scitex 2.14.0__py3-none-any.whl → 2.15.1__py3-none-any.whl

scitex/plt/mcp_server.py

@@ -1,231 +0,0 @@
-#!/usr/bin/env python3
-# Timestamp: 2026-01-08
-# File: src/scitex/plt/mcp_server.py
-# ----------------------------------------
-
-"""
-MCP Server for SciTeX plt - Publication-quality plotting.
-
-Provides tools for:
-- Style configuration (get/set publication styles)
-- Style presets (journal-specific configurations)
-- Figure cropping (auto-crop whitespace)
-- DPI management
-- Color palette access
-"""
-
-from __future__ import annotations
-
-import asyncio
-
-# Graceful MCP dependency handling
-try:
-    import mcp.types as types
-    from mcp.server import NotificationOptions, Server
-    from mcp.server.models import InitializationOptions
-    from mcp.server.stdio import stdio_server
-
-    MCP_AVAILABLE = True
-except ImportError:
-    MCP_AVAILABLE = False
-    types = None  # type: ignore
-    Server = None  # type: ignore
-    NotificationOptions = None  # type: ignore
-    InitializationOptions = None  # type: ignore
-    stdio_server = None  # type: ignore
-
-__all__ = ["PltServer", "main", "MCP_AVAILABLE"]
-
-
-class PltServer:
-    """MCP Server for Publication-quality Plotting."""
-
-    def __init__(self):
-        self.server = Server("scitex-plt")
-        self.setup_handlers()
-
-    def setup_handlers(self):
-        """Set up MCP server handlers."""
-        from ._mcp.handlers import (
-            add_panel_label_handler,
-            add_significance_handler,
-            close_figure_handler,
-            create_figure_handler,
-            crop_figure_handler,
-            get_color_palette_handler,
-            get_dpi_settings_handler,
-            get_style_handler,
-            list_presets_handler,
-            plot_bar_handler,
-            plot_box_handler,
-            plot_line_handler,
-            plot_scatter_handler,
-            plot_violin_handler,
-            save_figure_handler,
-            set_style_handler,
-        )
-        from ._mcp.tool_schemas import get_tool_schemas
-
-        @self.server.list_tools()
-        async def handle_list_tools():
-            return get_tool_schemas()
-
-        @self.server.call_tool()
-        async def handle_call_tool(name: str, arguments: dict):
-            # Style tools
-            if name == "get_style":
-                return await self._wrap_result(get_style_handler())
-            elif name == "set_style":
-                return await self._wrap_result(set_style_handler(**arguments))
-            elif name == "list_presets":
-                return await self._wrap_result(list_presets_handler())
-            elif name == "crop_figure":
-                return await self._wrap_result(crop_figure_handler(**arguments))
-            elif name == "get_dpi_settings":
-                return await self._wrap_result(get_dpi_settings_handler())
-            elif name == "get_color_palette":
-                return await self._wrap_result(get_color_palette_handler(**arguments))
-            # Plotting tools
-            elif name == "create_figure":
-                return await self._wrap_result(create_figure_handler(**arguments))
-            elif name == "plot_bar":
-                return await self._wrap_result(plot_bar_handler(**arguments))
-            elif name == "plot_scatter":
-                return await self._wrap_result(plot_scatter_handler(**arguments))
-            elif name == "plot_line":
-                return await self._wrap_result(plot_line_handler(**arguments))
-            elif name == "plot_box":
-                return await self._wrap_result(plot_box_handler(**arguments))
-            elif name == "plot_violin":
-                return await self._wrap_result(plot_violin_handler(**arguments))
-            elif name == "add_significance":
-                return await self._wrap_result(add_significance_handler(**arguments))
-            elif name == "add_panel_label":
-                return await self._wrap_result(add_panel_label_handler(**arguments))
-            elif name == "save_figure":
-                return await self._wrap_result(save_figure_handler(**arguments))
-            elif name == "close_figure":
-                return await self._wrap_result(close_figure_handler(**arguments))
-            else:
-                raise ValueError(f"Unknown tool: {name}")
-
-        @self.server.list_resources()
-        async def handle_list_resources():
-            """List available plt resources."""
-            resources = [
-                types.Resource(
-                    uri="plt://style/current",
-                    name="Current Style",
-                    description="Current publication style configuration",
-                    mimeType="application/json",
-                ),
-                types.Resource(
-                    uri="plt://presets",
-                    name="Style Presets",
-                    description="Available journal style presets",
-                    mimeType="application/json",
-                ),
-                types.Resource(
-                    uri="plt://colors",
-                    name="Color Palette",
-                    description="SciTeX color palette",
-                    mimeType="application/json",
-                ),
-            ]
-            return resources
-
-        @self.server.read_resource()
-        async def handle_read_resource(uri: str):
-            """Read a plt resource."""
-            import json
-
-            if uri == "plt://style/current":
-                result = await get_style_handler()
-                return types.TextResourceContents(
-                    uri=uri,
-                    mimeType="application/json",
-                    text=json.dumps(result, indent=2),
-                )
-
-            elif uri == "plt://presets":
-                result = await list_presets_handler()
-                return types.TextResourceContents(
-                    uri=uri,
-                    mimeType="application/json",
-                    text=json.dumps(result, indent=2),
-                )
-
-            elif uri == "plt://colors":
-                result = await get_color_palette_handler()
-                return types.TextResourceContents(
-                    uri=uri,
-                    mimeType="application/json",
-                    text=json.dumps(result, indent=2),
-                )
-
-            else:
-                raise ValueError(f"Unknown resource URI: {uri}")
-
-    async def _wrap_result(self, coro):
-        """Wrap handler result as MCP TextContent."""
-        import json
-
-        try:
-            result = await coro
-            return [
-                types.TextContent(
-                    type="text",
-                    text=json.dumps(result, indent=2, default=str),
-                )
-            ]
-        except Exception as e:
-            return [
-                types.TextContent(
-                    type="text",
-                    text=json.dumps({"success": False, "error": str(e)}, indent=2),
-                )
-            ]
-
-
-async def _run_server():
-    """Run the MCP server (internal)."""
-    server = PltServer()
-    async with stdio_server() as (read_stream, write_stream):
-        await server.server.run(
-            read_stream,
-            write_stream,
-            InitializationOptions(
-                server_name="scitex-plt",
-                server_version="0.1.0",
-                capabilities=server.server.get_capabilities(
-                    notification_options=NotificationOptions(),
-                    experimental_capabilities={},
-                ),
-            ),
-        )
-
-
-def main():
-    """Main entry point for the MCP server."""
-    if not MCP_AVAILABLE:
-        import sys
-
-        print("=" * 60)
-        print("MCP Server 'scitex-plt' requires the 'mcp' package.")
-        print()
-        print("Install with:")
-        print("  pip install mcp")
-        print()
-        print("Or install scitex with MCP support:")
-        print("  pip install scitex[mcp]")
-        print("=" * 60)
-        sys.exit(1)
-
-    asyncio.run(_run_server())
-
-
-if __name__ == "__main__":
-    main()
-
-
-# EOF

scitex/scholar/data/README.md

@@ -1,44 +0,0 @@
-# Scholar Data Directory
-
-User-provided data files. This directory is gitignored.
-
-## Structure
-
-```
-data/
-└── impact_factor/
-    ├── JCR_IF_2024.xlsx         # JCR Excel file (user-provided)
-    ├── JCR_IF_2024.db           # SQLite database (generated)
-    └── impact_factor.db -> JCR_IF_2024.db (symlink to active DB)
-```
-
-## Important
-
-- **Data NOT included in git**: This directory is gitignored
-- **User responsibility**: Users must provide their own JCR data
-- **Licensing**: Users must ensure proper licensing for any data
-
-## Adding JCR Data
-
-1. Obtain JCR Excel file from Clarivate or authorized source
-2. Place in `src/scitex/scholar/data/impact_factor/JCR_IF_YYYY.xlsx`
-3. Build database (optional - will auto-build if needed):
-   ```python
-   from scitex.scholar.impact_factor.jcr import build_database
-   build_database("JCR_IF_2024.xlsx")
-   ```
-
-## File Naming Convention
-
-- Excel: `JCR_IF_YYYY.xlsx` (e.g., JCR_IF_2024.xlsx)
-- Database: `JCR_IF_YYYY.db` (e.g., JCR_IF_2024.db)
-- Symlink: `impact_factor.db` → points to current year DB
-
-## Legal Notice
-
-JCR data is proprietary (Clarivate Analytics). Users are responsible for:
-- Obtaining data through authorized channels
-- Compliance with licensing terms
-- Not distributing data files
-
-We provide only the code to use the data, not the data itself.