scitex 2.14.0__py3-none-any.whl → 2.15.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +47 -0
- scitex/_env_loader.py +156 -0
- scitex/_mcp_resources/__init__.py +37 -0
- scitex/_mcp_resources/_cheatsheet.py +135 -0
- scitex/_mcp_resources/_figrecipe.py +138 -0
- scitex/_mcp_resources/_formats.py +102 -0
- scitex/_mcp_resources/_modules.py +337 -0
- scitex/_mcp_resources/_session.py +149 -0
- scitex/_mcp_tools/__init__.py +4 -0
- scitex/_mcp_tools/audio.py +66 -0
- scitex/_mcp_tools/diagram.py +11 -95
- scitex/_mcp_tools/introspect.py +191 -0
- scitex/_mcp_tools/plt.py +260 -305
- scitex/_mcp_tools/scholar.py +74 -0
- scitex/_mcp_tools/social.py +244 -0
- scitex/_mcp_tools/writer.py +21 -204
- scitex/ai/_gen_ai/_PARAMS.py +10 -7
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +45 -1603
- scitex/ai/classification/reporters/_mixins/__init__.py +36 -0
- scitex/ai/classification/reporters/_mixins/_constants.py +67 -0
- scitex/ai/classification/reporters/_mixins/_cv_summary.py +387 -0
- scitex/ai/classification/reporters/_mixins/_feature_importance.py +119 -0
- scitex/ai/classification/reporters/_mixins/_metrics.py +275 -0
- scitex/ai/classification/reporters/_mixins/_plotting.py +179 -0
- scitex/ai/classification/reporters/_mixins/_reports.py +153 -0
- scitex/ai/classification/reporters/_mixins/_storage.py +160 -0
- scitex/audio/README.md +40 -36
- scitex/audio/__init__.py +127 -59
- scitex/audio/_branding.py +185 -0
- scitex/audio/_mcp/__init__.py +32 -0
- scitex/audio/_mcp/handlers.py +59 -6
- scitex/audio/_mcp/speak_handlers.py +238 -0
- scitex/audio/_relay.py +225 -0
- scitex/audio/engines/elevenlabs_engine.py +6 -1
- scitex/audio/mcp_server.py +228 -75
- scitex/canvas/README.md +1 -1
- scitex/canvas/editor/_dearpygui/__init__.py +25 -0
- scitex/canvas/editor/_dearpygui/_editor.py +147 -0
- scitex/canvas/editor/_dearpygui/_handlers.py +476 -0
- scitex/canvas/editor/_dearpygui/_panels/__init__.py +17 -0
- scitex/canvas/editor/_dearpygui/_panels/_control.py +119 -0
- scitex/canvas/editor/_dearpygui/_panels/_element_controls.py +190 -0
- scitex/canvas/editor/_dearpygui/_panels/_preview.py +43 -0
- scitex/canvas/editor/_dearpygui/_panels/_sections.py +390 -0
- scitex/canvas/editor/_dearpygui/_plotting.py +187 -0
- scitex/canvas/editor/_dearpygui/_rendering.py +504 -0
- scitex/canvas/editor/_dearpygui/_selection.py +295 -0
- scitex/canvas/editor/_dearpygui/_state.py +93 -0
- scitex/canvas/editor/_dearpygui/_utils.py +61 -0
- scitex/canvas/editor/flask_editor/templates/__init__.py +32 -70
- scitex/cli/__init__.py +38 -43
- scitex/cli/audio.py +76 -27
- scitex/cli/capture.py +13 -20
- scitex/cli/introspect.py +443 -0
- scitex/cli/main.py +198 -109
- scitex/cli/mcp.py +60 -34
- scitex/cli/scholar/__init__.py +8 -0
- scitex/cli/scholar/_crossref_scitex.py +296 -0
- scitex/cli/scholar/_fetch.py +25 -3
- scitex/cli/social.py +314 -0
- scitex/cli/writer.py +117 -0
- scitex/config/README.md +1 -1
- scitex/config/__init__.py +16 -2
- scitex/config/_env_registry.py +191 -0
- scitex/diagram/__init__.py +42 -19
- scitex/diagram/mcp_server.py +13 -125
- scitex/introspect/__init__.py +75 -0
- scitex/introspect/_call_graph.py +303 -0
- scitex/introspect/_class_hierarchy.py +163 -0
- scitex/introspect/_core.py +42 -0
- scitex/introspect/_docstring.py +131 -0
- scitex/introspect/_examples.py +113 -0
- scitex/introspect/_imports.py +271 -0
- scitex/introspect/_mcp/__init__.py +37 -0
- scitex/introspect/_mcp/handlers.py +208 -0
- scitex/introspect/_members.py +151 -0
- scitex/introspect/_resolve.py +89 -0
- scitex/introspect/_signature.py +131 -0
- scitex/introspect/_source.py +80 -0
- scitex/introspect/_type_hints.py +172 -0
- scitex/io/bundle/README.md +1 -1
- scitex/mcp_server.py +98 -5
- scitex/plt/__init__.py +248 -550
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/_wrappers.py +5 -10
- scitex/plt/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
- scitex/plt/gallery/README.md +1 -1
- scitex/plt/utils/_hitmap/__init__.py +82 -0
- scitex/plt/utils/_hitmap/_artist_extraction.py +343 -0
- scitex/plt/utils/_hitmap/_color_application.py +346 -0
- scitex/plt/utils/_hitmap/_color_conversion.py +121 -0
- scitex/plt/utils/_hitmap/_constants.py +40 -0
- scitex/plt/utils/_hitmap/_hitmap_core.py +334 -0
- scitex/plt/utils/_hitmap/_path_extraction.py +357 -0
- scitex/plt/utils/_hitmap/_query.py +113 -0
- scitex/plt/utils/_hitmap.py +46 -1616
- scitex/plt/utils/_metadata/__init__.py +80 -0
- scitex/plt/utils/_metadata/_artists/__init__.py +25 -0
- scitex/plt/utils/_metadata/_artists/_base.py +195 -0
- scitex/plt/utils/_metadata/_artists/_collections.py +356 -0
- scitex/plt/utils/_metadata/_artists/_extract.py +57 -0
- scitex/plt/utils/_metadata/_artists/_images.py +80 -0
- scitex/plt/utils/_metadata/_artists/_lines.py +261 -0
- scitex/plt/utils/_metadata/_artists/_patches.py +247 -0
- scitex/plt/utils/_metadata/_artists/_text.py +106 -0
- scitex/plt/utils/_metadata/_csv.py +416 -0
- scitex/plt/utils/_metadata/_detect.py +225 -0
- scitex/plt/utils/_metadata/_legend.py +127 -0
- scitex/plt/utils/_metadata/_rounding.py +117 -0
- scitex/plt/utils/_metadata/_verification.py +202 -0
- scitex/schema/README.md +1 -1
- scitex/scholar/__init__.py +8 -0
- scitex/scholar/_mcp/crossref_handlers.py +265 -0
- scitex/scholar/core/Scholar.py +63 -1700
- scitex/scholar/core/_mixins/__init__.py +36 -0
- scitex/scholar/core/_mixins/_enrichers.py +270 -0
- scitex/scholar/core/_mixins/_library_handlers.py +100 -0
- scitex/scholar/core/_mixins/_loaders.py +103 -0
- scitex/scholar/core/_mixins/_pdf_download.py +375 -0
- scitex/scholar/core/_mixins/_pipeline.py +312 -0
- scitex/scholar/core/_mixins/_project_handlers.py +125 -0
- scitex/scholar/core/_mixins/_savers.py +69 -0
- scitex/scholar/core/_mixins/_search.py +103 -0
- scitex/scholar/core/_mixins/_services.py +88 -0
- scitex/scholar/core/_mixins/_url_finding.py +105 -0
- scitex/scholar/crossref_scitex.py +367 -0
- scitex/scholar/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
- scitex/scholar/examples/00_run_all.sh +120 -0
- scitex/scholar/jobs/_executors.py +27 -3
- scitex/scholar/pdf_download/ScholarPDFDownloader.py +38 -416
- scitex/scholar/pdf_download/_cli.py +154 -0
- scitex/scholar/pdf_download/strategies/__init__.py +11 -8
- scitex/scholar/pdf_download/strategies/manual_download_fallback.py +80 -3
- scitex/scholar/pipelines/ScholarPipelineBibTeX.py +73 -121
- scitex/scholar/pipelines/ScholarPipelineParallel.py +80 -138
- scitex/scholar/pipelines/ScholarPipelineSingle.py +43 -63
- scitex/scholar/pipelines/_single_steps.py +71 -36
- scitex/scholar/storage/_LibraryManager.py +97 -1695
- scitex/scholar/storage/_mixins/__init__.py +30 -0
- scitex/scholar/storage/_mixins/_bibtex_handlers.py +128 -0
- scitex/scholar/storage/_mixins/_library_operations.py +218 -0
- scitex/scholar/storage/_mixins/_metadata_conversion.py +226 -0
- scitex/scholar/storage/_mixins/_paper_saving.py +456 -0
- scitex/scholar/storage/_mixins/_resolution.py +376 -0
- scitex/scholar/storage/_mixins/_storage_helpers.py +121 -0
- scitex/scholar/storage/_mixins/_symlink_handlers.py +226 -0
- scitex/scholar/url_finder/.tmp/open_url/KNOWN_RESOLVERS.py +462 -0
- scitex/scholar/url_finder/.tmp/open_url/README.md +223 -0
- scitex/scholar/url_finder/.tmp/open_url/_DOIToURLResolver.py +694 -0
- scitex/scholar/url_finder/.tmp/open_url/_OpenURLResolver.py +1160 -0
- scitex/scholar/url_finder/.tmp/open_url/_ResolverLinkFinder.py +344 -0
- scitex/scholar/url_finder/.tmp/open_url/__init__.py +24 -0
- scitex/security/README.md +3 -3
- scitex/session/README.md +1 -1
- scitex/sh/README.md +1 -1
- scitex/social/__init__.py +153 -0
- scitex/social/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
- scitex/template/README.md +1 -1
- scitex/template/clone_writer_directory.py +5 -5
- scitex/writer/README.md +1 -1
- scitex/writer/_mcp/handlers.py +11 -744
- scitex/writer/_mcp/tool_schemas.py +5 -335
- scitex-2.15.1.dist-info/METADATA +648 -0
- {scitex-2.14.0.dist-info → scitex-2.15.1.dist-info}/RECORD +166 -111
- scitex/canvas/editor/flask_editor/templates/_scripts.py +0 -4933
- scitex/canvas/editor/flask_editor/templates/_styles.py +0 -1658
- scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml +0 -90
- scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES.yaml +0 -1571
- scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES_DETAILED.yaml +0 -6262
- scitex/dev/plt/data/mpl/SIGNATURES_FLATTENED.yaml +0 -1274
- scitex/dev/plt/data/mpl/dir_ax.txt +0 -459
- scitex/diagram/_compile.py +0 -312
- scitex/diagram/_diagram.py +0 -355
- scitex/diagram/_mcp/__init__.py +0 -4
- scitex/diagram/_mcp/handlers.py +0 -400
- scitex/diagram/_mcp/tool_schemas.py +0 -157
- scitex/diagram/_presets.py +0 -173
- scitex/diagram/_schema.py +0 -182
- scitex/diagram/_split.py +0 -278
- scitex/plt/_mcp/__init__.py +0 -4
- scitex/plt/_mcp/_handlers_annotation.py +0 -102
- scitex/plt/_mcp/_handlers_figure.py +0 -195
- scitex/plt/_mcp/_handlers_plot.py +0 -252
- scitex/plt/_mcp/_handlers_style.py +0 -219
- scitex/plt/_mcp/handlers.py +0 -74
- scitex/plt/_mcp/tool_schemas.py +0 -497
- scitex/plt/mcp_server.py +0 -231
- scitex/scholar/data/.gitkeep +0 -0
- scitex/scholar/data/README.md +0 -44
- scitex/scholar/data/bib_files/bibliography.bib +0 -1952
- scitex/scholar/data/bib_files/neurovista.bib +0 -277
- scitex/scholar/data/bib_files/neurovista_enriched.bib +0 -441
- scitex/scholar/data/bib_files/neurovista_enriched_enriched.bib +0 -441
- scitex/scholar/data/bib_files/neurovista_processed.bib +0 -338
- scitex/scholar/data/bib_files/openaccess.bib +0 -89
- scitex/scholar/data/bib_files/pac-seizure_prediction_enriched.bib +0 -2178
- scitex/scholar/data/bib_files/pac.bib +0 -698
- scitex/scholar/data/bib_files/pac_enriched.bib +0 -1061
- scitex/scholar/data/bib_files/pac_processed.bib +0 -0
- scitex/scholar/data/bib_files/pac_titles.txt +0 -75
- scitex/scholar/data/bib_files/paywalled.bib +0 -98
- scitex/scholar/data/bib_files/related-papers-by-coauthors.bib +0 -58
- scitex/scholar/data/bib_files/related-papers-by-coauthors_enriched.bib +0 -87
- scitex/scholar/data/bib_files/seizure_prediction.bib +0 -694
- scitex/scholar/data/bib_files/seizure_prediction_processed.bib +0 -0
- scitex/scholar/data/bib_files/test_complete_enriched.bib +0 -437
- scitex/scholar/data/bib_files/test_final_enriched.bib +0 -437
- scitex/scholar/data/bib_files/test_seizure.bib +0 -46
- scitex/scholar/data/impact_factor/JCR_IF_2022.xlsx +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024.db +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024.xlsx +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024_v01.db +0 -0
- scitex/scholar/data/impact_factor.db +0 -0
- scitex/scholar/examples/SUGGESTIONS.md +0 -865
- scitex/scholar/examples/dev.py +0 -38
- scitex-2.14.0.dist-info/METADATA +0 -1238
- {scitex-2.14.0.dist-info → scitex-2.15.1.dist-info}/WHEEL +0 -0
- {scitex-2.14.0.dist-info → scitex-2.15.1.dist-info}/entry_points.txt +0 -0
- {scitex-2.14.0.dist-info → scitex-2.15.1.dist-info}/licenses/LICENSE +0 -0
|
@@ -0,0 +1,113 @@
|
|
|
1
|
+
#!/usr/bin/env python3
|
|
2
|
+
# Timestamp: "2026-01-24 (ywatanabe)"
|
|
3
|
+
# File: /home/ywatanabe/proj/scitex-python/src/scitex/plt/utils/_hitmap/_query.py
|
|
4
|
+
|
|
5
|
+
"""
|
|
6
|
+
Hitmap query and save functions.
|
|
7
|
+
|
|
8
|
+
This module provides functions to query hitmap data and save hitmaps as PNG files.
|
|
9
|
+
"""
|
|
10
|
+
|
|
11
|
+
from typing import Any, Dict, List
|
|
12
|
+
|
|
13
|
+
import numpy as np
|
|
14
|
+
|
|
15
|
+
__all__ = [
|
|
16
|
+
"query_hitmap_neighborhood",
|
|
17
|
+
"save_hitmap_png",
|
|
18
|
+
]
|
|
19
|
+
|
|
20
|
+
|
|
21
|
+
def query_hitmap_neighborhood(
|
|
22
|
+
hitmap: np.ndarray,
|
|
23
|
+
x: int,
|
|
24
|
+
y: int,
|
|
25
|
+
color_map: Dict[int, Dict[str, Any]],
|
|
26
|
+
radius: int = 2,
|
|
27
|
+
) -> List[Dict[str, Any]]:
|
|
28
|
+
"""
|
|
29
|
+
Query hit map with neighborhood sampling for smart selection.
|
|
30
|
+
|
|
31
|
+
Finds all element IDs in a neighborhood around the click point,
|
|
32
|
+
enabling selection of overlapping elements and thin lines.
|
|
33
|
+
|
|
34
|
+
Parameters
|
|
35
|
+
----------
|
|
36
|
+
hitmap : np.ndarray
|
|
37
|
+
Hit map array (uint32, element IDs from RGB encoding).
|
|
38
|
+
x : int
|
|
39
|
+
X coordinate (column) of click point.
|
|
40
|
+
y : int
|
|
41
|
+
Y coordinate (row) of click point.
|
|
42
|
+
color_map : dict
|
|
43
|
+
Mapping from element ID to element info.
|
|
44
|
+
radius : int
|
|
45
|
+
Sampling radius (e.g., 2 = 5x5 neighborhood).
|
|
46
|
+
|
|
47
|
+
Returns
|
|
48
|
+
-------
|
|
49
|
+
list of dict
|
|
50
|
+
List of element info dicts for all elements found in neighborhood,
|
|
51
|
+
sorted by distance from click point (closest first).
|
|
52
|
+
|
|
53
|
+
Notes
|
|
54
|
+
-----
|
|
55
|
+
Use cases:
|
|
56
|
+
- Alt+Click to select objects underneath (lower z-order)
|
|
57
|
+
- Click on thin lines that might be missed with exact pixel
|
|
58
|
+
- Show candidate list when multiple elements overlap
|
|
59
|
+
"""
|
|
60
|
+
h, w = hitmap.shape
|
|
61
|
+
found_ids = set()
|
|
62
|
+
id_distances = {}
|
|
63
|
+
|
|
64
|
+
# Sample neighborhood
|
|
65
|
+
for dy in range(-radius, radius + 1):
|
|
66
|
+
for dx in range(-radius, radius + 1):
|
|
67
|
+
ny, nx = y + dy, x + dx
|
|
68
|
+
if 0 <= ny < h and 0 <= nx < w:
|
|
69
|
+
element_id = int(hitmap[ny, nx])
|
|
70
|
+
if element_id > 0 and element_id in color_map:
|
|
71
|
+
found_ids.add(element_id)
|
|
72
|
+
# Track minimum distance for each ID
|
|
73
|
+
dist = abs(dx) + abs(dy) # Manhattan distance
|
|
74
|
+
if (
|
|
75
|
+
element_id not in id_distances
|
|
76
|
+
or dist < id_distances[element_id]
|
|
77
|
+
):
|
|
78
|
+
id_distances[element_id] = dist
|
|
79
|
+
|
|
80
|
+
# Sort by distance (closest first), then by ID for stability
|
|
81
|
+
sorted_ids = sorted(found_ids, key=lambda eid: (id_distances[eid], eid))
|
|
82
|
+
|
|
83
|
+
return [color_map[eid] for eid in sorted_ids]
|
|
84
|
+
|
|
85
|
+
|
|
86
|
+
def save_hitmap_png(hitmap: np.ndarray, path: str, color_map: Dict = None):
|
|
87
|
+
"""
|
|
88
|
+
Save hit map as a PNG file (RGB encoding for 24-bit IDs).
|
|
89
|
+
|
|
90
|
+
Parameters
|
|
91
|
+
----------
|
|
92
|
+
hitmap : np.ndarray
|
|
93
|
+
Hit map array (uint32, element IDs from 24-bit RGB encoding).
|
|
94
|
+
path : str
|
|
95
|
+
Output path for PNG file.
|
|
96
|
+
color_map : dict, optional
|
|
97
|
+
Color map for visualization (unused, kept for API compatibility).
|
|
98
|
+
"""
|
|
99
|
+
from PIL import Image
|
|
100
|
+
|
|
101
|
+
# Convert 24-bit IDs back to RGB for PNG storage
|
|
102
|
+
h, w = hitmap.shape
|
|
103
|
+
rgb = np.zeros((h, w, 3), dtype=np.uint8)
|
|
104
|
+
rgb[:, :, 0] = (hitmap >> 16) & 0xFF # R
|
|
105
|
+
rgb[:, :, 1] = (hitmap >> 8) & 0xFF # G
|
|
106
|
+
rgb[:, :, 2] = hitmap & 0xFF # B
|
|
107
|
+
|
|
108
|
+
# Save as RGB PNG (preserves exact ID values)
|
|
109
|
+
img = Image.fromarray(rgb, mode="RGB")
|
|
110
|
+
img.save(path)
|
|
111
|
+
|
|
112
|
+
|
|
113
|
+
# EOF
|