scitex 2.14.0__py3-none-any.whl → 2.15.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (218) hide show
  1. scitex/__init__.py +47 -0
  2. scitex/_env_loader.py +156 -0
  3. scitex/_mcp_resources/__init__.py +37 -0
  4. scitex/_mcp_resources/_cheatsheet.py +135 -0
  5. scitex/_mcp_resources/_figrecipe.py +138 -0
  6. scitex/_mcp_resources/_formats.py +102 -0
  7. scitex/_mcp_resources/_modules.py +337 -0
  8. scitex/_mcp_resources/_session.py +149 -0
  9. scitex/_mcp_tools/__init__.py +4 -0
  10. scitex/_mcp_tools/audio.py +66 -0
  11. scitex/_mcp_tools/diagram.py +11 -95
  12. scitex/_mcp_tools/introspect.py +191 -0
  13. scitex/_mcp_tools/plt.py +260 -305
  14. scitex/_mcp_tools/scholar.py +74 -0
  15. scitex/_mcp_tools/social.py +244 -0
  16. scitex/_mcp_tools/writer.py +21 -204
  17. scitex/ai/_gen_ai/_PARAMS.py +10 -7
  18. scitex/ai/classification/reporters/_SingleClassificationReporter.py +45 -1603
  19. scitex/ai/classification/reporters/_mixins/__init__.py +36 -0
  20. scitex/ai/classification/reporters/_mixins/_constants.py +67 -0
  21. scitex/ai/classification/reporters/_mixins/_cv_summary.py +387 -0
  22. scitex/ai/classification/reporters/_mixins/_feature_importance.py +119 -0
  23. scitex/ai/classification/reporters/_mixins/_metrics.py +275 -0
  24. scitex/ai/classification/reporters/_mixins/_plotting.py +179 -0
  25. scitex/ai/classification/reporters/_mixins/_reports.py +153 -0
  26. scitex/ai/classification/reporters/_mixins/_storage.py +160 -0
  27. scitex/audio/README.md +40 -36
  28. scitex/audio/__init__.py +127 -59
  29. scitex/audio/_branding.py +185 -0
  30. scitex/audio/_mcp/__init__.py +32 -0
  31. scitex/audio/_mcp/handlers.py +59 -6
  32. scitex/audio/_mcp/speak_handlers.py +238 -0
  33. scitex/audio/_relay.py +225 -0
  34. scitex/audio/engines/elevenlabs_engine.py +6 -1
  35. scitex/audio/mcp_server.py +228 -75
  36. scitex/canvas/README.md +1 -1
  37. scitex/canvas/editor/_dearpygui/__init__.py +25 -0
  38. scitex/canvas/editor/_dearpygui/_editor.py +147 -0
  39. scitex/canvas/editor/_dearpygui/_handlers.py +476 -0
  40. scitex/canvas/editor/_dearpygui/_panels/__init__.py +17 -0
  41. scitex/canvas/editor/_dearpygui/_panels/_control.py +119 -0
  42. scitex/canvas/editor/_dearpygui/_panels/_element_controls.py +190 -0
  43. scitex/canvas/editor/_dearpygui/_panels/_preview.py +43 -0
  44. scitex/canvas/editor/_dearpygui/_panels/_sections.py +390 -0
  45. scitex/canvas/editor/_dearpygui/_plotting.py +187 -0
  46. scitex/canvas/editor/_dearpygui/_rendering.py +504 -0
  47. scitex/canvas/editor/_dearpygui/_selection.py +295 -0
  48. scitex/canvas/editor/_dearpygui/_state.py +93 -0
  49. scitex/canvas/editor/_dearpygui/_utils.py +61 -0
  50. scitex/canvas/editor/flask_editor/templates/__init__.py +32 -70
  51. scitex/cli/__init__.py +38 -43
  52. scitex/cli/audio.py +76 -27
  53. scitex/cli/capture.py +13 -20
  54. scitex/cli/introspect.py +443 -0
  55. scitex/cli/main.py +198 -109
  56. scitex/cli/mcp.py +60 -34
  57. scitex/cli/scholar/__init__.py +8 -0
  58. scitex/cli/scholar/_crossref_scitex.py +296 -0
  59. scitex/cli/scholar/_fetch.py +25 -3
  60. scitex/cli/social.py +314 -0
  61. scitex/cli/writer.py +117 -0
  62. scitex/config/README.md +1 -1
  63. scitex/config/__init__.py +16 -2
  64. scitex/config/_env_registry.py +191 -0
  65. scitex/diagram/__init__.py +42 -19
  66. scitex/diagram/mcp_server.py +13 -125
  67. scitex/introspect/__init__.py +75 -0
  68. scitex/introspect/_call_graph.py +303 -0
  69. scitex/introspect/_class_hierarchy.py +163 -0
  70. scitex/introspect/_core.py +42 -0
  71. scitex/introspect/_docstring.py +131 -0
  72. scitex/introspect/_examples.py +113 -0
  73. scitex/introspect/_imports.py +271 -0
  74. scitex/introspect/_mcp/__init__.py +37 -0
  75. scitex/introspect/_mcp/handlers.py +208 -0
  76. scitex/introspect/_members.py +151 -0
  77. scitex/introspect/_resolve.py +89 -0
  78. scitex/introspect/_signature.py +131 -0
  79. scitex/introspect/_source.py +80 -0
  80. scitex/introspect/_type_hints.py +172 -0
  81. scitex/io/bundle/README.md +1 -1
  82. scitex/mcp_server.py +98 -5
  83. scitex/plt/__init__.py +248 -550
  84. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/_wrappers.py +5 -10
  85. scitex/plt/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  86. scitex/plt/gallery/README.md +1 -1
  87. scitex/plt/utils/_hitmap/__init__.py +82 -0
  88. scitex/plt/utils/_hitmap/_artist_extraction.py +343 -0
  89. scitex/plt/utils/_hitmap/_color_application.py +346 -0
  90. scitex/plt/utils/_hitmap/_color_conversion.py +121 -0
  91. scitex/plt/utils/_hitmap/_constants.py +40 -0
  92. scitex/plt/utils/_hitmap/_hitmap_core.py +334 -0
  93. scitex/plt/utils/_hitmap/_path_extraction.py +357 -0
  94. scitex/plt/utils/_hitmap/_query.py +113 -0
  95. scitex/plt/utils/_hitmap.py +46 -1616
  96. scitex/plt/utils/_metadata/__init__.py +80 -0
  97. scitex/plt/utils/_metadata/_artists/__init__.py +25 -0
  98. scitex/plt/utils/_metadata/_artists/_base.py +195 -0
  99. scitex/plt/utils/_metadata/_artists/_collections.py +356 -0
  100. scitex/plt/utils/_metadata/_artists/_extract.py +57 -0
  101. scitex/plt/utils/_metadata/_artists/_images.py +80 -0
  102. scitex/plt/utils/_metadata/_artists/_lines.py +261 -0
  103. scitex/plt/utils/_metadata/_artists/_patches.py +247 -0
  104. scitex/plt/utils/_metadata/_artists/_text.py +106 -0
  105. scitex/plt/utils/_metadata/_csv.py +416 -0
  106. scitex/plt/utils/_metadata/_detect.py +225 -0
  107. scitex/plt/utils/_metadata/_legend.py +127 -0
  108. scitex/plt/utils/_metadata/_rounding.py +117 -0
  109. scitex/plt/utils/_metadata/_verification.py +202 -0
  110. scitex/schema/README.md +1 -1
  111. scitex/scholar/__init__.py +8 -0
  112. scitex/scholar/_mcp/crossref_handlers.py +265 -0
  113. scitex/scholar/core/Scholar.py +63 -1700
  114. scitex/scholar/core/_mixins/__init__.py +36 -0
  115. scitex/scholar/core/_mixins/_enrichers.py +270 -0
  116. scitex/scholar/core/_mixins/_library_handlers.py +100 -0
  117. scitex/scholar/core/_mixins/_loaders.py +103 -0
  118. scitex/scholar/core/_mixins/_pdf_download.py +375 -0
  119. scitex/scholar/core/_mixins/_pipeline.py +312 -0
  120. scitex/scholar/core/_mixins/_project_handlers.py +125 -0
  121. scitex/scholar/core/_mixins/_savers.py +69 -0
  122. scitex/scholar/core/_mixins/_search.py +103 -0
  123. scitex/scholar/core/_mixins/_services.py +88 -0
  124. scitex/scholar/core/_mixins/_url_finding.py +105 -0
  125. scitex/scholar/crossref_scitex.py +367 -0
  126. scitex/scholar/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  127. scitex/scholar/examples/00_run_all.sh +120 -0
  128. scitex/scholar/jobs/_executors.py +27 -3
  129. scitex/scholar/pdf_download/ScholarPDFDownloader.py +38 -416
  130. scitex/scholar/pdf_download/_cli.py +154 -0
  131. scitex/scholar/pdf_download/strategies/__init__.py +11 -8
  132. scitex/scholar/pdf_download/strategies/manual_download_fallback.py +80 -3
  133. scitex/scholar/pipelines/ScholarPipelineBibTeX.py +73 -121
  134. scitex/scholar/pipelines/ScholarPipelineParallel.py +80 -138
  135. scitex/scholar/pipelines/ScholarPipelineSingle.py +43 -63
  136. scitex/scholar/pipelines/_single_steps.py +71 -36
  137. scitex/scholar/storage/_LibraryManager.py +97 -1695
  138. scitex/scholar/storage/_mixins/__init__.py +30 -0
  139. scitex/scholar/storage/_mixins/_bibtex_handlers.py +128 -0
  140. scitex/scholar/storage/_mixins/_library_operations.py +218 -0
  141. scitex/scholar/storage/_mixins/_metadata_conversion.py +226 -0
  142. scitex/scholar/storage/_mixins/_paper_saving.py +456 -0
  143. scitex/scholar/storage/_mixins/_resolution.py +376 -0
  144. scitex/scholar/storage/_mixins/_storage_helpers.py +121 -0
  145. scitex/scholar/storage/_mixins/_symlink_handlers.py +226 -0
  146. scitex/scholar/url_finder/.tmp/open_url/KNOWN_RESOLVERS.py +462 -0
  147. scitex/scholar/url_finder/.tmp/open_url/README.md +223 -0
  148. scitex/scholar/url_finder/.tmp/open_url/_DOIToURLResolver.py +694 -0
  149. scitex/scholar/url_finder/.tmp/open_url/_OpenURLResolver.py +1160 -0
  150. scitex/scholar/url_finder/.tmp/open_url/_ResolverLinkFinder.py +344 -0
  151. scitex/scholar/url_finder/.tmp/open_url/__init__.py +24 -0
  152. scitex/security/README.md +3 -3
  153. scitex/session/README.md +1 -1
  154. scitex/sh/README.md +1 -1
  155. scitex/social/__init__.py +153 -0
  156. scitex/social/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  157. scitex/template/README.md +1 -1
  158. scitex/template/clone_writer_directory.py +5 -5
  159. scitex/writer/README.md +1 -1
  160. scitex/writer/_mcp/handlers.py +11 -744
  161. scitex/writer/_mcp/tool_schemas.py +5 -335
  162. scitex-2.15.1.dist-info/METADATA +648 -0
  163. {scitex-2.14.0.dist-info → scitex-2.15.1.dist-info}/RECORD +166 -111
  164. scitex/canvas/editor/flask_editor/templates/_scripts.py +0 -4933
  165. scitex/canvas/editor/flask_editor/templates/_styles.py +0 -1658
  166. scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml +0 -90
  167. scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES.yaml +0 -1571
  168. scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES_DETAILED.yaml +0 -6262
  169. scitex/dev/plt/data/mpl/SIGNATURES_FLATTENED.yaml +0 -1274
  170. scitex/dev/plt/data/mpl/dir_ax.txt +0 -459
  171. scitex/diagram/_compile.py +0 -312
  172. scitex/diagram/_diagram.py +0 -355
  173. scitex/diagram/_mcp/__init__.py +0 -4
  174. scitex/diagram/_mcp/handlers.py +0 -400
  175. scitex/diagram/_mcp/tool_schemas.py +0 -157
  176. scitex/diagram/_presets.py +0 -173
  177. scitex/diagram/_schema.py +0 -182
  178. scitex/diagram/_split.py +0 -278
  179. scitex/plt/_mcp/__init__.py +0 -4
  180. scitex/plt/_mcp/_handlers_annotation.py +0 -102
  181. scitex/plt/_mcp/_handlers_figure.py +0 -195
  182. scitex/plt/_mcp/_handlers_plot.py +0 -252
  183. scitex/plt/_mcp/_handlers_style.py +0 -219
  184. scitex/plt/_mcp/handlers.py +0 -74
  185. scitex/plt/_mcp/tool_schemas.py +0 -497
  186. scitex/plt/mcp_server.py +0 -231
  187. scitex/scholar/data/.gitkeep +0 -0
  188. scitex/scholar/data/README.md +0 -44
  189. scitex/scholar/data/bib_files/bibliography.bib +0 -1952
  190. scitex/scholar/data/bib_files/neurovista.bib +0 -277
  191. scitex/scholar/data/bib_files/neurovista_enriched.bib +0 -441
  192. scitex/scholar/data/bib_files/neurovista_enriched_enriched.bib +0 -441
  193. scitex/scholar/data/bib_files/neurovista_processed.bib +0 -338
  194. scitex/scholar/data/bib_files/openaccess.bib +0 -89
  195. scitex/scholar/data/bib_files/pac-seizure_prediction_enriched.bib +0 -2178
  196. scitex/scholar/data/bib_files/pac.bib +0 -698
  197. scitex/scholar/data/bib_files/pac_enriched.bib +0 -1061
  198. scitex/scholar/data/bib_files/pac_processed.bib +0 -0
  199. scitex/scholar/data/bib_files/pac_titles.txt +0 -75
  200. scitex/scholar/data/bib_files/paywalled.bib +0 -98
  201. scitex/scholar/data/bib_files/related-papers-by-coauthors.bib +0 -58
  202. scitex/scholar/data/bib_files/related-papers-by-coauthors_enriched.bib +0 -87
  203. scitex/scholar/data/bib_files/seizure_prediction.bib +0 -694
  204. scitex/scholar/data/bib_files/seizure_prediction_processed.bib +0 -0
  205. scitex/scholar/data/bib_files/test_complete_enriched.bib +0 -437
  206. scitex/scholar/data/bib_files/test_final_enriched.bib +0 -437
  207. scitex/scholar/data/bib_files/test_seizure.bib +0 -46
  208. scitex/scholar/data/impact_factor/JCR_IF_2022.xlsx +0 -0
  209. scitex/scholar/data/impact_factor/JCR_IF_2024.db +0 -0
  210. scitex/scholar/data/impact_factor/JCR_IF_2024.xlsx +0 -0
  211. scitex/scholar/data/impact_factor/JCR_IF_2024_v01.db +0 -0
  212. scitex/scholar/data/impact_factor.db +0 -0
  213. scitex/scholar/examples/SUGGESTIONS.md +0 -865
  214. scitex/scholar/examples/dev.py +0 -38
  215. scitex-2.14.0.dist-info/METADATA +0 -1238
  216. {scitex-2.14.0.dist-info → scitex-2.15.1.dist-info}/WHEEL +0 -0
  217. {scitex-2.14.0.dist-info → scitex-2.15.1.dist-info}/entry_points.txt +0 -0
  218. {scitex-2.14.0.dist-info → scitex-2.15.1.dist-info}/licenses/LICENSE +0 -0
scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml DELETED
@@ -1,90 +0,0 @@
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- # Timestamp: "2025-12-21 12:37:14 (ywatanabe)"
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- # File: ./src/scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml
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-
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- basic:
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- - plot # Line/marker plots
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- - scatter # Scatter plots
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- - bar # Vertical bar charts
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- - barh # Horizontal bar charts
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- - stem # Stem plots
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- - step # Step plots
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- - fill # Filled polygons
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- - fill_between # Fill between y-values
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- - fill_betweenx # Fill between x-values
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-
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- statistical:
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- - hist # Histogram
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- - hist2d # 2D histogram
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- - boxplot # Box and whisker plots
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- - bxp # Box plot from precomputed stats
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- - violinplot # Violin plots
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- - violin # Single violin
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- - errorbar # Error bar plots
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- - pie # Pie charts
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- - ecdf # Empirical cumulative distribution
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-
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- image:
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- - imshow # Display image/array
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- - matshow # Display matrix
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- - pcolor # Pseudocolor plot
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- - pcolormesh # Pseudocolor mesh (faster)
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- - pcolorfast # Pseudocolor (fastest)
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- - contour # Contour lines
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- - contourf # Filled contours
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- - hexbin # Hexagonal binning
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- - spy # Sparsity pattern
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-
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- vector:
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- - quiver # Arrow/vector field
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- - streamplot # Streamlines
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- - barbs # Wind barbs
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-
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- spectral:
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- - specgram # Spectrogram
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- - psd # Power spectral density
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- - csd # Cross spectral density
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- - cohere # Coherence
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- - acorr # Autocorrelation
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- - xcorr # Cross-correlation
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- - angle_spectrum # Phase angle spectrum
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- - magnitude_spectrum # Magnitude spectrum
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- - phase_spectrum # Phase spectrum
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-
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- triangulation:
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- - tricontour # Triangular contour lines
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- - tricontourf # Triangular filled contours
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- - tripcolor # Triangular pseudocolor
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- - triplot # Triangular grid lines
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-
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- composite:
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- - stackplot # Stacked area plots
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- - stairs # Stair/step plots
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- - eventplot # Event sequence plots
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- - broken_barh # Broken horizontal bars
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-
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- log_scale:
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- - loglog # Log-log scale plot
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- - semilogx # Semi-log x scale
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- - semilogy # Semi-log y scale
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-
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- annotation:
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- - annotate # Text with arrow annotation
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- - text # Text at position
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- - arrow # Arrow patch
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- - axhline # Horizontal line across axes
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- - axvline # Vertical line across axes
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- - hlines # Horizontal lines at y positions
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- - vlines # Vertical lines at x positions
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- - axhspan # Horizontal span (shaded region)
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- - axvspan # Vertical span (shaded region)
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- - axline # Infinite line
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-
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- decoration:
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- - legend # Add legend
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- - grid # Add grid
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- - table # Add table
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- - clabel # Contour labels
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- - bar_label # Bar chart labels
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- - quiverkey # Quiver key/legend
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-
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- # EOF