib_files/pac_processed.bib +0 -0
  278. scitex/scholar/data/bib_files/pac_titles.txt +0 -75
  279. scitex/scholar/data/bib_files/paywalled.bib +0 -98
  280. scitex/scholar/data/bib_files/related-papers-by-coauthors.bib +0 -58
  281. scitex/scholar/data/bib_files/related-papers-by-coauthors_enriched.bib +0 -87
  282. scitex/scholar/data/bib_files/seizure_prediction.bib +0 -694
  283. scitex/scholar/data/bib_files/seizure_prediction_processed.bib +0 -0
  284. scitex/scholar/data/bib_files/test_complete_enriched.bib +0 -437
  285. scitex/scholar/data/bib_files/test_final_enriched.bib +0 -437
  286. scitex/scholar/data/bib_files/test_seizure.bib +0 -46
  287. scitex/scholar/data/impact_factor/JCR_IF_2022.xlsx +0 -0
  288. scitex/scholar/data/impact_factor/JCR_IF_2024.db +0 -0
  289. scitex/scholar/data/impact_factor/JCR_IF_2024.xlsx +0 -0
  290. scitex/scholar/data/impact_factor/JCR_IF_2024_v01.db +0 -0
  291. scitex/scholar/data/impact_factor.db +0 -0
  292. scitex/scholar/examples/SUGGESTIONS.md +0 -865
  293. scitex/scholar/examples/dev.py +0 -38
  294. scitex-2.14.0.dist-info/METADATA +0 -1238
  295. /scitex/{gen → context}/_detect_environment.py +0 -0
  296. /scitex/{gen → context}/_get_notebook_path.py +0 -0
  297. /scitex/{gen/_shell.py → sh/_shell_legacy.py} +0 -0
  298. {scitex-2.14.0.dist-info → scitex-2.15.2.dist-info}/WHEEL +0 -0
  299. {scitex-2.14.0.dist-info → scitex-2.15.2.dist-info}/entry_points.txt +0 -0
  300. {scitex-2.14.0.dist-info → scitex-2.15.2.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,265 @@
1
+ #!/usr/bin/env python3
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+ # Timestamp: 2026-01-24
3
+ # File: src/scitex/scholar/_mcp/crossref_handlers.py
4
+ """CrossRef-SciTeX handler implementations via crossref-local delegation.
5
+
6
+ These handlers delegate to crossref-local for fast access to 167M+ papers.
7
+ Branded as crossref-scitex to distinguish from official CrossRef API.
8
+ """
9
+
10
+ from __future__ import annotations
11
+
12
+ import asyncio
13
+ from datetime import datetime
14
+
15
+ __all__ = [
16
+ "crossref_search_handler",
17
+ "crossref_get_handler",
18
+ "crossref_count_handler",
19
+ "crossref_citations_handler",
20
+ "crossref_info_handler",
21
+ ]
22
+
23
+
24
+ def _ensure_crossref():
25
+ """Ensure crossref_scitex module is available."""
26
+ try:
27
+ from scitex.scholar import crossref_scitex
28
+
29
+ return crossref_scitex
30
+ except ImportError as e:
31
+ raise RuntimeError(
32
+ "crossref-local not installed. Install with: pip install crossref-local"
33
+ ) from e
34
+
35
+
36
+ async def crossref_search_handler(
37
+ query: str,
38
+ limit: int = 20,
39
+ offset: int = 0,
40
+ year_min: int | None = None,
41
+ year_max: int | None = None,
42
+ enrich: bool = False,
43
+ ) -> dict:
44
+ """Search CrossRef database (167M+ papers) via crossref-local.
45
+
46
+ Args:
47
+ query: Search query string (full-text search)
48
+ limit: Maximum number of results (default: 20)
49
+ offset: Number of results to skip for pagination
50
+ year_min: Minimum publication year filter
51
+ year_max: Maximum publication year filter
52
+ enrich: If True, add citation counts and references
53
+ """
54
+ try:
55
+ crossref = _ensure_crossref()
56
+ loop = asyncio.get_running_loop()
57
+
58
+ def do_search():
59
+ # Fetch more results for filtering
60
+ fetch_limit = limit * 2 if (year_min or year_max) else limit
61
+ results = crossref.search(query, limit=fetch_limit, offset=offset)
62
+
63
+ if enrich:
64
+ results = crossref.enrich(results)
65
+
66
+ papers = []
67
+ for work in results:
68
+ # Apply year filters
69
+ if year_min and work.year and work.year < year_min:
70
+ continue
71
+ if year_max and work.year and work.year > year_max:
72
+ continue
73
+
74
+ papers.append(
75
+ {
76
+ "doi": work.doi,
77
+ "title": work.title,
78
+ "authors": work.authors[:10] if work.authors else [],
79
+ "year": work.year,
80
+ "journal": work.journal,
81
+ "abstract": (
82
+ work.abstract[:500] + "..."
83
+ if work.abstract and len(work.abstract) > 500
84
+ else work.abstract
85
+ ),
86
+ "citation_count": work.citation_count,
87
+ "reference_count": work.reference_count,
88
+ "type": work.type,
89
+ }
90
+ )
91
+ if len(papers) >= limit:
92
+ break
93
+
94
+ return papers, results.total
95
+
96
+ papers, total = await loop.run_in_executor(None, do_search)
97
+
98
+ return {
99
+ "success": True,
100
+ "query": query,
101
+ "total": total,
102
+ "count": len(papers),
103
+ "offset": offset,
104
+ "limit": limit,
105
+ "papers": papers,
106
+ "source": "crossref_local",
107
+ "timestamp": datetime.now().isoformat(),
108
+ }
109
+
110
+ except Exception as e:
111
+ return {"success": False, "error": str(e)}
112
+
113
+
114
+ async def crossref_get_handler(
115
+ doi: str,
116
+ include_citations: bool = False,
117
+ include_references: bool = False,
118
+ ) -> dict:
119
+ """Get a paper by DOI from CrossRef database.
120
+
121
+ Args:
122
+ doi: DOI of the paper
123
+ include_citations: Include list of citing DOIs
124
+ include_references: Include list of referenced DOIs
125
+ """
126
+ try:
127
+ crossref = _ensure_crossref()
128
+ loop = asyncio.get_running_loop()
129
+
130
+ def do_get():
131
+ work = crossref.get(doi)
132
+ if not work:
133
+ return None
134
+
135
+ result = {
136
+ "doi": work.doi,
137
+ "title": work.title,
138
+ "authors": work.authors,
139
+ "year": work.year,
140
+ "journal": work.journal,
141
+ "abstract": work.abstract,
142
+ "citation_count": work.citation_count,
143
+ "reference_count": work.reference_count,
144
+ "type": work.type,
145
+ "publisher": work.publisher,
146
+ "url": work.url,
147
+ }
148
+
149
+ if include_citations:
150
+ result["citing_dois"] = crossref.get_citing(doi)
151
+
152
+ if include_references:
153
+ result["referenced_dois"] = crossref.get_cited(doi)
154
+
155
+ return result
156
+
157
+ result = await loop.run_in_executor(None, do_get)
158
+
159
+ if result is None:
160
+ return {
161
+ "success": False,
162
+ "error": f"DOI not found: {doi}",
163
+ "doi": doi,
164
+ }
165
+
166
+ return {
167
+ "success": True,
168
+ "paper": result,
169
+ "source": "crossref_local",
170
+ "timestamp": datetime.now().isoformat(),
171
+ }
172
+
173
+ except Exception as e:
174
+ return {"success": False, "error": str(e)}
175
+
176
+
177
+ async def crossref_count_handler(query: str) -> dict:
178
+ """Count papers matching a search query.
179
+
180
+ Args:
181
+ query: Search query string
182
+ """
183
+ try:
184
+ crossref = _ensure_crossref()
185
+ loop = asyncio.get_running_loop()
186
+
187
+ count = await loop.run_in_executor(None, crossref.count, query)
188
+
189
+ return {
190
+ "success": True,
191
+ "query": query,
192
+ "count": count,
193
+ "source": "crossref_local",
194
+ "timestamp": datetime.now().isoformat(),
195
+ }
196
+
197
+ except Exception as e:
198
+ return {"success": False, "error": str(e)}
199
+
200
+
201
+ async def crossref_citations_handler(
202
+ doi: str,
203
+ direction: str = "citing", # "citing", "cited", or "both"
204
+ limit: int = 100,
205
+ ) -> dict:
206
+ """Get citation relationships for a paper.
207
+
208
+ Args:
209
+ doi: DOI of the paper
210
+ direction: "citing" (papers that cite this), "cited" (references), or "both"
211
+ limit: Maximum number of results per direction
212
+ """
213
+ try:
214
+ crossref = _ensure_crossref()
215
+ loop = asyncio.get_running_loop()
216
+
217
+ def do_citations():
218
+ result = {"doi": doi}
219
+
220
+ if direction in ("citing", "both"):
221
+ citing = crossref.get_citing(doi)
222
+ result["citing_dois"] = citing[:limit]
223
+ result["citing_count"] = len(citing)
224
+
225
+ if direction in ("cited", "both"):
226
+ cited = crossref.get_cited(doi)
227
+ result["cited_dois"] = cited[:limit]
228
+ result["cited_count"] = len(cited)
229
+
230
+ return result
231
+
232
+ result = await loop.run_in_executor(None, do_citations)
233
+
234
+ return {
235
+ "success": True,
236
+ **result,
237
+ "direction": direction,
238
+ "source": "crossref_local",
239
+ "timestamp": datetime.now().isoformat(),
240
+ }
241
+
242
+ except Exception as e:
243
+ return {"success": False, "error": str(e)}
244
+
245
+
246
+ async def crossref_info_handler() -> dict:
247
+ """Get information about CrossRef database configuration and status."""
248
+ try:
249
+ crossref = _ensure_crossref()
250
+ loop = asyncio.get_running_loop()
251
+
252
+ info = await loop.run_in_executor(None, crossref.info)
253
+
254
+ return {
255
+ "success": True,
256
+ "info": info,
257
+ "mode": crossref.get_mode(),
258
+ "timestamp": datetime.now().isoformat(),
259
+ }
260
+
261
+ except Exception as e:
262
+ return {"success": False, "error": str(e)}
263
+
264
+
265
+ # EOF